ID cel-mir-1 standard; RNA; CEL; 96 BP.
XX
AC MI0000003;
XX
DE Caenorhabditis elegans miR-1 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
RN [3]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [4]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [5]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [6]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
RN [7]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [8]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [9]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [10]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR RFAM; RF00103; mir-1.
DR WORMBASE; T09B4/23107-23012; .
XX
CC miR-1 was independently identified in C. elegans [1,2] and Drosophila
CC melanogaster (MIR:MI0000116) [3]. The sequence is also conserved in C.
CC briggsae (MIR:MI0000493).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0020301"
FT /product="cel-miR-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [10]"
FT miRNA 61..81
FT /accession="MIMAT0000003"
FT /product="cel-miR-1-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4-5], Northern [1], Illumina
FT [10,8], PCR [6], 454 [7], CLIPseq [9]"
XX
SQ Sequence 96 BP; 32 A; 16 C; 23 G; 0 T; 25 other;
aaagugaccg uaccgagcug cauacuuccu uacaugccca uacuauauca uaaauggaua 60
uggaauguaa agaaguaugu agaacggggu gguagu 96
//
ID cel-mir-2 standard; RNA; CEL; 98 BP.
XX
AC MI0000004;
XX
DE Caenorhabditis elegans miR-2 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
RN [3]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [4]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [5]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
RN [6]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [7]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [8]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [9]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR RFAM; RF00047; mir-2.
DR WORMBASE; M04C9/29652-29555; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0020302"
FT /product="cel-miR-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [9]"
FT miRNA 61..83
FT /accession="MIMAT0000004"
FT /product="cel-miR-2-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], PCR [5], 454 [6], Illumina
FT [7,9], CLIPseq [8]"
XX
SQ Sequence 98 BP; 27 A; 19 C; 22 G; 0 T; 30 other;
uaaacaguau acagaaagcc aucaaagcgg ugguugaugu guugcaaauu augacuuuca 60
uaucacagcc agcuuugaug ugcugccugu ugcacugu 98
//
ID cel-mir-34 standard; RNA; CEL; 97 BP.
XX
AC MI0000005;
XX
DE Caenorhabditis elegans miR-34 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; Y41G9A/23565-23469; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000005"
FT /product="cel-miR-34-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], PCR [4], 454 [5],
FT Illumina [6], CLIPseq [7]"
FT miRNA 53..74
FT /accession="MIMAT0015093"
FT /product="cel-miR-34-3p"
FT /evidence=experimental
FT /experiment="CLIPseq [7]"
XX
SQ Sequence 97 BP; 21 A; 27 C; 23 G; 0 T; 26 other;
cggacaaugc ucgagaggca gugugguuag cugguugcau auuuccuuga caacggcuac 60
cuucacugcc accccgaaca ugucguccau cuuugaa 97
//
ID cel-mir-35 standard; RNA; CEL; 97 BP.
XX
AC MI0000006;
XX
DE Caenorhabditis elegans miR-35 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; Y62F5A/16840-16936; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0020303"
FT /product="cel-miR-35-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 61..82
FT /accession="MIMAT0000006"
FT /product="cel-miR-35-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], 454 [4], Illumina
FT [5,7], CLIPseq [6]"
XX
SQ Sequence 97 BP; 20 A; 25 C; 22 G; 0 T; 30 other;
ucucggauca gaucgagcca uugcugguuu cuuccacagu gguacuuucc auuagaacua 60
ucaccgggug gaaacuagca guggcucgau cuuuucc 97
//
ID cel-mir-36 standard; RNA; CEL; 97 BP.
XX
AC MI0000007;
XX
DE Caenorhabditis elegans miR-36 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; Y62F5A/16945-17041; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0020304"
FT /product="cel-miR-36-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 61..82
FT /accession="MIMAT0000007"
FT /product="cel-miR-36-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], 454 [3], Illumina
FT [4,6], CLIPseq [5]"
XX
SQ Sequence 97 BP; 21 A; 30 C; 26 G; 0 T; 20 other;
caccgcuguc ggggaaccgc gccaauuuuc gcuucagugc uagaccaucc aaagugucua 60
ucaccgggug aaaauucgca uggguccccg acgcgga 97
//
ID cel-mir-37 standard; RNA; CEL; 98 BP.
XX
AC MI0000008;
XX
DE Caenorhabditis elegans miR-37 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; Y62F5A/17065-17162; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0015094"
FT /product="cel-miR-37-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [6]"
FT miRNA 61..82
FT /accession="MIMAT0000008"
FT /product="cel-miR-37-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], 454 [4], Illumina
FT [5], CLIPseq [6]"
XX
SQ Sequence 98 BP; 16 A; 24 C; 26 G; 0 T; 32 other;
uucuagaaac ccuuggacca gugugggugu ccguugcggu gcuacauucu cuaaucugua 60
ucaccgggug aacacuugca gugguccucg ugguuucu 98
//
ID cel-mir-38 standard; RNA; CEL; 95 BP.
XX
AC MI0000009;
XX
DE Caenorhabditis elegans miR-38 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; Y62F5A/17162-17259; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0020305"
FT /product="cel-miR-38-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 58..79
FT /accession="MIMAT0000009"
FT /product="cel-miR-38-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], 454 [4], Illumina
FT [5,7], CLIPseq [6]"
XX
SQ Sequence 95 BP; 23 A; 22 C; 25 G; 0 T; 25 other;
gugagccagg uccuguuccg guuuuuuccg uggugauaac gcauccaaaa gucucuauca 60
ccgggagaaa aacuggagua ggaccuguga cucau 95
//
ID cel-mir-39 standard; RNA; CEL; 87 BP.
XX
AC MI0000010;
XX
DE Caenorhabditis elegans miR-39 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; Y62F5A/17315-17412; .
XX
CC The excised miRNA sequence was initially predicted [1], and confirmed
CC later by sequencing [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0020306"
FT /product="cel-miR-39-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 55..76
FT /accession="MIMAT0000010"
FT /product="cel-miR-39-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2], 454 [3], Illumina
FT [4,6], CLIPseq [5]"
XX
SQ Sequence 87 BP; 19 A; 19 C; 22 G; 0 T; 27 other;
uauaccgaga gcccagcuga uuucgucuug guaauaagcu cgucauugag auuaucaccg 60
gguguaaauc agcuuggcuc ugguguc 87
//
ID cel-mir-40 standard; RNA; CEL; 92 BP.
XX
AC MI0000011;
XX
DE Caenorhabditis elegans miR-40 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; Y62F5A/17411-17507; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0020307"
FT /product="cel-miR-40-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 56..77
FT /accession="MIMAT0000011"
FT /product="cel-miR-40-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], 454 [4], Illumina
FT [5,7], CLIPseq [6]"
XX
SQ Sequence 92 BP; 24 A; 21 C; 24 G; 0 T; 23 other;
uccuguccgc accucagugg auguaugcca ugaugauaag auaucagaaa uccuaucacc 60
ggguguacau cagcuaaggu gcggguacag gu 92
//
ID cel-mir-41 standard; RNA; CEL; 97 BP.
XX
AC MI0000012;
XX
DE Caenorhabditis elegans miR-41 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; Y62F5A/17540-17636; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0020770"
FT /product="cel-miR-41-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 61..82
FT /accession="MIMAT0000012"
FT /product="cel-miR-41-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4,6],
FT CLIPseq [5]"
XX
SQ Sequence 97 BP; 22 A; 25 C; 23 G; 0 T; 27 other;
gggucccaga gaccuuggug guuuuucucu gcagugauag auacuucuaa caacucgcua 60
ucaccgggug aaaaaucacc uaggucugga gccuccu 97
//
ID cel-mir-42 standard; RNA; CEL; 95 BP.
XX
AC MI0000013;
XX
DE Caenorhabditis elegans miR-42 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
RN [3]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [4]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; ZK930/12429-12523; .
XX
CC The extents of the dominant mature miRNA species are adjusted here in
CC accordance with a large scale cloning and sequencing study [5].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..38
FT /accession="MIMAT0015095"
FT /product="cel-miR-42-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [7]"
FT miRNA 60..81
FT /accession="MIMAT0000013"
FT /product="cel-miR-42-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1], 454 [5], Illumina
FT [6], CLIPseq [7]"
XX
SQ Sequence 95 BP; 16 A; 20 C; 26 G; 0 T; 33 other;
uucgcggacc uuugugggug uuugcuuuuu cggugaaguu gucuuccgua gcuucuucuu 60
caccggguua acaucuacag agguccaaaa agggg 95
//
ID cel-mir-43 standard; RNA; CEL; 98 BP.
XX
AC MI0000014;
XX
DE Caenorhabditis elegans miR-43 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
RN [3]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [4]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; ZK930/12528-12625; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..44
FT /accession="MIMAT0020308"
FT /product="cel-miR-43-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 61..83
FT /accession="MIMAT0000014"
FT /product="cel-miR-43-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1], 454 [5], Illumina
FT [6-7]"
XX
SQ Sequence 98 BP; 25 A; 23 C; 25 G; 0 T; 25 other;
uauuggcacu agucgcccgu gacaucaaga aacuagugau uaugccaaac cacagggaca 60
uaucacaguu uacuugcugu cgcgggcggu gcugaguu 98
//
ID cel-mir-44 standard; RNA; CEL; 96 BP.
XX
AC MI0000015;
XX
DE Caenorhabditis elegans miR-44 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; ZK930/12641-12736; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0020771"
FT /product="cel-miR-44-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 61..81
FT /accession="MIMAT0000015"
FT /product="cel-miR-44-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], 454 [4], Illumina
FT [5,7], CLIPseq [6]"
XX
SQ Sequence 96 BP; 26 A; 22 C; 22 G; 0 T; 26 other;
gagaaaaugg ccaaucugga ugugcucguu ggucauagac gucaacacga acuguucaua 60
ugacuagaga cacauucagc uuggccugcu ucucua 96
//
ID cel-mir-45 standard; RNA; CEL; 96 BP.
XX
AC MI0000016;
XX
DE Caenorhabditis elegans miR-45 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; ZK930/3657-3562; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0020772"
FT /product="cel-miR-45-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 61..81
FT /accession="MIMAT0000016"
FT /product="cel-miR-45-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], 454 [4], Illumina
FT [5,7], CLIPseq [6]"
XX
SQ Sequence 96 BP; 27 A; 26 C; 21 G; 0 T; 22 other;
caccaugugc cacgcuggau gugcucguua gucauaauau ccuccacaaa gcaaggacua 60
ugacuagaga cacauucagc uuggcgccga augcau 96
//
ID cel-mir-46 standard; RNA; CEL; 97 BP.
XX
AC MI0000017;
XX
DE Caenorhabditis elegans miR-46 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; ZK525/4728-4824; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0015096"
FT /product="cel-miR-46-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [6], Illumina [7]"
FT miRNA 61..82
FT /accession="MIMAT0000017"
FT /product="cel-miR-46-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], 454 [4], Illumina
FT [5,7], CLIPseq [6]"
XX
SQ Sequence 97 BP; 22 A; 21 C; 28 G; 0 T; 26 other;
cugaggugaa gcugaagaga gccgucuauu gacaguucaa gaccacgagu cguugugugc 60
ugucauggag ucgcucucuu cagaugaucc ggucaau 97
//
ID cel-mir-47 standard; RNA; CEL; 97 BP.
XX
AC MI0000018;
XX
DE Caenorhabditis elegans miR-47 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; K02B9/506-602; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0015097"
FT /product="cel-miR-47-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [7]"
FT miRNA 61..82
FT /accession="MIMAT0000018"
FT /product="cel-miR-47-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], PCR [4], 454 [5],
FT Illumina [6], CLIPseq [7]"
XX
SQ Sequence 97 BP; 24 A; 22 C; 26 G; 0 T; 25 other;
gagagccgac ugaaacugaa gagagcaguc uauugacagu cgguuacucg aaaucuuuac 60
ugucauggag gcgcucucuu cagaugaugu cuggccc 97
//
ID cel-mir-48 standard; RNA; CEL; 98 BP.
XX
AC MI0000019;
XX
DE Caenorhabditis elegans miR-48 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; WBGene00003039; lin-58.
DR ENTREZGENE; 260115; lin-58.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000019"
FT /product="cel-miR-48-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5], CLIPseq
FT [6]"
FT miRNA 54..75
FT /accession="MIMAT0015098"
FT /product="cel-miR-48-3p"
FT /evidence=experimental
FT /experiment="CLIPseq [6]"
XX
SQ Sequence 98 BP; 25 A; 25 C; 23 G; 0 T; 25 other;
aaacucccgg gaacuugagg uaggcucagu agaugcgaau ugaacgguau cucacaucca 60
ccagccuagc ucgcauuccc agaguuuacg guauuguu 98
//
ID cel-mir-49 standard; RNA; CEL; 97 BP.
XX
AC MI0000020;
XX
DE Caenorhabditis elegans miR-49 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F19C6/9366-9462; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..43
FT /accession="MIMAT0020309"
FT /product="cel-miR-49-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 61..82
FT /accession="MIMAT0000020"
FT /product="cel-miR-49-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4,6],
FT CLIPseq [5]"
XX
SQ Sequence 97 BP; 26 A; 20 C; 25 G; 0 T; 26 other;
uuuugaaaaa gaccaccguc cgcaguuugu ugugaugugc uccaagcaau caugagucug 60
aagcaccacg agaagcugca gauggagguu cugauuu 97
//
ID cel-mir-50 standard; RNA; CEL; 99 BP.
XX
AC MI0000021;
XX
DE Caenorhabditis elegans miR-50 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; Y71G12B/98208-98306; .
XX
CC The extents of the dominant mature miRNA species are adjusted here in
CC accordance with a large scale cloning and sequencing study [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0000021"
FT /product="cel-miR-50-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4,6],
FT CLIPseq [5]"
FT miRNA 58..79
FT /accession="MIMAT0020310"
FT /product="cel-miR-50-3p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
XX
SQ Sequence 99 BP; 17 A; 26 C; 31 G; 0 T; 25 other;
cugcccgccg gccgcugaua ugucugguau ucuuggguuu gaacuuccag cguugaaccc 60
gcauauuaga cguaucgacg gccggcgggg cagguaaug 99
//
ID cel-mir-51 standard; RNA; CEL; 100 BP.
XX
AC MI0000022;
XX
DE Caenorhabditis elegans miR-51 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR RFAM; RF00104; mir-10.
DR WORMBASE; F36H1/2915-2816; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0000022"
FT /product="cel-miR-51-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5], CLIPseq
FT [6]"
FT miRNA 57..78
FT /accession="MIMAT0015099"
FT /product="cel-miR-51-3p"
FT /evidence=experimental
FT /experiment="CLIPseq [6]"
XX
SQ Sequence 100 BP; 28 A; 23 C; 28 G; 0 T; 21 other;
guccgaaaag uccgucuacc cguagcuccu auccauguua cuggucaaaa agugaacaug 60
gaagcaggua caggugcacg gcgaguaggg ucaugaagcu 100
//
ID cel-mir-52 standard; RNA; CEL; 100 BP.
XX
AC MI0000023;
XX
DE Caenorhabditis elegans miR-52 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
RN [3]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [4]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [8]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; Y37A1B/60854-60953; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..40
FT /accession="MIMAT0000023"
FT /product="cel-miR-52-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1], 454 [5], Illumina
FT [6,8], CLIPseq [7]"
FT miRNA 58..79
FT /accession="MIMAT0020311"
FT /product="cel-miR-52-3p"
FT /evidence=experimental
FT /experiment="Illumina [8]"
XX
SQ Sequence 100 BP; 26 A; 24 C; 22 G; 0 T; 28 other;
uccaacucua acaguccacc cguacauaug uuuccgugcu ugacagcgaa gcucaaucac 60
guuacaauga aaggguagcc gguuauugaa guugggucuu 100
//
ID cel-mir-53 standard; RNA; CEL; 99 BP.
XX
AC MI0000024;
XX
DE Caenorhabditis elegans miR-53 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F36H1/4494-4396; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0000024"
FT /product="cel-miR-53-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4,6],
FT CLIPseq [5]"
FT miRNA 57..78
FT /accession="MIMAT0020312"
FT /product="cel-miR-53-3p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
XX
SQ Sequence 99 BP; 23 A; 26 C; 20 G; 0 T; 30 other;
ccgauucuga caguccaccc guacauuugu uuccgugcuu gacuucaaag cucaaucacg 60
gcacaauaua ugggucgcca gucauuguag ucggaauuu 99
//
ID cel-mir-54 standard; RNA; CEL; 99 BP.
XX
AC MI0000025;
XX
DE Caenorhabditis elegans miR-54 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F09A5/18644-18546; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0020773"
FT /product="cel-miR-54-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 61..84
FT /accession="MIMAT0000025"
FT /product="cel-miR-54-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5,7],
FT CLIPseq [6]"
XX
SQ Sequence 99 BP; 27 A; 21 C; 24 G; 0 T; 27 other;
gugagucgcg cucugacuag gauaugagac gacgagaaca uugcuuuuuu aaaagacuug 60
uacccguaau cuucauaauc cgagucaggg cuagcugac 99
//
ID cel-mir-55 standard; RNA; CEL; 98 BP.
XX
AC MI0000026;
XX
DE Caenorhabditis elegans miR-55 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F09A5/18474-18377; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0020313"
FT /product="cel-miR-55-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 61..83
FT /accession="MIMAT0000026"
FT /product="cel-miR-55-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5-6]"
XX
SQ Sequence 98 BP; 23 A; 20 C; 20 G; 0 T; 35 other;
agauuuggaa cuuaauggga cucggcagaa accuaucggu uauacuuuuu ggauaugcua 60
uacccguaua aguuucugcu gagccccuua uuccuguu 98
//
ID cel-mir-56 standard; RNA; CEL; 97 BP.
XX
AC MI0000027;
XX
DE Caenorhabditis elegans miR-56 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; F09A5/18337-18241; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..42
FT /accession="MIMAT0000027"
FT /product="cel-miR-56-5p"
FT /evidence=experimental
FT /experiment="cloned [1], CLIPseq [7]"
FT miRNA 61..82
FT /accession="MIMAT0000028"
FT /product="cel-miR-56-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], PCR [4], 454 [5],
FT Illumina [6], CLIPseq [7]"
XX
SQ Sequence 97 BP; 18 A; 25 C; 24 G; 0 T; 30 other;
gagccagugu cuguucuugg cggauccauu uuggguugua ccucauccua aauuugacgg 60
uacccguaau guuuccgcug agaaccgacu gugcacc 97
//
ID cel-mir-57 standard; RNA; CEL; 99 BP.
XX
AC MI0000028;
XX
DE Caenorhabditis elegans miR-57 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR RFAM; RF00104; mir-10.
DR WORMBASE; T09A5/18697-18599; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0000029"
FT /product="cel-miR-57-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4,6],
FT CLIPseq [5]"
FT miRNA 55..76
FT /accession="MIMAT0020314"
FT /product="cel-miR-57-3p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
XX
SQ Sequence 99 BP; 33 A; 22 C; 21 G; 0 T; 23 other;
aucgacaugc ucgucuaccc uguagaucga gcuguguguu ugaaacaauc auacacgagc 60
uagacuacaa ggugcacgaa caaaccgaag auuuaugaa 99
//
ID cel-mir-58a standard; RNA; CEL; 97 BP.
XX
AC MI0000029;
XX
DE Caenorhabditis elegans miR-58 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
RN [3]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [4]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; Y67D8A/16188-16284; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0015100"
FT /product="cel-miR-58a-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [7]"
FT miRNA 61..82
FT /accession="MIMAT0000030"
FT /product="cel-miR-58a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], 454 [5], Illumina [6], CLIPseq
FT [7]"
XX
SQ Sequence 97 BP; 23 A; 27 C; 20 G; 0 T; 27 other;
gcucgucaua uccauugccc uacucuucgc aucucaucac uucguccaau accauaggga 60
ugagaucguu caguacggca auggacugag cuagagu 97
//
ID cel-mir-59 standard; RNA; CEL; 100 BP.
XX
AC MI0000030;
XX
DE Caenorhabditis elegans miR-59 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; B0035/14964-14865; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0015101"
FT /product="cel-miR-59-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [5]"
FT miRNA 63..85
FT /accession="MIMAT0000031"
FT /product="cel-miR-59-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4], CLIPseq
FT [5]"
XX
SQ Sequence 100 BP; 38 A; 14 C; 19 G; 0 T; 29 other;
aguugaucua gauaugacau cguccugaaa acgaaacgga acaaaaguuc aagauauuga 60
uuucgaaucg uuuaucagga ugaugugauu aaaaucaacu 100
//
ID cel-mir-60 standard; RNA; CEL; 98 BP.
XX
AC MI0000031;
XX
DE Caenorhabditis elegans miR-60 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
RN [3]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [4]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; C32D5/16788-16691; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0015102"
FT /product="cel-miR-60-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [7]"
FT miRNA 61..83
FT /accession="MIMAT0000032"
FT /product="cel-miR-60-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], 454 [5], Illumina [6], CLIPseq
FT [7]"
XX
SQ Sequence 98 BP; 33 A; 18 C; 19 G; 0 T; 28 other;
cucgaaaacc gcuuguucuu gaacuggaag agugccauaa aaucaugaca aaguacguga 60
uauuaugcac auuuucuagu ucaagacuug agaaaucg 98
//
ID cel-mir-61 standard; RNA; CEL; 97 BP.
XX
AC MI0000032;
XX
DE Caenorhabditis elegans miR-61 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; F55A11/6731-6635; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0015103"
FT /product="cel-miR-61-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [6]"
FT miRNA 61..81
FT /accession="MIMAT0000033"
FT /product="cel-miR-61-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5], CLIPseq
FT [6]"
XX
SQ Sequence 97 BP; 19 A; 24 C; 24 G; 0 T; 30 other;
uuccauuauc gcugaaccuc gagauggguu acggggcuua guccuuccuc cguauggcaa 60
ugacuagaac cguuacucau cucgagguuu cggugau 97
//
ID cel-mir-63 standard; RNA; CEL; 104 BP.
XX
AC MI0000034;
XX
DE Caenorhabditis elegans miR-63 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; C16H3/369-266; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0015104"
FT /product="cel-miR-63-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [5]"
FT miRNA 61..84
FT /accession="MIMAT0000035"
FT /product="cel-miR-63-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4], CLIPseq
FT [5]"
XX
SQ Sequence 104 BP; 34 A; 21 C; 23 G; 0 T; 26 other;
ucaacaagca gacacaauuu cuaacucguc gguagucauc guucuagcug aaaaggacac 60
uaugacacug aagcgaguug gaaauagugg uucuacuuga gcaa 104
//
ID cel-mir-64 standard; RNA; CEL; 110 BP.
XX
AC MI0000035;
XX
DE Caenorhabditis elegans miR-64 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; Y48G9A/92980-93089; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0000036"
FT /product="cel-miR-64-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], 454 [3], Illumina
FT [4], CLIPseq [5]"
FT miRNA 68..88
FT /accession="MIMAT0015105"
FT /product="cel-miR-64-3p"
FT /evidence=experimental
FT /experiment="CLIPseq [5]"
XX
SQ Sequence 110 BP; 24 A; 35 C; 26 G; 0 T; 25 other;
cuccccgcug accucgccga auaugacacu gaagcguuac cgaaccguuu ucccacaccu 60
ggauucggug caacgaucag uggcaugcuc ggcuagcgcc aguuaaguau 110
//
ID cel-mir-65 standard; RNA; CEL; 100 BP.
XX
AC MI0000036;
XX
DE Caenorhabditis elegans miR-65 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; Y48G9A/93134-93233; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..40
FT /accession="MIMAT0000037"
FT /product="cel-miR-65-5p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2-3], 454 [4], Illumina
FT [5], CLIPseq [6]"
FT miRNA 58..78
FT /accession="MIMAT0015106"
FT /product="cel-miR-65-3p"
FT /evidence=experimental
FT /experiment="CLIPseq [6]"
XX
SQ Sequence 100 BP; 24 A; 27 C; 24 G; 0 T; 25 other;
auggagccuu cgccgauuau gacacugaag cguaaccgaa caccauauuu ugagauucug 60
cuacgcgcag ugccaugcuc ggcgcguugg cuccauuaaa 100
//
ID cel-mir-66 standard; RNA; CEL; 99 BP.
XX
AC MI0000037;
XX
DE Caenorhabditis elegans miR-66 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; Y48G9A/93240-93338; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0000038"
FT /product="cel-miR-66-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], 454 [3], Illumina
FT [4-5]"
FT miRNA 60..80
FT /accession="MIMAT0020315"
FT /product="cel-miR-66-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 99 BP; 32 A; 18 C; 23 G; 0 T; 26 other;
ccacaaaaau gccauacaug acacugauua gggaugugau gaauguuaag aucccgauca 60
aauuccuaac ggugucaaac auggcguaug ugguuguag 99
//
ID cel-mir-67 standard; RNA; CEL; 99 BP.
XX
AC MI0000038;
XX
DE Caenorhabditis elegans miR-67 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; EGAP1/4494-4396; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0020316"
FT /product="cel-miR-67-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 61..84
FT /accession="MIMAT0000039"
FT /product="cel-miR-67-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4,6],
FT CLIPseq [5]"
XX
SQ Sequence 99 BP; 30 A; 21 C; 17 G; 0 T; 31 other;
gaucaaagau ucgucgaucc gcucauucug ccgguuguua ugcuauuauc agauuaagca 60
ucacaaccuc cuagaaagag uagaucgauu uuaaaacuu 99
//
ID cel-mir-70 standard; RNA; CEL; 100 BP.
XX
AC MI0000041;
XX
DE Caenorhabditis elegans miR-70 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; T10H9/32413-32314; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..47
FT /accession="MIMAT0020317"
FT /product="cel-miR-70-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 62..84
FT /accession="MIMAT0000042"
FT /product="cel-miR-70-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5,7],
FT CLIPseq [6]"
XX
SQ Sequence 100 BP; 39 A; 13 C; 16 G; 0 T; 32 other;
ucaaaauaaa acgaugaaaa cuaucgaaau acuaucgacg aauaacacuu augaagaaau 60
guaauacguc guugguguuu ccauaguuug aauuguuuau 100
//
ID cel-mir-71 standard; RNA; CEL; 94 BP.
XX
AC MI0000042;
XX
DE Caenorhabditis elegans miR-71 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F16A11/5547-5454; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000043"
FT /product="cel-miR-71-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5,7],
FT CLIPseq [6]"
FT miRNA 53..73
FT /accession="MIMAT0015107"
FT /product="cel-miR-71-3p"
FT /evidence=experimental
FT /experiment="CLIPseq [6], Illumina [7]"
XX
SQ Sequence 94 BP; 19 A; 21 C; 28 G; 0 T; 26 other;
gucugcucug aacgaugaaa gacaugggua gugagacguc ggagccucgu cguaucacua 60
uucuguuuuu cgccgucggg aucgugaccu ggaa 94
//
ID cel-mir-72 standard; RNA; CEL; 99 BP.
XX
AC MI0000043;
XX
DE Caenorhabditis elegans miR-72 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
RN [3]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [4]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [8]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F53G2/2401-2495; .
XX
CC The expression of C. elegans miR-72 was confirmed by PCR amplification,
CC cloning and sequencing. The predicted hairpin precursor sequence presented
CC here is supported by conservation in C. elegans and C. briggsae
CC (MIR:MI0000751), and differs from that shown in [1] (Uwe Ohler, pers.
CC comm.). The extents of the dominant mature miRNA species are adjusted
CC here in accordance with a large scale cloning and sequencing study [5].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0000044"
FT /product="cel-miR-72-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], 454 [5], Illumina [6,8],
FT CLIPseq [7]"
FT miRNA 61..82
FT /accession="MIMAT0020318"
FT /product="cel-miR-72-3p"
FT /evidence=experimental
FT /experiment="Illumina [8]"
XX
SQ Sequence 99 BP; 26 A; 26 C; 24 G; 0 T; 23 other;
aggucccguc agagcuaggc aagauguugg cauagcugaa ugaucgcuau aacaacuauc 60
agcuucgcca cauucugcca cgcacugaug ugaggaccu 99
//
ID cel-mir-73 standard; RNA; CEL; 99 BP.
XX
AC MI0000044;
XX
DE Caenorhabditis elegans miR-73 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; T24D8/30624-30722; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..46
FT /accession="MIMAT0020319"
FT /product="cel-miR-73-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 62..84
FT /accession="MIMAT0000045"
FT /product="cel-miR-73-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5,7],
FT CLIPseq [6]"
XX
SQ Sequence 99 BP; 26 A; 23 C; 26 G; 0 T; 24 other;
cagugagagu cccacacacg acuggacuuc cauaucgagc cacagcuauc aacgaauuug 60
cuggcaagau guaggcaguu caguugugcg uuuauggag 99
//
ID cel-mir-74 standard; RNA; CEL; 97 BP.
XX
AC MI0000045;
XX
DE Caenorhabditis elegans miR-74 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; T24D8/30902-30998; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0020320"
FT /product="cel-miR-74-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 61..82
FT /accession="MIMAT0000046"
FT /product="cel-miR-74-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5,7],
FT CLIPseq [6]"
XX
SQ Sequence 97 BP; 28 A; 27 C; 17 G; 0 T; 25 other;
aaaugguuca aaaaacguuc gggcuuccau cucuuuccca gccuacaucu caaccugggc 60
uggcaagaaa uggcagucua cacguuuuuc aaccaaa 97
//
ID cel-mir-75 standard; RNA; CEL; 97 BP.
XX
AC MI0000046;
XX
DE Caenorhabditis elegans miR-75 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; T24D8/34313-34409; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0015108"
FT /product="cel-miR-75-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [5], Illumina [6]"
FT miRNA 61..82
FT /accession="MIMAT0000047"
FT /product="cel-miR-75-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4,6],
FT CLIPseq [5]"
XX
SQ Sequence 97 BP; 30 A; 18 C; 20 G; 0 T; 29 other;
uucuuguugc uuugaagaau ugcagucggu ugcaagcuua aauacaaauc cgaauuguua 60
uuaaagcuac caaccggcuu caagucugaa agagcag 97
//
ID cel-mir-76 standard; RNA; CEL; 97 BP.
XX
AC MI0000047;
XX
DE Caenorhabditis elegans miR-76 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; C44B11/10451-10547; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0020321"
FT /product="cel-miR-76-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 61..82
FT /accession="MIMAT0000048"
FT /product="cel-miR-76-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4,6],
FT CLIPseq [5]"
XX
SQ Sequence 97 BP; 27 A; 15 C; 23 G; 0 T; 32 other;
auuucagcuc cugucugggc uucacaauag ucgaauaccu uaaauuucaa aauuuggaua 60
uucguuguug augaagccuu gaugggggug agaaaga 97
//
ID cel-mir-77 standard; RNA; CEL; 100 BP.
XX
AC MI0000048;
XX
DE Caenorhabditis elegans miR-77 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; T21B4/29149-29248; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0020774"
FT /product="cel-miR-77-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 62..83
FT /accession="MIMAT0000049"
FT /product="cel-miR-77-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4,6],
FT CLIPseq [5]"
XX
SQ Sequence 100 BP; 25 A; 22 C; 25 G; 0 T; 28 other;
gcaucugcca aaccgcccgu uuggaugguu gugcucugag gaaauacgca cagaauguca 60
uuucaucagg ccauagcugu ccaaauuggu auagaguuug 100
//
ID cel-mir-79 standard; RNA; CEL; 98 BP.
XX
AC MI0000050;
XX
DE Caenorhabditis elegans miR-79 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [8]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; C12C8/13303-13400; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0020322"
FT /product="cel-miR-79-5p"
FT /evidence=experimental
FT /experiment="Illumina [8]"
FT miRNA 61..82
FT /accession="MIMAT0000051"
FT /product="cel-miR-79-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], PCR [4], 454 [5], Illumina
FT [6,8], CLIPseq [7]"
XX
SQ Sequence 98 BP; 23 A; 21 C; 20 G; 0 T; 34 other;
uaguagacau ucuccgaucu uuggugauuc agcuucaaug auuggcuaca gguuucuuuc 60
auaaagcuag guuaccaaag cucggcgucu ugaucuac 98
//
ID cel-mir-80 standard; RNA; CEL; 98 BP.
XX
AC MI0000051;
XX
DE Caenorhabditis elegans miR-80/miR-227 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; K01F9/1056-959; .
XX
CC mir-80 is conserved in C.briggsae (MIR:MI0000518) [1]. Reference [3]
CC reports the identification of miR-227, which appears to be expressed from
CC the 5' arm of the same precursor.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0000052"
FT /product="cel-miR-80-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [6], CLIPseq [7]"
FT miRNA 61..83
FT /accession="MIMAT0000053"
FT /product="cel-miR-80-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1], 454 [5], Illumina
FT [6], CLIPseq [7]"
XX
SQ Sequence 98 BP; 28 A; 22 C; 21 G; 0 T; 27 other;
auggacacuc guucgcucag cuuucgacau gauucugaac aauccgcaag cccauguugu 60
ugagaucauu aguugaaagc cgaaugauca gagauauc 98
//
ID cel-mir-81 standard; RNA; CEL; 108 BP.
XX
AC MI0000052;
XX
DE Caenorhabditis elegans miR-81 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
RN [3]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [4]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; T07D1/14195-14302; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0015109"
FT /product="cel-miR-81-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [7]"
FT miRNA 67..88
FT /accession="MIMAT0000054"
FT /product="cel-miR-81-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], 454 [5], Illumina [6], CLIPseq
FT [7]"
XX
SQ Sequence 108 BP; 25 A; 24 C; 26 G; 0 T; 33 other;
aucagugcca ucgugcccaa cagucgguuu ucaccgugau cugagagcaa uccaaaaaug 60
cuuuucugag aucaucguga aagcuaguug uuggucuacg ggcuuuug 108
//
ID cel-mir-82 standard; RNA; CEL; 97 BP.
XX
AC MI0000053;
XX
DE Caenorhabditis elegans miR-82 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; T07D1/18477-18381; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0020323"
FT /product="cel-miR-82-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 61..82
FT /accession="MIMAT0000055"
FT /product="cel-miR-82-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4,6],
FT CLIPseq [5]"
XX
SQ Sequence 97 BP; 26 A; 18 C; 20 G; 0 T; 33 other;
gaaauagguu cuuuuagcaa ccgguuuucu cugugaucua cagaaugaca gcuaaucguc 60
ugagaucauc gugaaagcca guuguuuuua ugaacuc 97
//
ID cel-mir-83 standard; RNA; CEL; 98 BP.
XX
AC MI0000054;
XX
DE Caenorhabditis elegans miR-83 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; C06A6/16005-16102; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0020775"
FT /product="cel-miR-83-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 61..82
FT /accession="MIMAT0000056"
FT /product="cel-miR-83-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5,7],
FT CLIPseq [6]"
XX
SQ Sequence 98 BP; 30 A; 24 C; 20 G; 0 T; 24 other;
agcaccacuc ggaaccacug aauuuaugug uguacuugac ggccaacaag agcaucgauc 60
uagcaccaua uaaauucagu aauuucgcgu cgagagcu 98
//
ID cel-mir-84 standard; RNA; CEL; 75 BP.
XX
AC MI0000055;
XX
DE Caenorhabditis elegans miR-84 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; B0395/3359-3285; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..32
FT /accession="MIMAT0000057"
FT /product="cel-miR-84-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], 454 [4], Illumina
FT [5,7], CLIPseq [6]"
FT miRNA 47..69
FT /accession="MIMAT0015110"
FT /product="cel-miR-84-3p"
FT /evidence=experimental
FT /experiment="CLIPseq [6], Illumina [7]"
XX
SQ Sequence 75 BP; 19 A; 13 C; 16 G; 0 T; 27 other;
guggcaucug agguaguaug uaauauugua gacugucuau aauguccaca auguuucaac 60
uaacucggcu guucu 75
//
ID cel-mir-85 standard; RNA; CEL; 106 BP.
XX
AC MI0000056;
XX
DE Caenorhabditis elegans miR-85 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F49E12/16076-16181; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0020324"
FT /product="cel-miR-85-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 65..88
FT /accession="MIMAT0000058"
FT /product="cel-miR-85-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5,7],
FT CLIPseq [6]"
XX
SQ Sequence 106 BP; 35 A; 15 C; 21 G; 0 T; 35 other;
uauagaauuu uggcgucgga gcccgauuuu ucaauaguuu gaaaccagug uacacauaaa 60
ugguuacaaa guauuugaaa agucgugcuc ugaaaaugaa uucuua 106
//
ID cel-mir-86 standard; RNA; CEL; 98 BP.
XX
AC MI0000057;
XX
DE Caenorhabditis elegans miR-86 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; Y56A3A/102935-102838; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000059"
FT /product="cel-miR-86-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5,7],
FT CLIPseq [6]"
FT miRNA 60..81
FT /accession="MIMAT0020776"
FT /product="cel-miR-86-3p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
XX
SQ Sequence 98 BP; 20 A; 25 C; 27 G; 0 T; 26 other;
cguguccacg ccgucuaagu gaaugcuuug ccacagucuu cgauguucug aaaugaagcc 60
ugggcucaga uucgcuuagg ccggaguuug acacggca 98
//
ID cel-mir-87 standard; RNA; CEL; 94 BP.
XX
AC MI0000058;
XX
DE Caenorhabditis elegans miR-87 stem-loop
XX
RN [1]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F10C2/16068-15975; .
XX
CC mir-87 is has found to be most abundant in the L1 stage of larval
CC development in Caenorhabditis elegans. mir-87 orthologues have been found
CC in C. briggsae, Drosophila melanogaster and humans [1]. The extents of
CC the dominant mature miRNA species are adjusted here in accordance with a
CC large scale cloning and sequencing study [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..40
FT /accession="MIMAT0020325"
FT /product="cel-miR-87-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 61..82
FT /accession="MIMAT0000060"
FT /product="cel-miR-87-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5,7],
FT CLIPseq [6]"
XX
SQ Sequence 94 BP; 17 A; 27 C; 26 G; 0 T; 24 other;
gguugugcca uccggccgcc ugauacuuuc gucucaaccu cgcugucaga uuggucguag 60
gugagcaaag uuucaggugu gccggaacac accc 94
//
ID cel-mir-90 standard; RNA; CEL; 98 BP.
XX
AC MI0000059;
XX
DE Caenorhabditis elegans miR-90 stem-loop
XX
RN [1]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; K01F9/9773-9676; .
XX
CC mir-90 is has found to be most abundant in the L1 stage of larval
CC development in Caenorhabditis elegans [1]. The extents of the dominant
CC mature miRNA species are adjusted here in accordance with a large scale
CC cloning and sequencing study [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0020326"
FT /product="cel-miR-90-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 62..84
FT /accession="MIMAT0000061"
FT /product="cel-miR-90-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5,7],
FT CLIPseq [6]"
XX
SQ Sequence 98 BP; 22 A; 24 C; 23 G; 0 T; 29 other;
gggcgccauu ucgagcggcu uucaacgacg auaucaaccg acaacucaca cuuuugcgug 60
uugauauguu guuugaaugc cccuugaauu ggaugcca 98
//
ID hsa-let-7a-1 standard; RNA; HSA; 80 BP.
XX
AC MI0000060;
XX
DE Homo sapiens let-7a-1 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [5]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [8]
RX PUBMED; 17989717.
RA Marton S, Garcia MR, Robello C, Persson H, Trajtenberg F, Pritsch O,
RA Rovira C, Naya H, Dighiero G, Cayota A;
RT "Small RNAs analysis in CLL reveals a deregulation of miRNA expression and
RT novel miRNA candidates of putative relevance in CLL pathogenesis";
RL Leukemia. 22:330-338(2008).
XX
RN [9]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR RFAM; RF00027; let-7.
DR TARGETS:PICTAR-VERT; hsa-let-7a; hsa-let-7a.
DR HGNC; 31476; MIRLET7A1.
DR ENTREZGENE; 406881; MIRLET7A1.
XX
CC let-7a-3p cloned in [6] has a 1 nt 3' extension (U), which is incompatible
CC with the genome sequence.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000062"
FT /product="hsa-let-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3,5-8], Northern [1], Illumina [9]"
FT miRNA 57..77
FT /accession="MIMAT0004481"
FT /product="hsa-let-7a-3p"
FT /evidence=experimental
FT /experiment="cloned [6]"
XX
SQ Sequence 80 BP; 21 A; 15 C; 19 G; 0 T; 25 other;
ugggaugagg uaguagguug uauaguuuua gggucacacc caccacuggg agauaacuau 60
acaaucuacu gucuuuccua 80
//
ID hsa-let-7a-2 standard; RNA; HSA; 72 BP.
XX
AC MI0000061;
XX
DE Homo sapiens let-7a-2 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [5]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [8]
RX PUBMED; 17989717.
RA Marton S, Garcia MR, Robello C, Persson H, Trajtenberg F, Pritsch O,
RA Rovira C, Naya H, Dighiero G, Cayota A;
RT "Small RNAs analysis in CLL reveals a deregulation of miRNA expression and
RT novel miRNA candidates of putative relevance in CLL pathogenesis";
RL Leukemia. 22:330-338(2008).
XX
RN [9]
RX PUBMED; 19015728.
RA Tzur G, Levy A, Meiri E, Barad O, Spector Y, Bentwich Z, Mizrahi L,
RA Katzenellenbogen M, Ben-Shushan E, Reubinoff BE, Galun E;
RT "MicroRNA expression patterns and function in endodermal differentiation
RT of human embryonic stem cells";
RL PLoS One. 3:e3726(2008).
XX
RN [10]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR RFAM; RF00027; let-7.
DR TARGETS:PICTAR-VERT; hsa-let-7a; hsa-let-7a.
DR HGNC; 31477; MIRLET7A2.
DR ENTREZGENE; 406882; MIRLET7A2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0000062"
FT /product="hsa-let-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3,5-8], Northern [1], Illumina
FT [10]"
FT miRNA 50..71
FT /accession="MIMAT0010195"
FT /product="hsa-let-7a-2-3p"
FT /evidence=experimental
FT /experiment="qRT-PCR [9]"
XX
SQ Sequence 72 BP; 20 A; 11 C; 18 G; 0 T; 23 other;
agguugaggu aguagguugu auaguuuaga auuacaucaa gggagauaac uguacagccu 60
ccuagcuuuc cu 72
//
ID hsa-let-7a-3 standard; RNA; HSA; 74 BP.
XX
AC MI0000062;
XX
DE Homo sapiens let-7a-3 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [5]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [8]
RX PUBMED; 17989717.
RA Marton S, Garcia MR, Robello C, Persson H, Trajtenberg F, Pritsch O,
RA Rovira C, Naya H, Dighiero G, Cayota A;
RT "Small RNAs analysis in CLL reveals a deregulation of miRNA expression and
RT novel miRNA candidates of putative relevance in CLL pathogenesis";
RL Leukemia. 22:330-338(2008).
XX
RN [9]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR RFAM; RF00027; let-7.
DR TARGETS:PICTAR-VERT; hsa-let-7a; hsa-let-7a.
DR HGNC; 31478; MIRLET7A3.
DR ENTREZGENE; 406883; MIRLET7A3.
XX
CC let-7a-3p cloned in [6] has a 1 nt 3' extension (U), which is incompatible
CC with the genome sequence.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0000062"
FT /product="hsa-let-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3,5-8], Northern [1], Illumina [9]"
FT miRNA 52..72
FT /accession="MIMAT0004481"
FT /product="hsa-let-7a-3p"
FT /evidence=experimental
FT /experiment="cloned [6]"
XX
SQ Sequence 74 BP; 14 A; 13 C; 21 G; 0 T; 26 other;
gggugaggua guagguugua uaguuugggg cucugcccug cuaugggaua acuauacaau 60
cuacugucuu uccu 74
//
ID hsa-let-7b standard; RNA; HSA; 83 BP.
XX
AC MI0000063;
XX
DE Homo sapiens let-7b stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR RFAM; RF00027; let-7.
DR TARGETS:PICTAR-VERT; hsa-let-7b; hsa-let-7b.
DR HGNC; 31479; MIRLET7B.
DR ENTREZGENE; 406884; MIRLET7B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000063"
FT /product="hsa-let-7b-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Northern [1]"
FT miRNA 60..81
FT /accession="MIMAT0004482"
FT /product="hsa-let-7b-3p"
FT /evidence=experimental
FT /experiment="cloned [4-5]"
XX
SQ Sequence 83 BP; 16 A; 18 C; 26 G; 0 T; 23 other;
cggggugagg uaguagguug ugugguuuca gggcagugau guugccccuc ggaagauaac 60
uauacaaccu acugccuucc cug 83
//
ID hsa-let-7c standard; RNA; HSA; 84 BP.
XX
AC MI0000064;
XX
DE Homo sapiens let-7c stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [5]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
RN [6]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR RFAM; RF00027; let-7.
DR TARGETS:PICTAR-VERT; hsa-let-7c; hsa-let-7c.
DR HGNC; 31480; MIRLET7C.
DR ENTREZGENE; 406885; MIRLET7C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0000064"
FT /product="hsa-let-7c-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1], Illumina [5-6]"
FT miRNA 56..77
FT /accession="MIMAT0026472"
FT /product="hsa-let-7c-3p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
XX
SQ Sequence 84 BP; 17 A; 16 C; 24 G; 0 T; 27 other;
gcauccgggu ugagguagua gguuguaugg uuuagaguua cacccuggga guuaacugua 60
caaccuucua gcuuuccuug gagc 84
//
ID hsa-let-7d standard; RNA; HSA; 87 BP.
XX
AC MI0000065;
XX
DE Homo sapiens let-7d stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [5]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR RFAM; RF00027; let-7.
DR TARGETS:PICTAR-VERT; hsa-let-7d; hsa-let-7d.
DR HGNC; 31481; MIRLET7D.
DR ENTREZGENE; 406886; MIRLET7D.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0000065"
FT /product="hsa-let-7d-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1], Illumina [5]"
FT miRNA 62..83
FT /accession="MIMAT0004484"
FT /product="hsa-let-7d-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 87 BP; 21 A; 16 C; 26 G; 0 T; 24 other;
ccuaggaaga gguaguaggu ugcauaguuu uagggcaggg auuuugccca caaggaggua 60
acuauacgac cugcugccuu ucuuagg 87
//
ID hsa-let-7e standard; RNA; HSA; 79 BP.
