Stem-loop mmu-mir-122

Accession

MI0000256

Symbol

MGI: Mir122

Description

Mus musculus mmu-mir-122 precursor miRNA mir-122

Gene
family

RF00684; mir-122

Literature search

264 open access papers mention mmu-mir-122
(2448 sentences)

Sequence

3057635 reads, 4341 reads per million, 92 experiments

agcugUGGAGUGUGACAAUGGUGUUUGuguccaaaccaucAAACGCCAUUAUCACACUAAAUagcu
((((((..(((((((.(((((((((((((.......)).))))))))))).)))))))..))))))

Structure

      GG       C           -  uc 
agcugU  AGUGUGA AAUGGUGUUUG ug  c
||||||  ||||||| ||||||||||| ||  a
ucgaUA  UCACACU UUACCGCAAAc ac  a
      AA       A           u  ca 

Annotation confidence High

Genome context

chr18: 65248861-65248926 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mmu-mir-122

Mature mmu-miR-122-5p

• Accession: MIMAT0000246
• Description: Mus musculus mmu-miR-122-5p mature miRNA
• Sequence: 6 - UGGAGUGUGACAAUGGUGUUUG - 27
• Evidence: experimental ; cloned [1-2], Illumina [3-4]

Mature mmu-miR-122-3p

• Accession: MIMAT0017005
• Description: Mus musculus mmu-miR-122-3p mature miRNA
• Sequence: 41 - AAACGCCAUUAUCACACUAAAU - 62
• Evidence: experimental ; Illumina [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 12007417
   Identification of tissue-specific microRNAs from mouse
   "Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T"
   "Curr Biol (2002) 12:735-739


3. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


4. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009