Stem-loop dme-mir-13b-2

Accession

MI0000135

Description

Drosophila melanogaster dme-mir-13b-2 precursor miRNA

Literature search

12 open access papers mention dme-mir-13b-2
(39 sentences)

Sequence

318142 reads, 6773 reads per million, 49 experiments

uauuaacGCGUCAAAAUGACUGUGAGCUAUGuggauuugacuucaUAUCACAGCCAUUUUGACGAGUuug
....(((.((((((((((.((((((..((((.((......)).)))))))))).)))))))))).)))..

Structure

uauu   G          A      GC    u  au 
    aac CGUCAAAAUG CUGUGA  UAUG gg  u
    ||| |||||||||| ||||||  |||| ||   
    uUG GCAGUUUUAC GACACU  AUac uc  u
--gu   A          C      --    u  ag 

Annotation confidence High

Genome context

chrX: 9091230-9091299 [+]

Mature dme-miR-13b-3p

• Accession: MIMAT0000119
• Description: Drosophila melanogaster dme-miR-13b-3p mature miRNA
• Sequence: 46 - UAUCACAGCCAUUUUGACGAGU - 67
• Evidence: experimental ; Northern [1-2], cloned [3], 454 [4-5], Illumina [5]

Mature dme-miR-13b-2-5p

• Accession: MIMAT0020797
• Description: Drosophila melanogaster dme-miR-13b-2-5p mature miRNA
• Sequence: 8 - GCGUCAAAAUGACUGUGAGCUAUG - 31
• Evidence: not_experimental

References

1. PubMed ID: 11679670
   Identification of novel genes coding for small expressed RNAs
   "Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T"
   "Science (2001) 294:853-858


2. PubMed ID: 12812784
   Temporal regulation of microRNA expression in Drosophila melanogaster mediated by hormonal signals and broad-Complex gene activity
   "Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V"
   "Dev Biol (2003) 259:9-18


3. PubMed ID: 12919683
   The small RNA profile during Drosophila melanogaster development
   "Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T"
   "Dev Cell (2003) 5:337-350


4. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


5. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879