XX
AC MI0000066;
XX
DE Homo sapiens let-7e stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [5]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR RFAM; RF00027; let-7.
DR TARGETS:PICTAR-VERT; hsa-let-7e; hsa-let-7e.
DR HGNC; 31482; MIRLET7E.
DR ENTREZGENE; 406887; MIRLET7E.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0000066"
FT /product="hsa-let-7e-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1], Illumina [5]"
FT miRNA 53..74
FT /accession="MIMAT0004485"
FT /product="hsa-let-7e-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 79 BP; 18 A; 20 C; 25 G; 0 T; 16 other;
cccgggcuga gguaggaggu uguauaguug aggaggacac ccaaggagau cacuauacgg 60
ccuccuagcu uuccccagg 79
//
ID hsa-let-7f-1 standard; RNA; HSA; 87 BP.
XX
AC MI0000067;
XX
DE Homo sapiens let-7f-1 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [6]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR RFAM; RF00027; let-7.
DR TARGETS:PICTAR-VERT; hsa-let-7f; hsa-let-7f.
DR HGNC; 31483; MIRLET7F1.
DR ENTREZGENE; 406888; MIRLET7F1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000067"
FT /product="hsa-let-7f-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Northern [1], Illumina [6]"
FT miRNA 63..84
FT /accession="MIMAT0004486"
FT /product="hsa-let-7f-1-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 87 BP; 22 A; 13 C; 22 G; 0 T; 30 other;
ucagagugag guaguagauu guauaguugu gggguaguga uuuuacccug uucaggagau 60
aacuauacaa ucuauugccu ucccuga 87
//
ID hsa-let-7f-2 standard; RNA; HSA; 83 BP.
XX
AC MI0000068;
XX
DE Homo sapiens let-7f-2 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [6]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR RFAM; RF00027; let-7.
DR TARGETS:PICTAR-VERT; hsa-let-7f; hsa-let-7f.
DR HGNC; 31484; MIRLET7F2.
DR ENTREZGENE; 406889; MIRLET7F2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0000067"
FT /product="hsa-let-7f-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Northern [1], Illumina [6]"
FT miRNA 58..79
FT /accession="MIMAT0004487"
FT /product="hsa-let-7f-2-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 83 BP; 20 A; 15 C; 20 G; 0 T; 28 other;
ugugggauga gguaguagau uguauaguuu uagggucaua ccccaucuug gagauaacua 60
uacagucuac ugucuuuccc acg 83
//
ID hsa-mir-15a standard; RNA; HSA; 83 BP.
XX
AC MI0000069;
XX
DE Homo sapiens miR-15a stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12434020.
RA Calin GA, Dumitru CD, Shimizu M, Bichi R, Zupo S, Noch E, Aldler H, Rattan
RA S, Keating M, Rai K, Rassenti L, Kipps T, Negrini M, Bullrich F, Croce CM;
RT "Frequent deletions and down-regulation of micro- RNA genes miR15 and
RT miR16 at 13q14 in chronic lymphocytic leukemia";
RL Proc Natl Acad Sci U S A. 99:15524-15529(2002).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-15a; hsa-miR-15a.
DR HGNC; 31543; MIR15A.
DR ENTREZGENE; 406948; MIR15A.
XX
CC Reference [1] named this sequence miR-15. This is renamed miR-15a here to
CC avoid confusion with miR-15b (MIR:MI0000438) identified later by others.
CC This gene and miR-16 are clustered within 0.5 kb at 13q14. This region
CC has been shown to be deleted in more than half of B cell chronic
CC lymphocytic leukemias (CLL). Both miR-15a and miR-16 are deleted or
CC down-regulated in more than two thirds of CLL cases [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000068"
FT /product="hsa-miR-15a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-6], Northern [1]"
FT miRNA 51..72
FT /accession="MIMAT0004488"
FT /product="hsa-miR-15a-3p"
FT /evidence=experimental
FT /experiment="cloned [5]"
XX
SQ Sequence 83 BP; 26 A; 13 C; 22 G; 0 T; 22 other;
ccuuggagua aaguagcagc acauaauggu uuguggauuu ugaaaaggug caggccauau 60
ugugcugccu caaaaauaca agg 83
//
ID hsa-mir-16-1 standard; RNA; HSA; 89 BP.
XX
AC MI0000070;
XX
DE Homo sapiens miR-16-1 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [4]
RX PUBMED; 12434020.
RA Calin GA, Dumitru CD, Shimizu M, Bichi R, Zupo S, Noch E, Aldler H, Rattan
RA S, Keating M, Rai K, Rassenti L, Kipps T, Negrini M, Bullrich F, Croce CM;
RT "Frequent deletions and down-regulation of micro- RNA genes miR15 and
RT miR16 at 13q14 in chronic lymphocytic leukemia";
RL Proc Natl Acad Sci U S A. 99:15524-15529(2002).
XX
RN [5]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [6]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [7]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [8]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [9]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-16; hsa-miR-16.
DR HGNC; 31545; MIR16-1.
DR ENTREZGENE; 406950; MIR16-1.
XX
CC Human miR-16 has been cloned by independent groups [1,2]. This precursor
CC sequence maps to chromosome 13, and was named mir-16 in [1] and
CC mir-16-precursor-13 in [2]. Lim et al. reported 2 identical chromosome 13
CC loci, which appear to map to the same locus in subsequent genome
CC assemblies. This gene and miR-15a are clustered within 0.5 kb at 13q14.
CC This region has been shown to be deleted in more than half of B cell
CC chronic lymphocytic leukemias (CLL). Both miR-15a and miR-16 are deleted
CC or down-regulated in more than two thirds of CLL cases [3]. A second
CC putative mir-16 hairpin precursor is located on chromosome 3
CC (MIR:MI0000738).
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000069"
FT /product="hsa-miR-16-5p"
FT /evidence=experimental
FT /experiment="cloned [1,5,7-9], Northern [1,6]"
FT miRNA 56..77
FT /accession="MIMAT0004489"
FT /product="hsa-miR-16-1-3p"
FT /evidence=experimental
FT /experiment="cloned [8]"
XX
SQ Sequence 89 BP; 26 A; 16 C; 20 G; 0 T; 27 other;
gucagcagug ccuuagcagc acguaaauau uggcguuaag auucuaaaau uaucuccagu 60
auuaacugug cugcugaagu aagguugac 89
//
ID hsa-mir-17 standard; RNA; HSA; 84 BP.
XX
AC MI0000071;
XX
DE Homo sapiens miR-17 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [5]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [6]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [7]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [8]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR RFAM; RF00051; mir-17.
DR TARGETS:PICTAR-VERT; hsa-miR-17-3p; hsa-miR-17-3p.
DR TARGETS:PICTAR-VERT; hsa-miR-17-5p; hsa-miR-17-5p.
DR HGNC; 31547; MIR17.
DR ENTREZGENE; 406952; MIR17.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0000070"
FT /product="hsa-miR-17-5p"
FT /evidence=experimental
FT /experiment="cloned [2,5-8], Northern [4]"
FT miRNA 51..72
FT /accession="MIMAT0000071"
FT /product="hsa-miR-17-3p"
FT /evidence=experimental
FT /experiment="cloned [1,5,7-8], Northern [1]"
XX
SQ Sequence 84 BP; 24 A; 13 C; 23 G; 0 T; 24 other;
gucagaauaa ugucaaagug cuuacagugc agguagugau augugcaucu acugcaguga 60
aggcacuugu agcauuaugg ugac 84
//
ID hsa-mir-18a standard; RNA; HSA; 71 BP.
XX
AC MI0000072;
XX
DE Homo sapiens miR-18a stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [4]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 31548; MIR18A.
DR ENTREZGENE; 406953; MIR18A.
XX
CC This sequence maps to chromosome 13 and is named miR-18 precursor-13 in
CC reference [2]. The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [5]. The mature
CC sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [5].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0000072"
FT /product="hsa-miR-18a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-6], Northern [1]"
FT miRNA 47..69
FT /accession="MIMAT0002891"
FT /product="hsa-miR-18a-3p"
FT /evidence=experimental
FT /experiment="cloned [4-6]"
XX
SQ Sequence 71 BP; 17 A; 15 C; 17 G; 0 T; 22 other;
uguucuaagg ugcaucuagu gcagauagug aaguagauua gcaucuacug cccuaagugc 60
uccuucuggc a 71
//
ID hsa-mir-19a standard; RNA; HSA; 82 BP.
XX
AC MI0000073;
XX
DE Homo sapiens miR-19a stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-19a; hsa-miR-19a.
DR HGNC; 31574; MIR19A.
DR ENTREZGENE; 406979; MIR19A.
XX
CC This sequence maps to chromosome 13 and is named miR-19a precursor-13 in
CC reference [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0004490"
FT /product="hsa-miR-19a-5p"
FT /evidence=experimental
FT /experiment="cloned [4]"
FT miRNA 49..71
FT /accession="MIMAT0000073"
FT /product="hsa-miR-19a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-5], Northern [1]"
XX
SQ Sequence 82 BP; 22 A; 15 C; 20 G; 0 T; 25 other;
gcaguccucu guuaguuuug cauaguugca cuacaagaag aauguaguug ugcaaaucua 60
ugcaaaacug augguggccu gc 82
//
ID hsa-mir-19b-1 standard; RNA; HSA; 87 BP.
XX
AC MI0000074;
XX
DE Homo sapiens miR-19b-1 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [4]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [5]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [6]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [7]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [8]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [9]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-19b; hsa-miR-19b.
DR HGNC; 31575; MIR19B1.
DR ENTREZGENE; 406980; MIR19B1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0004491"
FT /product="hsa-miR-19b-1-5p"
FT /evidence=experimental
FT /experiment="cloned [8]"
FT miRNA 54..76
FT /accession="MIMAT0000074"
FT /product="hsa-miR-19b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3,6-9], Northern [1,5]"
XX
SQ Sequence 87 BP; 18 A; 16 C; 22 G; 0 T; 31 other;
cacuguucua ugguuaguuu ugcagguuug cauccagcug ugugauauuc ugcugugcaa 60
auccaugcaa aacugacugu gguagug 87
//
ID hsa-mir-19b-2 standard; RNA; HSA; 96 BP.
XX
AC MI0000075;
XX
DE Homo sapiens miR-19b-2 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [4]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [5]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [6]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [7]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [8]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [9]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-19b; hsa-miR-19b.
DR HGNC; 31576; MIR19B2.
DR ENTREZGENE; 406981; MIR19B2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0004492"
FT /product="hsa-miR-19b-2-5p"
FT /evidence=experimental
FT /experiment="cloned [8]"
FT miRNA 62..84
FT /accession="MIMAT0000074"
FT /product="hsa-miR-19b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3,6-9], Northern [1,5]"
XX
SQ Sequence 96 BP; 27 A; 14 C; 19 G; 0 T; 36 other;
acauugcuac uuacaauuag uuuugcaggu uugcauuuca gcguauauau guauaugugg 60
cugugcaaau ccaugcaaaa cugauuguga uaaugu 96
//
ID hsa-mir-20a standard; RNA; HSA; 71 BP.
XX
AC MI0000076;
XX
DE Homo sapiens miR-20a stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [5]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 31577; MIR20A.
DR ENTREZGENE; 406982; MIR20A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0000075"
FT /product="hsa-miR-20a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,4-7], Northern [1]"
FT miRNA 44..65
FT /accession="MIMAT0004493"
FT /product="hsa-miR-20a-3p"
FT /evidence=experimental
FT /experiment="cloned [6]"
XX
SQ Sequence 71 BP; 20 A; 11 C; 16 G; 0 T; 24 other;
guagcacuaa agugcuuaua gugcagguag uguuuaguua ucuacugcau uaugagcacu 60
uaaaguacug c 71
//
ID hsa-mir-21 standard; RNA; HSA; 72 BP.
XX
AC MI0000077;
XX
DE Homo sapiens miR-21 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [4]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [5]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [6]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [7]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [8]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [9]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [10]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-21; hsa-miR-21.
DR HGNC; 31586; MIR21.
DR ENTREZGENE; 406991; MIR21.
XX
CC Mourelatos et al. named this sequence miR-21 precursor-17 and also
CC reported the exact reverse complement of this predicted stem-loop sequence
CC and erroneously assigned the name miR-104 [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0000076"
FT /product="hsa-miR-21-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3,6-9], Northern [1,5], Illumina
FT [10]"
FT miRNA 46..66
FT /accession="MIMAT0004494"
FT /product="hsa-miR-21-3p"
FT /evidence=experimental
FT /experiment="cloned [8-9]"
XX
SQ Sequence 72 BP; 16 A; 15 C; 20 G; 0 T; 21 other;
ugucggguag cuuaucagac ugauguugac uguugaaucu cauggcaaca ccagucgaug 60
ggcugucuga ca 72
//
ID hsa-mir-22 standard; RNA; HSA; 85 BP.
XX
AC MI0000078;
XX
DE Homo sapiens miR-22 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [6]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-22; hsa-miR-22.
DR HGNC; 31599; MIR22.
DR ENTREZGENE; 407004; MIR22.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0004495"
FT /product="hsa-miR-22-5p"
FT /evidence=experimental
FT /experiment="cloned [4]"
FT miRNA 53..74
FT /accession="MIMAT0000077"
FT /product="hsa-miR-22-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Northern [1], Illumina [6]"
XX
SQ Sequence 85 BP; 17 A; 24 C; 22 G; 0 T; 22 other;
ggcugagccg caguaguucu ucaguggcaa gcuuuauguc cugacccagc uaaagcugcc 60
aguugaagaa cuguugcccu cugcc 85
//
ID hsa-mir-23a standard; RNA; HSA; 73 BP.
XX
AC MI0000079;
XX
DE Homo sapiens miR-23a stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 12808467.
RA Kawasaki H, Taira K;
RT "Hes1 is a target of microRNA-23 during retinoic-acid-induced neuronal
RT differentiation of NT2 cells";
RL Nature. 423:838-842(2003).
RC Retraction: Nature 426:100(2003)
XX
RN [4]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [5]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-23a; hsa-miR-23a.
DR HGNC; 31605; MIR23A.
DR ENTREZGENE; 407010; MIR23A.
XX
CC This miRNA was previously named miR-23 [1,2] but is renamed here to avoid
CC confusion with the more recently described miR-23b (MIR:MI0000439).
CC Kawasaki and Taira reported that miR-23 regulates the transcriptional
CC repressor Hairy enhancer of split (HES1) [3]. This finding was later
CC retracted after the discovery that the regulated gene was human homolog of
CC ES1 (HES1), whose function is unknown.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0004496"
FT /product="hsa-miR-23a-5p"
FT /evidence=experimental
FT /experiment="cloned [6-7]"
FT miRNA 45..65
FT /accession="MIMAT0000078"
FT /product="hsa-miR-23a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4-7], Northern [1]"
XX
SQ Sequence 73 BP; 13 A; 20 C; 22 G; 0 T; 18 other;
ggccggcugg gguuccuggg gaugggauuu gcuuccuguc acaaaucaca uugccaggga 60
uuuccaaccg acc 73
//
ID hsa-mir-24-1 standard; RNA; HSA; 68 BP.
XX
AC MI0000080;
XX
DE Homo sapiens miR-24-1 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [4]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [5]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [6]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [7]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [8]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [9]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-189; hsa-miR-189.
DR TARGETS:PICTAR-VERT; hsa-miR-24; hsa-miR-24.
DR HGNC; 31607; MIR24-1.
DR ENTREZGENE; 407012; MIR24-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000079"
FT /product="hsa-miR-24-1-5p"
FT /evidence=experimental
FT /experiment="cloned [7]"
FT /similarity="MI0000231"
FT miRNA 44..65
FT /accession="MIMAT0000080"
FT /product="hsa-miR-24-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4,6-8], Northern [1], Illumina [9]"
XX
SQ Sequence 68 BP; 16 A; 18 C; 16 G; 0 T; 18 other;
cuccggugcc uacugagcug auaucaguuc ucauuuuaca cacuggcuca guucagcagg 60
aacaggag 68
//
ID hsa-mir-24-2 standard; RNA; HSA; 73 BP.
XX
AC MI0000081;
XX
DE Homo sapiens miR-24-2 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [4]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [5]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [8]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-24; hsa-miR-24.
DR HGNC; 31608; MIR24-2.
DR ENTREZGENE; 407013; MIR24-2.
XX
CC mir-24-2 was identified independently by two groups. This sequence was
CC named miR-24 precursor-19 in reference [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0004497"
FT /product="hsa-miR-24-2-5p"
FT /evidence=experimental
FT /experiment="cloned [6]"
FT miRNA 50..71
FT /accession="MIMAT0000080"
FT /product="hsa-miR-24-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4-7], Northern [1], Illumina [8]"
XX
SQ Sequence 73 BP; 15 A; 20 C; 20 G; 0 T; 18 other;
cucugccucc cgugccuacu gagcugaaac acaguugguu uguguacacu ggcucaguuc 60
agcaggaaca ggg 73
//
ID hsa-mir-25 standard; RNA; HSA; 84 BP.
XX
AC MI0000082;
XX
DE Homo sapiens miR-25 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-25; hsa-miR-25.
DR HGNC; 31609; MIR25.
DR ENTREZGENE; 407014; MIR25.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0004498"
FT /product="hsa-miR-25-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 52..73
FT /accession="MIMAT0000081"
FT /product="hsa-miR-25-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1]"
XX
SQ Sequence 84 BP; 12 A; 22 C; 31 G; 0 T; 19 other;
ggccaguguu gagaggcgga gacuugggca auugcuggac gcugcccugg gcauugcacu 60
ugucucgguc ugacagugcc ggcc 84
//
ID hsa-mir-26a-1 standard; RNA; HSA; 77 BP.
XX
AC MI0000083;
XX
DE Homo sapiens miR-26a-1 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [4]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [5]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-26a; hsa-miR-26a.
DR HGNC; 31610; MIR26A1.
DR ENTREZGENE; 407015; MIR26A1.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [6].
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0000082"
FT /product="hsa-miR-26a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,4-7], Northern [1,3]"
FT miRNA 49..70
FT /accession="MIMAT0004499"
FT /product="hsa-miR-26a-1-3p"
FT /evidence=experimental
FT /experiment="cloned [6]"
XX
SQ Sequence 77 BP; 14 A; 19 C; 24 G; 0 T; 20 other;
guggccucgu ucaaguaauc caggauaggc ugugcagguc ccaaugggcc uauucuuggu 60
uacuugcacg gggacgc 77
//
ID hsa-mir-26b standard; RNA; HSA; 77 BP.
XX
AC MI0000084;
XX
DE Homo sapiens miR-26b stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-26b; hsa-miR-26b.
DR HGNC; 31612; MIR26B.
DR ENTREZGENE; 407017; MIR26B.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0000083"
FT /product="hsa-miR-26b-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Northern [1]"
FT miRNA 47..67
FT /accession="MIMAT0004500"
FT /product="hsa-miR-26b-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 77 BP; 13 A; 20 C; 23 G; 0 T; 21 other;
ccgggaccca guucaaguaa uucaggauag guugugugcu guccagccug uucuccauua 60
cuuggcucgg ggaccgg 77
//
ID hsa-mir-27a standard; RNA; HSA; 78 BP.
XX
AC MI0000085;
XX
DE Homo sapiens miR-27a stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-27a; hsa-miR-27a.
DR HGNC; 31613; MIR27A.
DR ENTREZGENE; 407018; MIR27A.
XX
CC This miRNA was previously named miR-27 [1,2] but is renamed here to avoid
CC confusion with the more recently described miR-27b (MIR:MI0000440).
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0004501"
FT /product="hsa-miR-27a-5p"
FT /evidence=experimental
FT /experiment="cloned [4]"
FT miRNA 51..71
FT /accession="MIMAT0000084"
FT /product="hsa-miR-27a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Northern [1]"
XX
SQ Sequence 78 BP; 15 A; 23 C; 24 G; 0 T; 16 other;
cugaggagca gggcuuagcu gcuugugagc aggguccaca ccaagucgug uucacagugg 60
cuaaguuccg ccccccag 78
//
ID hsa-mir-28 standard; RNA; HSA; 86 BP.
XX
AC MI0000086;
XX
DE Homo sapiens miR-28 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [4]
RX PUBMED; 18230126.
RA Afanasyeva EA, Hotz-Wagenblatt A, Glatting KH, Westermann F;
RT "New miRNAs cloned from neuroblastoma";
RL BMC Genomics. 9:52(2008).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-28; hsa-miR-28.
DR HGNC; 31615; MIR28.
DR ENTREZGENE; 407020; MIR28.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000085"
FT /product="hsa-miR-28-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1]"
FT miRNA 54..75
FT /accession="MIMAT0004502"
FT /product="hsa-miR-28-3p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
XX
SQ Sequence 86 BP; 16 A; 24 C; 21 G; 0 T; 25 other;
gguccuugcc cucaaggagc ucacagucua uugaguuacc uuucugacuu ucccacuaga 60
uugugagcuc cuggagggca ggcacu 86
//
ID hsa-mir-29a standard; RNA; HSA; 64 BP.
XX
AC MI0000087;
XX
DE Homo sapiens miR-29a stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [5]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [8]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR RFAM; RF00074; mir-29.
DR TARGETS:PICTAR-VERT; hsa-miR-29a; hsa-miR-29a.
DR HGNC; 31616; MIR29A.
DR ENTREZGENE; 407021; MIR29A.
XX
CC miR-29a was previously know as miR-29 here and in [1]. The mature
CC sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [6].
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0004503"
FT /product="hsa-miR-29a-5p"
FT /evidence=experimental
FT /experiment="cloned [6]"
FT miRNA 42..63
FT /accession="MIMAT0000086"
FT /product="hsa-miR-29a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3,5-7], Northern [1,4], Illumina
FT [8]"
XX
SQ Sequence 64 BP; 17 A; 10 C; 11 G; 0 T; 26 other;
augacugauu ucuuuuggug uucagaguca auauaauuuu cuagcaccau cugaaaucgg 60
uuau 64
//
ID hsa-mir-30a standard; RNA; HSA; 71 BP.
XX
AC MI0000088;
XX
DE Homo sapiens miR-30a stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [4]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-30a-3p; hsa-miR-30a-3p.
DR TARGETS:PICTAR-VERT; hsa-miR-30a-5p; hsa-miR-30a-5p.
DR HGNC; 31624; MIR30A.
DR ENTREZGENE; 407029; MIR30A.
XX
CC The mature sequences miR-30 [1] and miR-97 [2] appear to originate from
CC the same precursor. Subsequent data confirm that both arms of the
CC precursor appear to give rise to mature miRNA sequences (Pfeffer S, pers.
CC comm.). Landgraf et al. later showed that the 5' product is the
CC predominant one [5]. Related miRNAs are processed from the 5' arms of
CC other precursor loci (mir-30b, MIR:MI0000441; mir-30c-1, MIR:MI0000736;
CC mir-30c-2, MIR:MI0000254; mir-30d, MIR:MI0000255; mir-30e, MI0000749).
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000087"
FT /product="hsa-miR-30a-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4-6]"
FT miRNA 47..68
FT /accession="MIMAT0000088"
FT /product="hsa-miR-30a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4-5], Northern [1]"
XX
SQ Sequence 71 BP; 16 A; 17 C; 21 G; 0 T; 17 other;
gcgacuguaa acauccucga cuggaagcug ugaagccaca gaugggcuuu cagucggaug 60
uuugcagcug c 71
//
ID hsa-mir-31 standard; RNA; HSA; 71 BP.
XX
AC MI0000089;
XX
DE Homo sapiens miR-31 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-31; hsa-miR-31.
DR HGNC; 31630; MIR31.
DR ENTREZGENE; 407035; MIR31.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..28
FT /accession="MIMAT0000089"
FT /product="hsa-miR-31-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1]"
FT miRNA 44..65
FT /accession="MIMAT0004504"
FT /product="hsa-miR-31-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 71 BP; 18 A; 16 C; 20 G; 0 T; 17 other;
ggagaggagg caagaugcug gcauagcugu ugaacuggga accugcuaug ccaacauauu 60
gccaucuuuc c 71
//
ID hsa-mir-32 standard; RNA; HSA; 70 BP.
XX
AC MI0000090;
XX
DE Homo sapiens miR-32 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-32; hsa-miR-32.
DR HGNC; 31631; MIR32.
DR ENTREZGENE; 407036; MIR32.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000090"
FT /product="hsa-miR-32-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
FT miRNA 47..68
FT /accession="MIMAT0004505"
FT /product="hsa-miR-32-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 70 BP; 17 A; 11 C; 16 G; 0 T; 26 other;
ggagauauug cacauuacua aguugcaugu ugucacggcc ucaaugcaau uuagugugug 60
ugauauuuuc 70
//
ID hsa-mir-33a standard; RNA; HSA; 69 BP.
XX
AC MI0000091;
XX
DE Homo sapiens miR-33a stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-33; hsa-miR-33.
DR HGNC; 31634; MIR33A.
DR ENTREZGENE; 407039; MIR33A.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0000091"
FT /product="hsa-miR-33a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
FT miRNA 46..67
FT /accession="MIMAT0004506"
FT /product="hsa-miR-33a-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 69 BP; 13 A; 15 C; 18 G; 0 T; 23 other;
cuguggugca uuguaguugc auugcauguu cuggugguac ccaugcaaug uuuccacagu 60
gcaucacag 69
//
ID hsa-mir-92a-1 standard; RNA; HSA; 78 BP.
XX
AC MI0000093;
XX
DE Homo sapiens miR-92a-1 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [5]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [6]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [7]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [8]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-92; hsa-miR-92.
DR HGNC; 31643; MIR92A1.
DR ENTREZGENE; 407048; MIR92A1.
XX
CC Human miR-92a (previously named miR-92 here) has two predicted hairpin
CC precursor sequences: mir-92a-1 (MIR:MI0000093) on chromosome 13 (named
CC mir-92-13 in [1]) and mir-92a-2 (MIR:MI0000094) on chromosome X (named
CC mir-92-X in [1]). miR-92a has also been cloned from mouse embryonic stem
CC cells [2] and is predicted to be expressed from two closely related
CC precursor hairpins (MIR:MI0000719 and MIR:MI0000580). The mature sequence
CC shown here represents the most commonly cloned form from large-scale
CC cloning studies [7].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0004507"
FT /product="hsa-miR-92a-1-5p"
FT /evidence=experimental
FT /experiment="cloned [7-8]"
FT miRNA 48..69
FT /accession="MIMAT0000092"
FT /product="hsa-miR-92a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3,5-8], Northern [4]"
XX
SQ Sequence 78 BP; 10 A; 15 C; 23 G; 0 T; 30 other;
cuuucuacac agguugggau cgguugcaau gcuguguuuc uguaugguau ugcacuuguc 60
ccggccuguu gaguuugg 78
//
ID hsa-mir-92a-2 standard; RNA; HSA; 75 BP.
XX
AC MI0000094;
XX
DE Homo sapiens miR-92a-2 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [5]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [6]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [7]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [8]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-92; hsa-miR-92.
DR HGNC; 31644; MIR92A2.
DR ENTREZGENE; 407049; MIR92A2.
XX
CC Human miR-92a (previously named miR-92 here) has two predicted hairpin
CC precursor sequences: mir-92a-1 (MIR:MI0000093) on chromosome 13 (named
CC mir-92-13 in [1]) and mir-92a-2 (MIR:MI0000094) on chromosome X (named
CC mir-92-X in [1]). miR-92a has also been cloned from mouse embryonic stem
CC cells [2] and is predicted to be expressed from two closely related
CC precursor hairpins (MIR:MI0000719 and MIR:MI0000580). The mature sequence
CC shown here represents the most commonly cloned form from large-scale
CC cloning studies [7].
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0004508"
FT /product="hsa-miR-92a-2-5p"
FT /evidence=experimental
FT /experiment="cloned [7]"
FT miRNA 48..69
FT /accession="MIMAT0000092"
FT /product="hsa-miR-92a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3,5-8], Northern [4]"
XX
SQ Sequence 75 BP; 14 A; 14 C; 20 G; 0 T; 27 other;
ucaucccugg guggggauuu guugcauuac uuguguucua uauaaaguau ugcacuuguc 60
ccggccugug gaaga 75
//
ID hsa-mir-93 standard; RNA; HSA; 80 BP.
XX
AC MI0000095;
XX
DE Homo sapiens miR-93 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [3]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [4]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-93; hsa-miR-93.
DR HGNC; 31645; MIR93.
DR ENTREZGENE; 407050; MIR93.
XX
CC Mourelatos et al. identified two copies of this sequence mapping to
CC chromosome 7, and assigned the names mir-93-7.1 and mir-93-7.2 [1].
CC Subsequent genome assemblies suggest the presence of only one miR-93 locus
CC on chromosome 7. The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [5]. The 5' end of
CC the miRNA may be offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0000093"
FT /product="hsa-miR-93-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-6], Northern [4]"
FT miRNA 50..71
FT /accession="MIMAT0004509"
FT /product="hsa-miR-93-3p"
FT /evidence=experimental
FT /experiment="cloned [5]"
XX
SQ Sequence 80 BP; 14 A; 25 C; 23 G; 0 T; 18 other;
cugggggcuc caaagugcug uucgugcagg uagugugauu acccaaccua cugcugagcu 60
agcacuuccc gagcccccgg 80
//
ID hsa-mir-96 standard; RNA; HSA; 78 BP.
XX
AC MI0000098;
XX
DE Homo sapiens miR-96 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-96; hsa-miR-96.
DR HGNC; 31648; MIR96.
DR ENTREZGENE; 407053; MIR96.
XX
CC This sequence is localised to chromosome 7 and was named mir-96-7 in
CC reference [1]. The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0000095"
FT /product="hsa-miR-96-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
FT miRNA 52..73
FT /accession="MIMAT0004510"
FT /product="hsa-miR-96-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 78 BP; 16 A; 18 C; 19 G; 0 T; 25 other;
uggccgauuu uggcacuagc acauuuuugc uugugucucu ccgcucugag caaucaugug 60
cagugccaau augggaaa 78
//
ID hsa-mir-98 standard; RNA; HSA; 119 BP.
XX
AC MI0000100;
XX
DE Homo sapiens miR-98 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [4]
RX PUBMED; 22282338.
RA Voellenkle C, Rooij Jv, Guffanti A, Brini E, Fasanaro P, Isaia E, Croft L,
RA David M, Capogrossi MC, Moles A, Felsani A, Martelli F;
RT "Deep-sequencing of endothelial cells exposed to hypoxia reveals the
RT complexity of known and novel microRNAs";
RL RNA. 18:472-484(2012).
XX
DR RFAM; RF00027; let-7.
DR TARGETS:PICTAR-VERT; hsa-miR-98; hsa-miR-98.
DR HGNC; 31649; MIR98.
DR ENTREZGENE; 407054; MIR98.
XX
CC This sequence is localised to chromosome X and was named mir-98-X in
CC reference [1]. The predicted stem-loop precursor sequence is clearly
CC related to let-7.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0000096"
FT /product="hsa-miR-98-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT miRNA 80..101
FT /accession="MIMAT0022842"
FT /product="hsa-miR-98-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 119 BP; 30 A; 19 C; 32 G; 0 T; 38 other;
aggauucugc ucaugccagg gugagguagu aaguuguauu guuguggggu agggauauua 60
ggccccaauu agaagauaac uauacaacuu acuacuuucc cuggugugug gcauauuca 119
//
ID hsa-mir-99a standard; RNA; HSA; 81 BP.
XX
AC MI0000101;
XX
DE Homo sapiens miR-99a stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR RFAM; RF00104; mir-10.
DR TARGETS:PICTAR-VERT; hsa-miR-99a; hsa-miR-99a.
DR HGNC; 31650; MIR99A.
DR ENTREZGENE; 407055; MIR99A.
XX
CC This sequence is localised to chromosome 21 and was named mir-99-21 in
CC reference [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0000097"
FT /product="hsa-miR-99a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
FT miRNA 50..71
FT /accession="MIMAT0004511"
FT /product="hsa-miR-99a-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 81 BP; 16 A; 20 C; 23 G; 0 T; 22 other;
cccauuggca uaaacccgua gauccgaucu uguggugaag uggaccgcac aagcucgcuu 60
cuaugggucu gugucagugu g 81
//
ID hsa-mir-100 standard; RNA; HSA; 80 BP.
XX
AC MI0000102;
XX
DE Homo sapiens miR-100 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [4]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR RFAM; RF00104; mir-10.
DR TARGETS:PICTAR-VERT; hsa-miR-100; hsa-miR-100.
DR HGNC; 31487; MIR100.
DR ENTREZGENE; 406892; MIR100.
XX
CC This sequence is localised to chromosome 11 and was named mir-100-11 in
CC reference [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0000098"
FT /product="hsa-miR-100-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4]"
FT miRNA 48..69
FT /accession="MIMAT0004512"
FT /product="hsa-miR-100-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 80 BP; 18 A; 18 C; 19 G; 0 T; 25 other;
ccuguugcca caaacccgua gauccgaacu ugugguauua guccgcacaa gcuuguaucu 60
auagguaugu gucuguuagg 80
//
ID hsa-mir-101-1 standard; RNA; HSA; 75 BP.
XX
AC MI0000103;
XX
DE Homo sapiens miR-101-1 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-101; hsa-miR-101.
DR HGNC; 31488; MIR101-1.
DR ENTREZGENE; 406893; MIR101-1.
XX
CC Reference [1] reports two miR-101 precursor hairpin structures in human,
CC on chromosome 1 (MIR:MI0000103) and 9 (MIR:MI0000739, named
CC mir-101-precursor-9 in [1]). The mature sequence shown here represents
CC the most commonly cloned form from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004513"
FT /product="hsa-miR-101-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT miRNA 47..67
FT /accession="MIMAT0000099"
FT /product="hsa-miR-101-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4]"
XX
SQ Sequence 75 BP; 19 A; 15 C; 19 G; 0 T; 22 other;
ugcccuggcu caguuaucac agugcugaug cugucuauuc uaaagguaca guacugugau 60
aacugaagga uggca 75
//
ID hsa-mir-29b-1 standard; RNA; HSA; 81 BP.
XX
AC MI0000105;
XX
DE Homo sapiens miR-29b-1 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR MIR; MI0000143; mmu-mir-29b-1.
DR RFAM; RF00074; mir-29.
DR TARGETS:PICTAR-VERT; hsa-miR-29b; hsa-miR-29b.
DR HGNC; 31619; MIR29B1.
DR ENTREZGENE; 407024; MIR29B1.
XX
CC Mourelatos et al. identified two copies of this sequence mapping to
CC chromosome 7, and assigned the names mir-102-7.1 and mir-102-7.2 [1].
CC Subsequent genome assemblies suggest the presence of only one miR-102
CC locus on chromosome 7. Human miR-102 is a homologue of mouse miR-29b
CC (MIR:MI0000143) and so has been renamed here for consistency.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..33
FT /accession="MIMAT0004514"
FT /product="hsa-miR-29b-1-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT miRNA 51..73
FT /accession="MIMAT0000100"
FT /product="hsa-miR-29b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [2]"
XX
SQ Sequence 81 BP; 19 A; 10 C; 22 G; 0 T; 30 other;
cuucaggaag cugguuucau auggugguuu agauuuaaau agugauuguc uagcaccauu 60
ugaaaucagu guucuugggg g 81
//
ID hsa-mir-29b-2 standard; RNA; HSA; 81 BP.
XX
AC MI0000107;
XX
DE Homo sapiens miR-29b-2 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR MIR; MI0000712; mmu-mir-29b-2.
DR RFAM; RF00074; mir-29.
DR TARGETS:PICTAR-VERT; hsa-miR-29b; hsa-miR-29b.
DR HGNC; 31620; MIR29B2.
DR ENTREZGENE; 407025; MIR29B2.
XX
CC This sequence was named mir-102-1 in reference [1]. Human miR-102 is a
CC homologue of mouse miR-29b (MIR:MI0000143) and so has been renamed here
CC for consistency.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004515"
FT /product="hsa-miR-29b-2-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 52..74
FT /accession="MIMAT0000100"
FT /product="hsa-miR-29b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [2]"
XX
SQ Sequence 81 BP; 17 A; 14 C; 18 G; 0 T; 32 other;
cuucuggaag cugguuucac augguggcuu agauuuuucc aucuuuguau cuagcaccau 60
uugaaaucag uguuuuagga g 81
//
ID hsa-mir-103a-2 standard; RNA; HSA; 78 BP.
XX
AC MI0000108;
XX
DE Homo sapiens miR-103a-2 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [5]
RX PUBMED; 19144710.
RA Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G;
RT "Identification of novel Epstein-Barr virus microRNA genes from
RT nasopharyngeal carcinomas";
RL J Virol. 83:3333-3341(2009).
XX
RN [6]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-103; hsa-miR-103.
DR HGNC; 31491; MIR103-2.
DR ENTREZGENE; 406896; MIR103A2.
XX
CC This sequence was localised to chromosome 20 and named mir-103-20 in
CC reference [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0009196"
FT /product="hsa-miR-103a-2-5p"
FT /evidence=experimental
FT /experiment="454 [5]"
FT miRNA 48..70
FT /accession="MIMAT0000101"
FT /product="hsa-miR-103a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [2], Illumina [6]"
XX
SQ Sequence 78 BP; 19 A; 17 C; 18 G; 0 T; 24 other;
uugugcuuuc agcuucuuua cagugcugcc uuguagcauu caggucaagc agcauuguac 60
agggcuauga aagaacca 78
//
ID hsa-mir-103a-1 standard; RNA; HSA; 78 BP.
XX
AC MI0000109;
XX
DE Homo sapiens miR-103a-1 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [5]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-103; hsa-miR-103.
DR HGNC; 31490; MIR103-1.
DR ENTREZGENE; 406895; MIR103A1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0037306"
FT /product="hsa-miR-103a-1-5p"
FT /evidence=not_experimental
FT miRNA 48..70
FT /accession="MIMAT0000101"
FT /product="hsa-miR-103a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [2], Illumina [5]"
XX
SQ Sequence 78 BP; 16 A; 18 C; 20 G; 0 T; 24 other;
uacugcccuc ggcuucuuua cagugcugcc uuguugcaua uggaucaagc agcauuguac 60
agggcuauga aggcauug 78
//
ID hsa-mir-105-1 standard; RNA; HSA; 81 BP.
XX
AC MI0000111;
XX
DE Homo sapiens miR-105-1 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-105; hsa-miR-105.
DR HGNC; 31492; MIR105-1.
DR ENTREZGENE; 406897; MIR105-1.
XX
CC Mourelatos et al. [1] reported two identical predicted stem loop sequences
CC located on chromosome X, which they named mir-105-X.1 and mir-105-X.2.
CC These sequences have been renamed mir-105-1 (MIR:MI0000111) and mir-105-2
CC (MIR:MI0000112) here. mir-105-2 differs slightly from that published in
CC [1] and deposited in EMBL (EMBL:AF480548). The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0000102"
FT /product="hsa-miR-105-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT miRNA 51..72
FT /accession="MIMAT0004516"
FT /product="hsa-miR-105-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 81 BP; 14 A; 19 C; 24 G; 0 T; 24 other;
ugugcaucgu ggucaaaugc ucagacuccu gugguggcug cucaugcacc acggauguuu 60
gagcaugugc uacggugucu a 81
//
ID hsa-mir-105-2 standard; RNA; HSA; 81 BP.
XX
AC MI0000112;
XX
DE Homo sapiens miR-105-2 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-105; hsa-miR-105.
DR HGNC; 31493; MIR105-2.
DR ENTREZGENE; 406898; MIR105-2.
XX
CC Mourelatos et al. [1] reported two identical predicted stem loop sequences
CC located on chromosome X, which they named mir-105-X.1 and mir-105-X.2.
CC These sequences have been renamed mir-105-1 (MIR:MI0000111) and mir-105-2
CC (MIR:MI0000112) here. mir-105-2 differs slightly from that published in
CC [1] and deposited in EMBL (EMBL:AF480548). The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0000102"
FT /product="hsa-miR-105-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT miRNA 51..72
FT /accession="MIMAT0004516"
FT /product="hsa-miR-105-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 81 BP; 14 A; 17 C; 24 G; 0 T; 26 other;
ugugcaucgu ggucaaaugc ucagacuccu gugguggcug cuuaugcacc acggauguuu 60
gagcaugugc uauggugucu a 81
//
ID hsa-mir-106a standard; RNA; HSA; 81 BP.
XX
AC MI0000113;
XX
DE Homo sapiens miR-106a stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR MIR; MI0000071; hsa-mir-17.
DR RFAM; RF00051; mir-17.
DR TARGETS:PICTAR-VERT; hsa-miR-106a; hsa-miR-106a.
DR HGNC; 31494; MIR106A.
DR ENTREZGENE; 406899; MIR106A.
XX
CC This miRNA was not cloned in reference [1], rather it was identified by
CC homology to miR-91 (MIR:MI0000071). This sequence is localised to
CC chromosome X and was named mir-106-X in [1]. Mouse and human miR-106a
CC (MIR:MI0000406 and MIR:MI0000113) differ at two positions but the
CC precursor sequences are clearly closely related. The sequences are also
CC related to mir-17 (MIR:MI0000071 and MIR:MI0000687). The mature sequence
CC shown here represents the most commonly cloned form from large-scale
CC cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0000103"
FT /product="hsa-miR-106a-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT miRNA 50..71
FT /accession="MIMAT0004517"
FT /product="hsa-miR-106a-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 81 BP; 21 A; 17 C; 17 G; 0 T; 26 other;
ccuuggccau guaaaagugc uuacagugca gguagcuuuu ugagaucuac ugcaauguaa 60
gcacuucuua cauuaccaug g 81
//
ID hsa-mir-107 standard; RNA; HSA; 81 BP.
XX
AC MI0000114;
XX
DE Homo sapiens miR-107 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR MIR; MI0000108; .
DR TARGETS:PICTAR-VERT; hsa-miR-107; hsa-miR-107.
DR HGNC; 31496; MIR107.
DR ENTREZGENE; 406901; MIR107.
XX
CC This miRNA was identified by homology to miR-103 [1], and later verified
CC by cloning in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..72
FT /accession="MIMAT0000104"
FT /product="hsa-miR-107"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 81 BP; 18 A; 19 C; 19 G; 0 T; 25 other;
cucucugcuu ucagcuucuu uacaguguug ccuuguggca uggaguucaa gcagcauugu 60
acagggcuau caaagcacag a 81
//
ID hsa-mir-16-2 standard; RNA; HSA; 81 BP.
XX
AC MI0000115;
XX
DE Homo sapiens miR-16-2 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [3]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [4]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [5]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [6]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [7]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [8]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-16; hsa-miR-16.
DR HGNC; 31546; MIR16-2.
DR ENTREZGENE; 406951; MIR16-2.
XX
CC This entry represents a second putative hairpin precursor sequence for
CC miR-16, located on chromosome 3 (see also MIR:MI0000070). The sequence
CC was previously named mir-16-3 here and in references [1] and [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0000069"
FT /product="hsa-miR-16-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4,6-8], Northern [3]"
FT miRNA 53..74
FT /accession="MIMAT0004518"
FT /product="hsa-miR-16-2-3p"
FT /evidence=experimental
FT /experiment="cloned [7]"
XX
SQ Sequence 81 BP; 25 A; 15 C; 15 G; 0 T; 26 other;
guuccacucu agcagcacgu aaauauuggc guagugaaau auauauuaaa caccaauauu 60
acugugcugc uuuaguguga c 81
//
ID dme-mir-1 standard; RNA; DME; 91 BP.
XX
AC MI0000116;
XX
DE Drosophila melanogaster miR-1 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR RFAM; RF00103; mir-1.
DR TARGETS:MIRTE; miR-1; miR-1.
DR TARGETS:PICTAR-FLY; dme-miR-1; dme-miR-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0020779"
FT /product="dme-miR-1-5p"
FT /evidence=not_experimental
FT miRNA 56..77
FT /accession="MIMAT0000105"
FT /product="dme-miR-1-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-2], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000116"
XX
SQ Sequence 91 BP; 27 A; 15 C; 21 G; 0 T; 28 other;
uucagccuuu gagaguucca ugcuuccuug cauucaauag uuauauucaa gcauauggaa 60
uguaaagaag uauggagcga aaucuggcga g 91
//
ID dme-mir-2a-1 standard; RNA; DME; 76 BP.
XX
AC MI0000117;
XX
DE Drosophila melanogaster miR-2a-1 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14691535.
RA Stark A, Brennecke J, Russell RB, Cohen SM;
RT "Identification of Drosophila MicroRNA targets";
RL PLoS Biol. 1:E60(2003).
XX
RN [3]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [4]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [5]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [6]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR RFAM; RF00047; mir-2.
DR TARGETS:MIRTE; miR-2a; miR-2a.
DR TARGETS:PICTAR-FLY; dme-miR-2a; dme-miR-2a.
XX
CC Stark et al. [2] have identified targets for miR-2 in Drosophila using
CC computational prediction followed by experimental validation. miR-2
CC regulates the proapoptotic genes reaper, grim and sickle, suggesting that
CC it may be involved in the control of apoptosis.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0020780"
FT /product="dme-miR-2a-1-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0000106"
FT /product="dme-miR-2a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4], Northern [1,3], 454 [5-6],
FT Illumina [6]"
FT /similarity="MI0000117"
XX
SQ Sequence 76 BP; 15 A; 18 C; 21 G; 0 T; 22 other;
gcugggcucu caaagugguu gugaaaugca uuuccgcuuu gcgcggcaua ucacagccag 60
cuuugaugag cuuagc 76
//
ID dme-mir-2a-2 standard; RNA; DME; 72 BP.
XX
AC MI0000118;
XX
DE Drosophila melanogaster miR-2a-2 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14691535.
RA Stark A, Brennecke J, Russell RB, Cohen SM;
RT "Identification of Drosophila MicroRNA targets";
RL PLoS Biol. 1:E60(2003).
XX
RN [3]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [4]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [5]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [6]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR RFAM; RF00047; mir-2.
