Accession
MI0000373
Description
Drosophila melanogaster
dme-mir-124 precursor miRNA
Literature search
19 open access papers mention dme-mir-124
(339 sentences)
(339 sentences)
Sequence
295929
reads,
18560
reads per million, 48 experiments
ucauuugguacguuuuucuccuGGUAUCCACUGUAGGCCUAUAUGuauuuccaccaUAAGGCACGCGGUGAAUGCCAAGagcgaacgcaguucuacaaau
..........(((((..(((.((((((.((((((..((((.((((.........))))))))..)))))).)))))).))).))))).............
..........(((((..(((.((((((.((((((..((((.((((.........))))))))..)))))).)))))).))).))))).............
Structure
---ucauuuggua uu c C AG A uau
cguuu cuc uGGUAU CACUGU GCCU UAUG u
||||| ||| |||||| |||||| |||| |||| u
gcaag gaG ACCGUA GUGGCG CGGA AUac c
uaaacaucuugac -c A A CA - cac
Annotation confidence
High
Do you think this miRNA is real?
Comments
miR-124 was reported independently in references [1] and [2]. Computational prediction followed by northern blotting confirmed that the strand containing the predicted miR is predominantly expressed [1]. Reference [2] confirmed the 5' end of the excised miRNA by cloning and reported a length distribution of 19-23 nt with 23 nt the most commonly expressed.
Genome context
chr2L: 17566370-17566469 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dme-mir-124
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature dme-miR-124-3p
| Accession | MIMAT0000351 |
| Description | Drosophila melanogaster dme-miR-124-3p mature miRNA |
| Sequence | 57 - UAAGGCACGCGGUGAAUGCCAAG - 79 |
| Evidence |
experimental
cloned [2], Northern [2-3], 454 [4-5], Illumina [5] |
| Database links |
|
| Predicted targets |
|
Mature dme-miR-124-5p
| Accession | MIMAT0020813 |
| Description | Drosophila melanogaster dme-miR-124-5p mature miRNA |
| Sequence | 23 - GGUAUCCACUGUAGGCCUAUAUG - 45 |
| Evidence | not_experimental |
| Database links |
|
References
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