miRBase entry: dme-mir-276b

Stem-loop dme-mir-276b


Accession
MI0000375
Description
Drosophila melanogaster dme-mir-276b precursor miRNA mir-276
Gene
family?
RF00637; mir-276

Literature search
12 open access papers mention dme-mir-276b
(36 sentences)

Sequence

751067 reads, 14614 reads per million, 49 experiments
aaaaccgaagucuuuuuaccauCAGCGAGGUAUAGAGUUCCUACGuuccuauauucagucgUAGGAACUUAAUACCGUGCUCUuggaggacugucgacc
.....(((((((((....(((..((((.(((((.(((((((((((..............))))))))))).))))).))))..))))))))).)))...

Structure
aaaac   -      uuua   uC    A     A           uuccua 
     cga agucuu    cca  AGCG GGUAU GAGUUCCUACG      u
     ||| ||||||    |||  |||| ||||| |||||||||||       
     gcu ucagga    ggu  UCGU CCAUA UUCAAGGAUgc      a
--cca   g      ----   UC    G     A           ugacuu 


Annotation confidence High
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Genome context
chr3L: 10319785-10319883 [+]

Database links

Mature dme-miR-276b-3p

Accession MIMAT0000354
Description Drosophila melanogaster dme-miR-276b-3p mature miRNA
Sequence 62 - UAGGAACUUAAUACCGUGCUCU - 83
Evidence experimental
Northern [1], cloned [2], 454 [3-4], Illumina [4]
Database links
Predicted targets

Mature dme-miR-276b-5p

Accession MIMAT0020815
Description Drosophila melanogaster dme-miR-276b-5p mature miRNA
Sequence 23 - CAGCGAGGUAUAGAGUUCCUACG - 45
Evidence experimental
Northern [1], 454 [3-4], Illumina [4]
Database links

References

  1. PubMed ID: 12919683
    The small RNA profile during Drosophila melanogaster development
    "Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T"
    "Dev Cell (2003) 5:337-350

  2. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864

  3. PubMed ID: 17989255
    Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
    "Genome Res (2007) 17:1865-1879

  4. PubMed ID: 12844358
    Computational identification of Drosophila microRNA genes
    "Lai EC, Tomancak P, Williams RW, Rubin GM"
    "Genome Biol (2003) 4:R42