DR TARGETS:PICTAR-FLY; dme-miR-2a; dme-miR-2a.
XX
CC Stark et al. [2] have identified targets for miR-2 in Drosophila using
CC computational prediction followed by experimental validation. miR-2
CC regulates the proapoptotic genes reaper, grim and sickle, suggesting that
CC it may be involved in the control of apoptosis.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..28
FT /accession="MIMAT0020781"
FT /product="dme-miR-2a-2-5p"
FT /evidence=not_experimental
FT miRNA 44..66
FT /accession="MIMAT0000106"
FT /product="dme-miR-2a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4], Northern [1,3], 454 [5-6],
FT Illumina [6]"
FT /similarity="MI0000118"
XX
SQ Sequence 72 BP; 21 A; 16 C; 16 G; 0 T; 19 other;
aucuaagccu caucaagugg uugugauaug gauacccaac gcauaucaca gccagcuuug 60
augagcuagg au 72
//
ID dme-mir-2b-1 standard; RNA; DME; 77 BP.
XX
AC MI0000119;
XX
DE Drosophila melanogaster miR-2b-1 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14691535.
RA Stark A, Brennecke J, Russell RB, Cohen SM;
RT "Identification of Drosophila MicroRNA targets";
RL PLoS Biol. 1:E60(2003).
XX
RN [3]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [4]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [5]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [6]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR RFAM; RF00047; mir-2.
DR TARGETS:MIRTE; miR-2b; miR-2b.
DR TARGETS:PICTAR-FLY; dme-miR-2b; dme-miR-2b.
XX
CC Stark et al. [2] have identified targets for miR-2 in Drosophila using
CC computational prediction followed by experimental validation. miR-2
CC regulates the proapoptotic genes reaper, grim and sickle, suggesting that
CC it may be involved in the control of apoptosis.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0020782"
FT /product="dme-miR-2b-1-5p"
FT /evidence=not_experimental
FT miRNA 48..70
FT /accession="MIMAT0000107"
FT /product="dme-miR-2b-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4], Northern [1,3], 454 [5-6],
FT Illumina [6]"
FT /similarity="MI0000119"
XX
SQ Sequence 77 BP; 20 A; 17 C; 18 G; 0 T; 22 other;
cuucaacugu cuucaaagug gcagugacau guugucaaca auauucauau cacagccagc 60
uuugaggagc guugcgg 77
//
ID dme-mir-2b-2 standard; RNA; DME; 83 BP.
XX
AC MI0000120;
XX
DE Drosophila melanogaster miR-2b-2 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14691535.
RA Stark A, Brennecke J, Russell RB, Cohen SM;
RT "Identification of Drosophila MicroRNA targets";
RL PLoS Biol. 1:E60(2003).
XX
RN [3]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [4]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [5]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [6]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR RFAM; RF00047; mir-2.
DR MIRTE; miR-2b; miR-2b.
DR TARGETS:PICTAR-FLY; dme-miR-2b; dme-miR-2b.
XX
CC Stark et al. [2] have identified targets for miR-2 in Drosophila using
CC computational prediction followed by experimental validation. miR-2
CC regulates the proapoptotic genes reaper, grim and sickle, suggesting that
CC it may be involved in the control of apoptosis.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0020783"
FT /product="dme-miR-2b-2-5p"
FT /evidence=not_experimental
FT miRNA 54..76
FT /accession="MIMAT0000107"
FT /product="dme-miR-2b-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4], Northern [1,3], 454 [5-6],
FT Illumina [6]"
FT /similarity="MI0000120"
XX
SQ Sequence 83 BP; 18 A; 16 C; 19 G; 0 T; 30 other;
uugugucauu cuucaaagug guugugaaau guuugccuuu uuaugccuau ucauaucaca 60
gccagcuuug aggagcgacg cga 83
//
ID dme-mir-3 standard; RNA; DME; 69 BP.
XX
AC MI0000121;
XX
DE Drosophila melanogaster miR-3 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-3; miR-3.
DR TARGETS:PICTAR-FLY; dme-miR-3; dme-miR-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0020784"
FT /product="dme-miR-3-5p"
FT /evidence=not_experimental
FT miRNA 43..64
FT /accession="MIMAT0000108"
FT /product="dme-miR-3-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-3], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000121"
XX
SQ Sequence 69 BP; 16 A; 15 C; 16 G; 0 T; 22 other;
gauccuggga ugcaucuugu gcaguuaugu uucaaucuca caucacuggg caaagugugu 60
cucaagauc 69
//
ID dme-mir-4 standard; RNA; DME; 81 BP.
XX
AC MI0000122;
XX
DE Drosophila melanogaster miR-4 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-4; miR-4.
DR TARGETS:PICTAR-FLY; dme-miR-4; dme-miR-4.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..37
FT /accession="MIMAT0020785"
FT /product="dme-miR-4-5p"
FT /evidence=not_experimental
FT miRNA 49..69
FT /accession="MIMAT0000109"
FT /product="dme-miR-4-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-3], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000122"
XX
SQ Sequence 81 BP; 17 A; 15 C; 19 G; 0 T; 30 other;
uugcaauuag uuucuuuggu cguccagccu uaggugauuu uuccggucau aaagcuagac 60
aaccauugaa guucguugug g 81
//
ID dme-mir-5 standard; RNA; DME; 69 BP.
XX
AC MI0000123;
XX
DE Drosophila melanogaster miR-5 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-5; miR-5.
DR TARGETS:PICTAR-FLY; dme-miR-5; dme-miR-5.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..27
FT /accession="MIMAT0000110"
FT /product="dme-miR-5-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-2], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000123"
FT miRNA 43..65
FT /accession="MIMAT0020786"
FT /product="dme-miR-5-3p"
FT /evidence=not_experimental
XX
SQ Sequence 69 BP; 20 A; 12 C; 13 G; 0 T; 24 other;
gcuaaaagga acgaucguug ugauaugagu uguuuccuaa cauaucacag ugauuuuccu 60
uuauaacgc 69
//
ID dme-mir-6-1 standard; RNA; DME; 82 BP.
XX
AC MI0000124;
XX
DE Drosophila melanogaster miR-6-1 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-6; miR-6.
DR TARGETS:PICTAR-FLY; dme-miR-6; dme-miR-6.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0020787"
FT /product="dme-miR-6-1-5p"
FT /evidence=not_experimental
FT miRNA 52..73
FT /accession="MIMAT0000111"
FT /product="dme-miR-6-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-2], 454 [4],
FT Illumina [5]"
XX
SQ Sequence 82 BP; 23 A; 11 C; 16 G; 0 T; 32 other;
uuuaauguag agggaauagu ugcugugcug uaaguuaaua uaccauaucu auaucacagu 60
ggcuguucuu uuuguaccua aa 82
//
ID dme-mir-6-2 standard; RNA; DME; 74 BP.
XX
AC MI0000125;
XX
DE Drosophila melanogaster miR-6-2 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:PICTAR-FLY; dme-miR-6; dme-miR-6.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0020788"
FT /product="dme-miR-6-2-5p"
FT /evidence=not_experimental
FT miRNA 48..69
FT /accession="MIMAT0000111"
FT /product="dme-miR-6-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-2], 454 [4],
FT Illumina [5]"
FT /similarity="MI0000125"
XX
SQ Sequence 74 BP; 20 A; 13 C; 14 G; 0 T; 27 other;
uaacccaagg gaacuucugc ugcugauaua uuauugaaaa acuacuauau cacaguggcu 60
guucuuuuug guug 74
//
ID dme-mir-6-3 standard; RNA; DME; 80 BP.
XX
AC MI0000126;
XX
DE Drosophila melanogaster miR-6-3 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:PICTAR-FLY; dme-miR-6; dme-miR-6.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0020789"
FT /product="dme-miR-6-3-5p"
FT /evidence=not_experimental
FT miRNA 53..74
FT /accession="MIMAT0000111"
FT /product="dme-miR-6-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-2], 454 [4],
FT Illumina [5]"
FT /similarity="MI0000126"
XX
SQ Sequence 80 BP; 22 A; 11 C; 18 G; 0 T; 29 other;
caaaaagaag ggaacgguug cugaugaugu aguuugaaac ucucacaauu uauaucacag 60
uggcuguucu uuuuuguuug 80
//
ID dme-mir-7 standard; RNA; DME; 88 BP.
XX
AC MI0000127;
XX
DE Drosophila melanogaster miR-7 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14691535.
RA Stark A, Brennecke J, Russell RB, Cohen SM;
RT "Identification of Drosophila MicroRNA targets";
RL PLoS Biol. 1:E60(2003).
XX
RN [3]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [4]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [5]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [6]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR RFAM; RF00053; mir-7.
DR TARGETS:MIRTE; miR-7; miR-7.
DR TARGETS:PICTAR-FLY; dme-miR-7; dme-miR-7.
DR ENTREZGENE; 3772237; mir-7.
XX
CC Stark et al. [2] have identified targets for miR-7 in Drosophila using
CC computational prediction followed by experimental validation. miR-7
CC regulates a family of Notch targets including the Enhancer of split and
CC Bearded complex genes Tom and m4, and the basic helix-loop-helix
CC transcriptional repressors HLHm3 and hairy.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0000112"
FT /product="dme-miR-7-5p"
FT /evidence=experimental
FT /experiment="cloned [1,4], Northern [1,3-4], 454 [5-6],
FT Illumina [6]"
FT /similarity="MI0000127"
FT miRNA 55..76
FT /accession="MIMAT0020790"
FT /product="dme-miR-7-3p"
FT /evidence=not_experimental
XX
SQ Sequence 88 BP; 19 A; 14 C; 20 G; 0 T; 35 other;
gagugcauuc cguauggaag acuagugauu uuguuguuug gucuuuggua auaacaauaa 60
aucccuuguc uucuuacggc gugcauuu 88
//
ID dme-mir-8 standard; RNA; DME; 87 BP.
XX
AC MI0000128;
XX
DE Drosophila melanogaster miR-8 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR ENTREZGENE; 3771764; mir-8.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0020791"
FT /product="dme-miR-8-5p"
FT /evidence=not_experimental
FT miRNA 53..75
FT /accession="MIMAT0000113"
FT /product="dme-miR-8-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-3], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000128"
XX
SQ Sequence 87 BP; 22 A; 20 C; 16 G; 0 T; 29 other;
aaggacaucu guucacaucu uaccgggcag cauuagaucc uuuuuauaac ucuaauacug 60
ucagguaaag augucguccg uguccuu 87
//
ID dme-mir-9a standard; RNA; DME; 78 BP.
XX
AC MI0000129;
XX
DE Drosophila melanogaster miR-9a stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-9a; miR-9a.
DR TARGETS:PICTAR-FLY; dme-miR-9a; dme-miR-9a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..32
FT /accession="MIMAT0000114"
FT /product="dme-miR-9a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-3], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000129"
FT miRNA 49..70
FT /accession="MIMAT0020792"
FT /product="dme-miR-9a-3p"
FT /evidence=not_experimental
XX
SQ Sequence 78 BP; 23 A; 11 C; 16 G; 0 T; 28 other;
gcuauguugu cuuugguuau cuagcuguau gagugauaaa uaacgucaua aagcuagcuu 60
accgaaguua auauuagc 78
//
ID dme-mir-10 standard; RNA; DME; 77 BP.
XX
AC MI0000130;
XX
DE Drosophila melanogaster miR-10 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR RFAM; RF00104; mir-10.
DR TARGETS:MIRTE; miR-10; miR-10.
DR TARGETS:PICTAR-FLY; dme-miR-10; dme-miR-10.
XX
CC The first cloning experiments identified the mature miR-10 from the 5' arm
CC of the D. melanogaster precursor [1,3]. High-throughput sequencing later
CC showed that the sequence from the 3' arm dominates [4-5].
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0000115"
FT /product="dme-miR-10-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-3], 454 [4-5],
FT Illumina [5]"
FT miRNA 49..71
FT /accession="MIMAT0012531"
FT /product="dme-miR-10-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-3], 454 [4-5],
FT Illumina [5]"
XX
SQ Sequence 77 BP; 18 A; 14 C; 18 G; 0 T; 27 other;
ccacgucuac ccuguagauc cgaauuuguu uuauacuagc uuuaaggaca aauucgguuc 60
uagagagguu ugugugg 77
//
ID dme-mir-11 standard; RNA; DME; 75 BP.
XX
AC MI0000131;
XX
DE Drosophila melanogaster miR-11 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-11; miR-11.
DR TARGETS:PICTAR-FLY; dme-miR-11; dme-miR-11.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0020793"
FT /product="dme-miR-11-5p"
FT /evidence=not_experimental
FT miRNA 48..68
FT /accession="MIMAT0000116"
FT /product="dme-miR-11-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-2], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000131"
XX
SQ Sequence 75 BP; 16 A; 20 C; 17 G; 0 T; 22 other;
gcacuuguca agaacuuucu cugugacccg cguguacuua aaagccgcau cacagucuga 60
guucuugcug agugc 75
//
ID dme-mir-12 standard; RNA; DME; 74 BP.
XX
AC MI0000132;
XX
DE Drosophila melanogaster miR-12 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-12; miR-12.
DR TARGETS:PICTAR-FLY; dme-miR-12; dme-miR-12.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0000117"
FT /product="dme-miR-12-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-2], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000132"
FT miRNA 49..70
FT /accession="MIMAT0020794"
FT /product="dme-miR-12-3p"
FT /evidence=not_experimental
XX
SQ Sequence 74 BP; 20 A; 17 C; 15 G; 0 T; 22 other;
uacgguugag uauuacauca gguacuggug ugccuuaaau ccaacaacca guacuuaugu 60
cauacuacgc cgug 74
//
ID dme-mir-13a standard; RNA; DME; 75 BP.
XX
AC MI0000133;
XX
DE Drosophila melanogaster miR-13a stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR RFAM; RF00047; mir-2.
DR TARGETS:MIRTE; miR-13a; miR-13a.
DR TARGETS:PICTAR-FLY; dme-miR-13a; dme-miR-13a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0020795"
FT /product="dme-miR-13a-5p"
FT /evidence=not_experimental
FT miRNA 48..69
FT /accession="MIMAT0000118"
FT /product="dme-miR-13a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1-2], 454 [3-4],
FT Illumina [4]"
FT /similarity="MI0000133"
XX
SQ Sequence 75 BP; 20 A; 15 C; 14 G; 0 T; 26 other;
uacguaacuc cucaaagggu ugugaaaugu cgacuauuau cuacucauau cacagccauu 60
uugaugaguu ucgug 75
//
ID dme-mir-13b-1 standard; RNA; DME; 68 BP.
XX
AC MI0000134;
XX
DE Drosophila melanogaster miR-13b-1 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR RFAM; RF00047; mir-2.
DR TARGETS:MIRTE; miR-13b; miR-13b.
DR TARGETS:PICTAR-FLY; dme-miR-13b; dme-miR-13b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..30
FT /accession="MIMAT0020796"
FT /product="dme-miR-13b-1-5p"
FT /evidence=not_experimental
FT miRNA 43..64
FT /accession="MIMAT0000119"
FT /product="dme-miR-13b-3p"
FT /evidence=experimental
FT /experiment="Northern [1-2], cloned [3], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000134"
XX
SQ Sequence 68 BP; 19 A; 12 C; 12 G; 0 T; 25 other;
ccaugucguu aaaauguuug ugaacuuaug uauucacaau cauaucacag ccauuuugac 60
gaguuugg 68
//
ID dme-mir-13b-2 standard; RNA; DME; 70 BP.
XX
AC MI0000135;
XX
DE Drosophila melanogaster miR-13b-2 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR RFAM; RF00047; mir-2.
DR TARGETS:PICTAR-FLY; dme-miR-13b; dme-miR-13b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..31
FT /accession="MIMAT0020797"
FT /product="dme-miR-13b-2-5p"
FT /evidence=not_experimental
FT miRNA 46..67
FT /accession="MIMAT0000119"
FT /product="dme-miR-13b-3p"
FT /evidence=experimental
FT /experiment="Northern [1-2], cloned [3], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000135"
XX
SQ Sequence 70 BP; 19 A; 12 C; 15 G; 0 T; 24 other;
uauuaacgcg ucaaaaugac ugugagcuau guggauuuga cuucauauca cagccauuuu 60
gacgaguuug 70
//
ID dme-mir-14 standard; RNA; DME; 63 BP.
XX
AC MI0000136;
XX
DE Drosophila melanogaster miR-14 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12725740.
RA Xu P, Vernooy SY, Guo M, Hay BA;
RT "The Drosophila microRNA Mir-14 suppresses cell death and is required for
RT normal fat metabolism";
RL Curr Biol. 13:790-795(2003).
XX
RN [3]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [4]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [5]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [6]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-14; miR-14.
DR TARGETS:PICTAR-FLY; dme-miR-14; dme-miR-14.
XX
CC miR-14 has been reported to act as a cell death repressor and regulator of
CC fat metabolism [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0020798"
FT /product="dme-miR-14-5p"
FT /evidence=not_experimental
FT miRNA 41..62
FT /accession="MIMAT0000120"
FT /product="dme-miR-14-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4], Northern [3], 454 [5-6],
FT Illumina [6]"
FT /similarity="MI0000136"
XX
SQ Sequence 63 BP; 13 A; 13 C; 15 G; 0 T; 22 other;
ugugggagcg agacggggac ucacugugcu uauuaaauag ucagucuuuu ucucucuccu 60
aua 63
//
ID mmu-let-7g standard; RNA; MMU; 88 BP.
XX
AC MI0000137;
XX
DE Mus musculus let-7g stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00027; let-7.
DR MGI; 2676800; Mirlet7g.
DR ENTREZGENE; 387249; Mirlet7g.
XX
CC The mature sequence reported in [1] has a 3' terminal A residue, which is
CC incompatible with the reported precursor sequence from [1] and in this
CC entry. The mature sequence shown here represents the most commonly cloned
CC form from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000121"
FT /product="mmu-let-7g-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
FT miRNA 63..84
FT /accession="MIMAT0004519"
FT /product="mmu-let-7g-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 88 BP; 21 A; 20 C; 26 G; 0 T; 21 other;
ccaggcugag guaguaguuu guacaguuug agggucuaug auaccacccg guacaggaga 60
uaacuguaca ggccacugcc uugccagg 88
//
ID mmu-let-7i standard; RNA; MMU; 85 BP.
XX
AC MI0000138;
XX
DE Mus musculus let-7i stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00027; let-7.
DR MGI; 2676802; Mirlet7i.
DR ENTREZGENE; 387251; Mirlet7i.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000122"
FT /product="mmu-let-7i-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
FT miRNA 62..83
FT /accession="MIMAT0004520"
FT /product="mmu-let-7i-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 85 BP; 13 A; 17 C; 29 G; 0 T; 26 other;
cuggcugagg uaguaguuug ugcuguuggu cggguuguga cauugcccgc uguggagaua 60
acugcgcaag cuacugccuu gcuag 85
//
ID mmu-mir-1a-1 standard; RNA; MMU; 77 BP.
XX
AC MI0000139;
XX
DE Mus musculus miR-1a-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00103; mir-1.
DR MGI; 2676869; Mir1-1.
DR ENTREZGENE; 387136; Mir1a-1.
XX
CC Lagos-Quintana et al. [1] reported the cloning of miR-1b, miR-1c and
CC miR-1d. The mature processed miR sequences are identical apart from the
CC 3' residues (A in mir-1b, C in mir-1c and UU in mir-1d). The 3' residues
CC of both miR-1b and miR-1c conflict with the predicted stem-loop precursor
CC sequence shown here and these sequences are not found in current
CC assemblies of human and mouse genomes. It is suggested that polyA
CC polymerase may add 1-3 nts to the 3' end of the mature transcript (Tom
CC Tuschl, pers. comm.). The common 21 nts of the 3 reported miR sequences
CC have been rationalised here and named miR-1. There are 2 pairs of
CC orthologous putative hairpin precursor structures named mir-1-1 (human
CC MIR:MI0000651, mouse MIR:MI0000139), and mir-1-2 (human MIR:MI0000437,
CC mouse MIR:MI0000652). The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..32
FT /accession="MIMAT0016979"
FT /product="mmu-miR-1a-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 49..70
FT /accession="MIMAT0000123"
FT /product="mmu-miR-1a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3]"
XX
SQ Sequence 77 BP; 23 A; 14 C; 16 G; 0 T; 24 other;
gcuugggaca cauacuucuu uauaugccca uaugaaccug cuaagcuaug gaauguaaag 60
aaguauguau uucaggc 77
//
ID mmu-mir-15b standard; RNA; MMU; 64 BP.
XX
AC MI0000140;
XX
DE Mus musculus miR-15b stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [5]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [8]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676842; Mir15b.
DR ENTREZGENE; 387175; Mir15b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0000124"
FT /product="mmu-miR-15b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4-6], Illumina [7-8]"
FT miRNA 42..63
FT /accession="MIMAT0004521"
FT /product="mmu-miR-15b-3p"
FT /evidence=experimental
FT /experiment="cloned [6], Illumina [7-8]"
XX
SQ Sequence 64 BP; 18 A; 14 C; 12 G; 0 T; 20 other;
cuguagcagc acaucauggu uuacauacua cagucaagau gcgaaucauu auuugcugcu 60
cuag 64
//
ID mmu-mir-23b standard; RNA; MMU; 74 BP.
XX
AC MI0000141;
XX
DE Mus musculus miR-23b stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676898; Mir23b.
DR ENTREZGENE; 387217; Mir23b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0016980"
FT /product="mmu-miR-23b-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 46..66
FT /accession="MIMAT0000125"
FT /product="mmu-miR-23b-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], Illumina [5-6]"
XX
SQ Sequence 74 BP; 17 A; 17 C; 19 G; 0 T; 21 other;
ggcugcuugg guuccuggca ugcugauuug ugacuugaga uuaaaaucac auugccaggg 60
auuaccacgc aacc 74
//
ID mmu-mir-27b standard; RNA; MMU; 73 BP.
XX
AC MI0000142;
XX
DE Mus musculus miR-27b stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676903; Mir27b.
DR ENTREZGENE; 387221; Mir27b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0004522"
FT /product="mmu-miR-27b-5p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
FT miRNA 49..69
FT /accession="MIMAT0000126"
FT /product="mmu-miR-27b-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Illumina [6-7]"
XX
SQ Sequence 73 BP; 14 A; 14 C; 21 G; 0 T; 24 other;
aggugcagag cuuagcugau uggugaacag ugauugguuu ccgcuuuguu cacaguggcu 60
aaguucugca ccu 73
//
ID mmu-mir-29b-1 standard; RNA; MMU; 71 BP.
XX
AC MI0000143;
XX
DE Mus musculus miR-29b-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00074; mir-29.
DR MGI; 2676905; Mir29b-1.
DR ENTREZGENE; 387223; Mir29b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0004523"
FT /product="mmu-miR-29b-1-5p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
FT miRNA 47..69
FT /accession="MIMAT0000127"
FT /product="mmu-miR-29b-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3,5], Illumina [6-7]"
XX
SQ Sequence 71 BP; 19 A; 8 C; 17 G; 0 T; 27 other;
aggaagcugg uuucauaugg ugguuuagau uuaaauagug auugucuagc accauuugaa 60
aucaguguuc u 71
//
ID mmu-mir-30a standard; RNA; MMU; 71 BP.
XX
AC MI0000144;
XX
DE Mus musculus miR-30a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676907; Mir30a.
DR ENTREZGENE; 387225; Mir30a.
XX
CC Landgraf et al. confirm that the 5' mature miRNA product is the
CC predominant one [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000128"
FT /product="mmu-miR-30a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4], Illumina [5-6]"
FT miRNA 47..68
FT /accession="MIMAT0000129"
FT /product="mmu-miR-30a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], Illumina [5-6]"
XX
SQ Sequence 71 BP; 17 A; 17 C; 20 G; 0 T; 17 other;
gcgacuguaa acauccucga cuggaagcug ugaagccaca aaugggcuuu cagucggaug 60
uuugcagcug c 71
//
ID mmu-mir-30b standard; RNA; MMU; 96 BP.
XX
AC MI0000145;
XX
DE Mus musculus miR-30b stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676908; Mir30b.
DR ENTREZGENE; 387226; Mir30b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0000130"
FT /product="mmu-miR-30b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 59..80
FT /accession="MIMAT0004524"
FT /product="mmu-miR-30b-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 96 BP; 22 A; 20 C; 23 G; 0 T; 31 other;
cuaagccaag uuucaguuca uguaaacauc cuacacucag cugucauaca ugcguuggcu 60
gggaugugga uguuuacguc agcugucuug gaguau 96
//
ID mmu-mir-99a standard; RNA; MMU; 65 BP.
XX
AC MI0000146;
XX
DE Mus musculus miR-99a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676912; Mir99a.
DR ENTREZGENE; 387229; Mir99a.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0000131"
FT /product="mmu-miR-99a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 42..62
FT /accession="MIMAT0016981"
FT /product="mmu-miR-99a-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 65 BP; 13 A; 15 C; 19 G; 0 T; 18 other;
cauaaacccg uagauccgau cuugugguga aguggaccgc gcaagcucgu uucuaugggu 60
cugug 65
//
ID mmu-mir-99b standard; RNA; MMU; 70 BP.
XX
AC MI0000147;
XX
DE Mus musculus miR-99b stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676913; Mir99b.
DR ENTREZGENE; 387230; Mir99b.
XX
CC Expression of this miRNA in mouse was independently verified in the brain
CC [1], embryonic stem cells [2] and testes [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000132"
FT /product="mmu-miR-99b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
FT miRNA 45..66
FT /accession="MIMAT0004525"
FT /product="mmu-miR-99b-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 70 BP; 10 A; 26 C; 21 G; 0 T; 13 other;
ggcacccacc cguagaaccg accuugcggg gccuucgccg cacacaagcu cgugucugug 60
gguccguguc 70
//
ID mmu-mir-101a standard; RNA; MMU; 83 BP.
XX
AC MI0000148;
XX
DE Mus musculus miR-101a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676803; Mir101a.
DR ENTREZGENE; 387143; Mir101a.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0004526"
FT /product="mmu-miR-101a-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT miRNA 51..71
FT /accession="MIMAT0000133"
FT /product="mmu-miR-101a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
XX
SQ Sequence 83 BP; 21 A; 19 C; 22 G; 0 T; 21 other;
aggcugcccu ggcucaguua ucacagugcu gaugcugucc auucuaaagg uacaguacug 60
ugauaacuga aggauggcag cca 83
//
ID mmu-mir-124-3 standard; RNA; MMU; 68 BP.
XX
AC MI0000150;
XX
DE Mus musculus miR-124-3 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618704; Mirn124a-3.
DR ENTREZGENE; 723951; Mir124a-3.
XX
CC miR-124 was cloned from mouse brain [1] and embryonic stem cells [2] by
CC independent groups. There are 3 predicted precursor hairpin sequences:
CC mir-124-1 (MIR:MI0000716) on chromosome 14, mir-124-2 (MIR:MI0000717) on
CC chromosome 3, and mir-124-3 (previously known as miR-124a here,
CC MIR:MI0000150) on chromosome 2. All have closely related predicted human
CC homologues (MIR:MI0000443, MIR:MI0000444 and MIR:MI0000445).
CC Lagos-Quintana et al. also report a mature miRNA sequence miR-124b, with a
CC G insertion at position 12 [1]. miR-124b is not found in either the mouse
CC or human genome assemblies.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0004527"
FT /product="mmu-miR-124-5p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
FT miRNA 44..63
FT /accession="MIMAT0000134"
FT /product="mmu-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
XX
SQ Sequence 68 BP; 18 A; 15 C; 17 G; 0 T; 18 other;
cucugcgugu ucacagcgga ccuugauuua augucuauac aauuaaggca cgcggugaau 60
gccaagag 68
//
ID mmu-mir-125a standard; RNA; MMU; 68 BP.
XX
AC MI0000151;
XX
DE Mus musculus miR-125a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676809; Mir125a.
DR ENTREZGENE; 387235; Mir125a.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..29
FT /accession="MIMAT0000135"
FT /product="mmu-miR-125a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 44..65
FT /accession="MIMAT0004528"
FT /product="mmu-miR-125a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 68 BP; 11 A; 17 C; 24 G; 0 T; 16 other;
cugggucccu gagacccuuu aaccugugag gacguccagg gucacaggug agguucuugg 60
gagccugg 68
//
ID mmu-mir-125b-2 standard; RNA; MMU; 71 BP.
XX
AC MI0000152;
XX
DE Mus musculus miR-125b-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00052; lin-4.
DR MGI; 3618706; Mir125b-2.
DR ENTREZGENE; 723952; Mir125b-2.
XX
CC Mouse miR-125b was cloned from mouse brain tissues in [1]. There are 2
CC predicted hairpin precursor structures in the mouse genome, each has a
CC closely related human homologue [2] (mir-125b-1, MIR:MI0000725;
CC mir-125b-2, MIR:MI0000152; the latter was previously named mir-125b here).
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000136"
FT /product="mmu-miR-125b-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], Illumina [5-6]"
FT miRNA 46..67
FT /accession="MIMAT0004529"
FT /product="mmu-miR-125b-2-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 71 BP; 17 A; 17 C; 17 G; 0 T; 20 other;
gccuaguccc ugagacccua acuugugagg uauuuuagua acaucacaag ucagguucuu 60
gggaccuagg c 71
//
ID mmu-mir-126a standard; RNA; MMU; 73 BP.
XX
AC MI0000153;
XX
DE Mus musculus miR-126a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676811; Mir126.
DR ENTREZGENE; 387145; Mir126.
XX
CC miR-123 identified in [1] was later found to originate from the same
CC precursor as miR-126 and was hence renamed miR-126-5p.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0000137"
FT /product="mmu-miR-126a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4], Illumina [5-6]"
FT miRNA 46..67
FT /accession="MIMAT0000138"
FT /product="mmu-miR-126a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], Illumina [5-6]"
XX
SQ Sequence 73 BP; 19 A; 17 C; 16 G; 0 T; 21 other;
ugacagcaca uuauuacuuu ugguacgcgc ugugacacuu caaacucgua ccgugaguaa 60
uaaugcgcgg uca 73
//
ID mmu-mir-127 standard; RNA; MMU; 70 BP.
XX
AC MI0000154;
XX
DE Mus musculus miR-127 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 15854907.
RA Davis E, Caiment F, Tordoir X, Cavaille J, Ferguson-Smith A, Cockett N,
RA Georges M, Charlier C;
RT "RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11
RT locus";
RL Curr Biol. 15:743-749(2005).
XX
RN [5]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [8]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676812; Mir127.
DR ENTREZGENE; 387146; Mir127.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [6].
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0004530"
FT /product="mmu-miR-127-5p"
FT /evidence=experimental
FT /experiment="cloned [6], Illumina [7-8]"
FT miRNA 43..64
FT /accession="MIMAT0000139"
FT /product="mmu-miR-127-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3,5-6], PCR [4], Illumina [7-8]"
XX
SQ Sequence 70 BP; 14 A; 18 C; 22 G; 0 T; 16 other;
ccagccugcu gaagcucaga gggcucugau ucagaaagau caucggaucc gucugagcuu 60
ggcuggucgg 70
//
ID mmu-mir-128-1 standard; RNA; MMU; 70 BP.
XX
AC MI0000155;
XX
DE Mus musculus miR-128-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676813; Mir128-1.
DR ENTREZGENE; 387147; Mir128-1.
XX
CC The most commonly cloned mature sequences derived from the previously
CC annotated mir-128a and mir-128b were shown by Landgraf et al to be
CC identical [3]. The sequences are therefore renamed mir-128-1 and
CC mir-128-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0016982"
FT /product="mmu-miR-128-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 44..64
FT /accession="MIMAT0000140"
FT /product="mmu-miR-128-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
XX
SQ Sequence 70 BP; 12 A; 16 C; 19 G; 0 T; 23 other;
guuggauucg gggccguagc acugucugag agguuuacau uucucacagu gaaccggucu 60
cuuuuucagc 70
//
ID mmu-mir-130a standard; RNA; MMU; 64 BP.
XX
AC MI0000156;
XX
DE Mus musculus miR-130a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [5]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [8]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676816; Mir130a.
DR ENTREZGENE; 387149; Mir130a.
XX
CC This sequence was named miR-130 in reference [1], but is renamed here to
CC avoid confusion with miR-130b (MIR:MI0000408).
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..24
FT /accession="MIMAT0016983"
FT /product="mmu-miR-130a-5p"
FT /evidence=experimental
FT /experiment="Illumina [8]"
FT miRNA 42..63
FT /accession="MIMAT0000141"
FT /product="mmu-miR-130a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4-6], Northern [2], Illumina [7]"
XX
SQ Sequence 64 BP; 16 A; 14 C; 15 G; 0 T; 19 other;
gagcucuuuu cacauugugc uacugucuaa cguguaccga gcagugcaau guuaaaaggg 60
cauc 64
//
ID mmu-mir-9-2 standard; RNA; MMU; 72 BP.
XX
AC MI0000157;
XX
DE Mus musculus miR-9-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619442; Mir9-2.
DR ENTREZGENE; 723967; Mir9-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0000142"
FT /product="mmu-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4], Illumina [5-6]"
FT miRNA 45..66
FT /accession="MIMAT0000143"
FT /product="mmu-miR-9-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4], Illumina [5-6]"
XX
SQ Sequence 72 BP; 22 A; 9 C; 15 G; 0 T; 26 other;
guuguuaucu uugguuaucu agcuguauga guguauuggu cuucauaaag cuagauaacc 60
gaaaguaaaa ac 72
//
ID mmu-mir-132 standard; RNA; MMU; 66 BP.
XX
AC MI0000158;
XX
DE Mus musculus miR-132 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676817; Mir132.
DR ENTREZGENE; 387150; Mir132.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0016984"
FT /product="mmu-miR-132-5p"
FT /evidence=experimental
FT /experiment="454 [4], Illumina [5]"
FT miRNA 42..63
FT /accession="MIMAT0000144"
FT /product="mmu-miR-132-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3,5]"
XX
SQ Sequence 66 BP; 13 A; 17 C; 21 G; 0 T; 15 other;
gggcaaccgu ggcuuucgau uguuacugug ggaaccggag guaacagucu acagccaugg 60
ucgccc 66
//
ID mmu-mir-133a-1 standard; RNA; MMU; 68 BP.
XX
AC MI0000159;
XX
DE Mus musculus miR-133a-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676818; Mir133a-1.
DR ENTREZGENE; 387151; Mir133a-1.
XX
CC This mature miRNA sequence was named miR-133 in reference [1], and renamed
CC miR-133a on subsequent identification of a homologue differing at the
CC terminal 3' position (MIR:MI0000821). The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [3]. The 5' end of the miRNA may be offset with respect to previous
CC annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..27
FT /accession="MIMAT0003473"
FT /product="mmu-miR-133a-5p"
FT /evidence=experimental
FT /experiment="MPSS [2], Illumina [4-5]"
FT miRNA 43..64
FT /accession="MIMAT0000145"
FT /product="mmu-miR-133a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Illumina [4-5]"
XX
SQ Sequence 68 BP; 19 A; 18 C; 14 G; 0 T; 17 other;
gcuaaagcug guaaaaugga accaaaucgc cucuucaaug gauuuggucc ccuucaacca 60
gcuguagc 68
//
ID mmu-mir-134 standard; RNA; MMU; 71 BP.
XX
AC MI0000160;
XX
DE Mus musculus miR-134 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676819; Mir134.
DR ENTREZGENE; 387152; Mir134.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000146"
FT /product="mmu-miR-134-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], PCR [2], Illumina [5,7]"
FT miRNA 46..65
FT /accession="MIMAT0016985"
FT /product="mmu-miR-134-3p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
XX
SQ Sequence 71 BP; 12 A; 21 C; 22 G; 0 T; 16 other;
agggugugug acugguugac cagaggggcg ugcacucugu ucacccugug ggccaccuag 60
ucaccaaccc u 71
//
ID mmu-mir-135a-1 standard; RNA; MMU; 90 BP.
XX
AC MI0000161;
XX
DE Mus musculus miR-135a-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676820; Mirn135a-1.
DR ENTREZGENE; 387153; Mir135a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0000147"
FT /product="mmu-miR-135a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Illumina [4-5]"
FT miRNA 56..77
FT /accession="MIMAT0004531"
FT /product="mmu-miR-135a-1-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 90 BP; 16 A; 18 C; 24 G; 0 T; 32 other;
aggccucacu guucucuaug gcuuuuuauu ccuaugugau ucuauugcuc gcucauauag 60
ggauuggagc cguggcguac ggugaggaua 90
//
ID mmu-mir-136 standard; RNA; MMU; 62 BP.
XX
AC MI0000162;
XX
DE Mus musculus miR-136 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15854907.
RA Davis E, Caiment F, Tordoir X, Cavaille J, Ferguson-Smith A, Cockett N,
RA Georges M, Charlier C;
RT "RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11
RT locus";
RL Curr Biol. 15:743-749(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676821; Mir136.
DR ENTREZGENE; 387154; Mir136.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0000148"
FT /product="mmu-miR-136-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4], PCR [3], Illumina [5-6]"
FT miRNA 40..61
FT /accession="MIMAT0004532"
FT /product="mmu-miR-136-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 62 BP; 14 A; 13 C; 12 G; 0 T; 23 other;
gaggacucca uuuguuuuga ugauggauuc uuaagcucca ucaucgucuc aaaugagucu 60
uc 62
//
ID mmu-mir-137 standard; RNA; MMU; 73 BP.
XX
AC MI0000163;
XX
DE Mus musculus miR-137 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676822; Mir137.
DR ENTREZGENE; 387155; Mir137.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0016986"
FT /product="mmu-miR-137-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 45..67
FT /accession="MIMAT0000149"
FT /product="mmu-miR-137-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
XX
SQ Sequence 73 BP; 16 A; 10 C; 23 G; 0 T; 24 other;
cuucggugac ggguauucuu ggguggauaa uacggauuac guuguuauug cuuaagaaua 60
cgcguagucg agg 73
//
ID mmu-mir-140 standard; RNA; MMU; 70 BP.
XX
AC MI0000165;
XX
DE Mus musculus miR-140 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676825; Mir140.
DR ENTREZGENE; 387158; Mir140.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000151"
FT /product="mmu-miR-140-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
FT miRNA 45..65
FT /accession="MIMAT0000152"
FT /product="mmu-miR-140-3p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [5-6]"
XX
SQ Sequence 70 BP; 15 A; 18 C; 19 G; 0 T; 18 other;
ccugccagug guuuuacccu augguagguu acgucaugcu guucuaccac aggguagaac 60
cacggacagg 70
//
ID mmu-mir-144 standard; RNA; MMU; 66 BP.
XX
AC MI0000168;
XX
DE Mus musculus miR-144 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676829; Mir144.
DR ENTREZGENE; 387162; Mir144.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0016988"
FT /product="mmu-miR-144-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 43..62
FT /accession="MIMAT0000156"
FT /product="mmu-miR-144-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 66 BP; 20 A; 9 C; 16 G; 0 T; 21 other;
ggcugggaua ucaucauaua cuguaaguuu gugaugagac acuacaguau agaugaugua 60
cuaguc 66
//
ID mmu-mir-145a standard; RNA; MMU; 70 BP.
XX
AC MI0000169;
XX
DE Mus musculus miR-145 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676830; Mir145.
DR ENTREZGENE; 387163; Mir145.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0000157"
FT /product="mmu-miR-145a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 47..68
FT /accession="MIMAT0004534"
FT /product="mmu-miR-145a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 70 BP; 15 A; 16 C; 18 G; 0 T; 21 other;
cucacggucc aguuuuccca ggaaucccuu ggaugcuaag auggggauuc cuggaaauac 60
uguucuugag 70
//
ID mmu-mir-146a standard; RNA; MMU; 65 BP.
XX
AC MI0000170;
XX
DE Mus musculus miR-146a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676831; Mirn146.
DR ENTREZGENE; 387164; Mir146.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000158"
FT /product="mmu-miR-146a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 42..63
FT /accession="MIMAT0016989"
FT /product="mmu-miR-146a-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 65 BP; 18 A; 13 C; 13 G; 0 T; 21 other;
agcucugaga acugaauucc auggguuaua ucaaugucag accugugaaa uucaguucuu 60
cagcu 65
//
ID mmu-mir-149 standard; RNA; MMU; 66 BP.
XX
AC MI0000171;
XX
DE Mus musculus miR-149 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676834; Mir149.
DR ENTREZGENE; 387167; Mir149.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..26
FT /accession="MIMAT0000159"
FT /product="mmu-miR-149-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 44..65
FT /accession="MIMAT0016990"
FT /product="mmu-miR-149-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 66 BP; 6 A; 16 C; 29 G; 0 T; 15 other;
ggcucuggcu ccgugucuuc acucccgugu uuguccgagg agggagggag ggacgggggc 60
ggugcu 66
//
ID mmu-mir-150 standard; RNA; MMU; 65 BP.
XX
AC MI0000172;
XX
DE Mus musculus miR-150 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676835; Mir150.
DR ENTREZGENE; 387168; Mir150.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000160"
FT /product="mmu-miR-150-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 42..63
FT /accession="MIMAT0004535"
FT /product="mmu-miR-150-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 65 BP; 10 A; 22 C; 19 G; 0 T; 14 other;
cccugucucc caacccuugu accagugcug ugccucagac ccugguacag gccuggggga 60
uaggg 65
//
ID mmu-mir-151 standard; RNA; MMU; 68 BP.
XX
AC MI0000173;
XX
DE Mus musculus miR-151 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676836; Mir151.
DR ENTREZGENE; 387169; Mir151.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..28
FT /accession="MIMAT0004536"
FT /product="mmu-miR-151-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 43..63
FT /accession="MIMAT0000161"
FT /product="mmu-miR-151-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 68 BP; 13 A; 22 C; 17 G; 0 T; 16 other;
ccugcccucg aggagcucac agucuaguau gucuccuccc uacuagacug aggcuccuug 60
aggacagg 68
//
ID mmu-mir-152 standard; RNA; MMU; 73 BP.
XX
AC MI0000174;
XX
DE Mus musculus miR-152 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676837; Mir152.
DR ENTREZGENE; 387170; Mir152.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..31
FT /accession="MIMAT0016991"
FT /product="mmu-miR-152-5p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
FT miRNA 47..67
FT /accession="MIMAT0000162"
FT /product="mmu-miR-152-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5,7]"
XX
SQ Sequence 73 BP; 13 A; 21 C; 24 G; 0 T; 15 other;
ccgggccuag guucugugau acacuccgac ucgggcucug gagcagucag ugcaugacag 60
aacuugggcc cgg 73
//
ID mmu-mir-154 standard; RNA; MMU; 66 BP.
XX
AC MI0000176;
XX
DE Mus musculus miR-154 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676839; Mir154.
DR ENTREZGENE; 387172; Mir154.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000164"
FT /product="mmu-miR-154-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], PCR [2], Illumina [5-6]"
FT miRNA 42..63
FT /accession="MIMAT0004537"
FT /product="mmu-miR-154-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 66 BP; 14 A; 13 C; 14 G; 0 T; 25 other;
gaagauaggu uauccguguu gccuucgcuu uauucgugac gaaucauaca cgguugaccu 60
auuuuu 66
//
ID mmu-mir-155 standard; RNA; MMU; 65 BP.
XX
AC MI0000177;
XX
DE Mus musculus miR-155 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676840; Mir155.
DR ENTREZGENE; 387173; Mir155.
XX
CC Mouse mir-155 resides in the non-coding BIC transcript (EMBL:AY096003),
CC located on chromosome 16 [2]. The mature sequence shown here represents
CC the most commonly cloned form from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..26
FT /accession="MIMAT0000165"
FT /product="mmu-miR-155-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Illumina [5]"
FT miRNA 43..63
FT /accession="MIMAT0016993"
FT /product="mmu-miR-155-3p"
FT /evidence=experimental
FT /experiment="454 [4], Illumina [5]"
XX
SQ Sequence 65 BP; 14 A; 13 C; 15 G; 0 T; 23 other;
cuguuaaugc uaauugugau agggguuuug gccucugacu gacuccuacc uguuagcauu 60
aacag 65
//
ID mmu-mir-129-1 standard; RNA; MMU; 73 BP.
XX
AC MI0000222;
XX
DE Mus musculus miR-129-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676815; Mir129-1.
DR ENTREZGENE; 387237; Mir129-1.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0000209"
FT /product="mmu-miR-129-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], Illumina [5-6]"
FT miRNA 49..70
FT /accession="MIMAT0016994"
FT /product="mmu-miR-129-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
XX
SQ Sequence 73 BP; 15 A; 18 C; 17 G; 0 T; 23 other;
uggaucuuuu ugcggucugg gcuugcuguu cucucgacag uagucaggaa gcccuuaccc 60
caaaaaguau cua 73
//
ID mmu-mir-181a-2 standard; RNA; MMU; 76 BP.
XX
AC MI0000223;
XX
DE Mus musculus miR-181a-2 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676845; Mir181a-2.
DR ENTREZGENE; 387176; Mir181a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0000210"
FT /product="mmu-miR-181a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3,5], Illumina [6-7]"
FT miRNA 51..72
FT /accession="MIMAT0005443"
FT /product="mmu-miR-181a-2-3p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
XX
SQ Sequence 76 BP; 24 A; 18 C; 17 G; 0 T; 17 other;
ccauggaaca uucaacgcug ucggugaguu ugggauucaa aaacaaaaaa accaccgacc 60
guugacugua ccuugg 76
//
ID mmu-mir-182 standard; RNA; MMU; 75 BP.
XX
AC MI0000224;
XX
DE Mus musculus miR-182 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676846; Mir182.
DR ENTREZGENE; 387177; Mir182.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..31
FT /accession="MIMAT0000211"
FT /product="mmu-miR-182-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4,6]"
FT miRNA 50..70
FT /accession="MIMAT0016995"
FT /product="mmu-miR-182-3p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
XX
SQ Sequence 75 BP; 19 A; 16 C; 20 G; 0 T; 20 other;
accauuuuug gcaaugguag aacucacacc gguaagguaa ugggacccgg ugguucuaga 60
cuugccaacu auggu 75
//
ID mmu-mir-183 standard; RNA; MMU; 70 BP.
XX
AC MI0000225;
XX
DE Mus musculus miR-183 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676847; Mir183.
DR ENTREZGENE; 387178; Mir183.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000212"
FT /product="mmu-miR-183-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 45..66
FT /accession="MIMAT0004539"
FT /product="mmu-miR-183-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 70 BP; 21 A; 14 C; 18 G; 0 T; 17 other;
cuguguaugg cacugguaga auucacugug aacagucuca gucagugaau uaccgaaggg 60
ccauaaacag 70
//
ID mmu-mir-185 standard; RNA; MMU; 65 BP.
XX
AC MI0000227;
XX
DE Mus musculus miR-185 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676849; Mir185.
DR ENTREZGENE; 387180; Mir185.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000214"
FT /product="mmu-miR-185-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 41..61
FT /accession="MIMAT0016996"
FT /product="mmu-miR-185-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 65 BP; 10 A; 17 C; 21 G; 0 T; 17 other;
agggauugga gagaaaggca guuccugaug guccccuccc aggggcuggc uuuccucugg 60
uccuu 65
//
ID mmu-mir-186 standard; RNA; MMU; 71 BP.
XX
AC MI0000228;
XX
DE Mus musculus miR-186 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676850; Mir186.
DR ENTREZGENE; 387181; Mir186.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000215"
FT /product="mmu-miR-186-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 46..67
FT /accession="MIMAT0004540"
FT /product="mmu-miR-186-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 71 BP; 16 A; 12 C; 12 G; 0 T; 31 other;
acuuuccaaa gaauucuccu uuugggcuuu cucauuuuau uuuaagcccu aaggugaauu 60
uuuugggaag u 71
//
ID mmu-mir-187 standard; RNA; MMU; 61 BP.
XX
AC MI0000229;
XX
DE Mus musculus miR-187 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676851; Mir187.
DR ENTREZGENE; 387182; Mir187.
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..24
FT /accession="MIMAT0016997"
FT /product="mmu-miR-187-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 40..61
FT /accession="MIMAT0000216"
FT /product="mmu-miR-187-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 61 BP; 9 A; 21 C; 18 G; 0 T; 13 other;
ucaggcuaca acacaggacc cgggcgcugc ucugaccccu cgugucuugu guugcagccg 60
g 61
//
ID mmu-mir-188 standard; RNA; MMU; 68 BP.
XX
AC MI0000230;
XX
DE Mus musculus miR-188 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676852; Mir188.
DR ENTREZGENE; 387183; Mir188.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0000217"
FT /product="mmu-miR-188-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 45..65
FT /accession="MIMAT0004541"
FT /product="mmu-miR-188-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 68 BP; 14 A; 20 C; 18 G; 0 T; 16 other;
ucucacaucc cuugcauggu ggagggugag cucucugaaa accccuccca caugcagggu 60
uugcagga 68
//
ID mmu-mir-24-1 standard; RNA; MMU; 68 BP.
XX
AC MI0000231;
XX
DE Mus musculus miR-24-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [3]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [4]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [5]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [6]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [7]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [8]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [9]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676899; Mir24-1.
DR ENTREZGENE; 387142; Mir24-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0000218"
FT /product="mmu-miR-24-1-5p"
FT /evidence=experimental
FT /experiment="cloned [2,7], Illumina [8-9]"
FT miRNA 44..65
FT /accession="MIMAT0000219"
FT /product="mmu-miR-24-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3,5-7], Northern [3], Illumina [8]"
XX
SQ Sequence 68 BP; 16 A; 19 C; 16 G; 0 T; 17 other;
cuccggugcc uacugagcug auaucaguuc ucauuucaca cacuggcuca guucagcagg 60
aacaggag 68
//
ID mmu-mir-190a standard; RNA; MMU; 67 BP.
XX
AC MI0000232;
XX
DE Mus musculus miR-190 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676854; Mir190.
DR ENTREZGENE; 387185; Mir190.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000220"
FT /product="mmu-miR-190a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [4]"
FT miRNA 42..63
FT /accession="MIMAT0016998"
FT /product="mmu-miR-190a-3p"
FT /evidence=experimental
FT /experiment="454 [3], Illumina [4]"
XX
SQ Sequence 67 BP; 20 A; 9 C; 10 G; 0 T; 28 other;
cugugugaua uguuugauau auuagguugu uauuuaaucc aacuauauau caagcauauu 60
ccuacag 67
//
ID mmu-mir-191 standard; RNA; MMU; 74 BP.
XX
AC MI0000233;
XX
DE Mus musculus miR-191 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676855; Mir191.
DR ENTREZGENE; 387186; Mir191.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0000221"
FT /product="mmu-miR-191-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
FT miRNA 49..70
FT /accession="MIMAT0004542"
FT /product="mmu-miR-191-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 74 BP; 16 A; 22 C; 18 G; 0 T; 18 other;
agcgggcaac ggaaucccaa aagcagcugu ugucuccaga gcauuccagc ugcacuugga 60
uuucguuccc ugcu 74
//
ID hsa-mir-192 standard; RNA; HSA; 110 BP.
XX
AC MI0000234;
XX
DE Homo sapiens miR-192 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [3]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-192; hsa-miR-192.
DR HGNC; 31562; MIR192.
DR ENTREZGENE; 406967; MIR192.
XX
CC Lagos-Quintana et al. validated the presence of an 18 nt excised sequence
CC by cloning [1]. Lim et al. predicted the miR by computational methods
CC using conservation with mouse and Fugu rubripes sequences. Expression of
CC the excised miR was validated in zebrafish, and the 5' end mapped by PCR
CC [2]. The 3' ends of the reported sequences differ by 3 nt - this entry
CC contains the longer sequence. Lim et al. report three separate copies of
CC this gene named mir-192-1, -2 and -3 based on 2001 human genome assemblies
CC [2]. Subsequent assemblies suggest the presence of only one gene located
CC on chromosome 11.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0000222"
FT /product="hsa-miR-192-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT miRNA 67..88
FT /accession="MIMAT0004543"
FT /product="hsa-miR-192-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 110 BP; 22 A; 36 C; 27 G; 0 T; 25 other;
gccgagaccg agugcacagg gcucugaccu augaauugac agccagugcu cucgucuccc 60
cucuggcugc caauuccaua ggucacaggu auguucgccu caaugccagc 110
//
ID mmu-mir-193a standard; RNA; MMU; 66 BP.
XX
AC MI0000235;
XX
DE Mus musculus miR-193 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676857; Mir193.
DR ENTREZGENE; 387188; Mir193.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0004544"
FT /product="mmu-miR-193a-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT miRNA 41..62
FT /accession="MIMAT0000223"
FT /product="mmu-miR-193a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [2], Illumina [4-5]"
XX
SQ Sequence 66 BP; 15 A; 16 C; 20 G; 0 T; 15 other;
gagagcuggg ucuuugcggg caagaugaga gugucaguuc aacuggccua caaaguccca 60
guccuc 66
//
ID mmu-mir-194-1 standard; RNA; MMU; 67 BP.
XX
AC MI0000236;
XX
DE Mus musculus miR-194-1 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676858; Mir194-1.
DR ENTREZGENE; 387189; Mir194-1.
XX
CC Lagos-Quintana cloned miR-194 from mouse kidney tissue [1]. Michael et
CC al. subsequently verified expression of miR-194 in human [2]. Two
CC putative pairs of orthologous hairpin precursors structures are found in
CC mouse (mir-194-1 (MIR:MI0000236) on chromosome 1, and mir-194-2
CC (MIR:MI0000733) on chromosome 19) and human (mir-194-1 (MIR:MI0000488) on
CC chromosome 1, and mir-194-2 (MIR:MI0000732) on chromosome 11).
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000224"
FT /product="mmu-miR-194-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Illumina [4-5]"
FT miRNA 42..63
FT /accession="MIMAT0016999"
FT /product="mmu-miR-194-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 67 BP; 13 A; 15 C; 19 G; 0 T; 20 other;
aucgggugua acagcaacuc cauguggacu gugcucggau uccaguggag cugcuguuac 60
uucugau 67
//
ID mmu-mir-195a standard; RNA; MMU; 94 BP.
XX
AC MI0000237;
XX
DE Mus musculus miR-195 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676859; Mir195.
DR ENTREZGENE; 387190; Mir195.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0000225"
FT /product="mmu-miR-195a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4,6]"
FT miRNA 59..80
FT /accession="MIMAT0017000"
FT /product="mmu-miR-195a-3p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
XX
SQ Sequence 94 BP; 22 A; 23 C; 28 G; 0 T; 21 other;
acacccaacu cuccuggcuc uagcagcaca gaaauauugg cauggggaag ugagucugcc 60
aauauuggcu gugcugcucc aggcagggug guga 94
//
ID hsa-mir-196a-1 standard; RNA; HSA; 70 BP.
XX
AC MI0000238;
XX
DE Homo sapiens miR-196a-1 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [3]
RX PUBMED; 15105502.
RA Yekta S, Shih IH, Bartel DP;
RT "MicroRNA-directed cleavage of HOXB8 mRNA";
RL Science. 304:594-596(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-196a; hsa-miR-196a.
DR HGNC; 31567; MIR196A1.
DR ENTREZGENE; 406972; MIR196A1.
XX
CC Lagos-Quintana et al. [1] cloned this miRNA from human osteoblast sarcoma
CC cells. Lim et al [2] independently predicted this miRNA by computational
CC methods using conservation with mouse and Fugu rubripes sequences [2].
CC Expression of the excised miR was validated in zebrafish. The sequence
CC maps to human chromosome 17. Yekta et al. report that miR-196 miRNAs are
CC expressed from HOX gene clusters in mammals, and that HOX genes in these
CC clusters are targets of miR-196. Indeed, HOXB8 mRNA was shown to be a
CC natural target for miR-196-directed cleavage through a perfectly
CC complementary miR-target site. Other HOX genes have imperfect miR-196
CC complementary sites indicative of regulation by translational repression
CC [3]. The mature sequence shown here represents the most commonly cloned
CC form from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000226"
FT /product="hsa-miR-196a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,4-5]"
FT miRNA 45..65
FT /accession="MIMAT0037307"
FT /product="hsa-miR-196a-1-3p"
FT /evidence=not_experimental
XX
SQ Sequence 70 BP; 19 A; 15 C; 15 G; 0 T; 21 other;
gugaauuagg uaguuucaug uuguugggcc uggguuucug aacacaacaa cauuaaacca 60
cccgauucac 70
//
ID hsa-mir-197 standard; RNA; HSA; 75 BP.
XX
AC MI0000239;
XX
DE Homo sapiens miR-197 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-197; hsa-miR-197.
DR HGNC; 31569; MIR197.
DR ENTREZGENE; 406974; MIR197.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0022691"
FT /product="hsa-miR-197-5p"
FT /evidence=not_experimental
FT miRNA 48..69
FT /accession="MIMAT0000227"
FT /product="hsa-miR-197-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
XX
SQ Sequence 75 BP; 14 A; 24 C; 23 G; 0 T; 14 other;
ggcugugccg gguagagagg gcagugggag guaagagcuc uucacccuuc accaccuucu 60
ccacccagca uggcc 75
//
ID mmu-mir-199a-1 standard; RNA; MMU; 70 BP.
XX
AC MI0000241;
XX
DE Mus musculus miR-199a-1 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676863; Mir199a-1.
DR ENTREZGENE; 387194; Mir199a-1.
XX
CC The hairpin precursor sequence mir-199 maps to two loci within 50 kb on
CC mouse chromosome 9. This sequence was named mir-199 in [1] and [2], but
CC is renamed here to avoid overlap with the predicted homologues of human
CC mir-199a-2 and mir-199b. Landgraf et al. demonstrate comparable
CC expression for products from both arms of the hairpin, which are therefore
CC renamed miR-199a-5p and miR-199a-3p here [4]. The mature sequences shown
CC here represent the most commonly cloned forms from large-scale cloning
CC studies [4]. The 5' end of the miRNA may be offset with respect to
CC previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0000229"
FT /product="mmu-miR-199a-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Northern [2], Illumina [5-6]"
FT miRNA 46..67
FT /accession="MIMAT0000230"
FT /product="mmu-miR-199a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [2], Illumina [5-6]"
XX
SQ Sequence 70 BP; 15 A; 17 C; 20 G; 0 T; 18 other;
gccaucccag uguucagacu accuguucag gaggcuggga cauguacagu agucugcaca 60
uugguuaggc 70
//
ID hsa-mir-199a-1 standard; RNA; HSA; 71 BP.
XX
AC MI0000242;
XX
DE Homo sapiens miR-199a-1 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [3]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-199a; hsa-miR-199a.
DR TARGETS:PICTAR-VERT; hsa-miR-199a*; hsa-miR-199a*.
DR HGNC; 31571; MIR199A1.
DR ENTREZGENE; 406976; MIR199A1.
XX
CC Lagos-Quintana et al. [1] cloned miR-199 from human osteoblast sarcoma
CC cells. They also reported identification of a miRNA from the opposite arm
CC in mouse cells. This sequence was named miR-199-s and the sequence from
CC the 3' arm of the homologous mouse precursor miR-199-as. Lim et al. [2]
CC independently predicted this miRNA computationally using conservation with
CC mouse and Fugu rubripes sequences [2]. Expression of the miR excised from
CC the 5' arm was validated in zebrafish, and the ends mapped by cloning. The
CC excised miR sequences are renamed miR-199a (to avoid confusion with the
CC subsequently identified miR-199b (MIR:MI0000282)) and miR-199a* (from the
CC 3' arm) here. The two putative hairpin precursors in human map to
CC chromosome 19 (mir-199a-1, MIR:MI0000242) and chromosome 1 (mir-199a-2,
CC MIR:MI0000281). Landgraf et al. show that both mature products are
CC expressed, prompting the renaming to miR-199a-5p and miR-199a-3p [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0000231"
FT /product="hsa-miR-199a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4]"
FT miRNA 47..68
FT /accession="MIMAT0000232"
FT /product="hsa-miR-199a-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5]"
FT /similarity="MI0000713"
XX
SQ Sequence 71 BP; 16 A; 18 C; 18 G; 0 T; 19 other;
gccaacccag uguucagacu accuguucag gaggcucuca auguguacag uagucugcac 60
auugguuagg c 71
//
ID mmu-mir-200b standard; RNA; MMU; 70 BP.
XX
AC MI0000243;
XX
DE Mus musculus miR-200b stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676875; Mir200b.
DR ENTREZGENE; 387243; Mir200b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0004545"
FT /product="mmu-miR-200b-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 45..66
FT /accession="MIMAT0000233"
FT /product="mmu-miR-200b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 70 BP; 14 A; 16 C; 20 G; 0 T; 20 other;
gccguggcca ucuuacuggg cagcauugga uagugucuga ucucuaauac ugccugguaa 60
ugaugacggc 70
//
ID mmu-mir-201 standard; RNA; MMU; 66 BP.
XX
AC MI0000244;
XX
DE Mus musculus miR-201 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676876; Mir201.
DR ENTREZGENE; 387197; Mir201.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000234"
FT /product="mmu-miR-201-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 41..63
FT /accession="MIMAT0017001"
FT /product="mmu-miR-201-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 66 BP; 18 A; 11 C; 12 G; 0 T; 25 other;
uaccuuacuc aguaaggcau uguucuucua uauuaauaaa ugaacagugc cuuucugugu 60
agggua 66
//
ID mmu-mir-202 standard; RNA; MMU; 72 BP.
XX
AC MI0000245;
XX
DE Mus musculus miR-202 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676877; Mir202.
DR ENTREZGENE; 387198; Mir202.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0004546"
FT /product="mmu-miR-202-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT miRNA 45..66
FT /accession="MIMAT0000235"
FT /product="mmu-miR-202-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
XX
SQ Sequence 72 BP; 16 A; 12 C; 19 G; 0 T; 25 other;
guuccuuuuu ccuaugcaua uacuucuuug uggaucuggu cuaaagaggu auagcgcaug 60
ggaagaugga gc 72
//
ID mmu-mir-204 standard; RNA; MMU; 68 BP.
XX
AC MI0000247;
XX
DE Mus musculus miR-204 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676879; Mir204.
DR ENTREZGENE; 387200; Mir204.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000237"
FT /product="mmu-miR-204-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 45..65
FT /accession="MIMAT0017002"
FT /product="mmu-miR-204-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 68 BP; 18 A; 13 C; 20 G; 0 T; 17 other;
uggacuuccc uuugucaucc uaugccugag aauauaugaa ggaggcuggg aaggcaaagg 60
gacguuca 68
//
ID mmu-mir-205 standard; RNA; MMU; 68 BP.
XX
AC MI0000248;
XX
DE Mus musculus miR-205 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676880; Mir205.
DR ENTREZGENE; 387201; Mir205.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000238"
FT /product="mmu-miR-205-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 43..64
FT /accession="MIMAT0017003"
FT /product="mmu-miR-205-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 68 BP; 14 A; 18 C; 16 G; 0 T; 20 other;
cucuuguccu ucauuccacc ggagucuguc uuaugccaac cagauuucag uggagugaag 60
cucaggag 68
//
ID hsa-mir-208a standard; RNA; HSA; 71 BP.
XX
AC MI0000251;
XX
DE Homo sapiens miR-208a stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-208; hsa-miR-208.
DR HGNC; 31585; MIR208A.
DR ENTREZGENE; 406990; MIR208A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0026474"
FT /product="hsa-miR-208a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 44..65
FT /accession="MIMAT0000241"
FT /product="hsa-miR-208a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000555"
XX
SQ Sequence 71 BP; 17 A; 15 C; 21 G; 0 T; 18 other;
ugacgggcga gcuuuuggcc cggguuauac cugaugcuca cguauaagac gagcaaaaag 60
cuuguugguc a 71
//
ID hsa-mir-129-1 standard; RNA; HSA; 72 BP.
XX
AC MI0000252;
XX
DE Homo sapiens miR-129-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-129; hsa-miR-129.
DR HGNC; 31512; MIR129-1.
DR ENTREZGENE; 406917; MIR129-1.
XX
CC This miRNA sequence was predicted based on homology to a verified miRNA
CC cloned from mouse cerebellum [1]. Expression of this miRNA was
CC subsequently verified in a human osteoblast sarcoma cell line [2].
CC Reference [2] named the human/mouse conserved sequence miR-129b, but
CC subsequent genome searches suggest that the same mature sequence may be
CC expressed from two predicted hairpin precursors in both human (this entry
CC and MIR:MI0000473) and mouse (MIR:MI0000222 and MIR:MI0000585). Landgraf
CC et al. show that the 5' product of mir-129-1 (this entry) is the
CC predominant one, whereas both 5' and 3' products are significantly
CC expressed from mir-129-2 (MIR:MI0000585) [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..25
FT /accession="MIMAT0000242"
FT /product="hsa-miR-129-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT miRNA 49..70
FT /accession="MIMAT0004548"
FT /product="hsa-miR-129-1-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 72 BP; 15 A; 19 C; 16 G; 0 T; 22 other;
ggaucuuuuu gcggucuggg cuugcuguuc cucucaacag uagucaggaa gcccuuaccc 60
caaaaaguau cu 72
//
ID hsa-mir-148a standard; RNA; HSA; 68 BP.
XX
AC MI0000253;
XX
DE Homo sapiens miR-148a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-148a; hsa-miR-148a.
DR HGNC; 31535; MIR148A.
DR ENTREZGENE; 406940; MIR148A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0004549"
FT /product="hsa-miR-148a-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 44..65
FT /accession="MIMAT0000243"
FT /product="hsa-miR-148a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [2]"
XX
SQ Sequence 68 BP; 20 A; 15 C; 16 G; 0 T; 17 other;
gaggcaaagu ucugagacac uccgacucug aguaugauag aagucagugc acuacagaac 60
uuugucuc 68
//
ID hsa-mir-30c-2 standard; RNA; HSA; 72 BP.
XX
AC MI0000254;
XX
DE Homo sapiens miR-30c-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-30c; hsa-miR-30c.
DR HGNC; 31627; MIR30C2.
DR ENTREZGENE; 407032; MIR30C2.
XX
CC miR-30c was cloned from mouse heart and brain tissues by Lagos-Quintana et
CC al. [1]. Two human hairpin precursor sequences are predicted based on
CC homology with the mouse sequences, on chromosomes 1 (MIR:MI0000736) and 6
CC (MIR:MI0000254) [3]. Expression of miR-30c was later independently
CC verified in human HL-60 leukemia cells [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0000244"
FT /product="hsa-miR-30c-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4-6]"
FT /similarity="MI0000548"
FT miRNA 47..68
FT /accession="MIMAT0004550"
FT /product="hsa-miR-30c-2-3p"
FT /evidence=experimental
FT /experiment="cloned [5]"
XX
SQ Sequence 72 BP; 22 A; 14 C; 16 G; 0 T; 20 other;
agauacugua aacauccuac acucucagcu guggaaagua agaaagcugg gagaaggcug 60
uuuacucuuu cu 72
//
ID hsa-mir-30d standard; RNA; HSA; 70 BP.
XX
AC MI0000255;
XX
DE Homo sapiens miR-30d stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [4]
RX PUBMED; 17989717.
RA Marton S, Garcia MR, Robello C, Persson H, Trajtenberg F, Pritsch O,
RA Rovira C, Naya H, Dighiero G, Cayota A;
RT "Small RNAs analysis in CLL reveals a deregulation of miRNA expression and
RT novel miRNA candidates of putative relevance in CLL pathogenesis";
RL Leukemia. 22:330-338(2008).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-30d; hsa-miR-30d.
DR HGNC; 31628; MIR30D.
DR ENTREZGENE; 407033; MIR30D.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000245"
FT /product="hsa-miR-30d-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
FT /similarity="MI0000549"
FT miRNA 46..67
FT /accession="MIMAT0004551"
FT /product="hsa-miR-30d-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 70 BP; 18 A; 16 C; 16 G; 0 T; 20 other;
guuguuguaa acauccccga cuggaagcug uaagacacag cuaagcuuuc agucagaugu 60
uugcugcuac 70
//
ID mmu-mir-122 standard; RNA; MMU; 66 BP.
XX
AC MI0000256;
XX
DE Mus musculus miR-122 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676805; Mirn122a.
DR ENTREZGENE; 387231; Mir122a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000246"
FT /product="mmu-miR-122-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 41..62
FT /accession="MIMAT0017005"
FT /product="mmu-miR-122-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 66 BP; 20 A; 14 C; 14 G; 0 T; 18 other;
agcuguggag ugugacaaug guguuugugu ccaaaccauc aaacgccauu aucacacuaa 60
auagcu 66
//
ID mmu-mir-143 standard; RNA; MMU; 63 BP.
XX
AC MI0000257;
XX
DE Mus musculus miR-143 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676828; Mir143.
DR ENTREZGENE; 387161; Mir143.
XX
CC Expression of this miRNA in mouse was independently verified in heart and
CC brain [1], embryonic stem cells [2] and testes [3]. The predominant miRNA
CC cloned by Langraf et al. has a 3' terminal U residue, which is
CC incompatible with the genome sequence [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0017006"
FT /product="mmu-miR-143-5p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
FT miRNA 40..60
FT /accession="MIMAT0000247"
FT /product="mmu-miR-143-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5,7]"
XX
SQ Sequence 63 BP; 12 A; 13 C; 22 G; 0 T; 16 other;
ccugaggugc agugcugcau cucuggucag uugggagucu gagaugaagc acuguagcuc 60
agg 63
//
ID mmu-mir-30e standard; RNA; MMU; 92 BP.
XX
AC MI0000259;
XX
DE Mus musculus miR-30e stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619329; Mir30e.
DR ENTREZGENE; 723836; Mir30e.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [5].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000248"
FT /product="mmu-miR-30e-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4-5], Illumina [6-7]"
FT miRNA 59..80
FT /accession="MIMAT0000249"
FT /product="mmu-miR-30e-3p"
FT /evidence=experimental
FT /experiment="cloned [3,5], Illumina [6-7]"
XX
SQ Sequence 92 BP; 20 A; 18 C; 29 G; 0 T; 25 other;
gggcagucuu ugcuacugua aacauccuug acuggaagcu guaagguguu gagaggagcu 60
uucagucgga uguuuacagc ggcaggcugc ca 92
//
ID hsa-mir-139 standard; RNA; HSA; 68 BP.
XX
AC MI0000261;
XX
DE Homo sapiens miR-139 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-139; hsa-miR-139.
DR HGNC; 31526; MIR139.
DR ENTREZGENE; 406931; MIR139.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0000250"
FT /product="hsa-miR-139-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000693"
FT miRNA 43..65
FT /accession="MIMAT0004552"
FT /product="hsa-miR-139-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 68 BP; 11 A; 16 C; 24 G; 0 T; 17 other;
guguauucua cagugcacgu gucuccagug uggcucggag gcuggagacg cggcccuguu 60
ggaguaac 68
//
ID hsa-mir-7-1 standard; RNA; HSA; 110 BP.
XX
AC MI0000263;
XX
DE Homo sapiens miR-7-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR RFAM; RF00053; mir-7.
DR TARGETS:PICTAR-VERT; hsa-miR-7; hsa-miR-7.
DR HGNC; 31638; MIR7-1.
DR ENTREZGENE; 407043; MIR7-1.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the 5' end mapped by PCR. Landgraf
CC et al. confirm expression in human [2]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..47
FT /accession="MIMAT0000252"
FT /product="hsa-miR-7-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0001360"
FT miRNA 66..87
FT /accession="MIMAT0004553"
FT /product="hsa-miR-7-1-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 110 BP; 29 A; 21 C; 25 G; 0 T; 35 other;
uuggauguug gccuaguucu guguggaaga cuagugauuu uguuguuuuu agauaacuaa 60
aucgacaaca aaucacaguc ugccauaugg cacaggccau gccucuacag 110
//
ID hsa-mir-7-2 standard; RNA; HSA; 110 BP.
XX
AC MI0000264;
XX
DE Homo sapiens miR-7-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR RFAM; RF00053; mir-7.
DR TARGETS:PICTAR-VERT; hsa-miR-7; hsa-miR-7.
DR HGNC; 31639; MIR7-2.
DR ENTREZGENE; 407044; MIR7-2.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the 5' end mapped by PCR. Landgraf
CC et al. confirm expression in human [2]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 32..55
FT /accession="MIMAT0000252"
FT /product="hsa-miR-7-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0001361"
FT miRNA 72..93
FT /accession="MIMAT0004554"
FT /product="hsa-miR-7-2-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 110 BP; 26 A; 30 C; 26 G; 0 T; 28 other;
cuggauacag aguggaccgg cuggccccau cuggaagacu agugauuuug uuguugucuu 60
acugcgcuca acaacaaauc ccagucuacc uaauggugcc agccaucgca 110
//
ID hsa-mir-10a standard; RNA; HSA; 110 BP.
XX
AC MI0000266;
XX
DE Homo sapiens miR-10a stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR RFAM; RF00104; mir-10.
DR TARGETS:PICTAR-VERT; hsa-miR-10a; hsa-miR-10a.
DR HGNC; 31497; MIR10A.
DR ENTREZGENE; 406902; MIR10A.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. Mature
CC products were later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0000253"
FT /product="hsa-miR-10a-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0001363"
FT miRNA 63..84
FT /accession="MIMAT0004555"
FT /product="hsa-miR-10a-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 110 BP; 28 A; 20 C; 23 G; 0 T; 39 other;
gaucugucug ucuucuguau auacccugua gauccgaauu uguguaagga auuuuguggu 60
cacaaauucg uaucuagggg aauauguagu ugacauaaac acuccgcucu 110
//
ID hsa-mir-34a standard; RNA; HSA; 110 BP.
XX
AC MI0000268;
XX
DE Homo sapiens miR-34a stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
RC Erratum RNA 9:631-632(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-34a; hsa-miR-34a.
DR HGNC; 31635; MIR34A.
DR ENTREZGENE; 407040; MIR34A.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. Dostie
CC et al. independently cloned this sequence in human but misnamed the
CC sequence miR-172 (the sequence is unrelated to MIR172 from Arabidopsis)
CC [2]. The sequence maps to human chromosome 1. Human miR-34a was
CC previously named miR-34 here and in [1], but is renamed to clarify
CC homology with the alternatively named mouse sequence (MIR:MI0000584). The
CC mature sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0000255"
FT /product="hsa-miR-34a-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
FT miRNA 64..85
FT /accession="MIMAT0004557"
FT /product="hsa-miR-34a-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 110 BP; 23 A; 21 C; 35 G; 0 T; 31 other;
ggccagcugu gaguguuucu uuggcagugu cuuagcuggu uguugugagc aauaguaagg 60
aagcaaucag caaguauacu gcccuagaag ugcugcacgu uguggggccc 110
//
ID hsa-mir-181a-2 standard; RNA; HSA; 110 BP.
XX
AC MI0000269;
XX
DE Homo sapiens miR-181a-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [6]
RX PUBMED; 17989717.
RA Marton S, Garcia MR, Robello C, Persson H, Trajtenberg F, Pritsch O,
RA Rovira C, Naya H, Dighiero G, Cayota A;
RT "Small RNAs analysis in CLL reveals a deregulation of miRNA expression and
RT novel miRNA candidates of putative relevance in CLL pathogenesis";
RL Leukemia. 22:330-338(2008).
XX
DR RFAM; RF00076; mir-181.
DR TARGETS:PICTAR-VERT; hsa-mir-181a-2; hsa-mir-181a-2.
DR HGNC; 31549; MIR181A2.
DR ENTREZGENE; 406954; MIR181A2.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. Landgraf
CC et al. and Lui et al. later verify expression in human [4-5].
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..61
FT /accession="MIMAT0000256"
FT /product="hsa-miR-181a-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4-6]"
FT miRNA 77..98
FT /accession="MIMAT0004558"
FT /product="hsa-miR-181a-2-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 110 BP; 29 A; 25 C; 30 G; 0 T; 26 other;
agaagggcua ucaggccagc cuucagagga cuccaaggaa cauucaacgc ugucggugag 60
uuugggauuu gaaaaaacca cugaccguug acuguaccuu gggguccuua 110
//
ID hsa-mir-181b-1 standard; RNA; HSA; 110 BP.
XX
AC MI0000270;
XX
DE Homo sapiens miR-181b-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR RFAM; RF00076; mir-181.
DR TARGETS:PICTAR-VERT; hsa-miR-181b; hsa-miR-181b.
DR HGNC; 31550; MIR181B1.
DR ENTREZGENE; 406955; MIR181B1.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. Its
CC expression was later verified in human BC-1 cells [3]. There are two
CC predicted hairpin precursor sequences in the human genome; mir-181b-1
CC (MIR:MI0000270) is found on chromosome 1 [1], and mir-181b-2
CC (MIR:MI0000683) on chromosome 9 [2]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 36..58
FT /accession="MIMAT0000257"
FT /product="hsa-miR-181b-5p"
FT /evidence=experimental
FT /experiment="cloned [3-5]"
FT /similarity="MI0001366"
FT miRNA 76..96
FT /accession="MIMAT0022692"
FT /product="hsa-miR-181b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 110 BP; 29 A; 23 C; 26 G; 0 T; 32 other;
ccugugcaga gauuauuuuu uaaaagguca caaucaacau ucauugcugu cgguggguug 60
aacugugugg acaagcucac ugaacaauga augcaacugu ggccccgcuu 110
//
ID hsa-mir-181c standard; RNA; HSA; 110 BP.
XX
AC MI0000271;
XX
DE Homo sapiens miR-181c stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR RFAM; RF00076; mir-181.
DR TARGETS:PICTAR-VERT; hsa-miR-181c; hsa-miR-181c.
DR HGNC; 31552; MIR181C.
DR ENTREZGENE; 406957; MIR181C.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. Landgraf
CC et al. confirm the expression of miR-181c in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..48
FT /accession="MIMAT0000258"
FT /product="hsa-miR-181c-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0001380"
FT miRNA 65..86
FT /accession="MIMAT0004559"
FT /product="hsa-miR-181c-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 110 BP; 25 A; 26 C; 34 G; 0 T; 25 other;
cggaaaauuu gccaaggguu ugggggaaca uucaaccugu cggugaguuu gggcagcuca 60
ggcaaaccau cgaccguuga guggacccug aggccuggaa uugccauccu 110
//
ID hsa-mir-182 standard; RNA; HSA; 110 BP.
XX
AC MI0000272;
XX
DE Homo sapiens miR-182 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-182; hsa-miR-182.
DR TARGETS:PICTAR-VERT; hsa-miR-182*; hsa-miR-182*.
DR HGNC; 31553; MIR182.
DR ENTREZGENE; 406958; MIR182.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..46
FT /accession="MIMAT0000259"
FT /product="hsa-miR-182-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0001368"
FT miRNA 67..87
FT /accession="MIMAT0000260"
FT /product="hsa-miR-182-3p"
FT /evidence=not_experimental
FT /similarity="MI0001368"
XX
SQ Sequence 110 BP; 22 A; 30 C; 33 G; 0 T; 25 other;
gagcugcuug ccuccccccg uuuuuggcaa ugguagaacu cacacuggug agguaacagg 60
auccgguggu ucuagacuug ccaacuaugg ggcgaggacu cagccggcac 110
//
ID hsa-mir-183 standard; RNA; HSA; 110 BP.
XX
AC MI0000273;
XX
DE Homo sapiens miR-183 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-183; hsa-miR-183.
DR HGNC; 31554; MIR183.
DR ENTREZGENE; 406959; MIR183.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the 5' end mapped by PCR. Expression
CC was later confirmed in human [2,3]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..48
FT /accession="MIMAT0000261"
FT /product="hsa-miR-183-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
FT miRNA 66..87
FT /accession="MIMAT0004560"
FT /product="hsa-miR-183-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 110 BP; 32 A; 25 C; 29 G; 0 T; 24 other;
ccgcagagug ugacuccugu ucuguguaug gcacugguag aauucacugu gaacagucuc 60
agucagugaa uuaccgaagg gccauaaaca gagcagagac agauccacga 110
//
ID hsa-mir-187 standard; RNA; HSA; 109 BP.
XX
AC MI0000274;
XX
DE Homo sapiens miR-187 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-187; hsa-miR-187.
DR HGNC; 31558; MIR187.
DR ENTREZGENE; 406963; MIR187.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the 5' end mapped by PCR. Landgraf
CC et al. confirm expression in human [2]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 35..56
FT /accession="MIMAT0004561"
FT /product="hsa-miR-187-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 71..92
FT /accession="MIMAT0000262"
FT /product="hsa-miR-187-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0001370"
XX
SQ Sequence 109 BP; 19 A; 35 C; 36 G; 0 T; 19 other;
ggucgggcuc accaugacac agugugagac cucgggcuac aacacaggac ccgggcgcug 60
cucugacccc ucgugucuug uguugcagcc ggagggacgc agguccgca 109
//
ID hsa-mir-196a-2 standard; RNA; HSA; 110 BP.
XX
AC MI0000279;
XX
DE Homo sapiens miR-196a-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15105502.
RA Yekta S, Shih IH, Bartel DP;
RT "MicroRNA-directed cleavage of HOXB8 mRNA";
RL Science. 304:594-596(2004).
XX
RN [3]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-196a; hsa-miR-196a.
DR HGNC; 31568; MIR196A2.
DR ENTREZGENE; 406973; MIR196A2.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. miR-196a
CC was later validated in human [3,4]. Yekta et al. report that miR-196
CC miRNAs are expressed from HOX gene clusters in mammals, and that HOX genes
CC in these clusters are targets of miR-196. Indeed, HOXB8 mRNA was shown to
CC be a natural target for miR-196-directed cleavage through a perfectly
CC complementary miR-target site. Other HOX genes have imperfect miR-196
CC complementary sites indicative of regulation by translational repression
CC [2]. The mature sequence shown here represents the most commonly cloned
CC form from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0000226"
FT /product="hsa-miR-196a-5p"
FT /evidence=experimental
FT /experiment="cloned [3-5]"
FT miRNA 62..83
FT /accession="MIMAT0004562"
FT /product="hsa-miR-196a-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 110 BP; 21 A; 21 C; 32 G; 0 T; 36 other;
ugcucgcuca gcugaucugu ggcuuaggua guuucauguu guugggauug aguuuugaac 60
ucggcaacaa gaaacugccu gaguuacauc agucgguuuu cgucgagggc 110
//
ID hsa-mir-199a-2 standard; RNA; HSA; 110 BP.
XX
AC MI0000281;
XX
DE Homo sapiens miR-199a-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [3]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-199a; hsa-miR-199a.
DR TARGETS:PICTAR-VERT; hsa-miR-199a*; hsa-miR-199a*.
DR HGNC; 31572; MIR199A2.
DR ENTREZGENE; 406977; MIR199A2.
XX
CC Lagos-Quintana et al. [1] cloned miR-199 from human osteoblast sarcoma
CC cells. They also reported identification of a miRNA from the opposite arm
CC in mouse cells. This sequence was named miR-199-s and the sequence from
CC the 3' arm of the homologous mouse precursor miR-199-as. Lim et al. [2]
CC independently predicted this miRNA computationally using conservation with
CC mouse and Fugu rubripes sequences [2]. Expression of the miR excised from
CC the 5' arm was validated in zebrafish, and the ends mapped by cloning. The
CC excised miR sequences are renamed miR-199a (to avoid confusion with the
CC subsequently identified miR-199b (MIR:MI0000282)) and miR-199a* (from the
CC 3' arm) here. The two putative hairpin precursors in human map to
CC chromosome 19 (mir-199a-1, MIR:MI0000242) and chromosome 1 (mir-199a-2,
CC MIR:MI0000281). Landgraf et al. show that both mature products are
CC expressed, prompting the renaming to miR-199a-5p and miR-199a-3p [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..53
FT /accession="MIMAT0000231"
FT /product="hsa-miR-199a-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
FT miRNA 70..91
FT /accession="MIMAT0000232"
FT /product="hsa-miR-199a-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5]"
FT /similarity="MI0000713"
XX
SQ Sequence 110 BP; 25 A; 27 C; 32 G; 0 T; 26 other;
aggaagcuuc uggagauccu gcuccgucgc cccaguguuc agacuaccug uucaggacaa 60
ugccguugua caguagucug cacauugguu agacugggca agggagagca 110
//
ID hsa-mir-199b standard; RNA; HSA; 110 BP.
XX
AC MI0000282;
XX
DE Homo sapiens miR-199b stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-199b; hsa-miR-199b.
DR HGNC; 31573; MIR199B.
DR ENTREZGENE; 406978; MIR199B.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised 5'
CC miR has been validated in zebrafish, the ends mapped by cloning [2], and
CC later verified in human [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..48
FT /accession="MIMAT0000263"
FT /product="hsa-miR-199b-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT miRNA 65..86
FT /accession="MIMAT0004563"
FT /product="hsa-miR-199b-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 110 BP; 23 A; 31 C; 27 G; 0 T; 29 other;
ccagaggaca ccuccacucc gucuacccag uguuuagacu aucuguucag gacucccaaa 60
uuguacagua gucugcacau ugguuaggcu gggcuggguu agacccucgg 110
//
ID hsa-mir-203a standard; RNA; HSA; 110 BP.
XX
AC MI0000283;
XX
DE Homo sapiens miR-203a stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17622355.
RA Sonkoly E, Wei T, Janson PC, Saaf A, Lundeberg L, Tengvall-Linder M,
RA Norstedt G, Alenius H, Homey B, Scheynius A, Stahle M, Pivarcsi A;
RT "MicroRNAs: novel regulators involved in the pathogenesis of psoriasis?";
RL PLoS One. 2:e610(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-203; hsa-miR-203.
DR HGNC; 31581; MIR203.
DR ENTREZGENE; 406986; MIR203.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. Landgraf
CC et al. confirm expression in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..51
FT /accession="MIMAT0031890"
FT /product="hsa-miR-203a-5p"
FT /evidence=not_experimental
FT miRNA 65..86
FT /accession="MIMAT0000264"
FT /product="hsa-miR-203a-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0001376"
XX
SQ Sequence 110 BP; 22 A; 26 C; 37 G; 0 T; 25 other;
guguugggga cucgcgcgcu ggguccagug guucuuaaca guucaacagu ucuguagcgc 60
aauugugaaa uguuuaggac cacuagaccc ggcgggcgcg gcgacagcga 110
//
ID hsa-mir-204 standard; RNA; HSA; 110 BP.
XX
AC MI0000284;
XX
DE Homo sapiens miR-204 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-204; hsa-miR-204.
DR HGNC; 31582; MIR204.
DR ENTREZGENE; 406987; MIR204.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. Landgraf
CC et al. confirm expression in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 33..54
FT /accession="MIMAT0000265"
FT /product="hsa-miR-204-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0001377"
FT miRNA 72..92
FT /accession="MIMAT0022693"
FT /product="hsa-miR-204-3p"
FT /evidence=not_experimental
XX
SQ Sequence 110 BP; 25 A; 24 C; 29 G; 0 T; 32 other;
ggcuacaguc uuucuucaug ugacucgugg acuucccuuu gucauccuau gccugagaau 60
auaugaagga ggcugggaag gcaaagggac guucaauugu caucacuggc 110
//
ID hsa-mir-205 standard; RNA; HSA; 110 BP.
XX
AC MI0000285;
XX
DE Homo sapiens miR-205 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [4]
RX PUBMED; 19144710.
RA Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G;
RT "Identification of novel Epstein-Barr virus microRNA genes from
RT nasopharyngeal carcinomas";
RL J Virol. 83:3333-3341(2009).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-205; hsa-miR-205.
DR HGNC; 31583; MIR205.
DR ENTREZGENE; 406988; MIR205.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. Landgraf
CC et al. confirm expression in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 34..55
FT /accession="MIMAT0000266"
FT /product="hsa-miR-205-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0001378"
FT miRNA 71..91
FT /accession="MIMAT0009197"
FT /product="hsa-miR-205-3p"
FT /evidence=experimental
FT /experiment="454 [4]"
XX
SQ Sequence 110 BP; 28 A; 29 C; 24 G; 0 T; 29 other;
aaagauccuc agacaaucca ugugcuucuc uuguccuuca uuccaccgga gucugucuca 60
uacccaacca gauuucagug gagugaaguu caggaggcau ggagcugaca 110
//
ID hsa-mir-210 standard; RNA; HSA; 110 BP.
XX
AC MI0000286;
XX
DE Homo sapiens miR-210 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [5]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-210; hsa-miR-210.
DR HGNC; 31587; MIR210.
DR ENTREZGENE; 406992; MIR210.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. Its
CC expression was later verified in human BC-1 cells [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..49
FT /accession="MIMAT0026475"
FT /product="hsa-miR-210-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 66..87
FT /accession="MIMAT0000267"
FT /product="hsa-miR-210-3p"
FT /evidence=experimental
FT /experiment="cloned [2-4], Illumina [5]"
FT /similarity="MI0001379"
XX
SQ Sequence 110 BP; 16 A; 46 C; 34 G; 0 T; 14 other;
acccggcagu gccuccaggc gcagggcagc cccugcccac cgcacacugc gcugccccag 60
acccacugug cgugugacag cggcugaucu gugccugggc agcgcgaccc 110
//
ID hsa-mir-211 standard; RNA; HSA; 110 BP.
XX
AC MI0000287;
XX
DE Homo sapiens miR-211 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-211; hsa-miR-211.
DR HGNC; 31588; MIR211.
DR ENTREZGENE; 406993; MIR211.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. The
CC sequence maps to human chromosome 15.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..47
FT /accession="MIMAT0000268"
FT /product="hsa-miR-211-5p"
FT /evidence=not_experimental
FT /similarity="MI0001377"
FT miRNA 63..83
FT /accession="MIMAT0022694"
FT /product="hsa-miR-211-3p"
FT /evidence=not_experimental
XX
SQ Sequence 110 BP; 19 A; 32 C; 33 G; 0 T; 26 other;
ucaccuggcc augugacuug ugggcuuccc uuugucaucc uucgccuagg gcucugagca 60
gggcagggac agcaaagggg ugcucaguug ucacuuccca cagcacggag 110
//
ID hsa-mir-212 standard; RNA; HSA; 110 BP.
XX
AC MI0000288;
XX
DE Homo sapiens miR-212 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-212; hsa-miR-212.
DR HGNC; 31589; MIR212.
DR ENTREZGENE; 406994; MIR212.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the 5' end mapped by PCR. The 3' end
CC was not experimentally determined. The sequence maps to human chromosome
CC 17, but its expression has not been experimentally verified in human.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..53
FT /accession="MIMAT0022695"
FT /product="hsa-miR-212-5p"
FT /evidence=not_experimental
FT miRNA 71..91
FT /accession="MIMAT0000269"
FT /product="hsa-miR-212-3p"
FT /evidence=not_experimental
FT /similarity="MI0003385"
XX
SQ Sequence 110 BP; 15 A; 50 C; 31 G; 0 T; 14 other;
cggggcaccc cgcccggaca gcgcgccggc accuuggcuc uagacugcuu acugcccggg 60
ccgcccucag uaacagucuc cagucacggc caccgacgcc uggccccgcc 110
//
ID hsa-mir-181a-1 standard; RNA; HSA; 110 BP.
XX
AC MI0000289;
XX
DE Homo sapiens miR-181a-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [6]
RX PUBMED; 17989717.
RA Marton S, Garcia MR, Robello C, Persson H, Trajtenberg F, Pritsch O,
RA Rovira C, Naya H, Dighiero G, Cayota A;
RT "Small RNAs analysis in CLL reveals a deregulation of miRNA expression and
RT novel miRNA candidates of putative relevance in CLL pathogenesis";
RL Leukemia. 22:330-338(2008).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-181a; hsa-miR-181a.
DR HGNC; 31590; MIR181A1.
DR ENTREZGENE; 406995; MIR181A1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0000256"
FT /product="hsa-miR-181a-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4-6]"
FT miRNA 64..85
FT /accession="MIMAT0000270"
FT /product="hsa-miR-181a-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
FT /similarity="MI0001380"
XX
SQ Sequence 110 BP; 30 A; 24 C; 22 G; 0 T; 34 other;
ugaguuuuga gguugcuuca gugaacauuc aacgcugucg gugaguuugg aauuaaaauc 60
aaaaccaucg accguugauu guacccuaug gcuaaccauc aucuacucca 110
//
ID hsa-mir-214 standard; RNA; HSA; 110 BP.
XX
AC MI0000290;
XX
DE Homo sapiens miR-214 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 18230126.
RA Afanasyeva EA, Hotz-Wagenblatt A, Glatting KH, Westermann F;
RT "New miRNAs cloned from neuroblastoma";
RL BMC Genomics. 9:52(2008).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-214; hsa-miR-214.
DR HGNC; 31591; MIR214.
DR ENTREZGENE; 406996; MIR214.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. Landgraf
CC et al. confirm expression in human [2]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..51
FT /accession="MIMAT0004564"
FT /product="hsa-miR-214-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Northern [3]"
FT miRNA 71..92
FT /accession="MIMAT0000271"
FT /product="hsa-miR-214-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0001381"
XX
SQ Sequence 110 BP; 25 A; 34 C; 28 G; 0 T; 23 other;
ggccuggcug gacagaguug ucaugugucu gccugucuac acuugcugug cagaacaucc 60
gcucaccugu acagcaggca cagacaggca gucacaugac aacccagccu 110
//
ID hsa-mir-216a standard; RNA; HSA; 110 BP.
XX
AC MI0000292;
XX
DE Homo sapiens miR-216a stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 22282338.
RA Voellenkle C, Rooij Jv, Guffanti A, Brini E, Fasanaro P, Isaia E, Croft L,
RA David M, Capogrossi MC, Moles A, Felsani A, Martelli F;
RT "Deep-sequencing of endothelial cells exposed to hypoxia reveals the
RT complexity of known and novel microRNAs";
RL RNA. 18:472-484(2012).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-216; hsa-miR-216.
DR HGNC; 31593; MIR216A.
DR ENTREZGENE; 406998; MIR216A.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the 5' end mapped by PCR. The mature
CC sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0000273"
FT /product="hsa-miR-216a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT /similarity="MI0001382"
FT miRNA 58..79
FT /accession="MIMAT0022844"
FT /product="hsa-miR-216a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 110 BP; 27 A; 26 C; 26 G; 0 T; 31 other;
gauggcugug aguuggcuua aucucagcug gcaacuguga gauguucaua caaucccuca 60
caguggucuc ugggauuaug cuaaacagag caauuuccua gcccucacga 110
//
ID hsa-mir-218-1 standard; RNA; HSA; 110 BP.
XX
AC MI0000294;
XX
DE Homo sapiens miR-218-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-218; hsa-miR-218.
DR HGNC; 31595; MIR218-1.
DR ENTREZGENE; 407000; MIR218-1.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the 5' end mapped by PCR. Landgraf
CC et al. later verified the expression of miR-218 in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0000275"
FT /product="hsa-miR-218-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000958"
FT miRNA 68..89
FT /accession="MIMAT0004565"
FT /product="hsa-miR-218-1-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 110 BP; 28 A; 21 C; 28 G; 0 T; 33 other;
gugauaaugu agcgagauuu ucuguugugc uugaucuaac caugugguug cgagguauga 60
guaaaacaug guuccgucaa gcaccaugga acgucacgca gcuuucuaca 110
//
ID hsa-mir-218-2 standard; RNA; HSA; 110 BP.
XX
AC MI0000295;
XX
DE Homo sapiens miR-218-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-218; hsa-miR-218.
DR HGNC; 31596; MIR218-2.
DR ENTREZGENE; 407001; MIR218-2.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the 5' end mapped by PCR. Landgraf
CC et al. confirm expression in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0000275"
FT /product="hsa-miR-218-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000957"
FT miRNA 67..88
FT /accession="MIMAT0004566"
FT /product="hsa-miR-218-2-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 110 BP; 23 A; 29 C; 32 G; 0 T; 26 other;
gaccagucgc ugcggggcuu uccuuugugc uugaucuaac cauguggugg aacgauggaa 60
acggaacaug guucugucaa gcaccgcgga aagcaccgug cucuccugca 110
//
ID hsa-mir-219a-1 standard; RNA; HSA; 110 BP.
XX
AC MI0000296;
XX
DE Homo sapiens miR-219a-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-219; hsa-miR-219.
DR HGNC; 31597; MIR219-1.
DR ENTREZGENE; 407002; MIR219-1.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the 5' excised
CC miR has been validated in zebrafish, and the 5' end mapped by PCR [2]. The
CC mature products were later validated in human [3]. Two hairpin precursor
CC structures are predicted, mir-219-1 on chromosome 6 (MIR:MI0000296) and
CC mir-219-2 on chromosome 9 (MIR:MI0000740) [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0000276"
FT /product="hsa-miR-219a-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0001384"
FT miRNA 62..83
FT /accession="MIMAT0004567"
FT /product="hsa-miR-219a-1-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 110 BP; 17 A; 42 C; 33 G; 0 T; 18 other;
ccgccccggg ccgcggcucc ugauugucca aacgcaauuc ucgagucuau ggcuccggcc 60
gagaguugag ucuggacguc ccgagccgcc gcccccaaac cucgagcggg 110
//
ID hsa-mir-221 standard; RNA; HSA; 110 BP.
XX
AC MI0000298;
XX
DE Homo sapiens miR-221 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [5]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-221; hsa-miR-221.
DR HGNC; 31601; MIR221.
DR ENTREZGENE; 407006; MIR221.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and later validated in human HL-60
CC leukemia cells [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0004568"
FT /product="hsa-miR-221-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 65..87
FT /accession="MIMAT0000278"
FT /product="hsa-miR-221-3p"
FT /evidence=experimental
FT /experiment="cloned [2-4], Illumina [5]"
FT /similarity="MI0001387"
XX
SQ Sequence 110 BP; 25 A; 24 C; 28 G; 0 T; 33 other;
ugaacaucca ggucuggggc augaaccugg cauacaaugu agauuucugu guucguuagg 60
caacagcuac auugucugcu ggguuucagg cuaccuggaa acauguucuc 110
//
ID hsa-mir-222 standard; RNA; HSA; 110 BP.
XX
AC MI0000299;
XX
DE Homo sapiens miR-222 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-222; hsa-miR-222.
DR HGNC; 31602; MIR222.
DR ENTREZGENE; 407007; MIR222.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC was validated in zebrafish, and the ends mapped by cloning. Subsequent
CC cloning studies have also verified the expression of miR-222 in human ES
CC cells. The mature sequence shown here represents the most commonly cloned
CC form from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..52
FT /accession="MIMAT0004569"
FT /product="hsa-miR-222-5p"
FT /evidence=experimental
FT /experiment="cloned [4]"
FT miRNA 69..89
FT /accession="MIMAT0000279"
FT /product="hsa-miR-222-3p"
FT /evidence=experimental
FT /experiment="cloned [2-5], Northern [2]"
XX
SQ Sequence 110 BP; 21 A; 27 C; 29 G; 0 T; 33 other;
gcugcuggaa gguguaggua cccucaaugg cucaguagcc aguguagauc cugucuuucg 60
uaaucagcag cuacaucugg cuacuggguc ucugauggca ucuucuagcu 110
//
ID hsa-mir-223 standard; RNA; HSA; 110 BP.
XX
AC MI0000300;
XX
DE Homo sapiens miR-223 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-223; hsa-miR-223.
DR HGNC; 31603; MIR223.
DR ENTREZGENE; 407008; MIR223.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the 5' end mapped by PCR. Landgraf
CC et al. confirm expression in human [2]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..47
FT /accession="MIMAT0004570"
FT /product="hsa-miR-223-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 68..89
FT /accession="MIMAT0000280"
FT /product="hsa-miR-223-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0001389"
XX
SQ Sequence 110 BP; 23 A; 31 C; 28 G; 0 T; 28 other;
ccuggccucc ugcagugcca cgcuccgugu auuugacaag cugaguugga cacuccaugu 60
gguagagugu caguuuguca aauaccccaa gugcggcaca ugcuuaccag 110
//
ID hsa-mir-224 standard; RNA; HSA; 81 BP.
XX
AC MI0000301;
XX
DE Homo sapiens miR-224 stem-loop
XX
RN [1]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
RC Erratum RNA 9:631-632(2003).
XX
RN [2]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [5]
RX PUBMED; 19015728.
RA Tzur G, Levy A, Meiri E, Barad O, Spector Y, Bentwich Z, Mizrahi L,
RA Katzenellenbogen M, Ben-Shushan E, Reubinoff BE, Galun E;
RT "MicroRNA expression patterns and function in endodermal differentiation
RT of human embryonic stem cells";
RL PLoS One. 3:e3726(2008).
XX
RN [6]
RX PUBMED; 19144710.
RA Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G;
RT "Identification of novel Epstein-Barr virus microRNA genes from
RT nasopharyngeal carcinomas";
RL J Virol. 83:3333-3341(2009).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-224; hsa-miR-224.
DR HGNC; 31604; MIR224.
DR ENTREZGENE; 407009; MIR224.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..31
FT /accession="MIMAT0000281"
FT /product="hsa-miR-224-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4]"
FT miRNA 53..75
FT /accession="MIMAT0009198"
FT /product="hsa-miR-224-3p"
FT /evidence=experimental
FT /experiment="qRT-PCR [5], 454 [6]"
XX
SQ Sequence 81 BP; 19 A; 16 C; 20 G; 0 T; 26 other;
gggcuuucaa gucacuagug guuccguuua guagaugauu gugcauuguu ucaaaauggu 60
gcccuaguga cuacaaagcc c 81
//
ID cel-mir-124 standard; RNA; CEL; 96 BP.
XX
AC MI0000302;
XX
DE Caenorhabditis elegans miR-124 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; C29E6/8322-8417; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..40
FT /accession="MIMAT0015111"
FT /product="cel-miR-124-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [5]"
FT miRNA 61..81
FT /accession="MIMAT0000282"
FT /product="cel-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], 454 [3], Illumina
FT [4], CLIPseq [5]"
XX
SQ Sequence 96 BP; 21 A; 26 C; 25 G; 0 T; 24 other;
gucccacuug ucaucuggca ugcacccuag ugacuuuagu ggacaucuaa gucuuccaac 60
uaaggcacgc ggugaaugcc acguggccau gauggg 96
//
ID cel-mir-228 standard; RNA; CEL; 98 BP.
XX
AC MI0000303;
XX
DE Caenorhabditis elegans miR-228 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; T12E12/23964-24061; .
XX
CC This precursor sequence was predicted by comparative computational
CC approaches [1,2]. Northern blotting confirmed that the strand containing
CC the predicted miR is predominantly expressed, and the 5' and 3' ends were
CC confirmed later [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000283"
FT /product="cel-miR-228-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1,3], PCR [3], 454 [4],
FT Illumina [5,7], CLIPseq [6]"
FT miRNA 58..79
FT /accession="MIMAT0020327"
FT /product="cel-miR-228-3p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
XX
SQ Sequence 98 BP; 26 A; 25 C; 25 G; 0 T; 22 other;
ccuuaucccg uucgcaaugg cacugcauga auucacggcu augcauaacg acagaccgcg 60
gaucauacgg uaccauagcg gacggugaug agguuaau 98
//
ID cel-mir-229 standard; RNA; CEL; 115 BP.
XX
AC MI0000304;
XX
DE Caenorhabditis elegans miR-229 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
CC The extents of the dominant mature miRNA species are adjusted here in
CC accordance with a large scale cloning and sequencing study [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..33
FT /accession="MIMAT0000284"
FT /product="cel-miR-229-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], 454 [3], Illumina
FT [4], CLIPseq [5]"
FT miRNA 88..109
FT /accession="MIMAT0015112"
FT /product="cel-miR-229-3p"
FT /evidence=experimental
FT /experiment="CLIPseq [5]"
XX
SQ Sequence 115 BP; 26 A; 27 C; 31 G; 0 T; 31 other;
cgccggcaau gacacugguu aucuuuucca ucguggaaug ccccccauug auuuuuuccc 60
cuuuucgggg ggaaaaaauu ggaaacgaga aagguaucgg gugucauagc cggcg 115
//
ID cel-mir-230 standard; RNA; CEL; 98 BP.
XX
AC MI0000305;
XX
DE Caenorhabditis elegans miR-230 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; F46G11/21083-21180; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0015113"
FT /product="cel-miR-230-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [5]"
FT miRNA 61..83
FT /accession="MIMAT0000285"
FT /product="cel-miR-230-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], 454 [3], Illumina
FT [4], CLIPseq [5]"
XX
SQ Sequence 98 BP; 27 A; 14 C; 24 G; 0 T; 33 other;
uugauguaau gccgucacuu ggucggcgau uuaauauuau cagaacauag gaaauuguua 60
guauuaguug ugcgaccagg agacgguauu cgcauauu 98
//
ID cel-mir-231 standard; RNA; CEL; 99 BP.
XX
AC MI0000306;
XX
DE Caenorhabditis elegans miR-231 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; R13A5/6444-6346; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0020328"
FT /product="cel-miR-231-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 61..84
FT /accession="MIMAT0000286"
FT /product="cel-miR-231-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], 454 [3], Illumina
FT [4,6], CLIPseq [5]"
XX
SQ Sequence 99 BP; 32 A; 18 C; 19 G; 0 T; 30 other;
uagcaccaca gguuguucug acuguuucaa aagcuuguag uaucuuaaua aauaaacaua 60
uaagcucgug aucaacaggc agaacaacuc gguuuugug 99
//
ID cel-mir-232 standard; RNA; CEL; 98 BP.
XX
AC MI0000307;
XX
DE Caenorhabditis elegans miR-232 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F13H10/3269-3172; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0020777"
FT /product="cel-miR-232-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 61..83
FT /accession="MIMAT0000287"
FT /product="cel-miR-232-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], 454 [3], Illumina
FT [4,6], CLIPseq [5]"
XX
SQ Sequence 98 BP; 28 A; 16 C; 18 G; 0 T; 36 other;
aaguucaauu uuuggauccc ugcaguuucg augauuuuau ccuuaauucu gaagauguga 60
uaaaugcauc uuaacugcgg ugaucuagau caugaaca 98
//
ID cel-mir-233 standard; RNA; CEL; 98 BP.
XX
AC MI0000308;
XX
DE Caenorhabditis elegans miR-233 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; W03G11/505-408; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0020329"
FT /product="cel-miR-233-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 61..83
FT /accession="MIMAT0000288"
FT /product="cel-miR-233-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], 454 [3], Illumina
FT [4,6], CLIPseq [5]"
XX
SQ Sequence 98 BP; 24 A; 24 C; 21 G; 0 T; 29 other;
auauagcauc uuucugucuc gcccaucccg uugcuccaau auucuaacaa caagugauua 60
uugagcaaug cgcaugugcg ggauagacug auggcugc 98
//
ID cel-mir-234 standard; RNA; CEL; 96 BP.
XX
AC MI0000309;
XX
DE Caenorhabditis elegans miR-234 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; C13B4/1971-1876; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0020330"
FT /product="cel-miR-234-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 61..81
FT /accession="MIMAT0000289"
FT /product="cel-miR-234-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], 454 [3], Illumina
FT [4,6], CLIPseq [5]"
XX
SQ Sequence 96 BP; 34 A; 18 C; 16 G; 0 T; 28 other;
caaaaaauga ucaaacggua uuccagaguu gauaauaaaa augcgucagu ccgcaaucua 60
uuauugcucg agaauacccu uugacuacua ugugua 96
//
ID cel-mir-235 standard; RNA; CEL; 97 BP.
XX
AC MI0000310;
XX
DE Caenorhabditis elegans miR-235 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; T09B4/12737-12641; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0020331"
FT /product="cel-miR-235-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 61..82
FT /accession="MIMAT0000290"
FT /product="cel-miR-235-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], 454 [3], Illumina
FT [4,6], CLIPseq [5]"
XX
SQ Sequence 97 BP; 27 A; 22 C; 23 G; 0 T; 25 other;
uccgaagaua ucaggaucag gccuuggcug auugcaaaau uguucaccgu gaaaauuaaa 60
uauugcacuc uccccggccu gaucugagag uaaggcg 97
//
ID cel-mir-236 standard; RNA; CEL; 98 BP.
XX
AC MI0000311;
XX
DE Caenorhabditis elegans miR-236 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; C52E12/37215-37118; .
XX
CC This precursor sequence was predicted by comparative computational
CC approaches [1,3]. The excised miRNA sequence was predicted to comprise
CC bases 64 to 87, and the precise 5' and 3' ends were determined later [4].
CC Northern blotting confirmed that the strand containing the predicted miR
CC is predominantly expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..42
FT /accession="MIMAT0020332"
FT /product="cel-miR-236-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 61..83
FT /accession="MIMAT0000291"
FT /product="cel-miR-236-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4], Northern [1,3], PCR [3],
FT Illumina [5,7], CLIPseq [6]"
XX
SQ Sequence 98 BP; 26 A; 20 C; 21 G; 0 T; 31 other;
ucggugaccg auguccagcg ucuuaccugu ucaauauuua gacugacuau caaagagauc 60
uaauacuguc agguaaugac gcuggauugu caugucau 98
//
ID cel-mir-237 standard; RNA; CEL; 99 BP.
XX
AC MI0000312;
XX
DE Caenorhabditis elegans miR-237 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F22F1/5536-5634; .
XX
CC The sequence is reported to be related to lin-4 [2]. The extents of the
CC dominant mature miRNA species are adjusted here in accordance with a large
CC scale cloning and sequencing study [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000292"
FT /product="cel-miR-237-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], Illumina [4,6],
FT CLIPseq [5]"
FT miRNA 53..74
FT /accession="MIMAT0020333"
FT /product="cel-miR-237-3p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
XX
SQ Sequence 99 BP; 29 A; 21 C; 22 G; 0 T; 27 other;
uucuacauug cguggucccu gagaauucuc gaacagcuuc aaaguguuca agcugucgag 60
uuuugucaag gaccaaacaa uagaagauca cuugggaac 99
//
ID cel-mir-238 standard; RNA; CEL; 98 BP.
XX
AC MI0000313;
XX
DE Caenorhabditis elegans miR-238 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; K01F9/3114-3017; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0015114"
FT /product="cel-miR-238-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [5]"
FT miRNA 61..83
FT /accession="MIMAT0000293"
FT /product="cel-miR-238-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], Illumina [4],
FT CLIPseq [5]"
XX
SQ Sequence 98 BP; 24 A; 22 C; 20 G; 0 T; 32 other;
ucuccauuga cuguuuggau guucucggac guucaaagcu acauccaaca aauugguagc 60
uuuguacucc gaugccauuc agauaguuau gagccaug 98
//
ID cel-mir-239a standard; RNA; CEL; 98 BP.
XX
AC MI0000314;
XX
DE Caenorhabditis elegans miR-239a stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; C34E11/1222-1319; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000294"
FT /product="cel-miR-239a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], Illumina [4,6],
FT CLIPseq [5]"
FT miRNA 59..80
FT /accession="MIMAT0020334"
FT /product="cel-miR-239a-3p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
XX
SQ Sequence 98 BP; 27 A; 17 C; 18 G; 0 T; 36 other;
uacacguuug caauuuuugu acuacacaua gguacuggac aauuuucaaa auauauccag 60
ugucuagucu agugcaaaca uugcucggug uuguuuga 98
//
ID cel-mir-239b standard; RNA; CEL; 98 BP.
XX
AC MI0000315;
XX
DE Caenorhabditis elegans miR-239b stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 15317971.
RA Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB;
RT "Patterns of flanking sequence conservation and a characteristic upstream
RT motif for microRNA gene identification";
RL RNA. 10:1309-1322(2004).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; C34E11/176-79; .
XX
CC miR-239b was predicted by computational analysis and conservation in C.
CC elegans and C. briggsae, and the microRNA confirmed by PCR amplification,
CC cloning and sequencing [1]. A large scale cloning and sequencing study
CC finds two dominant mature miRNA products: the second is 1 nt shorter at
CC the 5' end [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000295"
FT /product="cel-miR-239b-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4], CLIPseq [5]"
FT /similarity="MI0000314"
FT miRNA 58..79
FT /accession="MIMAT0015115"
FT /product="cel-miR-239b-3p"
FT /evidence=experimental
FT /experiment="CLIPseq [5]"
XX
SQ Sequence 98 BP; 27 A; 16 C; 22 G; 0 T; 33 other;
gcgacagaug caauuuuugu acuacacaaa aguacugguc auuuaaguug aggcucagca 60
cuuuuguggu gugcaaaaau ggcaaguugc uuuuaucu 98
//
ID cel-mir-240 standard; RNA; CEL; 97 BP.
XX
AC MI0000316;
XX
DE Caenorhabditis elegans miR-240 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [5]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; C39D10/9215-9311; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0015116"
FT /product="cel-miR-240-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [4], Illumina [5]"
FT miRNA 61..82
FT /accession="MIMAT0000296"
FT /product="cel-miR-240-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3,5],
FT CLIPseq [4]"
XX
SQ Sequence 97 BP; 30 A; 18 C; 17 G; 0 T; 32 other;
uuguuagaaa cuuuuucaaa ucgaggauuu ugagacuaga augcuugaau uguacuagca 60
uacuggcccc caaaucuucg cuuagaaaua caguuca 97
//
ID cel-mir-241 standard; RNA; CEL; 96 BP.
XX
AC MI0000317;
XX
DE Caenorhabditis elegans miR-241 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [5]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F56A12/7696-7601; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0000297"
FT /product="cel-miR-241-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3,5],
FT CLIPseq [4]"
FT miRNA 60..81
FT /accession="MIMAT0020335"
FT /product="cel-miR-241-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 96 BP; 22 A; 19 C; 28 G; 0 T; 27 other;
cggggguguc aaaguugagg uaggugcgag aaaugacggc auccauauag uaaucguuca 60
uugucucuca gcugcuucau cugugacaug gcuacg 96
//
ID cel-mir-243 standard; RNA; CEL; 98 BP.
XX
AC MI0000319;
XX
DE Caenorhabditis elegans miR-243 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; R08C7/29717-29814; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..38
FT /accession="MIMAT0015117"
FT /product="cel-miR-243-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [4]"
FT miRNA 61..83
FT /accession="MIMAT0000299"
FT /product="cel-miR-243-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3],
FT CLIPseq [4]"
XX
SQ Sequence 98 BP; 22 A; 23 C; 27 G; 0 T; 26 other;
uguucacgca uaagccugau aucucggugc gaucguaccg uaucgcucac acuuagauua 60
cgguacgauc gcggcgggau aucagguacg ugauugga 98
//
ID cel-mir-244 standard; RNA; CEL; 99 BP.
XX
AC MI0000320;
XX
DE Caenorhabditis elegans miR-244 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; T04D1/15168-15070; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0000300"
FT /product="cel-miR-244-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3],
FT CLIPseq [4]"
FT miRNA 58..78
FT /accession="MIMAT0015118"
FT /product="cel-miR-244-3p"
FT /evidence=experimental
FT /experiment="CLIPseq [4]"
XX
SQ Sequence 99 BP; 26 A; 18 C; 19 G; 0 T; 36 other;
cuccauaucu caaucucuuu gguuguacaa agugguaugg cucaucgaau aagcacauac 60
ugcuuuucag cuaaaggaau ugagauuuug uaggcuuuu 99
//
ID cel-mir-246 standard; RNA; CEL; 97 BP.
XX
AC MI0000322;
XX
DE Caenorhabditis elegans miR-246 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [5]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; ZK593/30340-30436; .
XX
CC The extents of the dominant mature miRNA species are adjusted here in
CC accordance with a large scale cloning and sequencing study [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0020337"
FT /product="cel-miR-246-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 61..81
FT /accession="MIMAT0000302"
FT /product="cel-miR-246-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3,5],
FT CLIPseq [4]"
XX
SQ Sequence 97 BP; 31 A; 17 C; 18 G; 0 T; 31 other;
aucugaauua uaaaacaucg ccuaaccguu gucauguaau auuucccaga gaaaaugaua 60
uuacauguuu cggguaggag cuguucaaac uuuggac 97
//
ID cel-mir-250 standard; RNA; CEL; 99 BP.
XX
AC MI0000326;
XX
DE Caenorhabditis elegans miR-250 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [5]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F55A11/6590-6492; .
XX
CC The extents of the dominant mature miRNA species are adjusted here in
CC accordance with a large scale cloning and sequencing study [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0020339"
FT /product="cel-miR-250-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 60..79
FT /accession="MIMAT0000306"
FT /product="cel-miR-250-3p"
FT /evidence=experimental
FT /experiment="Northern [1-2], PCR [1], Illumina [3,5],
FT CLIPseq [4]"
XX
SQ Sequence 99 BP; 24 A; 28 C; 22 G; 0 T; 25 other;
agggucuucg gaccacgccu ucaguugccu cgugauccgc caaacacaau aaauggacga 60
aucacaguca acuguuggca uggugcucgu acccauuuu 99
//
ID cel-mir-252 standard; RNA; CEL; 98 BP.
XX
AC MI0000328;
XX
DE Caenorhabditis elegans miR-252 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [5]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; W02B12/2049-1952; .
XX
CC The extents of the dominant mature miRNA species are adjusted here in
CC accordance with a large scale cloning and sequencing study [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..43
FT /accession="MIMAT0000308"
FT /product="cel-miR-252-5p"
FT /evidence=experimental
FT /experiment="Northern [1-2], PCR [1], Illumina [3,5],
FT CLIPseq [4]"
FT miRNA 60..78
FT /accession="MIMAT0020340"
FT /product="cel-miR-252-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 98 BP; 26 A; 21 C; 21 G; 0 T; 30 other;
uccagggguc ucuuucaguu auaaguagua gugccgcagg uaaccgccag ucuaaaaggc 60
uuaccuacug ccuucugcuu aaaauugaaa uauugaug 98
//
ID cel-mir-253 standard; RNA; CEL; 107 BP.
XX
AC MI0000329;
XX
DE Caenorhabditis elegans miR-253 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [5]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F44E7/10412-10306; .
XX
CC A mature miRNA product from the 5' arm of this hairpin precursor was first
CC identified [1]. A later large scale cloning and sequencing study
CC identified a 3' product and showed it to be the dominant mature miRNA [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0000309"
FT /product="cel-miR-253-5p"
FT /evidence=experimental
FT /experiment="Northern [1], PCR [1], CLIPseq [4], Illumina
FT [5]"
FT miRNA 64..85
FT /accession="MIMAT0004215"
FT /product="cel-miR-253-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3,5], CLIPseq [4]"
XX
SQ Sequence 107 BP; 24 A; 28 C; 28 G; 0 T; 27 other;
gaauuguucc gaucgccgcu cuuuucacac accucacuaa cacugaccac cgaugcauag 60
auguuaguag gcguuguggg aagggcggcg acagugaacg ucguuuc 107
//
ID cel-mir-254 standard; RNA; CEL; 100 BP.
XX
AC MI0000330;
XX
DE Caenorhabditis elegans miR-254 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
DR WORMBASE; ZK455/13690-13591; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0031891"
FT /product="cel-miR-254-5p"
FT /evidence=experimental
FT /experiment="454 [2]"
FT miRNA 59..75
FT /accession="MIMAT0000310"
FT /product="cel-miR-254-3p"
FT /evidence=experimental
FT /experiment="Northern [1-2], PCR [1], Illumina [3]"
XX
SQ Sequence 100 BP; 26 A; 23 C; 22 G; 0 T; 29 other;
acuaugcaua uugccgccua cagaagcaua gauuuccaca aaccauucga gguguuugug 60
caaaucuuuc gcgacuguag gcggcgaaca ugcaguuuuu 100
//
ID cel-mir-255 standard; RNA; CEL; 110 BP.
XX
AC MI0000331;
XX
DE Caenorhabditis elegans miR-255 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [5]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F08F3/31040-31149; .
XX
CC This precursor sequence was identified computationally using sequence
CC homology with C. briggsae [1]. The mature microRNA was identified later
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0020341"
FT /product="cel-miR-255-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 62..83
FT /accession="MIMAT0004216"
FT /product="cel-miR-255-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3,5], CLIPseq [4]"
XX
SQ Sequence 110 BP; 34 A; 15 C; 22 G; 0 T; 39 other;
cagugguucg acuaaauuuu ggagguaaga aaucuuugua guucuccgua uugugacgug 60
aaaacugaag agauuuuuua cagacuucac aaauuugaaa uauauuccug 110
//
ID cel-mir-259 standard; RNA; CEL; 101 BP.
XX
AC MI0000336;
XX
DE Caenorhabditis elegans miR-259 stem-loop
XX
RN [1]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [2]
RX PUBMED; 15317971.
RA Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB;
RT "Patterns of flanking sequence conservation and a characteristic upstream
RT motif for microRNA gene identification";
RL RNA. 10:1309-1322(2004).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F25D1/9529-9429; .
XX
CC miR-259 was predicted by computational analysis and conservation in C.
CC elegans and C. briggsae, and the microRNA confirmed by PCR amplification,
CC cloning and sequencing [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..42
FT /accession="MIMAT0000314"
FT /product="cel-miR-259-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4,6], CLIPseq [5]"
FT miRNA 57..80
FT /accession="MIMAT0020342"
FT /product="cel-miR-259-3p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
XX
SQ Sequence 101 BP; 26 A; 20 C; 19 G; 0 T; 36 other;
ucagucauug aaacgaguaa aucucauccu aaucugguag caucuuucga accuugccac 60
cgauuuggca ugggauugac uuguuaaaua gugacuuuuu u 101
//
ID hsa-mir-200b standard; RNA; HSA; 95 BP.
XX
AC MI0000342;
XX
DE Homo sapiens miR-200b stem-loop
XX
RN [1]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-200b; hsa-miR-200b.
DR HGNC; 31579; MIR200B.
DR ENTREZGENE; 406984; MIR200B.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0004571"
FT /product="hsa-miR-200b-5p"
FT /evidence=experimental
FT /experiment="cloned [4]"
FT miRNA 57..78
FT /accession="MIMAT0000318"
FT /product="hsa-miR-200b-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2-5]"
XX
SQ Sequence 95 BP; 18 A; 26 C; 31 G; 0 T; 20 other;
ccagcucggg cagccguggc caucuuacug ggcagcauug gauggaguca ggucucuaau 60
acugccuggu aaugaugacg gcggagcccu gcacg 95
//
ID dme-mir-263a standard; RNA; DME; 94 BP.
XX
AC MI0000343;
XX
DE Drosophila melanogaster miR-263a stem-loop
XX
RN [1]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
RN [2]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-263a; miR-263a.
DR TARGETS:PICTAR-FLY; dme-miR-263a; dme-miR-263a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..41
FT /accession="MIMAT0000319"
FT /product="dme-miR-263a-5p"
FT /evidence=experimental
FT /experiment="Northern [1], 454 [3-4], Illumina [4]"
FT /similarity="MI0000343"
FT miRNA 59..80
FT /accession="MIMAT0020799"
FT /product="dme-miR-263a-3p"
FT /evidence=not_experimental
XX
SQ Sequence 94 BP; 27 A; 17 C; 23 G; 0 T; 27 other;
uagaucucgg cacaguuaau ggcacuggaa gaauucacgg gguaauuuuu auacaacccg 60
ugaucucuua guggcaucua uggugcgaga auaa 94
//
ID dme-mir-184 standard; RNA; DME; 100 BP.
XX
AC MI0000354;
XX
DE Drosophila melanogaster miR-184 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-184; miR-184.
DR TARGETS:MIRTE; miR-184S; miR-184S.
DR TARGETS:PICTAR-FLY; dme-miR-184; dme-miR-184.
DR TARGETS:PICTAR-FLY; dme-miR-184*; dme-miR-184*.
XX
CC miR-184 was reported independently in references [1] and [2].
CC Computational prediction followed by northern blotting confirmed that the
CC strand containing the predicted miR is predominantly expressed [1].
CC Reference [2] confirmed the 5' end of the excised miRNA by cloning and
CC reported a length distribution of 19-23 nt with 22 nt the most commonly
CC expressed. They also reported the less predominantly expressed sequence
CC miR-184* from the opposite 5' arm.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..42
FT /accession="MIMAT0000330"
FT /product="dme-miR-184-5p"
FT /evidence=experimental
FT /experiment="cloned [2], 454 [3-4], Illumina [4]"
FT /similarity="MI0000354"
FT miRNA 61..82
FT /accession="MIMAT0000331"
FT /product="dme-miR-184-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2], 454 [3-4], Illumina
FT [4]"
FT /similarity="MI0000354"
XX
SQ Sequence 100 BP; 23 A; 28 C; 23 G; 0 T; 26 other;
gguuggccgg ugcauucgua cccuuaucau ucucucgccc cgugugcacu uaaagacaac 60
uggacggaga acugauaagg gcucguauca ccaauucauc 100
//
ID dme-mir-274 standard; RNA; DME; 100 BP.
XX
AC MI0000355;
XX
DE Drosophila melanogaster miR-274 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-274; miR-274.
XX
CC This sequence is computationally predicted based on conservation in D.
CC pseudoobscura. The precise 5' or 3' ends are unknown. Northern blotting
CC confirmed that the strand containing the predicted miR is predominantly
CC expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0000332"
FT /product="dme-miR-274-5p"
FT /evidence=experimental
FT /experiment="Northern [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000355"
FT miRNA 64..86
FT /accession="MIMAT0020800"
FT /product="dme-miR-274-3p"
FT /evidence=not_experimental
XX
SQ Sequence 100 BP; 23 A; 20 C; 23 G; 0 T; 34 other;
uccuguguug caguuucguu uugugaccga cacuaacggg uaauuguuug gccgccagga 60
uuacucguuu uugcgaucac aaauuaugaa auugcagcaa 100
//
ID dme-mir-275 standard; RNA; DME; 98 BP.
XX
AC MI0000356;
XX
DE Drosophila melanogaster miR-275 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-275; miR-275.
DR TARGETS:PICTAR-FLY; dme-miR-275; dme-miR-275.
XX
CC miR-275 was reported independently in references [1] and [2].
CC Computational prediction followed by northern blotting confirmed that the
CC strand containing the predicted miR is predominantly expressed [1].
CC Reference [2] confirmed the 5' end of the excised miRNA by cloning and
CC reported a length distribution of 19-25 nt with 22 nt the most commonly
CC expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0020801"
FT /product="dme-miR-275-5p"
FT /evidence=not_experimental
FT miRNA 59..81
FT /accession="MIMAT0000333"
FT /product="dme-miR-275-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2], 454 [3-4], Illumina
FT [4]"
FT /similarity="MI0000356"
XX
SQ Sequence 98 BP; 22 A; 21 C; 27 G; 0 T; 28 other;
uguaaagucu ccuaccuugc gcgcuaauca gugaccgggg cugguuuuuu auauacaguc 60
agguaccuga aguagcgcgc gugguggcag acauauau 98
//
ID dme-mir-92a standard; RNA; DME; 95 BP.
XX
AC MI0000357;
XX
DE Drosophila melanogaster miR-92a stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-92a; miR-92a.
DR TARGETS:PICTAR-FLY; dme-miR-92a; dme-miR-92a.
XX
CC miR-92a was reported independently in references [1] and [2].
CC Computational prediction followed by northern blotting confirmed that the
CC strand containing the predicted miR is predominantly expressed [1].
CC Reference [2] confirmed the 5' end of the excised miRNA by cloning and
CC reported a length distribution of 22-25 nt with 22 nt the most commonly
CC expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0020802"
FT /product="dme-miR-92a-5p"
FT /evidence=not_experimental
FT miRNA 55..76
FT /accession="MIMAT0000334"
FT /product="dme-miR-92a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [3], 454 [4-5], Illumina
FT [5]"
FT /similarity="MI0000357"
XX
SQ Sequence 95 BP; 26 A; 18 C; 23 G; 0 T; 28 other;
aauaugaauu ucccguagga cgggaaggug ucaacguuuu gcauuucgaa uaaacauugc 60
acuugucccg gccuaugggc gguuuguaau aaaca 95
//
ID dme-mir-219 standard; RNA; DME; 100 BP.
XX
AC MI0000358;
XX
DE Drosophila melanogaster miR-219 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-219; miR-219.
DR TARGETS:PICTAR-FLY; dme-miR-219; dme-miR-219.
XX
CC This sequence is computationally predicted based on conservation in D.
CC pseudoobscura [1]. The sequence of the excised miR is strikingly
CC conserved in human (MIR:MI0000296), but the expression of the miR has not
CC been confirmed in fly and the precise 5' or 3' ends are unknown.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0000335"
FT /product="dme-miR-219-5p"
FT /evidence=experimental
FT /experiment="454 [2-3], Illumina [3]"
FT /similarity="MI0000358"
FT /similarity="MI0001384"
FT miRNA 59..80
FT /accession="MIMAT0020803"
FT /product="dme-miR-219-3p"
FT /evidence=not_experimental
XX
SQ Sequence 100 BP; 30 A; 18 C; 20 G; 0 T; 32 other;
uaauucgauu uuuagcuaug auuguccaaa cgcaauucuu guugauauuc aauauucaag 60
gguugcgacu gggcaucgcg gcucgaaaua agaauacaac 100
//
ID dme-mir-276a standard; RNA; DME; 98 BP.
XX
AC MI0000359;
XX
DE Drosophila melanogaster miR-276a stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-276a; miR-276a.
DR TARGETS:MIRTE; miR-276aS; miR-276aS.
DR TARGETS:PICTAR-FLY; dme-miR-276a; dme-miR-276a.
XX
CC miR-276 was reported independently in references [1] and [2]. Reference
CC [2] reported a 22 nt excised sequence from the 3' arm of the precursor by
CC cloning. Computational approaches followed by Northern blotting predicted
CC an excised sequence from the 5' arm which is designated miR-276a* here
CC [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000336"
FT /product="dme-miR-276a-5p"
FT /evidence=experimental
FT /experiment="Northern [1], 454 [3-4], Illumina [4]"
FT /similarity="MI0000359"
FT miRNA 54..75
FT /accession="MIMAT0000337"
FT /product="dme-miR-276a-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2], 454 [3-4], Illumina
FT [4]"
FT /similarity="MI0000359"
XX
SQ Sequence 98 BP; 30 A; 23 C; 19 G; 0 T; 26 other;
ccugguuuuu gccaucagcg agguauagag uuccuacguu cauuauaaac ucguaggaac 60
uucauaccgu gcucuuggaa gaccaaaaaa caaccaag 98
//
ID dme-mir-277 standard; RNA; DME; 100 BP.
XX
AC MI0000360;
XX
DE Drosophila melanogaster miR-277 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 14691535.
RA Stark A, Brennecke J, Russell RB, Cohen SM;
RT "Identification of Drosophila MicroRNA targets";
RL PLoS Biol. 1:E60(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-277; miR-277.
DR TARGETS:PICTAR-FLY; dme-miR-277; dme-miR-277.
XX
CC miR-277 was reported independently in references [1] and [2].
CC Computational prediction followed by northern blotting confirmed that the
CC strand containing the predicted miR is predominantly expressed [1].
CC Reference [2] confirmed the 5' end of the excised miRNA by cloning and
CC reported a length distribution of 21-23 nt with 23 nt the most commonly
CC expressed. Stark et al. [3] have predicted that miR-277 controls the
CC pathway for valine, leucine and isoleucine degradation by downregulating
CC many of its enzymes.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..38
FT /accession="MIMAT0020804"
FT /product="dme-miR-277-5p"
FT /evidence=not_experimental
FT miRNA 59..81
FT /accession="MIMAT0000338"
FT /product="dme-miR-277-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2], 454 [4-5], Illumina
FT [5]"
FT /similarity="MI0000360"
XX
SQ Sequence 100 BP; 27 A; 19 C; 24 G; 0 T; 30 other;
uugaagguuu ugggcugcgu gucaggagug cauuugcacu gaaacuaucu gaagcaugua 60
aaugcacuau cugguacgac auuccagaac guacaaucuu 100
//
ID dme-mir-278 standard; RNA; DME; 98 BP.
XX
AC MI0000361;
XX
DE Drosophila melanogaster miR-278 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
CC miR-278 was reported independently in references [1] and [2].
CC Computational prediction followed by northern blotting confirmed that the
CC strand containing the predicted miR is predominantly expressed [1].
CC Reference [2] confirmed the 5' end of the excised miRNA by cloning and
CC reported a length distribution of 20-22 nt with 22 nt the most commonly
CC expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..40
FT /accession="MIMAT0020805"
FT /product="dme-miR-278-5p"
FT /evidence=not_experimental
FT miRNA 57..78
FT /accession="MIMAT0000339"
FT /product="dme-miR-278-3p"
FT /evidence=experimental
FT /experiment="Northern [1-2], cloned [2], 454 [3-4],
FT Illumina [4]"
FT /similarity="MI0000361"
XX
SQ Sequence 98 BP; 21 A; 21 C; 29 G; 0 T; 27 other;
guaaugguac ggugcgaccg gaugaugguu cacaacgacc gugucauuua aacgggucgg 60
ugggacuuuc guccguuugu aacgccauuu gucaacga 98
//
ID dme-mir-133 standard; RNA; DME; 98 BP.
XX
AC MI0000362;
XX
DE Drosophila melanogaster miR-133 stem-loop
XX
RN [1]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [2]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-133; miR-133.
DR TARGETS:PICTAR-FLY; dme-miR-133; dme-miR-133.
XX
CC miR-133 was reported independently by three groups using computational
CC prediction [2], Northern blot analysis [1] and cloning [3]. References
CC [1] and [2] confirmed that the strand containing the predicted miR is
CC predominantly expressed [1]. Reference [3] confirmed the ends of the
CC excised miRNA by cloning.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0020806"
FT /product="dme-miR-133-5p"
FT /evidence=not_experimental
FT miRNA 57..78
FT /accession="MIMAT0000340"
FT /product="dme-miR-133-3p"
FT /evidence=experimental
FT /experiment="Northern [1,3], 454 [4-5], Illumina [5]"
FT /similarity="MI0000362"
XX
SQ Sequence 98 BP; 21 A; 24 C; 24 G; 0 T; 29 other;
accugcaaca cuguguguag cugguugaca ucgggucaga ucuguuuuuc aagcauuugg 60
uccccuucaa ccagcuguag ccagugguug augacaac 98
//
ID dme-mir-279 standard; RNA; DME; 100 BP.
XX
AC MI0000363;
XX
DE Drosophila melanogaster miR-279 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-279; miR-279.
DR TARGETS:PICTAR-FLY; dme-miR-279; dme-miR-279.
XX
CC miR-279 was reported independently in references [1] and [2].
CC Computational prediction followed by northern blotting confirmed that the
CC strand containing the predicted miR is predominantly expressed [1].
CC Reference [2] confirmed the ends of the excised miRNA by cloning.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..47
FT /accession="MIMAT0020807"
FT /product="dme-miR-279-5p"
FT /evidence=not_experimental
FT miRNA 67..88
FT /accession="MIMAT0000341"
FT /product="dme-miR-279-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2], 454 [3-4], Illumina
FT [4]"
FT /similarity="MI0000363"
XX
SQ Sequence 100 BP; 23 A; 16 C; 22 G; 0 T; 39 other;
ggaauucaua cuacuguuuu uagugggugg ggguccagug uuucacauug auuuucuuag 60
uauuugugac uagauccaca cucauuaaua acgguaguuc 100
//
ID dme-mir-33 standard; RNA; DME; 99 BP.
XX
AC MI0000364;
XX
DE Drosophila melanogaster miR-33 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-33; miR-33.
DR TARGETS:PICTAR-FLY; dme-miR-33; dme-miR-33.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..46
FT /accession="MIMAT0000342"
FT /product="dme-miR-33-5p"
FT /evidence=experimental
FT /experiment="454 [2-3], Illumina [3]"
FT miRNA 65..86
FT /accession="MIMAT0020808"
FT /product="dme-miR-33-3p"
FT /evidence=not_experimental
XX
SQ Sequence 99 BP; 22 A; 26 C; 21 G; 0 T; 30 other;
cucuuccucu ggagaugaca cgaaggugca uuguagucgc auugucuguc ccaauugcuu 60
caggcaauac aacuucagug caagcucugu gcauuucac 99
//
ID dme-mir-281-1 standard; RNA; DME; 90 BP.
XX
AC MI0000366;
XX
DE Drosophila melanogaster miR-281-1 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-281; miR-281.
DR TARGETS:MIRTE; miR-281aS; miR-281aS.
DR TARGETS:PICTAR-FLY; dme-miR-281; dme-miR-281.
DR TARGETS:PICTAR-FLY; dme-miR-281-1*; dme-miR-281-1*.
XX
CC miR-281 was reported independently in references [1] and [2]. The
CC sequence in this entry is from reference [2] which identified a 23 nt
CC excised sequence from the 3' arm of the precursor by cloning. Reference
CC [1] reported the reverse complement of this foldback precursor from
CC computational prediction and northern blotting. The predicted mature
CC sequence (5' and 3' ends unknown) from the 3' arm of the reverse
CC complement was named miR-281a in reference [1] and is designated
CC miR-281-1* here.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0000344"
FT /product="dme-miR-281-1-5p"
FT /evidence=experimental
FT /experiment="Northern [1], 454 [3-4], Illumina [4]"
FT /similarity="MI0000366"
FT miRNA 58..80
FT /accession="MIMAT0000345"
FT /product="dme-miR-281-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2], 454 [3-4], Illumina
FT [4]"
FT /similarity="MI0000366"
XX
SQ Sequence 90 BP; 29 A; 16 C; 17 G; 0 T; 28 other;
cgaauaagug aauaaagaga gcuguccguc gacaguccag aaacuauuua auaucacugu 60
cauggaauug cucucuuugu auaauauucg 90
//
ID dme-mir-282 standard; RNA; DME; 97 BP.
XX
AC MI0000367;
XX
DE Drosophila melanogaster miR-282 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-282; miR-282.
DR TARGETS:PICTAR-FLY; dme-miR-282; dme-miR-282.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..40
FT /accession="MIMAT0000346"
FT /product="dme-miR-282-5p"
FT /evidence=experimental
FT /experiment="Northern [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000367"
FT miRNA 60..81
FT /accession="MIMAT0020809"
FT /product="dme-miR-282-3p"
FT /evidence=not_experimental
XX
SQ Sequence 97 BP; 27 A; 22 C; 21 G; 0 T; 27 other;
aguuuccuuc uaaaucuagc cucuacuagg cuuugucugu gcauucgaaa gccgaucaga 60
cauagccuau aagagguuag guguaccaag gcgaaca 97
//
ID dme-mir-283 standard; RNA; DME; 100 BP.
XX
AC MI0000368;
XX
DE Drosophila melanogaster miR-283 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-283; miR-283.
DR TARGETS:PICTAR-FLY; dme-miR-283; dme-miR-283.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0000347"
FT /product="dme-miR-283-5p"
FT /evidence=experimental
FT /experiment="Northern [1-2], 454 [3-4], Illumina [4]"
FT /similarity="MI0000368"
FT miRNA 68..88
FT /accession="MIMAT0020810"
FT /product="dme-miR-283-3p"
FT /evidence=not_experimental
XX
SQ Sequence 100 BP; 31 A; 18 C; 19 G; 0 T; 32 other;
cucacacgau ucucaaaggu aaauaucagc ugguaauucu gggagcuaag ccuaaauaug 60
aaacacucgg aauuucaguu gguaucgacu uuuuugaauu 100
//
ID dme-mir-284 standard; RNA; DME; 100 BP.
XX
AC MI0000369;
XX
DE Drosophila melanogaster miR-284 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-284; miR-284.
DR TARGETS:PICTAR-FLY; dme-miR-284; dme-miR-284.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..35
FT /accession="MIMAT0020811"
FT /product="dme-miR-284-5p"
FT /evidence=not_experimental
FT miRNA 68..88
FT /accession="MIMAT0000348"
FT /product="dme-miR-284-3p"
FT /evidence=experimental
FT /experiment="Northern [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000369"
XX
SQ Sequence 100 BP; 24 A; 21 C; 28 G; 0 T; 27 other;
guugcaguuc cuggaauuaa guugacugug uagccuguga gggcaaggcu ugaauaaugc 60
uccugaaguc agcaacuuga uuccagcaau ugcggcccga 100
//
ID dme-mir-281-2 standard; RNA; DME; 92 BP.
XX
AC MI0000370;
XX
DE Drosophila melanogaster miR-281-2 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-281bS; miR-281bS.
DR TARGETS:PICTAR-FLY; dme-miR-281; dme-miR-281.
DR TARGETS:PICTAR-FLY; dme-miR-281-2*; dme-miR-281-2*.
XX
CC miR-281 was reported independently in references [1] and [2]. The
CC sequence in this entry is from reference [2] which identified a 23 nt
CC excised sequence from the 3' arm of the precursor by cloning. Reference
CC [1] reported the reverse complement of this foldback precursor from
CC computational prediction and northern blotting. The predicted mature
CC sequence (5' and 3' ends unknown) from the 3' arm of the reverse
CC complement was named miR-281b in reference [1] and is designated
CC miR-281-2* here.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000349"
FT /product="dme-miR-281-2-5p"
FT /evidence=experimental
FT /experiment="Northern [1], 454 [3-4], Illumina [4]"
FT /similarity="MI0000370"
FT miRNA 60..82
FT /accession="MIMAT0000345"
FT /product="dme-miR-281-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2], 454 [3-4], Illumina
FT [4]"
FT /similarity="MI0000370"
XX
SQ Sequence 92 BP; 28 A; 16 C; 20 G; 0 T; 28 other;
cgaauuguga aaugaagaga gcuauccguc gacagucaag uuaagaccga uuguaauacu 60
gucauggaau ugcucucuuu guauaacauu cg 92
//
ID dme-mir-34 standard; RNA; DME; 99 BP.
XX
AC MI0000371;
XX
DE Drosophila melanogaster miR-34 stem-loop
XX
RN [1]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [2]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-34; miR-34.
DR TARGETS:PICTAR-FLY; dme-miR-34; dme-miR-34.
XX
CC This sequence is computationally predicted based on conservation in D.
CC pseudoobscura and C. elegans. The precise 5' or 3' ends are unknown.
CC Expression in D. melanogaster was confirmed by Northern blot analysis [1].
CC Aravin et al. later identify the 5' and 3' ends by cloning [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..40
FT /accession="MIMAT0000350"
FT /product="dme-miR-34-5p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [3], 454 [4-5], Illumina
FT [5]"
FT /similarity="MI0000371"
FT miRNA 68..90
FT /accession="MIMAT0020812"
FT /product="dme-miR-34-3p"
FT /evidence=not_experimental
XX
SQ Sequence 99 BP; 20 A; 25 C; 25 G; 0 T; 29 other;
aauuggcuau gcgcuuuggc agugugguua gcugguugug uagccaauua uugccguuga 60
caauucacag ccacuaucuu cacugccgcc gcgacaagc 99
//
ID dme-mir-124 standard; RNA; DME; 100 BP.
XX
AC MI0000373;
XX
DE Drosophila melanogaster miR-124 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-124; miR-124.
DR TARGETS:PICTAR-FLY; dme-miR-124; dme-miR-124.
XX
CC miR-124 was reported independently in references [1] and [2].
CC Computational prediction followed by northern blotting confirmed that the
CC strand containing the predicted miR is predominantly expressed [1].
CC Reference [2] confirmed the 5' end of the excised miRNA by cloning and
CC reported a length distribution of 19-23 nt with 23 nt the most commonly
CC expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0020813"
FT /product="dme-miR-124-5p"
FT /evidence=not_experimental
FT miRNA 57..79
FT /accession="MIMAT0000351"
FT /product="dme-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2-3], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000373"
XX
SQ Sequence 100 BP; 25 A; 24 C; 21 G; 0 T; 30 other;
ucauuuggua cguuuuucuc cugguaucca cuguaggccu auauguauuu ccaccauaag 60
gcacgcggug aaugccaaga gcgaacgcag uucuacaaau 100
//
ID dme-mir-79 standard; RNA; DME; 97 BP.
XX
AC MI0000374;
XX
DE Drosophila melanogaster miR-79 stem-loop
XX
RN [1]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [2]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-79; miR-79.
DR TARGETS:PICTAR-FLY; dme-miR-79; dme-miR-79.
XX
CC miR-79 was reported independently by three groups using computational
CC prediction [2], Northern blot analysis [1] and cloning [3]. References
CC [1] and [2] confirmed that the strand containing the predicted miR is
CC predominantly expressed [1]. Reference [3] confirmed the ends of the
CC excised miRNA by cloning.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0020814"
FT /product="dme-miR-79-5p"
FT /evidence=not_experimental
FT miRNA 60..81
FT /accession="MIMAT0000352"
FT /product="dme-miR-79-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [3], 454 [4-5], Illumina
FT [5]"
FT /similarity="MI0000374"
XX
SQ Sequence 97 BP; 26 A; 19 C; 20 G; 0 T; 32 other;
ugaagcugac uugccauugc uuuggcgcuu uagcuguaug auagauuuaa acuacuucau 60
aaagcuagau uaccaaagca uuggcuucug cagguca 97
//
ID dme-mir-276b standard; RNA; DME; 99 BP.
XX
AC MI0000375;
XX
DE Drosophila melanogaster miR-276b stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-276b; miR-276b.
DR TARGETS:PICTAR-FLY; dme-miR-276b; dme-miR-276b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0020815"
FT /product="dme-miR-276b-5p"
FT /evidence=experimental
FT /experiment="Northern [1], 454 [3-4], Illumina [4]"
FT /similarity="MI0000375"
FT miRNA 62..83
FT /accession="MIMAT0000354"
FT /product="dme-miR-276b-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2], 454 [3-4], Illumina
FT [4]"
FT /similarity="MI0000375"
XX
SQ Sequence 99 BP; 26 A; 23 C; 21 G; 0 T; 29 other;
aaaaccgaag ucuuuuuacc aucagcgagg uauagaguuc cuacguuccu auauucaguc 60
guaggaacuu aauaccgugc ucuuggagga cugucgacc 99
//
ID dme-mir-210 standard; RNA; DME; 100 BP.
XX
AC MI0000376;
XX
DE Drosophila melanogaster miR-210 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-210; miR-210.
DR TARGETS:PICTAR-FLY; dme-miR-210; dme-miR-210.
XX
CC This sequence is computationally predicted based on conservation in D.
CC pseudoobscura. The precise 5' or 3' ends are unknown. Northern blotting
CC confirmed that the strand containing the predicted miR is predominantly
CC expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0020816"
FT /product="dme-miR-210-5p"
FT /evidence=not_experimental
FT miRNA 52..74
FT /accession="MIMAT0000355"
FT /product="dme-miR-210-3p"
FT /evidence=experimental
FT /experiment="cloned [2], 454 [3-4], Illumina [4]"
FT /similarity="MI0000376"
XX
SQ Sequence 100 BP; 28 A; 22 C; 27 G; 0 T; 23 other;
aaaggugcuu auugcagcug cuggccacug cacaagauua gacuuaagac ucuugugcgu 60
gugacagcgg cuauuguaag aggccauaga agcaacagcc 100
//
ID dme-mir-285 standard; RNA; DME; 99 BP.
XX
AC MI0000377;
XX
DE Drosophila melanogaster miR-285 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-285; miR-285.
DR TARGETS:PICTAR-FLY; dme-miR-285; dme-miR-285.
XX
CC miR-285 was reported independently in references [1] and [2].
CC Computational prediction followed by northern blotting confirmed that the
CC strand containing the predicted miR is predominantly expressed [1].
CC Reference [2] confirmed the ends of the excised miRNA by cloning.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0020817"
FT /product="dme-miR-285-5p"
FT /evidence=not_experimental
FT miRNA 64..85
FT /accession="MIMAT0000356"
FT /product="dme-miR-285-3p"
FT /evidence=experimental
FT /experiment="cloned [2], 454 [3], Illumina [4]"
FT /similarity="MI0000377"
XX
SQ Sequence 99 BP; 35 A; 20 C; 19 G; 0 T; 25 other;
ucgaaucgaa gaacugagau cgauuggugc auagauauca ggagaaccca cucaauuuaa 60
cucuagcacc auucgaaauc agugcuuuug auaagaaac 99
//
ID dme-mir-100 standard; RNA; DME; 100 BP.
XX
AC MI0000378;
XX
DE Drosophila melanogaster miR-100 stem-loop
XX
RN [1]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [2]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-100; miR-100.
DR TARGETS:PICTAR-FLY; dme-miR-100; dme-miR-100.
XX
CC miR-100 was reported independently by three groups using computational
CC prediction [2], Northern blot analysis [1] and cloning [3]. References
CC [1] and [2] confirmed that the strand containing the predicted miR is
CC predominantly expressed [1]. Reference [3] confirmed the ends of the
CC excised miRNA by cloning.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0000357"
FT /product="dme-miR-100-5p"
FT /evidence=experimental
FT /experiment="Northern [1,3], 454 [4-5], Illumina [5]"
FT /similarity="MI0000378"
FT miRNA 51..72
FT /accession="MIMAT0020818"
FT /product="dme-miR-100-3p"
FT /evidence=not_experimental
XX
SQ Sequence 100 BP; 29 A; 21 C; 20 G; 0 T; 30 other;
ccauuaacag aaacccguaa auccgaacuu gugcuguuuu auaucuguua caagaccggc 60
auuaugggag ucugucaaug caaacaacug guuuuuggca 100
//
ID dme-mir-92b standard; RNA; DME; 100 BP.
XX
AC MI0000379;
XX
DE Drosophila melanogaster miR-92b stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-92b; miR-92b.
DR TARGETS:PICTAR-FLY; dme-miR-92b; dme-miR-92b.
XX
CC miR-92b was reported independently in references [1] and [2].
CC Computational prediction followed by northern blotting confirmed that the
CC strand containing the predicted miR is predominantly expressed [1].
CC Reference [2] confirmed the ends of the excised miRNA by cloning.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0020819"
FT /product="dme-miR-92b-5p"
FT /evidence=not_experimental
FT miRNA 60..81
FT /accession="MIMAT0000358"
FT /product="dme-miR-92b-3p"
FT /evidence=experimental
FT /experiment="Northern [1,3], cloned [2], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000379"
XX
SQ Sequence 100 BP; 24 A; 25 C; 23 G; 0 T; 28 other;
uaaaacguca ccugauguag gccgugccca gugcuuauuu guugcauuuu cgaaauacaa 60
auugcacuag ucccggccug caaugagugu cgcagucgac 100
//
ID dme-mir-286 standard; RNA; DME; 100 BP.
XX
AC MI0000380;
XX
DE Drosophila melanogaster miR-286 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-286; miR-286.
DR TARGETS:PICTAR-FLY; dme-miR-286; dme-miR-286.
XX
CC miR-286 was reported independently in references [1] and [2].
CC Computational prediction followed by northern blotting confirmed that the
CC strand containing the predicted miR is predominantly expressed [1].
CC Reference [2] confirmed the 5' end of the excised miRNA by cloning and
CC reported a length distribution of 22-24 nt with 23 nt the most commonly
CC expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0020820"
FT /product="dme-miR-286-5p"
FT /evidence=not_experimental
FT miRNA 65..87
FT /accession="MIMAT0000359"
FT /product="dme-miR-286-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2], 454 [3-4], Illumina
FT [4]"
FT /similarity="MI0000380"
XX
SQ Sequence 100 BP; 33 A; 14 C; 21 G; 0 T; 32 other;
uuaaaauuga auggcgaaug ucgguauggu cucuuuuuca aagaaagguu ucgauuaagc 60
gaagugacua gaccgaacac ucgugcuaua auuuuaaaau 100
//
ID dme-mir-87 standard; RNA; DME; 99 BP.
XX
AC MI0000382;
XX
DE Drosophila melanogaster miR-87 stem-loop
XX
RN [1]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-87; miR-87.
DR TARGETS:PICTAR-FLY; dme-miR-87; dme-miR-87.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0020821"
FT /product="dme-miR-87-5p"
FT /evidence=not_experimental
FT miRNA 61..84
FT /accession="MIMAT0000361"
FT /product="dme-miR-87-3p"
FT /evidence=experimental
FT /experiment="Northern [1-2], 454 [4-5], Illumina [5]"
FT /similarity="MI0000382"
XX
SQ Sequence 99 BP; 25 A; 22 C; 23 G; 0 T; 29 other;
aacacauuuc auucgcgccu guaucuugcu gaaccgcugc cauuauggcc aacgauccgg 60
uugagcaaaa uuucaggugu gugagaaaug uguuuagca 99
//
ID dme-mir-263b standard; RNA; DME; 90 BP.
XX
AC MI0000383;
XX
DE Drosophila melanogaster miR-263b stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-263b; miR-263b.
DR TARGETS:PICTAR-FLY; dme-miR-263b; dme-miR-263b.
XX
CC miR-263b was reported independently in references [1] and [2].
CC Computational prediction followed by northern blotting confirmed that the
CC strand containing the predicted miR is predominantly expressed [1].
CC Reference [2] confirmed the ends of the excised miRNA by cloning.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0000362"
FT /product="dme-miR-263b-5p"
FT /evidence=experimental
FT /experiment="cloned [2], 454 [3-4], Illumina [4]"
FT /similarity="MI0000383"
FT miRNA 55..76
FT /accession="MIMAT0020822"
FT /product="dme-miR-263b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 90 BP; 20 A; 17 C; 22 G; 0 T; 31 other;
uugcugacuu ugagucuugg cacugggaga auucacaguu gacuuuauua uucugugguu 60
cugcgggugc caaaacuuaa aaaccggcuu 90
//
ID dme-bantam standard; RNA; DME; 81 BP.
XX
AC MI0000387;
XX
DE Drosophila melanogaster bantam stem-loop
XX
RN [1]
RX PUBMED; 12679032.
RA Brennecke J, Hipfner DR, Stark A, Russell RB, Cohen SM;
RT "bantam encodes a developmentally regulated microRNA that controls cell
RT proliferation and regulates the proapoptotic gene hid in Drosophila";
RL Cell. 113:25-36(2003).
XX
RN [2]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 12946623.
RA Moberg KH, Hariharan IK;
RT "Big things from a little RNA";
RL Trends Cell Biol. 13:455-457(2003).
XX
RN [5]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [6]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
CC bantam microRNA was predicted independently by two groups using
CC computational approaches [1,2]. Northern blotting confirmed that the
CC strand containing the predicted miR is predominantly expressed. Subsequent
CC cloning studies have independently identified the same miRNA and confirmed
CC the 5' end [3]. A length distribution of 20-23 nt was reported with a 23
CC nt sequence the most commonly expressed. bantam is reported to promote
CC tissue growth [1]. bantam expression is temporally and spatially
CC regulated in response to patterning cues. bantam microRNA simultaneously
CC stimulates cell proliferation and prevents apoptosis and is predicted to
CC target the pro-apoptotic gene hid [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0020823"
FT /product="dme-bantam-5p"
FT /evidence=not_experimental
FT miRNA 52..74
FT /accession="MIMAT0000365"
FT /product="dme-bantam-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [3], 454 [5-6], Illumina
FT [6]"
FT /similarity="MI0000387"
XX
SQ Sequence 81 BP; 21 A; 11 C; 16 G; 0 T; 33 other;
auuugacuac gaaaccgguu uucgauuugg uuugacuguu uuucauacaa gugagaucau 60
uuugaaagcu gauuuuguca a 81
//
ID mmu-mir-290a standard; RNA; MMU; 83 BP.
XX
AC MI0000388;
XX
DE Mus musculus miR-290a stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3711323; Mir290.
DR ENTREZGENE; 100049710; Mir290.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000366"
FT /product="mmu-miR-290a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3-4]"
FT miRNA 49..72
FT /accession="MIMAT0004572"
FT /product="mmu-miR-290a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 83 BP; 16 A; 20 C; 18 G; 0 T; 29 other;
cucaucuugc gguacucaaa cuaugggggc acuuuuuuuu uucuuuaaaa agugccgccu 60
aguuuuaagc cccgccgguu gag 83
//
ID mmu-mir-291a standard; RNA; MMU; 82 BP.
XX
AC MI0000389;
XX
DE Mus musculus miR-291a stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3711324; Mir291a.
DR ENTREZGENE; 100049715; Mir291a.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000367"
FT /product="mmu-miR-291a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 50..71
FT /accession="MIMAT0000368"
FT /product="mmu-miR-291a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3-4]"
XX
SQ Sequence 82 BP; 17 A; 21 C; 23 G; 0 T; 21 other;
ccuauguagc ggccaucaaa guggaggccc ucucuugagc cugaaugaga aagugcuucc 60
acuuugugug ccacugcaug gg 82
//
ID mmu-mir-292a standard; RNA; MMU; 82 BP.
XX
AC MI0000390;
XX
DE Mus musculus miR-292 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3711325; Mir292.
DR ENTREZGENE; 100049711; Mir292.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0000369"
FT /product="mmu-miR-292a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3-4]"
FT miRNA 50..73
FT /accession="MIMAT0000370"
FT /product="mmu-miR-292a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3-4]"
XX
SQ Sequence 82 BP; 17 A; 17 C; 24 G; 0 T; 24 other;
cagccuguga uacucaaacu gggggcucuu uuggauuuuc aucggaagaa aagugccgcc 60
agguuuugag ugucaccggu ug 82
//
ID mmu-mir-293 standard; RNA; MMU; 80 BP.
XX
AC MI0000391;
XX
DE Mus musculus miR-293 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3711326; Mir293.
DR ENTREZGENE; 100049714; Mir293.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0004573"
FT /product="mmu-miR-293-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 48..69
FT /accession="MIMAT0000371"
FT /product="mmu-miR-293-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3-4]"
XX
SQ Sequence 80 BP; 17 A; 12 C; 21 G; 0 T; 30 other;
uucaaucugu gguacucaaa cugugugaca uuuuguucuu uguaagaagu gccgcagagu 60
uuguaguguu gccgauugag 80
//
ID mmu-mir-294 standard; RNA; MMU; 84 BP.
XX
AC MI0000392;
XX
DE Mus musculus miR-294 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3711327; Mir294.
DR ENTREZGENE; 100049712; Mir294.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0004574"
FT /product="mmu-miR-294-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 51..72
FT /accession="MIMAT0000372"
FT /product="mmu-miR-294-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3-4]"
XX
SQ Sequence 84 BP; 20 A; 17 C; 19 G; 0 T; 28 other;
uuccauauag ccauacucaa aauggaggcc cuaucuaagc uuuuaagugg aaagugcuuc 60
ccuuuugugu guugccaugu ggag 84
//
ID mmu-mir-295 standard; RNA; MMU; 69 BP.
XX
AC MI0000393;
XX
DE Mus musculus miR-295 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3711328; Mir295.
DR ENTREZGENE; 100049713; Mir295.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0004575"
FT /product="mmu-miR-295-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 43..65
FT /accession="MIMAT0000373"
FT /product="mmu-miR-295-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3-4]"
XX
SQ Sequence 69 BP; 17 A; 15 C; 17 G; 0 T; 20 other;
ggugagacuc aaaugugggg cacacuucug gacuguacau agaaagugcu acuacuuuug 60
agucucucc 69
//
ID mmu-mir-296 standard; RNA; MMU; 79 BP.
XX
AC MI0000394;
XX
DE Mus musculus miR-296 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619269; Mir296.
DR ENTREZGENE; 723906; Mir296.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0000374"
FT /product="mmu-miR-296-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3-4]"
FT miRNA 47..68
FT /accession="MIMAT0004576"
FT /product="mmu-miR-296-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 79 BP; 8 A; 23 C; 27 G; 0 T; 21 other;
gggccuuucu ggagggcccc cccucaaucc uguugugcuc gcuucagagg guugggugga 60
ggcucuccug aaggugucc 79
//
ID mmu-mir-298 standard; RNA; MMU; 82 BP.
XX
AC MI0000398;
XX
DE Mus musculus miR-298 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619321; Mir298.
DR ENTREZGENE; 723832; Mir298.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0000376"
FT /product="mmu-miR-298-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 51..74
FT /accession="MIMAT0017007"
FT /product="mmu-miR-298-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 82 BP; 14 A; 18 C; 26 G; 0 T; 24 other;
ccaggccuuu ggcagaggag ggcuguucuu cccuugaguu uuaugacugg gaggaacuag 60
ccuucucuca gcuuaggagu gg 82
//
ID mmu-mir-299a standard; RNA; MMU; 63 BP.
XX
AC MI0000399;
XX
DE Mus musculus miR-299 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619322; Mir299.
DR ENTREZGENE; 723927; Mir299.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000377"
FT /product="mmu-miR-299a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 39..60
FT /accession="MIMAT0004577"
FT /product="mmu-miR-299a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 63 BP; 17 A; 12 C; 14 G; 0 T; 20 other;
aagaaauggu uuaccguccc acauacauuu ugaguaugua ugugggacgg uaaaccgcuu 60
cuu 63
//
ID mmu-mir-300 standard; RNA; MMU; 79 BP.
XX
AC MI0000400;
XX
DE Mus musculus miR-300 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619323; Mir300.
DR ENTREZGENE; 723833; Mir300.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0004578"
FT /product="mmu-miR-300-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 51..72
FT /accession="MIMAT0000378"
FT /product="mmu-miR-300-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 79 BP; 19 A; 14 C; 22 G; 0 T; 24 other;
gcuacuugaa gagagguuau ccuuugugug uuugcuuuac gcgaaaugaa uaugcaaggg 60
caagcucucu ucgaggagc 79
//
ID mmu-mir-301a standard; RNA; MMU; 86 BP.
XX
AC MI0000401;
XX
DE Mus musculus miR-301a stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619324; Mirn301.
DR ENTREZGENE; 723834; Mir301.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0017008"
FT /product="mmu-miR-301a-5p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
FT miRNA 51..73
FT /accession="MIMAT0000379"
FT /product="mmu-miR-301a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], Illumina [4,6]"
XX
SQ Sequence 86 BP; 21 A; 22 C; 20 G; 0 T; 23 other;
ccugcuaacg gcugcucuga cuuuauugca cuacuguacu uuacagcgag cagugcaaua 60
guauugucaa agcauccgcg agcagg 86
//
ID mmu-mir-302a standard; RNA; MMU; 69 BP.
XX
AC MI0000402;
XX
DE Mus musculus miR-302a stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619325; Mir302a.
DR ENTREZGENE; 723920; Mir302a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0004579"
FT /product="mmu-miR-302a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 44..66
FT /accession="MIMAT0000380"
FT /product="mmu-miR-302a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3-4]"
XX
SQ Sequence 69 BP; 17 A; 13 C; 16 G; 0 T; 23 other;
ccaccacuua aacgugguug uacuugcuuu agaccuaaga aaguaagugc uuccauguuu 60
uggugaugg 69
//
ID mmu-mir-34c standard; RNA; MMU; 77 BP.
XX
AC MI0000403;
XX
DE Mus musculus miR-34c stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619365; Mir34c.
DR ENTREZGENE; 723932; Mir34c.
XX
CC Houbaviy et al. cloned 3 closely related sequences from mouse embryonic
CC stem cells [1], and named them miR-34a, miR-34b and miR-172. These names
CC have been remapped to miR-34c (MIR:MI0000403), miR-34b (MIR:MI0000404) and
CC miR-34a (MIR:MI0000584) to clarify homology with human sequences.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0000381"
FT /product="mmu-miR-34c-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 46..67
FT /accession="MIMAT0004580"
FT /product="mmu-miR-34c-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 77 BP; 27 A; 16 C; 15 G; 0 T; 19 other;
agucuaguua cuaggcagug uaguuagcug auugcuaaua guaccaauca cuaaccacac 60
agccagguaa aaagacu 77
//
ID mmu-mir-34b standard; RNA; MMU; 84 BP.
XX
AC MI0000404;
XX
DE Mus musculus miR-34b stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619364; Mir34b.
DR ENTREZGENE; 723849; Mir34b.
XX
CC Houbaviy et al. cloned 3 closely related sequences from mouse embryonic
CC stem cells [1], and named them miR-34a, miR-34b and miR-172. These names
CC have been remapped to miR-34c (MIR:MI0000403), miR-34b (MIR:MI0000404) and
CC miR-34a (MIR:MI0000584) to clarify homology with human sequences. The
CC mature sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [2]. The 5' end of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0000382"
FT /product="mmu-miR-34b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 51..72
FT /accession="MIMAT0004581"
FT /product="mmu-miR-34b-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 84 BP; 22 A; 19 C; 21 G; 0 T; 22 other;
gugcucgguu uguaggcagu guaauuagcu gauuguagug cggugcugac aaucacuaac 60
uccacugcca ucaaaacaag gcac 84
//
ID mmu-let-7d standard; RNA; MMU; 103 BP.
XX
AC MI0000405;
XX
DE Mus musculus let-7d stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676796; Mirlet7d.
DR ENTREZGENE; 387247; Mirlet7d.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000383"
FT /product="mmu-let-7d-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Illumina [6-7]"
FT miRNA 70..91
FT /accession="MIMAT0000384"
FT /product="mmu-let-7d-3p"
FT /evidence=experimental
FT /experiment="cloned [2,5], Illumina [6-7]"
XX
SQ Sequence 103 BP; 25 A; 18 C; 28 G; 0 T; 32 other;
aauggguucc uaggaagagg uaguagguug cauaguuuua gggcagagau uuugcccaca 60
aggaguuaac uauacgaccu gcugccuuuc uuagggccuu auu 103
//
ID mmu-mir-106a standard; RNA; MMU; 65 BP.
XX
AC MI0000406;
XX
DE Mus musculus miR-106a stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619120; Mir106a.
DR ENTREZGENE; 723829; Mir106a.
XX
CC Mouse and human miR-106a (MIR:MI0000406 and MIR:MI0000113) differ at two
CC positions but the precursor sequences are clearly closely related. The
CC sequences are also related to mir-17 (MIR:MI0000071 and MIR:MI0000687).
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..27
FT /accession="MIMAT0000385"
FT /product="mmu-miR-106a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 41..63
FT /accession="MIMAT0017009"
FT /product="mmu-miR-106a-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 65 BP; 16 A; 14 C; 14 G; 0 T; 21 other;
augucaaagu gcuaacagug cagguagcuu uuugaguucu acugcagugc cagcacuucu 60
uacau 65
//
ID mmu-mir-106b standard; RNA; MMU; 82 BP.
XX
AC MI0000407;
XX
DE Mus musculus miR-106b stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619060; Mir106b.
DR ENTREZGENE; 723925; Mir106b.
XX
CC Reference [1] reported the same miRNA sequence with two different
CC identifiers - miR-106b and miR-94.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0000386"
FT /product="mmu-miR-106b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 52..73
FT /accession="MIMAT0004582"
FT /product="mmu-miR-106b-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 82 BP; 14 A; 22 C; 25 G; 0 T; 21 other;
ccugcuggga cuaaagugcu gacagugcag auaguggucc ucucugugcu accgcacugu 60
ggguacuugc ugcuccagca gg 82
//
ID mmu-mir-130b standard; RNA; MMU; 82 BP.
XX
AC MI0000408;
XX
DE Mus musculus miR-130b stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618716; Mir130b.
DR ENTREZGENE; 723816; Mir130b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0004583"
FT /product="mmu-miR-130b-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT miRNA 51..72
FT /accession="MIMAT0000387"
FT /product="mmu-miR-130b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], Illumina [4-5]"
XX
SQ Sequence 82 BP; 14 A; 20 C; 26 G; 0 T; 22 other;
ggcuuguugg acacucuuuc ccuguugcac uacugugggc cucugggaag cagugcaaug 60
augaaagggc aucugucggg cc 82
//
ID dme-mir-303 standard; RNA; DME; 70 BP.
XX
AC MI0000409;
XX
DE Drosophila melanogaster miR-303 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-303; miR-303.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0000388"
FT /product="dme-miR-303-5p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000409"
FT miRNA 43..64
FT /accession="MIMAT0020824"
FT /product="dme-miR-303-3p"
FT /evidence=not_experimental
XX
SQ Sequence 70 BP; 24 A; 12 C; 11 G; 0 T; 23 other;
ucuugguuua gguuucacag gaaacugguu uaauaacgaa aacuaguuuc cucuaaaauc 60
cuaaucaaga 70
//
ID dme-mir-31b standard; RNA; DME; 127 BP.
XX
AC MI0000410;
XX
DE Drosophila melanogaster miR-31b stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-31b; miR-31b.
DR TARGETS:PICTAR-FLY; dme-miR-31b; dme-miR-31b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000389"
FT /product="dme-miR-31b-5p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000410"
FT miRNA 94..115
FT /accession="MIMAT0020825"
FT /product="dme-miR-31b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 127 BP; 41 A; 21 C; 27 G; 0 T; 38 other;
caaauaauga auuuggcaag augucggaau agcugagagc acagcggauc gaacauuuua 60
ucguccgaaa aaaugugauu auuuuugaaa agcggcuaug ccucaucuag ucaauugcau 120
uacuuug 127
//
ID dme-mir-304 standard; RNA; DME; 88 BP.
XX
AC MI0000411;
XX
DE Drosophila melanogaster miR-304 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-304; miR-304.
DR TARGETS:PICTAR-FLY; dme-miR-304; dme-miR-304.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..34
FT /accession="MIMAT0000390"
FT /product="dme-miR-304-5p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000411"
FT miRNA 58..79
FT /accession="MIMAT0020826"
FT /product="dme-miR-304-3p"
FT /evidence=not_experimental
XX
SQ Sequence 88 BP; 24 A; 17 C; 20 G; 0 T; 27 other;
gcagcauuga auaaucucaa uuuguaaaug ugagcgguuu aagccauuug acgcacucac 60
uuugcaauug gagauugcuc gagacugc 88
//
ID dme-mir-305 standard; RNA; DME; 73 BP.
XX
AC MI0000412;
XX
DE Drosophila melanogaster miR-305 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-305; miR-305.
DR TARGETS:PICTAR-FLY; dme-miR-305; dme-miR-305.
XX
CC Lai et al. predicted this sequence based on conservation in D.
CC pseudoobscura, but did not verify expression [2]. Aravin et al. describe
CC identification and mapping of the 5' end of the excised sequence by
CC cloning [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0000391"
FT /product="dme-miR-305-5p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [3-4], Illumina [4]"
FT /similarity="MI0000412"
FT miRNA 46..68
FT /accession="MIMAT0020827"
FT /product="dme-miR-305-3p"
FT /evidence=not_experimental
XX
SQ Sequence 73 BP; 16 A; 17 C; 16 G; 0 T; 24 other;
caugucuauu guacuucauc aggugcucug gugugucucg uaacccggca cauguugaag 60
uacacucaau aug 73
//
ID dme-mir-9c standard; RNA; DME; 92 BP.
XX
AC MI0000413;
XX
DE Drosophila melanogaster miR-9c stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-9c; miR-9c.
DR TARGETS:PICTAR-FLY; dme-miR-9c; dme-miR-9c.
XX
CC Lai et al. predicted this sequence based on conservation in D.
CC pseudoobscura, but did not verify expression [2]. Aravin et al. describe
CC identification and mapping of the ends of the excised sequence by cloning
CC [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0000392"
FT /product="dme-miR-9c-5p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [3-4], Illumina [4]"
FT /similarity="MI0000413"
FT miRNA 61..82
FT /accession="MIMAT0020828"
FT /product="dme-miR-9c-3p"
FT /evidence=not_experimental
XX
SQ Sequence 92 BP; 23 A; 17 C; 13 G; 0 T; 39 other;
auuuuugcug uuucuuuggu auucuagcug uagauuguuu cacgcacauu guauaucauc 60
uaaagcuuuu auaccaaagc uccagcuuaa au 92
//
ID dme-mir-306 standard; RNA; DME; 85 BP.
XX
AC MI0000414;
XX
DE Drosophila melanogaster miR-306 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-306; miR-306.
DR TARGETS:MIRTE; miR-306S; miR-306S.
DR TARGETS:PICTAR-FLY; dme-miR-306; dme-miR-306.
XX
CC miR-306 was identified and ends mapped by cloning. Reference [1] also
CC identified a less predominantly expressed miR from the opposite arm of the
CC precursor, designated miR-306* here
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000393"
FT /product="dme-miR-306-5p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000414"
FT miRNA 52..73
FT /accession="MIMAT0000394"
FT /product="dme-miR-306-3p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000414"
XX
SQ Sequence 85 BP; 13 A; 21 C; 24 G; 0 T; 27 other;
guccacucga uggcucaggu acuuagugac ucucaaugcu uuugacauuu ugggggucac 60
ucugugccug ugcugccagu gggac 85
//
ID dme-mir-9b standard; RNA; DME; 91 BP.
XX
AC MI0000415;
XX
DE Drosophila melanogaster miR-9b stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-9b; miR-9b.
DR TARGETS:PICTAR-FLY; dme-miR-9b; dme-miR-9b.
XX
CC Lai et al. predicted this sequence based on conservation in D.
CC pseudoobscura, but did not verify expression [2]. Aravin et al. describe
CC identification and mapping of the 5' end of the excised sequence by
CC cloning [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0000395"
FT /product="dme-miR-9b-5p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [3-4], Illumina [4]"
FT /similarity="MI0000415"
FT miRNA 56..77
FT /accession="MIMAT0020829"
FT /product="dme-miR-9b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 91 BP; 23 A; 13 C; 16 G; 0 T; 39 other;
ugcauauuau uugcucuuug gugauuuuag cuguauggug uuuauguaua uuccauagag 60
cuuuauuacc aaaaaccaaa ugguuucugc a 91
//
ID dme-let-7 standard; RNA; DME; 78 BP.
XX
AC MI0000416;
XX
DE Drosophila melanogaster let-7 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [3]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; let-7; let-7.
DR TARGETS:PICTAR-FLY; dme-let-7; dme-let-7.
DR ENTREZGENE; 3772493; let-7.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0000396"
FT /product="dme-let-7-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1-3], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000416"
FT miRNA 49..70
FT /accession="MIMAT0020830"
FT /product="dme-let-7-3p"
FT /evidence=not_experimental
XX
SQ Sequence 78 BP; 22 A; 11 C; 16 G; 0 T; 29 other;
ucuggcaaau ugagguagua gguuguauag uaguaauuac acaucauacu auacaaugug 60
cuagcuuucu uugcuuga 78
//
ID dme-mir-125 standard; RNA; DME; 110 BP.
XX
AC MI0000417;
XX
DE Drosophila melanogaster miR-125 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-125; miR-125.
DR TARGETS:PICTAR-FLY; dme-miR-125; dme-miR-125.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..50
FT /accession="MIMAT0000397"
FT /product="dme-miR-125-5p"
FT /evidence=experimental
FT /experiment="Northern [1-2], 454 [3-4], Illumina [4]"
FT /similarity="MI0000417"
FT miRNA 68..88
FT /accession="MIMAT0020831"
FT /product="dme-miR-125-3p"
FT /evidence=not_experimental
XX
SQ Sequence 110 BP; 26 A; 22 C; 23 G; 0 T; 39 other;
gacaugugca aauguuugua uggcugauuc ccugagaccc uaacuuguga cuuuuaauac 60
caguuucaca aguuuugauc uccgguauug gacgcaaacu ugcugauguu 110
//
ID dme-mir-307a standard; RNA; DME; 88 BP.
XX
AC MI0000418;
XX
DE Drosophila melanogaster miR-307a stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-307; miR-307.
DR TARGETS:PICTAR-FLY; dme-miR-307; dme-miR-307.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0020832"
FT /product="dme-miR-307a-5p"
FT /evidence=not_experimental
FT miRNA 56..78
FT /accession="MIMAT0000398"
FT /product="dme-miR-307a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000418"
XX
SQ Sequence 88 BP; 20 A; 20 C; 20 G; 0 T; 28 other;
ugucuugcuu ugacucacuc aaccugggug ugauguuauu ucgauauggu auccaucaca 60
accuccuuga gugagcgaua gcaggaca 88
//
ID dme-mir-308 standard; RNA; DME; 63 BP.
XX
AC MI0000419;
XX
DE Drosophila melanogaster miR-308 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-308; miR-308.
DR TARGETS:PICTAR-FLY; dme-miR-308; dme-miR-308.
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..24
FT /accession="MIMAT0020833"
FT /product="dme-miR-308-5p"
FT /evidence=not_experimental
FT miRNA 42..63
FT /accession="MIMAT0000399"
FT /product="dme-miR-308-3p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000419"
XX
SQ Sequence 63 BP; 14 A; 10 C; 12 G; 0 T; 27 other;
cucgcaguau auuuuugugu uuuguuucgu uuugcaaucc aaaucacagg auuauacugu 60
gag 63
//
ID dme-mir-31a standard; RNA; DME; 92 BP.
XX
AC MI0000420;
XX
DE Drosophila melanogaster miR-31a stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-31a; miR-31a.
DR TARGETS:PICTAR-FLY; dme-miR-31a; dme-miR-31a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0000400"
FT /product="dme-miR-31a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000420"
FT miRNA 60..81
FT /accession="MIMAT0020834"
FT /product="dme-miR-31a-3p"
FT /evidence=not_experimental
XX
SQ Sequence 92 BP; 24 A; 15 C; 26 G; 0 T; 27 other;
uccguuggua aauuggcaag augucggcau agcugacguu gaaaagcgau uuugaagagc 60
gcuaugcugc aucuagucag uuguucaaug ga 92
//
ID dme-mir-309 standard; RNA; DME; 69 BP.
XX
AC MI0000421;
XX
DE Drosophila melanogaster miR-309 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-309; miR-309.
DR TARGETS:PICTAR-FLY; dme-miR-309; dme-miR-309.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0020835"
FT /product="dme-miR-309-5p"
FT /evidence=not_experimental
FT miRNA 44..65
FT /accession="MIMAT0000401"
FT /product="dme-miR-309-3p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000421"
XX
SQ Sequence 69 BP; 19 A; 15 C; 12 G; 0 T; 23 other;
auuauacgac aaaccuuguu cgguuuugcc aauuuccaag ccagcacugg guaaaguuug 60
uccuauaau 69
//
ID dme-mir-310 standard; RNA; DME; 89 BP.
XX
AC MI0000422;
XX
DE Drosophila melanogaster miR-310 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-310; miR-310.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0020836"
FT /product="dme-miR-310-5p"
FT /evidence=not_experimental
FT miRNA 54..75
FT /accession="MIMAT0000402"
FT /product="dme-miR-310-3p"
FT /evidence=experimental
FT /experiment="Northern [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000422"
XX
SQ Sequence 89 BP; 22 A; 18 C; 18 G; 0 T; 31 other;
aacauaaaca uuugcagggc gggucgugug ucaguguauu uauaucuuag cuauauugca 60
cacuucccgg ccuuuaaaug uccaauguu 89
//
ID dme-mir-311 standard; RNA; DME; 84 BP.
XX
AC MI0000423;
XX
DE Drosophila melanogaster miR-311 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-311; miR-311.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0020837"
FT /product="dme-miR-311-5p"
FT /evidence=not_experimental
FT miRNA 52..73
FT /accession="MIMAT0000403"
FT /product="dme-miR-311-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], 454 [2-3], Illumina
FT [3]"
FT /similarity="MI0000423"
XX
SQ Sequence 84 BP; 25 A; 14 C; 15 G; 0 T; 30 other;
ucuagaucau uuuucggacg guauaugggu uaauauuuca uuugucgaau auauugcaca 60
uucaccggcc ugaaaauauc aaga 84
//
ID dme-mir-312 standard; RNA; DME; 66 BP.
XX
AC MI0000424;
XX
DE Drosophila melanogaster miR-312 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-312; miR-312.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..27
FT /accession="MIMAT0020838"
FT /product="dme-miR-312-5p"
FT /evidence=not_experimental
FT miRNA 43..64
FT /accession="MIMAT0000404"
FT /product="dme-miR-312-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], 454 [2-3], Illumina
FT [3]"
FT /similarity="MI0000424"
XX
SQ Sequence 66 BP; 15 A; 12 C; 15 G; 0 T; 24 other;
gauuugguuc gucacaaggg caauucugca uuuuuuaacu aguauugcac uugagacggc 60
cugauu 66
//
ID dme-mir-313 standard; RNA; DME; 71 BP.
XX
AC MI0000425;
XX
DE Drosophila melanogaster miR-313 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-313; miR-313.
XX
CC miR-313 was predicted based on conservation of clustering with miR-310
CC (MIR:MI0000422), miR-311 (MIR:MI0000423) and miR-312 (MIR:MI0000424). Its
CC expression has not been verified.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0020839"
FT /product="dme-miR-313-5p"
FT /evidence=not_experimental
FT miRNA 46..67
FT /accession="MIMAT0000405"
FT /product="dme-miR-313-3p"
FT /evidence=experimental
FT /experiment="454 [2-3], Illumina [3]"
FT /similarity="MI0000425"
XX
SQ Sequence 71 BP; 16 A; 13 C; 16 G; 0 T; 26 other;
auuuucugcu gcggaugggg gcaguacugu uuuuuuaaca uugaguauug cacuuuucac 60
agcccgaaaa u 71
//
ID dme-mir-314 standard; RNA; DME; 90 BP.
XX
AC MI0000426;
XX
DE Drosophila melanogaster miR-314 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-314; miR-314.
DR TARGETS:PICTAR-FLY; dme-miR-314; dme-miR-314.
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..28
FT /accession="MIMAT0020840"
FT /product="dme-miR-314-5p"
FT /evidence=not_experimental
FT miRNA 70..90
FT /accession="MIMAT0000406"
FT /product="dme-miR-314-3p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000426"
XX
SQ Sequence 90 BP; 20 A; 19 C; 21 G; 0 T; 30 other;
ucguaacuug uguggcuucg aacuuaccua guugaggaaa acucccaugu cggauuuugu 60
uaccucuggu auucgagcca auaaguucgg 90
//
ID dme-mir-315 standard; RNA; DME; 84 BP.
XX
AC MI0000427;
XX
DE Drosophila melanogaster miR-315 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-315; miR-315.
DR TARGETS:PICTAR-FLY; dme-miR-315; dme-miR-315.
XX
CC Lai et al. predicted this sequence based on conservation in D.
CC pseudoobscura, but did not verify expression [2]. Aravin et al. describe
CC identification and mapping of the ends of the excised sequence by cloning
CC [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0000407"
FT /product="dme-miR-315-5p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [3-4], Illumina [4]"
FT /similarity="MI0000427"
FT miRNA 54..75
FT /accession="MIMAT0020841"
FT /product="dme-miR-315-3p"
FT /evidence=not_experimental
XX
SQ Sequence 84 BP; 25 A; 15 C; 15 G; 0 T; 29 other;
cacuuauaua auuuugauug uugcucagaa agcccucauu guuuaccagu uggcuuucga 60
gcaauaauug aaaccagaua agug 84
//
ID dme-mir-316 standard; RNA; DME; 89 BP.
XX
AC MI0000428;
XX
DE Drosophila melanogaster miR-316 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-316; miR-316.
DR TARGETS:PICTAR-FLY; dme-miR-316; dme-miR-316.
XX
CC Lai et al. predicted this sequence based on conservation in D.
CC pseudoobscura, but did not verify expression [2]. Aravin et al. describe
CC identification and mapping of the 5' end of the excised sequence by
CC cloning [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000408"
FT /product="dme-miR-316-5p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [3-4], Illumina [4]"
FT /similarity="MI0000428"
FT miRNA 54..75
FT /accession="MIMAT0020842"
FT /product="dme-miR-316-3p"
FT /evidence=not_experimental
XX
SQ Sequence 89 BP; 25 A; 16 C; 18 G; 0 T; 30 other;
aaauucuagu cgauuugucu uuuuccgcuu acuggcguuu caauuccaca acgacaggaa 60
agggaaaaag gcguauuuac uaugaguuu 89
//
ID dme-mir-317 standard; RNA; DME; 92 BP.
XX
AC MI0000429;
XX
DE Drosophila melanogaster miR-317 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-317; miR-317.
DR TARGETS:PICTAR-FLY; dme-miR-317; dme-miR-317.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0020843"
FT /product="dme-miR-317-5p"
FT /evidence=not_experimental
FT miRNA 56..79
FT /accession="MIMAT0000409"
FT /product="dme-miR-317-3p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000429"
XX
SQ Sequence 92 BP; 23 A; 21 C; 25 G; 0 T; 23 other;
augcaacugc cauugggaua cacccugugc ucgcuuugaa ugaaaugcaa gcaagugaac 60
acagcuggug guauccagug gccguuuggc au 92
//
ID dme-mir-318 standard; RNA; DME; 68 BP.
XX
AC MI0000430;
XX
DE Drosophila melanogaster miR-318 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-318; miR-318.
DR TARGETS:PICTAR-FLY; dme-miR-318; dme-miR-318.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0020844"
FT /product="dme-miR-318-5p"
FT /evidence=not_experimental
FT miRNA 43..64
FT /accession="MIMAT0000410"
FT /product="dme-miR-318-3p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000430"
XX
SQ Sequence 68 BP; 16 A; 14 C; 13 G; 0 T; 25 other;
uuuaugggau acacacaguu caguuuuguc acacuucaag caucacuggg cuuuguuuau 60
cucaugag 68
//
ID dme-mir-2c standard; RNA; DME; 102 BP.
XX
AC MI0000431;
XX
DE Drosophila melanogaster miR-2c stem-loop
XX
RN [1]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 14691535.
RA Stark A, Brennecke J, Russell RB, Cohen SM;
RT "Identification of Drosophila MicroRNA targets";
RL PLoS Biol. 1:E60(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-2c; miR-2c.
DR TARGETS:PICTAR-FLY; dme-miR-2c; dme-miR-2c.
XX
CC miR-2c was predicted by similarity to miR-2a (MIR:MI0000117). Expression
CC in Drosophila was independently confirmed by Northern blot analysis [1]
CC and by cloning [2]. The latter study confirmed the ends of the excised
CC miR. Stark et al. [3] have identified targets for miR-2 in Drosophila
CC using computational prediction followed by experimental validation. miR-2
CC regulates the proapoptotic genes reaper, grim and sickle, suggesting that
CC it may be involved in the control of apoptosis.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..44
FT /accession="MIMAT0020845"
FT /product="dme-miR-2c-5p"
FT /evidence=not_experimental
FT miRNA 63..85
FT /accession="MIMAT0000411"
FT /product="dme-miR-2c-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2], 454 [4-5], Illumina
FT [5]"
FT /similarity="MI0000431"
XX
SQ Sequence 102 BP; 31 A; 19 C; 22 G; 0 T; 30 other;
ucguaucuua cuuucaaugu caucaaaaag ggcugaagaa agauauuucu gcauuugaau 60
cguaucacag ccagcuuuga ugggcauugc aaugagcagc ga 102
//
ID dme-mir-iab-4 standard; RNA; DME; 68 BP.
XX
AC MI0000432;
XX
DE Drosophila melanogaster miR-iab-4 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 11504843.
RA Mattick JS, Gagen MJ;
RT "The evolution of controlled multitasked gene networks: the role of
RT introns and other noncoding RNAs in the development of complex organisms";
RL Mol Biol Evol. 18:1611-1630(2001).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-iab-4-3p; miR-iab-4-3p.
DR TARGETS:MIRTE; miR-iab-4-5p; miR-iab-4-5p.
DR TARGETS:PICTAR-FLY; dme-miR-iab-4-3p; dme-miR-iab-4-3p.
DR TARGETS:PICTAR-FLY; dme-miR-iab-4-5p; dme-miR-iab-4-5p.
XX
CC iab-4 is a transcript of the Bithorax complex which has been previously
CC shown to contribute to proper formation of abdominal segments [2].
CC Reference [1] identified a miRNA gene within the transcript and mapped the
CC ends of the mature miR sequence by cloning. Excised miR sequences were
CC identified from both arms of the precursor and are named miR-iab-4-5p (5')
CC and miR-iab-4-3p (3') as too few sequences were cloned to decide on which
CC was predominantly expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000412"
FT /product="dme-miR-iab-4-5p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [3-4], Illumina [4]"
FT /similarity="MI0000432"
FT miRNA 41..64
FT /accession="MIMAT0000413"
FT /product="dme-miR-iab-4-3p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [3-4], Illumina [4]"
FT /similarity="MI0000432"
XX
SQ Sequence 68 BP; 20 A; 15 C; 12 G; 0 T; 21 other;
ucguaaacgu auacugaaug uauccugagu guauccuauc cgguauaccu ucaguauacg 60
uaacacga 68
//
ID hsa-let-7g standard; RNA; HSA; 84 BP.
XX
AC MI0000433;
XX
DE Homo sapiens let-7g stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [4]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-let-7g; hsa-let-7g.
DR HGNC; 31485; MIRLET7G.
DR ENTREZGENE; 406890; MIRLET7G.
XX
CC let-7g-3p cloned in [2] has a 1 nt 3' extension (U), which is incompatible
CC with the genome sequence.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0000414"
FT /product="hsa-let-7g-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [4]"
FT /similarity="MI0000137"
FT miRNA 62..82
FT /accession="MIMAT0004584"
FT /product="hsa-let-7g-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 84 BP; 21 A; 18 C; 24 G; 0 T; 21 other;
aggcugaggu aguaguuugu acaguuugag ggucuaugau accacccggu acaggagaua 60
acuguacagg ccacugccuu gcca 84
//
ID hsa-let-7i standard; RNA; HSA; 84 BP.
XX
AC MI0000434;
XX
DE Homo sapiens let-7i stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [4]
RX PUBMED; 17989717.
RA Marton S, Garcia MR, Robello C, Persson H, Trajtenberg F, Pritsch O,
RA Rovira C, Naya H, Dighiero G, Cayota A;
RT "Small RNAs analysis in CLL reveals a deregulation of miRNA expression and
RT novel miRNA candidates of putative relevance in CLL pathogenesis";
RL Leukemia. 22:330-338(2008).
XX
RN [5]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-let-7i; hsa-let-7i.
DR HGNC; 31486; MIRLET7I.
DR ENTREZGENE; 406891; MIRLET7I.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000415"
FT /product="hsa-let-7i-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [5]"
FT /similarity="MI0000138"
FT miRNA 62..83
FT /accession="MIMAT0004585"
FT /product="hsa-let-7i-3p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
XX
SQ Sequence 84 BP; 13 A; 17 C; 28 G; 0 T; 26 other;
cuggcugagg uaguaguuug ugcuguuggu cggguuguga cauugcccgc uguggagaua 60
acugcgcaag cuacugccuu gcua 84
//
ID hsa-mir-1-2 standard; RNA; HSA; 85 BP.
XX
AC MI0000437;
XX
DE Homo sapiens miR-1-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR RFAM; RF00103; mir-1.
DR TARGETS:PICTAR-VERT; hsa-miR-1; hsa-miR-1.
DR HGNC; 31500; MIR1-2.
DR ENTREZGENE; 406905; MIR1-2.
XX
CC Lagos-Quintana et al. [1] reported the cloning of miR-1b, miR-1c and
CC miR-1d. The mature processed miR sequences are identical apart from the
CC 3' residues (A in mir-1b, C in mir-1c and UU in mir-1d). The 3' residues
CC of both miR-1b and miR-1c conflict with the predicted stem-loop precursor
CC sequence shown here and these sequences are not found in current
CC assemblies of human and mouse genomes. It is suggested that polyA
CC polymerase may add 1-3 nts to the 3' end of the mature transcript (Tom
CC Tuschl, pers. comm.). The common 21 nts of the 3 reported miR sequences
CC have been rationalised here and named miR-1. There are 2 pairs of
CC orthologous putative hairpin precursor structures named mir-1-1 (human
CC MIR:MI0000651, mouse MIR:MI0000139), and mir-1-2 (human MIR:MI0000437,
CC mouse MIR:MI0000652). The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0000416"
FT /product="hsa-miR-1-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000652"
XX
SQ Sequence 85 BP; 28 A; 14 C; 15 G; 0 T; 28 other;
accuacucag aguacauacu ucuuuaugua cccauaugaa cauacaaugc uauggaaugu 60
aaagaaguau guauuuuugg uaggc 85
//
ID hsa-mir-15b standard; RNA; HSA; 98 BP.
XX
AC MI0000438;
XX
DE Homo sapiens miR-15b stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-15b; hsa-miR-15b.
DR HGNC; 31544; MIR15B.
DR ENTREZGENE; 406949; MIR15B.
XX
CC This miRNA sequence was predicted based on homology to a verified miRNA
CC from mouse [1]. Michael et al. subsequently verified expression of
CC miR-15b in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0000417"
FT /product="hsa-miR-15b-5p"
FT /evidence=experimental
FT /experiment="cloned [2-5]"
FT miRNA 58..79
FT /accession="MIMAT0004586"
FT /product="hsa-miR-15b-3p"
FT /evidence=experimental
FT /experiment="cloned [4-5]"
XX
SQ Sequence 98 BP; 31 A; 17 C; 19 G; 0 T; 31 other;
uugaggccuu aaaguacugu agcagcacau caugguuuac augcuacagu caagaugcga 60
aucauuauuu gcugcucuag aaauuuaagg aaauucau 98
//
ID hsa-mir-27b standard; RNA; HSA; 97 BP.
XX
AC MI0000440;
XX
DE Homo sapiens miR-27b stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-27b; hsa-miR-27b.
DR HGNC; 31614; MIR27B.
DR ENTREZGENE; 407019; MIR27B.
XX
CC Lagos-Quintana et al. determined the expression of miR-27b in mouse [1] -
CC a human sequence was predicted based on homology. Michael et al.
CC subsequently verified the expression of this miRNA in human cells [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0004588"
FT /product="hsa-miR-27b-5p"
FT /evidence=experimental
FT /experiment="cloned [4-5]"
FT miRNA 61..81
FT /accession="MIMAT0000419"
FT /product="hsa-miR-27b-3p"
FT /evidence=experimental
FT /experiment="cloned [2-5]"
XX
SQ Sequence 97 BP; 23 A; 19 C; 27 G; 0 T; 28 other;
accucucuaa caaggugcag agcuuagcug auuggugaac agugauuggu uuccgcuuug 60
uucacagugg cuaaguucug caccugaaga gaaggug 97
//
ID hsa-mir-30b standard; RNA; HSA; 88 BP.
XX
AC MI0000441;
XX
DE Homo sapiens miR-30b stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-30b; hsa-miR-30b.
DR HGNC; 31625; MIR30B.
DR ENTREZGENE; 407030; MIR30B.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000420"
FT /product="hsa-miR-30b-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000145"
FT miRNA 55..76
FT /accession="MIMAT0004589"
FT /product="hsa-miR-30b-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 88 BP; 23 A; 17 C; 21 G; 0 T; 27 other;
accaaguuuc aguucaugua aacauccuac acucagcugu aauacaugga uuggcuggga 60
gguggauguu uacuucagcu gacuugga 88
//
ID hsa-mir-122 standard; RNA; HSA; 85 BP.
XX
AC MI0000442;
XX
DE Homo sapiens miR-122 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-122a; hsa-miR-122a.
DR HGNC; 31501; MIR122.
DR ENTREZGENE; 406906; MIR122.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000421"
FT /product="hsa-miR-122-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Northern [2]"
FT /similarity="MI0000256"
FT miRNA 51..72
FT /accession="MIMAT0004590"
FT /product="hsa-miR-122-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 85 BP; 24 A; 18 C; 19 G; 0 T; 24 other;
ccuuagcaga gcuguggagu gugacaaugg uguuuguguc uaaacuauca aacgccauua 60
ucacacuaaa uagcuacugc uaggc 85
//
ID hsa-mir-124-1 standard; RNA; HSA; 85 BP.
XX
AC MI0000443;
XX
DE Homo sapiens miR-124-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-124a; hsa-miR-124a.
DR HGNC; 31502; MIR124-1.
DR ENTREZGENE; 406907; MIR124-1.
XX
CC miR-124 was first identified by cloning studies in mouse [1]. Its
CC expression was later verified in human embryonic stem cells [2]. The
CC mature sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [5]. The 5' end of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0004591"
FT /product="hsa-miR-124-5p"
FT /evidence=experimental
FT /experiment="cloned [5]"
FT miRNA 53..74
FT /accession="MIMAT0000422"
FT /product="hsa-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [2,4-5]"
XX
SQ Sequence 85 BP; 21 A; 21 C; 22 G; 0 T; 21 other;
aggccucucu cuccguguuc acagcggacc uugauuuaaa uguccauaca auuaaggcac 60
gcggugaaug ccaagaaugg ggcug 85
//
ID hsa-mir-124-2 standard; RNA; HSA; 109 BP.
XX
AC MI0000444;
XX
DE Homo sapiens miR-124-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-124a; hsa-miR-124a.
DR HGNC; 31503; MIR124-2.
DR ENTREZGENE; 406908; MIR124-2.
XX
CC miR-124 was first identified by cloning studies in mouse [1]. Its
CC expression was later verified in human embryonic stem cells [2]. The
CC mature sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [5]. The 5' end of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0004591"
FT /product="hsa-miR-124-5p"
FT /evidence=experimental
FT /experiment="cloned [5]"
FT miRNA 62..83
FT /accession="MIMAT0000422"
FT /product="hsa-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [2,4-5]"
XX
SQ Sequence 109 BP; 29 A; 26 C; 28 G; 0 T; 26 other;
aucaagauua gaggcucugc ucuccguguu cacagcggac cuugauuuaa ugucauacaa 60
uuaaggcacg cggugaaugc caagagcgga gccuacggcu gcacuugaa 109
//
ID hsa-mir-124-3 standard; RNA; HSA; 87 BP.
XX
AC MI0000445;
XX
DE Homo sapiens miR-124-3 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-124a; hsa-miR-124a.
DR HGNC; 31504; MIR124-3.
DR ENTREZGENE; 406909; MIR124-3.
XX
CC miR-124 was first identified by cloning studies in mouse [1]. Its
CC expression was later verified in human embryonic stem cells [2]. The
CC mature sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [5]. The 5' end of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0004591"
FT /product="hsa-miR-124-5p"
FT /evidence=experimental
FT /experiment="cloned [5]"
FT miRNA 53..74
FT /accession="MIMAT0000422"
FT /product="hsa-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [2,4-5]"
XX
SQ Sequence 87 BP; 20 A; 23 C; 24 G; 0 T; 20 other;
ugagggcccc ucugcguguu cacagcggac cuugauuuaa ugucuauaca auuaaggcac 60
gcggugaaug ccaagagagg cgccucc 87
//
ID hsa-mir-125b-1 standard; RNA; HSA; 88 BP.
XX
AC MI0000446;
XX
DE Homo sapiens miR-125b-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [3]
RX PUBMED; 15722555.
RA Lee YS, Kim HK, Chung S, Kim KS, Dutta A;
RT "Depletion of human micro-RNA miR-125b reveals that it is critical for the
RT proliferation of differentiated cells but not for the down-regulation of
RT putative targets during differentiation";
RL J Biol Chem. 280:16635-16641(2005).
XX
RN [4]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [7]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-125b; hsa-miR-125b.
DR HGNC; 31506; MIR125B1.
DR ENTREZGENE; 406911; MIR125B1.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1]. Its expression was later verified in human BC-1 cells
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000423"
FT /product="hsa-miR-125b-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4-6], Illumina [7]"
FT /similarity="MI0000725"
FT miRNA 55..76
FT /accession="MIMAT0004592"
FT /product="hsa-miR-125b-1-3p"
FT /evidence=experimental
FT /experiment="cloned [5]"
XX
SQ Sequence 88 BP; 14 A; 24 C; 23 G; 0 T; 27 other;
ugcgcuccuc ucagucccug agacccuaac uugugauguu uaccguuuaa auccacgggu 60
uaggcucuug ggagcugcga gucgugcu 88
//
ID hsa-mir-128-1 standard; RNA; HSA; 82 BP.
XX
AC MI0000447;
XX
DE Homo sapiens miR-128-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-128a; hsa-miR-128a.
DR HGNC; 31510; MIR128-1.
DR ENTREZGENE; 406915; MIR128-1.
XX
CC The most commonly cloned mature sequences derived from the previously
CC annotated mir-128a and mir-128b were shown by Landgraf et al to be
CC identical [3]. The sequences are therefore renamed mir-128-1 and
CC mir-128-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0026477"
FT /product="hsa-miR-128-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 50..70
FT /accession="MIMAT0000424"
FT /product="hsa-miR-128-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [4]"
FT /similarity="MI0000155"
XX
SQ Sequence 82 BP; 13 A; 19 C; 22 G; 0 T; 28 other;
ugagcuguug gauucggggc cguagcacug ucugagaggu uuacauuucu cacagugaac 60
cggucucuuu uucagcugcu uc 82
//
ID hsa-mir-130a standard; RNA; HSA; 89 BP.
XX
AC MI0000448;
XX
DE Homo sapiens miR-130a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-130a; hsa-miR-130a.
DR HGNC; 31514; MIR130A.
DR ENTREZGENE; 406919; MIR130A.
XX
CC miR-130a was first identified by cloning studies in mouse [1]. Its
CC expression was later verified in human embryonic stem cells [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0004593"
FT /product="hsa-miR-130a-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 55..76
FT /accession="MIMAT0000425"
FT /product="hsa-miR-130a-3p"
FT /evidence=experimental
FT /experiment="cloned [2-4], Northern [2]"
XX
SQ Sequence 89 BP; 17 A; 21 C; 24 G; 0 T; 27 other;
ugcugcuggc cagagcucuu uucacauugu gcuacugucu gcaccuguca cuagcagugc 60
aauguuaaaa gggcauuggc cguguagug 89
//
ID hsa-mir-132 standard; RNA; HSA; 101 BP.
XX
AC MI0000449;
XX
DE Homo sapiens miR-132 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-132; hsa-miR-132.
DR HGNC; 31516; MIR132.
DR ENTREZGENE; 406921; MIR132.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0004594"
FT /product="hsa-miR-132-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 59..80
FT /accession="MIMAT0000426"
FT /product="hsa-miR-132-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000158"
XX
SQ Sequence 101 BP; 17 A; 37 C; 29 G; 0 T; 18 other;
ccgcccccgc gucuccaggg caaccguggc uuucgauugu uacuguggga acuggaggua 60
acagucuaca gccauggucg ccccgcagca cgcccacgcg c 101
//
ID hsa-mir-133a-1 standard; RNA; HSA; 88 BP.
XX
AC MI0000450;
XX
DE Homo sapiens miR-133a-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-133a; hsa-miR-133a.
DR HGNC; 31517; MIR133A1.
DR ENTREZGENE; 406922; MIR133A1.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0026478"
FT /product="hsa-miR-133a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 53..74
FT /accession="MIMAT0000427"
FT /product="hsa-miR-133a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000820"
XX
SQ Sequence 88 BP; 24 A; 21 C; 18 G; 0 T; 25 other;
acaaugcuuu gcuagagcug guaaaaugga accaaaucgc cucuucaaug gauuuggucc 60
ccuucaacca gcuguagcua ugcauuga 88
//
ID hsa-mir-133a-2 standard; RNA; HSA; 102 BP.
XX
AC MI0000451;
XX
DE Homo sapiens miR-133a-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-133a; hsa-miR-133a.
DR HGNC; 31518; MIR133A2.
DR ENTREZGENE; 406923; MIR133A2.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1] later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0026478"
FT /product="hsa-miR-133a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 59..80
FT /accession="MIMAT0000427"
FT /product="hsa-miR-133a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000820"
XX
SQ Sequence 102 BP; 25 A; 24 C; 28 G; 0 T; 25 other;
gggagccaaa ugcuuugcua gagcugguaa aauggaacca aaucgacugu ccaauggauu 60
ugguccccuu caaccagcug uagcugugca uugauggcgc cg 102
//
ID hsa-mir-135a-1 standard; RNA; HSA; 90 BP.
XX
AC MI0000452;
XX
DE Homo sapiens miR-135a-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-135a; hsa-miR-135a.
DR HGNC; 31520; MIR135A1.
DR ENTREZGENE; 406925; MIR135A1.
XX
CC miR-135a was first identified by cloning studies in mouse [1]. Its
CC expression was later verified in human embryonic stem cells [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0000428"
FT /product="hsa-miR-135a-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT miRNA 56..77
FT /accession="MIMAT0004595"
FT /product="hsa-miR-135a-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 90 BP; 15 A; 22 C; 25 G; 0 T; 28 other;
aggccucgcu guucucuaug gcuuuuuauu ccuaugugau ucuacugcuc acucauauag 60
ggauuggagc cguggcgcac ggcggggaca 90
//
ID hsa-mir-135a-2 standard; RNA; HSA; 100 BP.
XX
AC MI0000453;
XX
DE Homo sapiens miR-135a-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-135a; hsa-miR-135a.
DR HGNC; 31521; MIR135A2.
DR ENTREZGENE; 406926; MIR135A2.
XX
CC miR-135a was first identified by cloning studies in mouse [1]. Its
CC expression was later verified in human embryonic stem cells [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0000428"
FT /product="hsa-miR-135a-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT miRNA 61..82
FT /accession="MIMAT0037309"
FT /product="hsa-miR-135a-2-3p"
FT /evidence=not_experimental
XX
SQ Sequence 100 BP; 34 A; 13 C; 19 G; 0 T; 34 other;
agauaaauuc acucuagugc uuuauggcuu uuuauuccua ugugauagua auaaagucuc 60
auguagggau ggaagccaug aaauacauug ugaaaaauca 100
//
ID hsa-mir-137 standard; RNA; HSA; 102 BP.
XX
AC MI0000454;
XX
DE Homo sapiens miR-137 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-137; hsa-miR-137.
DR HGNC; 31523; MIR137.
DR ENTREZGENE; 406928; MIR137.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0037310"
FT /product="hsa-miR-137-5p"
FT /evidence=not_experimental
FT miRNA 59..81
FT /accession="MIMAT0000429"
FT /product="hsa-miR-137-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000163"
XX
SQ Sequence 102 BP; 22 A; 19 C; 31 G; 0 T; 30 other;
gguccucuga cucucuucgg ugacggguau ucuugggugg auaauacgga uuacguuguu 60
auugcuuaag aauacgcgua gucgaggaga guaccagcgg ca 102
//
ID hsa-mir-138-2 standard; RNA; HSA; 84 BP.
XX
AC MI0000455;
XX
DE Homo sapiens miR-138-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-138; hsa-miR-138.
DR HGNC; 31525; MIR138-2.
DR ENTREZGENE; 406930; MIR138-2.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..32
FT /accession="MIMAT0000430"
FT /product="hsa-miR-138-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000722"
FT miRNA 57..78
FT /accession="MIMAT0004596"
FT /product="hsa-miR-138-2-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 84 BP; 16 A; 25 C; 23 G; 0 T; 20 other;
cguugcugca gcugguguug ugaaucaggc cgacgagcag cgcauccucu uacccggcua 60
uuucacgaca ccaggguugc auca 84
//
ID hsa-mir-140 standard; RNA; HSA; 100 BP.
XX
AC MI0000456;
XX
DE Homo sapiens miR-140 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-140; hsa-miR-140.
DR HGNC; 31527; MIR140.
DR ENTREZGENE; 406932; MIR140.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1]. Its expression was later verified in human [2,3]. The
CC mature sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [3]. The 5' end of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0000431"
FT /product="hsa-miR-140-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000165"
FT miRNA 62..82
FT /accession="MIMAT0004597"
FT /product="hsa-miR-140-3p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
XX
SQ Sequence 100 BP; 18 A; 27 C; 27 G; 0 T; 28 other;
ugugucucuc ucuguguccu gccagugguu uuacccuaug guagguuacg ucaugcuguu 60
cuaccacagg guagaaccac ggacaggaua ccggggcacc 100
//
ID hsa-mir-141 standard; RNA; HSA; 95 BP.
XX
AC MI0000457;
XX
DE Homo sapiens miR-141 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-141; hsa-miR-141.
DR HGNC; 31528; MIR141.
DR ENTREZGENE; 406933; MIR141.
XX
CC This miRNA sequence was predicted based on homology to a verified miRNA
CC from mouse [1]. Michael et al. subsequently verified expression of
CC miR-141 in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0004598"
FT /product="hsa-miR-141-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 59..80
FT /accession="MIMAT0000432"
FT /product="hsa-miR-141-3p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
XX
SQ Sequence 95 BP; 16 A; 24 C; 29 G; 0 T; 26 other;
cggccggccc uggguccauc uuccaguaca guguuggaug gucuaauugu gaagcuccua 60
acacugucug guaaagaugg cucccgggug gguuc 95
//
ID hsa-mir-142 standard; RNA; HSA; 87 BP.
XX
AC MI0000458;
XX
DE Homo sapiens miR-142 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-142-3p; hsa-miR-142-3p.
DR TARGETS:PICTAR-VERT; hsa-miR-142-5p; hsa-miR-142-5p.
DR HGNC; 31529; MIR142.
DR ENTREZGENE; 406934; MIR142.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1]. Michael et al. verified the expression of a sequence from
CC the 3' arm of this stem-loop (named miR-142-3p here) [2], and both
CC miR-142-5p (from the 5' arm) and miR-142-3p ware later detected in human
CC HL-60 leukemia cells [3]. The mature sequence shown here represents the
CC most commonly cloned form from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0000433"
FT /product="hsa-miR-142-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT /similarity="MI0000167"
FT miRNA 52..74
FT /accession="MIMAT0000434"
FT /product="hsa-miR-142-3p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
XX
SQ Sequence 87 BP; 25 A; 16 C; 23 G; 0 T; 23 other;
gacagugcag ucacccauaa aguagaaagc acuacuaaca gcacuggagg guguaguguu 60
uccuacuuua uggaugagug uacugug 87
//
ID hsa-mir-143 standard; RNA; HSA; 106 BP.
XX
AC MI0000459;
XX
DE Homo sapiens miR-143 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-143; hsa-miR-143.
DR HGNC; 31530; MIR143.
DR ENTREZGENE; 406935; MIR143.
XX
CC This miRNA sequence was predicted based on homology to a verified miRNA
CC from mouse [1]. Michael et al. subsequently verified expression of
CC miR-143 in human, and demonstrated significantly reduced levels of the
CC miRNA in precancerous and neoplastic colorectal tissue [2]. miR-143
CC cloned in [3] has a 1 nt 3' extension (A), which is incompatible with the
CC genome sequence.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..48
FT /accession="MIMAT0004599"
FT /product="hsa-miR-143-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 61..81
FT /accession="MIMAT0000435"
FT /product="hsa-miR-143-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [4]"
XX
SQ Sequence 106 BP; 21 A; 26 C; 35 G; 0 T; 24 other;
gcgcagcgcc cugucuccca gccugaggug cagugcugca ucucugguca guugggaguc 60
ugagaugaag cacuguagcu caggaagaga gaaguuguuc ugcagc 106
//
ID hsa-mir-144 standard; RNA; HSA; 86 BP.
XX
AC MI0000460;
XX
DE Homo sapiens miR-144 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-144; hsa-miR-144.
DR HGNC; 31531; MIR144.
DR ENTREZGENE; 406936; MIR144.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1]. The expression of this miRNA has not been verified in
CC human. The mature sequence shown here represents the most commonly cloned
CC form from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0004600"
FT /product="hsa-miR-144-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 52..71
FT /accession="MIMAT0000436"
FT /product="hsa-miR-144-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000168"
XX
SQ Sequence 86 BP; 21 A; 20 C; 23 G; 0 T; 22 other;
uggggcccug gcugggauau caucauauac uguaaguuug cgaugagaca cuacaguaua 60
gaugauguac uaguccgggc accccc 86
//
ID hsa-mir-145 standard; RNA; HSA; 88 BP.
XX
AC MI0000461;
XX
DE Homo sapiens miR-145 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-145; hsa-miR-145.
DR HGNC; 31532; MIR145.
DR ENTREZGENE; 406937; MIR145.
XX
CC This miRNA sequence was predicted based on homology to a verified miRNA
CC from mouse [1]. Michael et al. subsequently verified expression of
CC miR-145 in human, and demonstrated significantly reduced levels of the
CC miRNA in precancerous and neoplastic colorectal tissue [2]. The mature
CC sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000437"
FT /product="hsa-miR-145-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
FT miRNA 54..75
FT /accession="MIMAT0004601"
FT /product="hsa-miR-145-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 88 BP; 18 A; 21 C; 21 G; 0 T; 28 other;
caccuugucc ucacggucca guuuucccag gaaucccuua gaugcuaaga uggggauucc 60
uggaaauacu guucuugagg ucaugguu 88
//
ID hsa-mir-152 standard; RNA; HSA; 87 BP.
XX
AC MI0000462;
XX
DE Homo sapiens miR-152 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [4]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
RN [5]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-152; hsa-miR-152.
DR HGNC; 31538; MIR152.
DR ENTREZGENE; 406943; MIR152.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0026479"
FT /product="hsa-miR-152-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 54..74
FT /accession="MIMAT0000438"
FT /product="hsa-miR-152-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [4-5]"
FT /similarity="MI0000174"
XX
SQ Sequence 87 BP; 16 A; 29 C; 26 G; 0 T; 16 other;
uguccccccc ggcccagguu cugugauaca cuccgacucg ggcucuggag cagucagugc 60
augacagaac uugggcccgg aaggacc 87
//
ID hsa-mir-153-1 standard; RNA; HSA; 90 BP.
XX
AC MI0000463;
XX
DE Homo sapiens miR-153-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-153; hsa-miR-153.
DR HGNC; 31539; MIR153-1.
DR ENTREZGENE; 406944; MIR153-1.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..75
FT /accession="MIMAT0000439"
FT /product="hsa-miR-153-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000175"
XX
SQ Sequence 90 BP; 20 A; 21 C; 21 G; 0 T; 28 other;
cucacagcug ccagugucau uuuugugauc ugcagcuagu auucucacuc caguugcaua 60
gucacaaaag ugaucauugg cagguguggc 90
//
ID hsa-mir-153-2 standard; RNA; HSA; 87 BP.
XX
AC MI0000464;
XX
DE Homo sapiens miR-153-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-153; hsa-miR-153.
DR HGNC; 31540; MIR153-2.
DR ENTREZGENE; 406945; MIR153-2.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0026480"
FT /product="hsa-miR-153-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 53..74
FT /accession="MIMAT0000439"
FT /product="hsa-miR-153-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000175"
XX
SQ Sequence 87 BP; 23 A; 14 C; 24 G; 0 T; 26 other;
agcgguggcc agugucauuu uugugauguu gcagcuagua auaugagccc aguugcauag 60
ucacaaaagu gaucauugga aacugug 87
//
ID hsa-mir-191 standard; RNA; HSA; 92 BP.
XX
AC MI0000465;
XX
DE Homo sapiens miR-191 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-191; hsa-miR-191.
DR HGNC; 31561; MIR191.
DR ENTREZGENE; 406966; MIR191.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1]. The expression of this miRNA was later confirmed in human
CC HL-60 leukemia cells [2]. The mature sequence shown here represents the
CC most commonly cloned form from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000440"
FT /product="hsa-miR-191-5p"
FT /evidence=experimental
FT /experiment="cloned [2-5]"
FT /similarity="MI0000233"
FT miRNA 58..79
FT /accession="MIMAT0001618"
FT /product="hsa-miR-191-3p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
XX
SQ Sequence 92 BP; 16 A; 31 C; 24 G; 0 T; 21 other;
cggcuggaca gcgggcaacg gaaucccaaa agcagcuguu gucuccagag cauuccagcu 60
gcgcuuggau uucguccccu gcucuccugc cu 92
//
ID hsa-mir-9-1 standard; RNA; HSA; 89 BP.
XX
AC MI0000466;
XX
DE Homo sapiens miR-9-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-9; hsa-miR-9.
DR TARGETS:PICTAR-VERT; hsa-miR-9*; hsa-miR-9*.
DR HGNC; 31641; MIR9-1.
DR ENTREZGENE; 407046; MIR9-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000441"
FT /product="hsa-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000720"
FT miRNA 55..76
FT /accession="MIMAT0000442"
FT /product="hsa-miR-9-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000720"
XX
SQ Sequence 89 BP; 25 A; 13 C; 23 G; 0 T; 28 other;
cgggguuggu uguuaucuuu gguuaucuag cuguaugagu gguguggagu cuucauaaag 60
cuagauaacc gaaaguaaaa auaacccca 89
//
ID hsa-mir-9-2 standard; RNA; HSA; 87 BP.
XX
AC MI0000467;
XX
DE Homo sapiens miR-9-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-9; hsa-miR-9.
DR TARGETS:PICTAR-VERT; hsa-miR-9*; hsa-miR-9*.
DR HGNC; 31642; MIR9-2.
DR ENTREZGENE; 407047; MIR9-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000441"
FT /product="hsa-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000157"
FT miRNA 53..74
FT /accession="MIMAT0000442"
FT /product="hsa-miR-9-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000157"
XX
SQ Sequence 87 BP; 26 A; 13 C; 19 G; 0 T; 29 other;
ggaagcgagu uguuaucuuu gguuaucuag cuguaugagu guauuggucu ucauaaagcu 60
agauaaccga aaguaaaaac uccuuca 87
//
ID hsa-mir-9-3 standard; RNA; HSA; 90 BP.
XX
AC MI0000468;
XX
DE Homo sapiens miR-9-3 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-9; hsa-miR-9.
DR TARGETS:PICTAR-VERT; hsa-miR-9*; hsa-miR-9*.
DR HGNC; 31646; MIR9-3.
DR ENTREZGENE; 407051; MIR9-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000441"
FT /product="hsa-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000721"
FT miRNA 55..76
FT /accession="MIMAT0000442"
FT /product="hsa-miR-9-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000721"
XX
SQ Sequence 90 BP; 25 A; 19 C; 21 G; 0 T; 25 other;
ggaggcccgu uucucucuuu gguuaucuag cuguaugagu gccacagagc cgucauaaag 60
cuagauaacc gaaaguagaa augauucuca 90
//
ID hsa-mir-125a standard; RNA; HSA; 86 BP.
XX
AC MI0000469;
XX
DE Homo sapiens miR-125a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-125a; hsa-miR-125a.
DR HGNC; 31505; MIR125A.
DR ENTREZGENE; 406910; MIR125A.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0000443"
FT /product="hsa-miR-125a-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000151"
FT miRNA 53..74
FT /accession="MIMAT0004602"
FT /product="hsa-miR-125a-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
XX
SQ Sequence 86 BP; 14 A; 24 C; 27 G; 0 T; 21 other;
ugccagucuc uaggucccug agacccuuua accugugagg acauccaggg ucacagguga 60
gguucuuggg agccuggcgu cuggcc 86
//
ID hsa-mir-125b-2 standard; RNA; HSA; 89 BP.
XX
AC MI0000470;
XX
DE Homo sapiens miR-125b-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [3]
RX PUBMED; 15722555.
RA Lee YS, Kim HK, Chung S, Kim KS, Dutta A;
RT "Depletion of human micro-RNA miR-125b reveals that it is critical for the
RT proliferation of differentiated cells but not for the down-regulation of
RT putative targets during differentiation";
RL J Biol Chem. 280:16635-16641(2005).
XX
RN [4]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [7]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-125b; hsa-miR-125b.
DR HGNC; 31507; MIR125B2.
DR ENTREZGENE; 406912; MIR125B2.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1]. Its expression was later verified in human BC-1 cells
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000423"
FT /product="hsa-miR-125b-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4-6], Illumina [7]"
FT /similarity="MI0000725"
FT miRNA 54..75
FT /accession="MIMAT0004603"
FT /product="hsa-miR-125b-2-3p"
FT /evidence=experimental
FT /experiment="cloned [5]"
XX
SQ Sequence 89 BP; 22 A; 21 C; 23 G; 0 T; 23 other;
accagacuuu uccuaguccc ugagacccua acuugugagg uauuuuagua acaucacaag 60
ucaggcucuu gggaccuagg cggagggga 89
//
ID hsa-mir-126 standard; RNA; HSA; 85 BP.
XX
AC MI0000471;
XX
DE Homo sapiens miR-126 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-126; hsa-miR-126.
DR TARGETS:PICTAR-VERT; hsa-miR-126*; hsa-miR-126*.
DR HGNC; 31508; MIR126.
DR ENTREZGENE; 406913; MIR126.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0000444"
FT /product="hsa-miR-126-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000153"
FT miRNA 52..73
FT /accession="MIMAT0000445"
FT /product="hsa-miR-126-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000153"
XX
SQ Sequence 85 BP; 19 A; 23 C; 22 G; 0 T; 21 other;
cgcuggcgac gggacauuau uacuuuuggu acgcgcugug acacuucaaa cucguaccgu 60
gaguaauaau gcgccgucca cggca 85
//
ID hsa-mir-127 standard; RNA; HSA; 97 BP.
XX
AC MI0000472;
XX
DE Homo sapiens miR-127 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 18230126.
RA Afanasyeva EA, Hotz-Wagenblatt A, Glatting KH, Westermann F;
RT "New miRNAs cloned from neuroblastoma";
RL BMC Genomics. 9:52(2008).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-127; hsa-miR-127.
DR HGNC; 31509; MIR127.
DR ENTREZGENE; 406914; MIR127.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1]. The expression of this miRNA was later confirmed by
CC cloning in human cells [2,3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0004604"
FT /product="hsa-miR-127-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT miRNA 57..78
FT /accession="MIMAT0000446"
FT /product="hsa-miR-127-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000899"
XX
SQ Sequence 97 BP; 20 A; 25 C; 26 G; 0 T; 26 other;
ugugaucacu gucuccagcc ugcugaagcu cagagggcuc ugauucagaa agaucaucgg 60
auccgucuga gcuuggcugg ucggaagucu caucauc 97
//
ID hsa-mir-129-2 standard; RNA; HSA; 90 BP.
XX
AC MI0000473;
XX
DE Homo sapiens miR-129-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-129; hsa-miR-129.
DR HGNC; 31513; MIR129-2.
DR ENTREZGENE; 406918; MIR129-2.
XX
CC This miRNA sequence was predicted based on homology to a verified miRNA
CC cloned from mouse cerebellum [1]. Expression of this miRNA was
CC subsequently verified in a human osteoblast sarcoma cell line [2].
CC Reference [2] named the human/mouse conserved sequence miR-129b, but
CC subsequent genome searches suggest that the same mature sequence may be
CC expressed from two predicted hairpin precursors in both human (this entry
CC and MIR:MI0000252) and mouse (MIR:MI0000222 and MIR:MI0000585). Landgraf
CC et al. show that the 5' product of mir-129-1 (MIR:MI0000222) is the
CC predominant one, whereas both 5' and 3' products are significantly
CC expressed from mir-129-2 (this entry) [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0000242"
FT /product="hsa-miR-129-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT miRNA 57..78
FT /accession="MIMAT0004605"
FT /product="hsa-miR-129-2-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 90 BP; 19 A; 25 C; 23 G; 0 T; 23 other;
ugcccuucgc gaaucuuuuu gcggucuggg cuugcuguac auaacucaau agccggaagc 60
ccuuacccca aaaagcauuu gcggagggcg 90
//
ID hsa-mir-134 standard; RNA; HSA; 73 BP.
XX
AC MI0000474;
XX
DE Homo sapiens miR-134 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-134; hsa-miR-134.
DR HGNC; 31519; MIR134.
DR ENTREZGENE; 406924; MIR134.
XX
CC miR-134 was first identified by cloning studies in mouse [1]. Its
CC expression was later verified in human embryonic stem cells [2]. The
CC mature sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0000447"
FT /product="hsa-miR-134-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4], Illumina [5]"
FT miRNA 46..68
FT /accession="MIMAT0026481"
FT /product="hsa-miR-134-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 73 BP; 13 A; 22 C; 22 G; 0 T; 16 other;
cagggugugu gacugguuga ccagaggggc augcacugug uucacccugu gggccaccua 60
gucaccaacc cuc 73
//
ID hsa-mir-136 standard; RNA; HSA; 82 BP.
XX
AC MI0000475;
XX
DE Homo sapiens miR-136 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-136; hsa-miR-136.
DR HGNC; 31522; MIR136.
DR ENTREZGENE; 406927; MIR136.
XX
CC miR-136 was first identified by cloning studies in mouse [1]. Its
CC expression was later verified in human embryonic stem cells [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0000448"
FT /product="hsa-miR-136-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
FT miRNA 49..70
FT /accession="MIMAT0004606"
FT /product="hsa-miR-136-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 82 BP; 16 A; 18 C; 19 G; 0 T; 29 other;
ugagcccucg gaggacucca uuuguuuuga ugauggauuc uuaugcucca ucaucgucuc 60
aaaugagucu ucagaggguu cu 82
//
ID hsa-mir-138-1 standard; RNA; HSA; 99 BP.
XX
AC MI0000476;
XX
DE Homo sapiens miR-138-1 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-138; hsa-miR-138.
DR HGNC; 31524; MIR138-1.
DR ENTREZGENE; 406929; MIR138-1.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1]. Expression in human was later validated by cloning [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0000430"
FT /product="hsa-miR-138-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000722"
FT miRNA 63..84
FT /accession="MIMAT0004607"
FT /product="hsa-miR-138-1-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 99 BP; 23 A; 28 C; 30 G; 0 T; 18 other;
cccuggcaug gugugguggg gcagcuggug uugugaauca ggccguugcc aaucagagaa 60
cggcuacuuc acaacaccag ggccacacca cacuacagg 99
//
ID hsa-mir-146a standard; RNA; HSA; 99 BP.
XX
AC MI0000477;
XX
DE Homo sapiens miR-146a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 31533; MIR146A.
DR ENTREZGENE; 406938; MIR146A.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1]. Its expression was later verified in human [2,3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0000449"
FT /product="hsa-miR-146a-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000170"
FT miRNA 57..78
FT /accession="MIMAT0004608"
FT /product="hsa-miR-146a-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 99 BP; 20 A; 22 C; 23 G; 0 T; 34 other;
ccgaugugua uccucagcuu ugagaacuga auuccauggg uugugucagu gucagaccuc 60
ugaaauucag uucuucagcu gggauaucuc ugucaucgu 99
//
ID hsa-mir-149 standard; RNA; HSA; 89 BP.
XX
AC MI0000478;
XX
DE Homo sapiens miR-149 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-149; hsa-miR-149.
DR HGNC; 31536; MIR149.
DR ENTREZGENE; 406941; MIR149.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0000450"
FT /product="hsa-miR-149-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000171"
FT miRNA 56..76
FT /accession="MIMAT0004609"
FT /product="hsa-miR-149-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 89 BP; 9 A; 25 C; 39 G; 0 T; 16 other;
gccggcgccc gagcucuggc uccgugucuu cacucccgug cuuguccgag gagggaggga 60
gggacggggg cugugcuggg gcagcugga 89
//
ID hsa-mir-150 standard; RNA; HSA; 84 BP.
XX
AC MI0000479;
XX
DE Homo sapiens miR-150 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-150; hsa-miR-150.
DR HGNC; 31537; MIR150.
DR ENTREZGENE; 406942; MIR150.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000451"
FT /product="hsa-miR-150-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000172"
FT miRNA 51..72
FT /accession="MIMAT0004610"
FT /product="hsa-miR-150-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 84 BP; 13 A; 30 C; 26 G; 0 T; 15 other;
cuccccaugg cccugucucc caacccuugu accagugcug ggcucagacc cugguacagg 60
ccugggggac agggaccugg ggac 84
//
ID hsa-mir-154 standard; RNA; HSA; 84 BP.
XX
AC MI0000480;
XX
DE Homo sapiens miR-154 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-154; hsa-miR-154.
DR TARGETS:PICTAR-VERT; hsa-miR-154*; hsa-miR-154*.
DR HGNC; 31541; MIR154.
DR ENTREZGENE; 406946; MIR154.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000452"
FT /product="hsa-miR-154-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT /similarity="MI0000176"
FT miRNA 51..72
FT /accession="MIMAT0000453"
FT /product="hsa-miR-154-3p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Northern [2]"
FT /similarity="MI0000176"
XX
SQ Sequence 84 BP; 19 A; 16 C; 18 G; 0 T; 31 other;
gugguacuug aagauagguu auccguguug ccuucgcuuu auuugugacg aaucauacac 60
gguugaccua uuuuucagua ccaa 84
//
ID hsa-mir-185 standard; RNA; HSA; 82 BP.
XX
AC MI0000482;
XX
DE Homo sapiens miR-185 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [5]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-185; hsa-miR-185.
DR HGNC; 31556; MIR185.
DR ENTREZGENE; 406961; MIR185.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1]. Its expression was later verified in human BC-1 cells
CC [2]. The mature sequence shown here represents the most commonly cloned
CC form from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000455"
FT /product="hsa-miR-185-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4], Illumina [5]"
FT /similarity="MI0000227"
FT miRNA 50..71
FT /accession="MIMAT0004611"
FT /product="hsa-miR-185-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 82 BP; 12 A; 25 C; 27 G; 0 T; 18 other;
agggggcgag ggauuggaga gaaaggcagu uccugauggu ccccucccca ggggcuggcu 60
uuccucuggu ccuucccucc ca 82
//
ID hsa-mir-186 standard; RNA; HSA; 86 BP.
XX
AC MI0000483;
XX
DE Homo sapiens miR-186 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-186; hsa-miR-186.
DR HGNC; 31557; MIR186.
DR ENTREZGENE; 406962; MIR186.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse. Expression of this miRNA was also verified in a human
CC osteoblast sarcoma cell line [1]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000456"
FT /product="hsa-miR-186-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
FT miRNA 54..75
FT /accession="MIMAT0004612"
FT /product="hsa-miR-186-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 86 BP; 18 A; 13 C; 18 G; 0 T; 37 other;
ugcuuguaac uuuccaaaga auucuccuuu ugggcuuucu gguuuuauuu uaagcccaaa 60
ggugaauuuu uugggaaguu ugagcu 86
//
ID hsa-mir-188 standard; RNA; HSA; 86 BP.
XX
AC MI0000484;
XX
DE Homo sapiens miR-188 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 18230126.
RA Afanasyeva EA, Hotz-Wagenblatt A, Glatting KH, Westermann F;
RT "New miRNAs cloned from neuroblastoma";
RL BMC Genomics. 9:52(2008).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-188; hsa-miR-188.
DR HGNC; 31559; MIR188.
DR ENTREZGENE; 406964; MIR188.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2]. The mature sequence shown
CC here represents the most commonly cloned form from large-scale cloning
CC studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0000457"
FT /product="hsa-miR-188-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000230"
FT miRNA 54..74
FT /accession="MIMAT0004613"
FT /product="hsa-miR-188-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
XX
SQ Sequence 86 BP; 15 A; 27 C; 23 G; 0 T; 21 other;
ugcucccucu cucacauccc uugcauggug gagggugagc uuucugaaaa ccccucccac 60
augcaggguu ugcaggaugg cgagcc 86
//
ID hsa-mir-190a standard; RNA; HSA; 85 BP.
XX
AC MI0000486;
XX
DE Homo sapiens miR-190a stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-190; hsa-miR-190.
DR HGNC; 31560; MIR190.
DR ENTREZGENE; 406965; MIR190.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000458"
FT /product="hsa-miR-190a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000232"
FT miRNA 52..72
FT /accession="MIMAT0026482"
FT /product="hsa-miR-190a-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 85 BP; 22 A; 15 C; 14 G; 0 T; 34 other;
ugcaggccuc ugugugauau guuugauaua uuagguuguu auuuaaucca acuauauauc 60
aaacauauuc cuacaguguc uugcc 85
//
ID hsa-mir-193a standard; RNA; HSA; 88 BP.
XX
AC MI0000487;
XX
DE Homo sapiens miR-193a stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 31563; MIR193A.
DR ENTREZGENE; 406968; MIR193A.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0004614"
FT /product="hsa-miR-193a-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT miRNA 55..76
FT /accession="MIMAT0000459"
FT /product="hsa-miR-193a-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000235"
XX
SQ Sequence 88 BP; 15 A; 22 C; 34 G; 0 T; 17 other;
cgaggauggg agcugagggc ugggucuuug cgggcgagau gagggugucg gaucaacugg 60
ccuacaaagu cccaguucuc ggcccccg 88
//
ID hsa-mir-195 standard; RNA; HSA; 87 BP.
XX
AC MI0000489;
XX
DE Homo sapiens miR-195 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-195; hsa-miR-195.
DR HGNC; 31566; MIR195.
DR ENTREZGENE; 406971; MIR195.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0000461"
FT /product="hsa-miR-195-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000237"
FT miRNA 53..74
FT /accession="MIMAT0004615"
FT /product="hsa-miR-195-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 87 BP; 19 A; 21 C; 28 G; 0 T; 19 other;
agcuucccug gcucuagcag cacagaaaua uuggcacagg gaagcgaguc ugccaauauu 60
ggcugugcug cuccaggcag gguggug 87
//
ID hsa-mir-320a standard; RNA; HSA; 72 BP.
XX
AC MI0000542;
XX
DE Homo sapiens miR-320a stem-loop
XX
RN [1]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [5]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-320; hsa-miR-320.
DR HGNC; 31632; MIR320A.
DR ENTREZGENE; 407037; MIR320A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0037311"
FT /product="hsa-miR-320a-5p"
FT /evidence=not_experimental
FT miRNA 42..63
FT /accession="MIMAT0000510"
FT /product="hsa-miR-320a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5]"
XX
SQ Sequence 72 BP; 13 A; 21 C; 22 G; 0 T; 16 other;
cuccccuccg ccuucucuuc ccgguucuuc ccggagucgg gaaaagcugg guugagaggg 60
cgaaaaagga ug 72
//
ID mmu-mir-19b-2 standard; RNA; MMU; 84 BP.
XX
AC MI0000546;
XX
DE Mus musculus miR-19b-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676868; Mir19b-2.
DR ENTREZGENE; 387195; Mir19b-2.
XX
CC Mouse miR-19b was cloned from mouse tissues by independent groups [1,2].
CC There are two predicted hairpin precursors, with closely related human
CC homologues [4]: mir-19b-1 (MIR:MI0000718) on chromosome 14, and mir-19b-2
CC (previously named mir-19b here, MIR:MI0000546) on mouse chromosome X.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..34
FT /accession="MIMAT0017010"
FT /product="mmu-miR-19b-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 54..76
FT /accession="MIMAT0000513"
FT /product="mmu-miR-19b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3,5], Northern [2], Illumina [6-7]"
XX
SQ Sequence 84 BP; 24 A; 12 C; 20 G; 0 T; 28 other;
acuuacgauu aguuuugcag auuugcaguu cagcguauau gugaauauau ggcugugcaa 60
auccaugcaa aacugauugu ggga 84
//
ID mmu-mir-30c-1 standard; RNA; MMU; 89 BP.
XX
AC MI0000547;
XX
DE Mus musculus miR-30c-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676909; Mir30c-1.
DR ENTREZGENE; 387227; Mir30c-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0000514"
FT /product="mmu-miR-30c-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
FT miRNA 56..77
FT /accession="MIMAT0004616"
FT /product="mmu-miR-30c-1-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 89 BP; 18 A; 19 C; 25 G; 0 T; 27 other;
accauguugu agugugugua aacauccuac acucucagcu gugagcucaa gguggcuggg 60
agaggguugu uuacuccuuc ugccaugga 89
//
ID mmu-mir-30c-2 standard; RNA; MMU; 84 BP.
XX
AC MI0000548;
XX
DE Mus musculus miR-30c-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619048; Mir30c-2.
DR ENTREZGENE; 723964; Mir30c-2.
XX
CC miR-30c was cloned and mapped to chromosome 4 in reference [1]
CC (MIR:MI0000547). A search of more recent mouse genome assemblies suggests
CC the presence of a second locus encoding miR-30c on chromosome 1,
CC represented by this entry.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0000514"
FT /product="mmu-miR-30c-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
FT miRNA 54..75
FT /accession="MIMAT0005438"
FT /product="mmu-miR-30c-2-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 84 BP; 25 A; 17 C; 19 G; 0 T; 23 other;
gagugacaga uauuguaaac auccuacacu cucagcugug aaaaguaaga aagcugggag 60
aaggcuguuu acucucucug ccuu 84
//
ID mmu-mir-30d standard; RNA; MMU; 82 BP.
XX
AC MI0000549;
XX
DE Mus musculus miR-30d stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [8]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676910; Mir30d.
DR ENTREZGENE; 387228; Mir30d.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0000515"
FT /product="mmu-miR-30d-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Illumina [6,8]"
FT miRNA 52..73
FT /accession="MIMAT0017011"
FT /product="mmu-miR-30d-3p"
FT /evidence=experimental
FT /experiment="454 [7], Illumina [8]"
XX
SQ Sequence 82 BP; 19 A; 22 C; 19 G; 0 T; 22 other;
aagucugugu cuguaaacau ccccgacugg aagcuguaag ccacagccaa gcuuucaguc 60
agauguuugc ugcuacuggc uc 82
//
ID mmu-mir-148a standard; RNA; MMU; 99 BP.
XX
AC MI0000550;
XX
DE Mus musculus miR-148a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676833; Mir148a.
DR ENTREZGENE; 387166; Mir148a.
XX
CC This sequence was previsouly named mir-148 here and in [1], but is renamed
CC to avoid confusion with mir-148b (MIR:MI0000617). This sequence maps to
CC mouse chromosome 6.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0004617"
FT /product="mmu-miR-148a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 61..82
FT /accession="MIMAT0000516"
FT /product="mmu-miR-148a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0000253"
XX
SQ Sequence 99 BP; 25 A; 20 C; 25 G; 0 T; 29 other;
agccaguuug gucuuuugag acaaaguucu gagacacucc gacucugagu augauagaag 60
ucagugcacu acagaacuuu gucucuagag gcugugguc 99
//
ID mmu-mir-192 standard; RNA; MMU; 89 BP.
XX
AC MI0000551;
XX
DE Mus musculus miR-192 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676856; Mir192.
DR ENTREZGENE; 387187; Mir192.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0000517"
FT /product="mmu-miR-192-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 57..78
FT /accession="MIMAT0017012"
FT /product="mmu-miR-192-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 89 BP; 18 A; 27 C; 18 G; 0 T; 26 other;
cgugcacagg gcucugaccu augaauugac agccaguacu cuuuucucuc cucuggcugc 60
caauuccaua ggucacaggu auguucacc 89
//
ID mmu-mir-196a-1 standard; RNA; MMU; 102 BP.
XX
AC MI0000552;
XX
DE Mus musculus miR-196a-1 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 15105502.
RA Yekta S, Shih IH, Bartel DP;
RT "MicroRNA-directed cleavage of HOXB8 mRNA";
RL Science. 304:594-596(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676860; Mir196a-1.
DR ENTREZGENE; 387191; Mir196a-1.
XX
CC Yekta et al. report that miR-196 miRNAs are expressed from HOX gene
CC clusters in mammals, and that HOX genes in these clusters are targets of
CC miR-196. Indeed, HOXB8 mRNA was shown to be a natural target for
CC miR-196-directed cleavage through a perfectly complementary miR-target
CC site. Other HOX genes have imperfect miR-196 complementary sites
CC indicative of regulation by translational repression [2]. The mature
CC sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0000518"
FT /product="mmu-miR-196a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Illumina [4,6]"
FT miRNA 62..83
FT /accession="MIMAT0017013"
FT /product="mmu-miR-196a-1-3p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
XX
SQ Sequence 102 BP; 23 A; 22 C; 27 G; 0 T; 30 other;
ugagccggga cuguugagug aaguagguag uuucauguug uugggccugg cuuucugaac 60
acaacgacau caaaccaccu gauucauggc aguuacugcu uc 102
//
ID mmu-mir-196a-2 standard; RNA; MMU; 85 BP.
XX
AC MI0000553;
XX
DE Mus musculus miR-196a-2 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 15105502.
RA Yekta S, Shih IH, Bartel DP;
RT "MicroRNA-directed cleavage of HOXB8 mRNA";
RL Science. 304:594-596(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618739; Mir196a-2.
DR ENTREZGENE; 723958; Mir196a-2.
XX
CC Yekta et al. report that miR-196 miRNAs are expressed from HOX gene
CC clusters in mammals, and that HOX genes in these clusters are targets of
CC miR-196. Indeed, HOXB8 mRNA was shown to be a natural target for
CC miR-196-directed cleavage through a perfectly complementary miR-target
CC site. Other HOX genes have imperfect miR-196 complementary sites
CC indicative of regulation by translational repression [2]. The mature
CC sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000518"
FT /product="mmu-miR-196a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Illumina [4-5]"
FT miRNA 52..73
FT /accession="MIMAT0004618"
FT /product="mmu-miR-196a-2-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 85 BP; 20 A; 14 C; 23 G; 0 T; 28 other;
agcugaucug uggcuuaggu aguuucaugu uguugggauu gaguuuugaa cucggcaaca 60
agaaacugcc ugaguuacau caguc 85
//
ID mmu-mir-200a standard; RNA; MMU; 90 BP.
XX
AC MI0000554;
XX
DE Mus musculus miR-200a stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676874; Mir200a.
DR ENTREZGENE; 387242; Mir200a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0004619"
FT /product="mmu-miR-200a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 54..75
FT /accession="MIMAT0000519"
FT /product="mmu-miR-200a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 90 BP; 17 A; 23 C; 24 G; 0 T; 26 other;
cugggccucu gugggcaucu uaccggacag ugcuggauuu cuuggcuuga cucuaacacu 60
gucugguaac gauguucaaa ggugacccac 90
//
ID mmu-mir-208a standard; RNA; MMU; 83 BP.
XX
AC MI0000555;
XX
DE Mus musculus miR-208a stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676883; Mir208a.
DR ENTREZGENE; 387204; Mir208a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0017014"
FT /product="mmu-miR-208a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 50..71
FT /accession="MIMAT0000520"
FT /product="mmu-miR-208a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3]"
XX
SQ Sequence 83 BP; 20 A; 17 C; 24 G; 0 T; 22 other;
uuccuuugac gggugagcuu uuggcccggg uuauaccuga cacucacgua uaagacgagc 60
aaaaagcuug uuggucagag gag 83
//
ID mmu-let-7a-1 standard; RNA; MMU; 94 BP.
XX
AC MI0000556;
XX
DE Mus musculus let-7a-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676793; Mirlet7a-1.
DR ENTREZGENE; 387244; Mirlet7a-1.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0000521"
FT /product="mmu-let-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
FT miRNA 64..85
FT /accession="MIMAT0004620"
FT /product="mmu-let-7a-1-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 94 BP; 24 A; 17 C; 23 G; 0 T; 30 other;
uucacugugg gaugagguag uagguuguau aguuuuaggg ucacacccac cacugggaga 60
uaacuauaca aucuacuguc uuuccuaagg ugau 94
//
ID mmu-let-7a-2 standard; RNA; MMU; 96 BP.
XX
AC MI0000557;
XX
DE Mus musculus let-7a-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619049; Mirlet7a-2.
DR ENTREZGENE; 723965; Mirlet7a-2.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000521"
FT /product="mmu-let-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5,7]"
FT miRNA 62..82
FT /accession="MIMAT0017015"
FT /product="mmu-let-7a-2-3p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
XX
SQ Sequence 96 BP; 22 A; 19 C; 25 G; 0 T; 30 other;
cugcauguuc ccagguugag guaguagguu guauaguuua gaguuacauc aagggagaua 60
acuguacagc cuccuagcuu uccuugggac uugcac 96
//
ID mmu-let-7b standard; RNA; MMU; 85 BP.
XX
AC MI0000558;
XX
DE Mus musculus let-7b stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676794; Mirlet7b.
DR ENTREZGENE; 387245; Mirlet7b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000522"
FT /product="mmu-let-7b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
FT miRNA 61..82
FT /accession="MIMAT0004621"
FT /product="mmu-let-7b-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 85 BP; 18 A; 19 C; 25 G; 0 T; 23 other;
gcagggugag guaguagguu gugugguuuc agggcaguga uguugccccu ccgaagauaa 60
cuauacaacc uacugccuuc ccuga 85
//
ID mmu-let-7c-1 standard; RNA; MMU; 94 BP.
XX
AC MI0000559;
XX
DE Mus musculus let-7c-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676795; Mirlet7c-1.
DR ENTREZGENE; 387246; Mirlet7c-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000523"
FT /product="mmu-let-7c-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Northern [2], Illumina [6-7]"
FT miRNA 61..82
FT /accession="MIMAT0004622"
FT /product="mmu-let-7c-1-3p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
XX
SQ Sequence 94 BP; 19 A; 18 C; 26 G; 0 T; 31 other;
ugugugcauc cggguugagg uaguagguug uaugguuuag aguuacaccc ugggaguuaa 60
cuguacaacc uucuagcuuu ccuuggagca cacu 94
//
ID mmu-let-7c-2 standard; RNA; MMU; 95 BP.
XX
AC MI0000560;
XX
DE Mus musculus let-7c-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619050; Mirlet7c-2.
DR ENTREZGENE; 723966; Mirlet7c-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000523"
FT /product="mmu-let-7c-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Northern [2], Illumina [6-7]"
FT miRNA 62..83
FT /accession="MIMAT0005439"
FT /product="mmu-let-7c-2-3p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
XX
SQ Sequence 95 BP; 14 A; 22 C; 29 G; 0 T; 30 other;
acggccuuug gggugaggua guagguugua ugguuuuggg cucugccccg cucugcggua 60
acuauacaau cuacugucuu uccugaagug gccgc 95
//
ID mmu-let-7e standard; RNA; MMU; 93 BP.
XX
AC MI0000561;
XX
DE Mus musculus let-7e stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676797; Mirlet7e.
DR ENTREZGENE; 387248; Mirlet7e.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000524"
FT /product="mmu-let-7e-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5,7]"
FT miRNA 60..81
FT /accession="MIMAT0017016"
FT /product="mmu-let-7e-3p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
XX
SQ Sequence 93 BP; 18 A; 29 C; 29 G; 0 T; 17 other;
cgcgcccccc gggcugaggu aggagguugu auaguugagg aagacacccg aggagaucac 60
uauacggccu ccuagcuuuc cccaggcugc gcc 93
//
ID mmu-let-7f-1 standard; RNA; MMU; 89 BP.
XX
AC MI0000562;
XX
DE Mus musculus let-7f-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676798; Mirlet7f1.
DR ENTREZGENE; 387252; Mirlet7f-1.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0000525"
FT /product="mmu-let-7f-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
FT miRNA 64..85
FT /accession="MIMAT0004623"
FT /product="mmu-let-7f-1-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 89 BP; 23 A; 12 C; 23 G; 0 T; 31 other;
aucagaguga gguaguagau uguauaguug ugggguagug auuuuacccu guuuaggaga 60
uaacuauaca aucuauugcc uucccugag 89
//
ID mmu-let-7f-2 standard; RNA; MMU; 83 BP.
XX
AC MI0000563;
XX
DE Mus musculus let-7f-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676799; Mirlet7f2.
DR ENTREZGENE; 387253; Mirlet7f-2.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0000525"
FT /product="mmu-let-7f-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5,7]"
FT miRNA 58..78
FT /accession="MIMAT0017017"
FT /product="mmu-let-7f-2-3p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
XX
SQ Sequence 83 BP; 20 A; 15 C; 20 G; 0 T; 28 other;
ugugggauga gguaguagau uguauaguuu uagggucaua ccccaucuug gagauaacua 60
uacagucuac ugucuuuccc acg 83
//
ID mmu-mir-15a standard; RNA; MMU; 84 BP.
XX
AC MI0000564;
XX
DE Mus musculus miR-15a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676841; Mir15a.
DR ENTREZGENE; 387174; Mir15a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000526"
FT /product="mmu-miR-15a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Northern [2], Illumina [6-7]"
FT miRNA 52..73
FT /accession="MIMAT0004624"
FT /product="mmu-miR-15a-3p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
XX
SQ Sequence 84 BP; 26 A; 15 C; 23 G; 0 T; 20 other;
cccuuggagu aaaguagcag cacauaaugg uuuguggaug uugaaaaggu gcaggccaua 60
cugugcugcc ucaaaauaca agga 84
//
ID mmu-mir-16-1 standard; RNA; MMU; 93 BP.
XX
AC MI0000565;
XX
DE Mus musculus miR-16-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676843; Mir16-1.
DR ENTREZGENE; 387134; Mir16-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000527"
FT /product="mmu-miR-16-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4-5], Northern [2], Illumina [6]"
FT miRNA 58..79
FT /accession="MIMAT0004625"
FT /product="mmu-miR-16-1-3p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
XX
SQ Sequence 93 BP; 25 A; 17 C; 24 G; 0 T; 27 other;
augucagcgg ugccuuagca gcacguaaau auuggcguua agauucugaa auuaccucca 60
guauugacug ugcugcugaa guaagguugg caa 93
//
ID mmu-mir-16-2 standard; RNA; MMU; 95 BP.
XX
AC MI0000566;
XX
DE Mus musculus miR-16-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [8]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618690; Mir16-2.
DR ENTREZGENE; 723949; Mir16-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000527"
FT /product="mmu-miR-16-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4-5], Northern [2], Illumina
FT [6,8]"
FT miRNA 59..80
FT /accession="MIMAT0017018"
FT /product="mmu-miR-16-2-3p"
FT /evidence=experimental
FT /experiment="454 [7], Illumina [8]"
XX
SQ Sequence 95 BP; 30 A; 16 C; 19 G; 0 T; 30 other;
caugcuuguu ccacucuagc agcacguaaa uauuggcgua gugaaauaaa uauuaaacac 60
caauauuauu gugcugcuuu agugugacag ggaua 95
//
ID mmu-mir-18a standard; RNA; MMU; 96 BP.
XX
AC MI0000567;
XX
DE Mus musculus miR-18a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676844; Mirn18.
DR ENTREZGENE; 387135; Mir18.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0000528"
FT /product="mmu-miR-18a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 58..79
FT /accession="MIMAT0004626"
FT /product="mmu-miR-18a-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 96 BP; 22 A; 19 C; 23 G; 0 T; 32 other;
ugcgugcuuu uuguucuaag gugcaucuag ugcagauagu gaaguagacu agcaucuacu 60
gcccuaagug cuccuucugg cauaagaagu uauguc 96
//
ID mmu-mir-20a standard; RNA; MMU; 107 BP.
XX
AC MI0000568;
XX
DE Mus musculus miR-20a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676872; Mir20a.
DR ENTREZGENE; 387139; Mir20a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..49
FT /accession="MIMAT0000529"
FT /product="mmu-miR-20a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 63..84
FT /accession="MIMAT0004627"
FT /product="mmu-miR-20a-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 107 BP; 28 A; 22 C; 27 G; 0 T; 30 other;
gugugaugug acagcuucug uagcacuaaa gugcuuauag ugcagguagu guguagccau 60
cuacugcauu acgagcacuu aaaguacugc cagcuguaga acuccag 107
//
ID mmu-mir-21a standard; RNA; MMU; 92 BP.
XX
AC MI0000569;
XX
DE Mus musculus miR-21 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [5]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 17687032.
RA Sathyan P, Golden HB, Miranda RC;
RT "Competing interactions between micro-RNAs determine neural progenitor
RT survival and proliferation after ethanol exposure: evidence from an ex
RT vivo model of the fetal cerebral cortical neuroepithelium";
RL J Neurosci. 27:8546-8557(2007).
XX
RN [8]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [9]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676885; Mir21.
DR ENTREZGENE; 387140; Mir21.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0000530"
FT /product="mmu-miR-21a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4-6], Northern [2], Illumina [8]"
FT miRNA 56..77
FT /accession="MIMAT0004628"
FT /product="mmu-miR-21a-3p"
FT /evidence=experimental
FT /experiment="cloned [6], Illumina [8-9]"
XX
SQ Sequence 92 BP; 20 A; 19 C; 23 G; 0 T; 30 other;
uguaccaccu ugucggauag cuuaucagac ugauguugac uguugaaucu cauggcaaca 60
gcagucgaug ggcugucuga cauuuuggua uc 92
//
ID mmu-mir-22 standard; RNA; MMU; 95 BP.
XX
AC MI0000570;
XX
DE Mus musculus miR-22 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676896; Mir22.
DR ENTREZGENE; 387141; Mir22.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0004629"
FT /product="mmu-miR-22-5p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
FT miRNA 57..78
FT /accession="MIMAT0000531"
FT /product="mmu-miR-22-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4-5], Northern [2], Illumina [6]"
XX
SQ Sequence 95 BP; 18 A; 29 C; 24 G; 0 T; 24 other;
accuggcuga gccgcaguag uucuucagug gcaagcuuua uguccugacc cagcuaaagc 60
ugccaguuga agaacuguug cccucugccc cuggc 95
//
ID mmu-mir-23a standard; RNA; MMU; 75 BP.
XX
AC MI0000571;
XX
DE Mus musculus miR-23a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676897; Mir23a.
DR ENTREZGENE; 387216; Mir23a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0017019"
FT /product="mmu-miR-23a-5p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
FT miRNA 46..66
FT /accession="MIMAT0000532"
FT /product="mmu-miR-23a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4,6]"
XX
SQ Sequence 75 BP; 16 A; 19 C; 23 G; 0 T; 17 other;
cggacggcug ggguuccugg ggaugggauu ugaugccagu cacaaaucac auugccaggg 60
auuuccaacu gaccc 75
//
ID mmu-mir-24-2 standard; RNA; MMU; 107 BP.
XX
AC MI0000572;
XX
DE Mus musculus miR-24-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [5]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [8]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618755; Mir24-2.
DR ENTREZGENE; 723960; Mir24-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0005440"
FT /product="mmu-miR-24-2-5p"
FT /evidence=experimental
FT /experiment="cloned [6], Illumina [7-8]"
FT miRNA 61..82
FT /accession="MIMAT0000219"
FT /product="mmu-miR-24-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4-6], Northern [2], Illumina [7]"
XX
SQ Sequence 107 BP; 20 A; 37 C; 29 G; 0 T; 21 other;
gccucucucc gggcuccgcc ucccgugccu acugagcuga aacaguugau uccagugcac 60
uggcucaguu cagcaggaac aggaguccag cccccuagga gcuggca 107
//
ID mmu-mir-26a-1 standard; RNA; MMU; 90 BP.
XX
AC MI0000573;
XX
DE Mus musculus miR-26a-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676900; Mir26a-1.
DR ENTREZGENE; 387218; Mir26a-1.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000533"
FT /product="mmu-miR-26a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
FT miRNA 55..76
FT /accession="MIMAT0017020"
FT /product="mmu-miR-26a-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
XX
SQ Sequence 90 BP; 16 A; 23 C; 31 G; 0 T; 20 other;
aaggccgugg ccucguucaa guaauccagg auaggcugug caggucccaa ggggccuauu 60
cuugguuacu ugcacgggga cgcgggccug 90
//
ID mmu-mir-26b standard; RNA; MMU; 85 BP.
XX
AC MI0000575;
XX
DE Mus musculus miR-26b stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [5]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [8]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676901; Mir26b.
DR ENTREZGENE; 387219; Mir26b.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [6].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0000534"
FT /product="mmu-miR-26b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4-6], Northern [2], Illumina [7]"
FT miRNA 51..72
FT /accession="MIMAT0004630"
FT /product="mmu-miR-26b-3p"
FT /evidence=experimental
FT /experiment="cloned [6], Illumina [7-8]"
XX
SQ Sequence 85 BP; 13 A; 23 C; 27 G; 0 T; 22 other;
ugcccgggac ccaguucaag uaauucagga uagguugugg ugcugaccag ccuguucucc 60
auuacuuggc ucgggggccg gugcc 85
//
ID mmu-mir-29a standard; RNA; MMU; 88 BP.
XX
AC MI0000576;
XX
DE Mus musculus miR-29a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676904; Mir29a.
DR ENTREZGENE; 387222; Mir29a.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [5].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0004631"
FT /product="mmu-miR-29a-5p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
FT miRNA 54..75
FT /accession="MIMAT0000535"
FT /product="mmu-miR-29a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Northern [2], Illumina [6-7]"
XX
SQ Sequence 88 BP; 24 A; 14 C; 20 G; 0 T; 30 other;
accccuuaga ggaugacuga uuucuuuugg uguucagagu caauagaauu uucuagcacc 60
aucugaaauc gguuauaaug auugggga 88
//
ID mmu-mir-27a standard; RNA; MMU; 87 BP.
XX
AC MI0000578;
XX
DE Mus musculus miR-27a stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676902; Mir27a.
DR ENTREZGENE; 387220; Mir27a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0004633"
FT /product="mmu-miR-27a-5p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
FT miRNA 56..76
FT /accession="MIMAT0000537"
FT /product="mmu-miR-27a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4-5], Northern [1], Illumina [6]"
XX
SQ Sequence 87 BP; 17 A; 25 C; 27 G; 0 T; 18 other;
uggccugagg agcagggcuu agcugcuugu gagcaagguc cacagcaaag ucguguucac 60
aguggcuaag uuccgccccc uggaccc 87
//
ID mmu-mir-31 standard; RNA; MMU; 106 BP.
XX
AC MI0000579;
XX
DE Mus musculus miR-31 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619330; Mir31.
DR ENTREZGENE; 723895; Mir31.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..49
FT /accession="MIMAT0000538"
FT /product="mmu-miR-31-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 64..86
FT /accession="MIMAT0004634"
FT /product="mmu-miR-31-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 106 BP; 26 A; 26 C; 27 G; 0 T; 27 other;
ugcuccugua acucggaacu ggagaggagg caagaugcug gcauagcugu ugaacugaga 60
accugcuaug ccaacauauu gccaucuuuc cugucugaca gcagcu 106
//
ID mmu-mir-92a-2 standard; RNA; MMU; 91 BP.
XX
AC MI0000580;
XX
DE Mus musculus miR-92a-2 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619438; Mirn92-2.
DR ENTREZGENE; 723942; Mir92-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0004635"
FT /product="mmu-miR-92a-2-5p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
FT miRNA 55..75
FT /accession="MIMAT0000539"
FT /product="mmu-miR-92a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], Illumina [5-6]"
XX
SQ Sequence 91 BP; 22 A; 16 C; 27 G; 0 T; 26 other;
ugcccauuca uccacaggug gggauuggug gcauuacuug uguuagauau aaaguauugc 60
acuugucccg gccugaggaa gaaagagggu u 91
//
ID mmu-mir-93 standard; RNA; MMU; 88 BP.
XX
AC MI0000581;
XX
DE Mus musculus miR-93 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619439; Mir93.
DR ENTREZGENE; 723885; Mir93.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0000540"
FT /product="mmu-miR-93-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], Illumina [4-5]"
FT miRNA 54..75
FT /accession="MIMAT0004636"
FT /product="mmu-miR-93-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 88 BP; 19 A; 25 C; 24 G; 0 T; 20 other;
agucaugggg gcuccaaagu gcuguucgug cagguagugu aauuaccuga ccuacugcug 60
agcuagcacu ucccgagccc ccaggaca 88
//
ID mmu-mir-96 standard; RNA; MMU; 106 BP.
XX
AC MI0000583;
XX
DE Mus musculus miR-96 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619440; Mir96.
DR ENTREZGENE; 723886; Mir96.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0000541"
FT /product="mmu-miR-96-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], Illumina [4,6]"
FT miRNA 66..87
FT /accession="MIMAT0017021"
FT /product="mmu-miR-96-3p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
XX
SQ Sequence 106 BP; 20 A; 26 C; 28 G; 0 T; 32 other;
ccaguaccau cugcuuggcc gauuuuggca cuagcacauu uuugcuugug ucucuccgcu 60
gugagcaauc auguguagug ccaauauggg aaaagcgggc ugcugc 106
//
ID mmu-mir-34a standard; RNA; MMU; 102 BP.
XX
AC MI0000584;
XX
DE Mus musculus miR-34a stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
RC Erratum RNA 9:631-632(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619363; Mir34a.
DR ENTREZGENE; 723848; Mir34a.
XX
CC Houbaviy et al. cloned this miRNA from embryonic stem cells and named it
CC miR-172 [1]. This sequence is homologous to human miR-34a
CC (MIR:MI0000268), and so is renamed miR-34a here. This sequence is not
CC related to miR172 from plants (MIR:MI0000215 and MIR:MI0000216). The
CC mature sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0000542"
FT /product="mmu-miR-34a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Illumina [4,6]"
FT miRNA 64..84
FT /accession="MIMAT0017022"
FT /product="mmu-miR-34a-3p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
XX
SQ Sequence 102 BP; 25 A; 18 C; 27 G; 0 T; 32 other;
ccagcuguga guaauucuuu ggcagugucu uagcugguug uugugaguau uagcuaagga 60
agcaaucagc aaguauacug cccuagaagu gcugcacauu gu 102
//
ID mmu-mir-129-2 standard; RNA; MMU; 90 BP.
XX
AC MI0000585;
XX
DE Mus musculus miR-129-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618711; Mir129-2.
DR ENTREZGENE; 723953; Mir129-2.
XX
CC The miRNA from the 5' arm of this precursor was verified by cloning in
CC mouse [1]. Reference [2] named the human/mouse conserved sequence
CC miR-129b, but subsequent genome searches suggest that the same mature
CC sequence may be expressed from two predicted hairpin precursors in both
CC mouse (this entry and MIR:MI0000222) and human (MIR:MI0000252 and
CC MIR:MI0000473). Poy et al. independently cloned a mature miRNA from the
CC 3' arm of the precursor, called mmu-miR-129-3p [3]. This sequence is not
CC perfectly conserved in the other predicted mouse miR-129 precursor
CC (MIR:MI0000222). The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0000209"
FT /product="mmu-miR-129-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], Illumina [5-6]"
FT miRNA 57..78
FT /accession="MIMAT0000544"
FT /product="mmu-miR-129-2-3p"
FT /evidence=experimental
FT /experiment="cloned [3-4], Illumina [5-6]"
XX
SQ Sequence 90 BP; 19 A; 25 C; 23 G; 0 T; 23 other;
ugccuuucgc gaaucuuuuu gcggucuggg cuugcuguac auaacucaau agccggaagc 60
ccuuacccca aaaagcauuc gcggagggcg 90
//
ID mmu-mir-98 standard; RNA; MMU; 108 BP.
XX
AC MI0000586;
XX
DE Mus musculus miR-98 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619441; Mir98.
DR ENTREZGENE; 723947; Mir98.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000545"
FT /product="mmu-miR-98-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2,4]"
FT /similarity="MI0000100"
FT miRNA 74..95
FT /accession="MIMAT0017023"
FT /product="mmu-miR-98-3p"
FT /evidence=experimental
FT /experiment="454 [3], Illumina [4]"
XX
SQ Sequence 108 BP; 25 A; 16 C; 32 G; 0 T; 35 other;
cugcacaugc uggggugagg uaguaaguug uauuguugug ggguagggau uuuaggcccc 60
aguaagaaga uaacuauaca acuuacuacu uuccuuggug uguggcau 108
//
ID mmu-mir-103-1 standard; RNA; MMU; 86 BP.
XX
AC MI0000587;
XX
DE Mus musculus miR-103-1 stem-loop
XX
RN [1]
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619058; Mir103-1.
DR ENTREZGENE; 723824; Mir103-1.
XX
CC This miRNA sequence was predicted based on homology to a verified miRNA
CC from human [1], and subsequently verified by cloning [2-4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0017024"
FT /product="mmu-miR-103-1-5p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
FT miRNA 52..74
FT /accession="MIMAT0000546"
FT /product="mmu-miR-103-3p"
FT /evidence=experimental
FT /experiment="cloned [2-4], Illumina [5,7]"
XX
SQ Sequence 86 BP; 18 A; 20 C; 21 G; 0 T; 27 other;
uucuuacugc ccucggcuuc uuuacagugc ugccuuguug cauauggauc aagcagcauu 60
guacagggcu augaaggcau ugagac 86
//
ID mmu-mir-103-2 standard; RNA; MMU; 86 BP.
XX
AC MI0000588;
XX
DE Mus musculus miR-103-2 stem-loop
XX
RN [1]
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619059; Mir103-2.
DR ENTREZGENE; 723825; Mir103-2.
XX
CC This miRNA sequence was predicted based on homology to a verified miRNA
CC from human [1], and subsequently verified by cloning [2,3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0017025"
FT /product="mmu-miR-103-2-5p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
FT miRNA 52..74
FT /accession="MIMAT0000546"
FT /product="mmu-miR-103-3p"
FT /evidence=experimental
FT /experiment="cloned [2-4], Illumina [5,7]"
XX
SQ Sequence 86 BP; 22 A; 19 C; 20 G; 0 T; 25 other;
gucuucgugc uuucagcuuc uuuacagugc ugccuuguag cauucagguc aagcagcauu 60
guacagggcu augaaagaac caagaa 86
//
ID rno-mir-322-1 standard; RNA; RNO; 95 BP.
XX
AC MI0000589;
XX
DE Rattus norvegicus miR-322-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314144; Mir322.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC The miR-322 locus has an orthologous sequence in human (MIR:MI0001446),
CC which expresses an experimentally validated mature miRNA sequence from its
CC 5' arm, named miR-424. The human mir-424 locus does not appear to contain
CC a homolog of the miR-322 sequence. The mouse ortholog (MIR:MI0000590)
CC appears able to express both miR-322 and miR-424. Both miR-322 and
CC miR-424 have been experimentally verified in rat. Landgraf et al. show
CC that the 5' product is the predominant one [3]. The 5' product is
CC therefore renamed miR-322 and the 3' product renamed miR-322*.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0001619"
FT /product="rno-miR-322-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], SOLiD [4]"
FT /similarity="MI0001446"
FT miRNA 61..80
FT /accession="MIMAT0000547"
FT /product="rno-miR-322-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [4]"
XX
SQ Sequence 95 BP; 26 A; 24 C; 24 G; 0 T; 21 other;
ccucgcugac uccgaaggga ugcagcagca auucauguuu uggaguauug ccaagguuca 60
aaacaugaag cgcugcaaca ccccuucgug ggaaa 95
//
ID mmu-mir-322 standard; RNA; MMU; 95 BP.
XX
AC MI0000590;
XX
DE Mus musculus miR-322 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619333; Mir322.
DR ENTREZGENE; 723907; Mir322.
XX
CC The mir-322 locus appears able to express two mature miRNA sequences. Poy
CC et al. cloned a sequence originating from the 5' arm from mouse pancreatic
CC beta cells [2]. This sequence is orthologous to the experimentally
CC validated miR-424 sequence from human (MIR:MI0001446), but was named
CC miR-322-5p in [2]. The mature product from the 3' arm of this precursor
CC sequence is the predicted mouse homologue of miR-322, experimentally
CC verified in rat (MIR:MI0000589) [1], and later in mouse [3]. The
CC orthologous human locus does not appear to contain the miR-322 sequence.
CC Landgraf et al. confirm that the 5' product is the predominant one [4].
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0000548"
FT /product="mmu-miR-322-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [5-6]"
FT miRNA 61..81
FT /accession="MIMAT0000549"
FT /product="mmu-miR-322-3p"
FT /evidence=experimental
FT /experiment="cloned [3-4], Illumina [5-6]"
FT /similarity="MI0000589"
XX
SQ Sequence 95 BP; 24 A; 24 C; 25 G; 0 T; 22 other;
ccucguugac uccgaagggc ugcagcagca auucauguuu uggaguauug ccaagguuca 60
aaacaugaag cgcugcaaca ccccuucgug gggaa 95
//
ID rno-mir-323 standard; RNA; RNO; 86 BP.
XX
AC MI0000591;
XX
DE Rattus norvegicus miR-323 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313969; Mir323.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0004637"
FT /product="rno-miR-323-5p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
FT miRNA 51..71
FT /accession="MIMAT0000550"
FT /product="rno-miR-323-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], SOLiD [4]"
XX
SQ Sequence 86 BP; 14 A; 20 C; 25 G; 0 T; 27 other;
uugguacuug gagagaggug guccguggcg cguucgcuuc auuuauggcg cacauuacac 60
ggucgaccuc uuugcgguau cuaauc 86
//
ID mmu-mir-323 standard; RNA; MMU; 86 BP.
XX
AC MI0000592;
XX
DE Mus musculus miR-323 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619334; Mir323.
DR ENTREZGENE; 723839; Mir323.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This mouse miRNA is predicted based on homology to the verified rat
CC sequence (MIR:MI0000591). Seitz et al. independently predicted the miRNA
CC hairpin precursor sequence by conservation between mouse and human [2].
CC Landgraf et al. later cloned and sequenced mature products from both arms
CC of the predicted hairpin [3]. The mature sequence shown here represents
CC the most commonly cloned form from large-scale cloning studies [3]. The
CC 5' end of the miRNA may be offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0004638"
FT /product="mmu-miR-323-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT miRNA 51..71
FT /accession="MIMAT0000551"
FT /product="mmu-miR-323-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0000591"
XX
SQ Sequence 86 BP; 14 A; 20 C; 25 G; 0 T; 27 other;
uugguacuug gagagaggug guccguggcg cguucgcuuc auuuauggcg cacauuacac 60
ggucgaccuc uuugcgguau cuaauc 86
//
ID rno-mir-301a standard; RNA; RNO; 100 BP.
XX
AC MI0000593;
XX
DE Rattus norvegicus miR-301a stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314217; Mir301a.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This rat miRNA has an independently verified homologue in mouse
CC (MIR:MI0000401). The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [3]. The ends of
CC the miRNA may be offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0017026"
FT /product="rno-miR-301a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
FT miRNA 61..83
FT /accession="MIMAT0000552"
FT /product="rno-miR-301a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
XX
SQ Sequence 100 BP; 23 A; 26 C; 24 G; 0 T; 27 other;
ccugcuggcu acugcugacg acugcucuga cuuuauugca cuacuguacu guacagcuag 60
cagugcaaua guauugucaa agcauccggg agcaggcuac 100
//
ID rno-mir-324 standard; RNA; RNO; 83 BP.
XX
AC MI0000594;
XX
DE Rattus norvegicus miR-324 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314181; Mir324.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000553"
FT /product="rno-miR-324-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4], Northern [1], SOLiD [5]"
FT miRNA 51..72
FT /accession="MIMAT0000554"
FT /product="rno-miR-324-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1,3], SOLiD [5]"
XX
SQ Sequence 83 BP; 13 A; 25 C; 25 G; 0 T; 20 other;
cugacuaugc cuccucgcau ccccuagggc auugguguaa agcuggagac ccacugcccc 60
aggugcugcu ggggguugua guc 83
//
ID mmu-mir-324 standard; RNA; MMU; 89 BP.
XX
AC MI0000595;
XX
DE Mus musculus miR-324 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619335; Mir324.
DR ENTREZGENE; 723896; Mir324.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This mouse miRNA is predicted based on homology to the verified rat
CC sequence (MIR:MI0000594) - expression of miRNAs from both arms was later
CC independently verified in mouse [2]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [3]. The predominant miR-324-3p clone has a 3' terminal U residue, which
CC is incompatible with the genome sequence [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..40
FT /accession="MIMAT0000555"
FT /product="mmu-miR-324-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [4-5]"
FT /similarity="MI0000594"
FT miRNA 53..72
FT /accession="MIMAT0000556"
FT /product="mmu-miR-324-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [4-5]"
FT /similarity="MI0000594"
XX
SQ Sequence 89 BP; 16 A; 26 C; 26 G; 0 T; 21 other;
aacugacuau gccuccucgc auccccuagg gcauuggugu aaagcuggag acccacugcc 60
ccaggugcug cuggggguug uagucugac 89
//
ID rno-mir-325 standard; RNA; RNO; 98 BP.
XX
AC MI0000596;
XX
DE Rattus norvegicus miR-325 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313970; Mir325.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000557"
FT /product="rno-miR-325-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [4]"
FT miRNA 54..75
FT /accession="MIMAT0004639"
FT /product="rno-miR-325-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
XX
SQ Sequence 98 BP; 22 A; 19 C; 23 G; 0 T; 34 other;
auauagugcu ugguuccuag uaggugcuca guaaguguuu gugacauaau ucguuuauug 60
agcaccuccu aucaaucaag cacugugcua ggcucugg 98
//
ID mmu-mir-325 standard; RNA; MMU; 98 BP.
XX
AC MI0000597;
XX
DE Mus musculus miR-325 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619336; Mir325.
DR ENTREZGENE; 723929; Mir325.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000558"
FT /product="mmu-miR-325-5p"
FT /evidence=experimental
FT /experiment="Illumina [3-4]"
FT /similarity="MI0000596"
FT miRNA 54..75
FT /accession="MIMAT0004640"
FT /product="mmu-miR-325-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 98 BP; 22 A; 19 C; 23 G; 0 T; 34 other;
auauagugcu ugguuccuag uaggugcuca guaaguguuu gugacauaau ucguuuauug 60
agcaccuccu aucaaucaag cacugugcua ggcucugg 98
//
ID mmu-mir-326 standard; RNA; MMU; 95 BP.
XX
AC MI0000598;
XX
DE Mus musculus miR-326 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619338; Mir326.
DR ENTREZGENE; 723840; Mir326.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..43
FT /accession="MIMAT0017027"
FT /product="mmu-miR-326-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 60..80
FT /accession="MIMAT0000559"
FT /product="mmu-miR-326-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT /similarity="MI0000599"
XX
SQ Sequence 95 BP; 12 A; 26 C; 31 G; 0 T; 26 other;
cucaucuguc uguugggcug ggggcagggc cuuugugaag gcggguuaug cucagaucgc 60
cucugggccc uuccuccagu cccgaggcag auuua 95
//
ID rno-let-7d standard; RNA; RNO; 98 BP.
XX
AC MI0000601;
XX
DE Rattus norvegicus let-7d stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313972; Mirlet7d.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons,
CC including the sequence identical to the miRNA cloned from the reverse
CC strand of mouse let-7d (MIR:MI0000405), named let-7* [1]. The predicted
CC precursor sequence from a newer assembly of the rat genome also contains
CC the let-7d sequence in the 5' arm. The let-7d* sequence published in [1]
CC had an extra 3' A residue, which conflicts with the sequence of the
CC precursor shown here. The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [4]. The ends of
CC the miRNA may be offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000562"
FT /product="rno-let-7d-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT miRNA 68..89
FT /accession="MIMAT0000563"
FT /product="rno-let-7d-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4], Northern [1], SOLiD [5]"
XX
SQ Sequence 98 BP; 22 A; 19 C; 28 G; 0 T; 29 other;
ugggcuccua ggaagaggua guagguugca uaguuuuagg gcagagauuu ugcccacaag 60
gaguuaacua uacgaccugc ugccuuucuu agggccuu 98
//
ID rno-mir-328a standard; RNA; RNO; 84 BP.
XX
AC MI0000602;
XX
DE Rattus norvegicus miR-328a stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314218; Mir328.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..26
FT /accession="MIMAT0017029"
FT /product="rno-miR-328a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
FT miRNA 48..69
FT /accession="MIMAT0000564"
FT /product="rno-miR-328a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], SOLiD [3]"
XX
SQ Sequence 84 BP; 14 A; 29 C; 27 G; 0 T; 14 other;
uggggcaggg gggcaggagg ggcucaggga gaaagcaucu acagccccug gcccucucug 60
cccuuccguc cccugucccc aaau 84
//
ID mmu-mir-328 standard; RNA; MMU; 97 BP.
XX
AC MI0000603;
XX
DE Mus musculus miR-328 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619340; Mir328.
DR ENTREZGENE; 723841; Mir328.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This mouse miRNA is predicted based on homology to the verified rat
CC sequence (MIR:MI0000602) - its expression was later independently verified
CC in mouse [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0017030"
FT /product="mmu-miR-328-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 61..82
FT /accession="MIMAT0000565"
FT /product="mmu-miR-328-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [4-5]"
FT /similarity="MI0000602"
XX
SQ Sequence 97 BP; 14 A; 33 C; 32 G; 0 T; 18 other;
cugucucgga gccuggggca ggggggcagg aggggcucag ggagaaagua ucuacagccc 60
cuggcccucu cugcccuucc guccccuguc cccaagu 97
//
ID rno-mir-329 standard; RNA; RNO; 97 BP.
XX
AC MI0000604;
XX
DE Rattus norvegicus miR-329 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313973; Mir329.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This rat miRNA has a predicted homologue in mouse (MIR:MI0000605).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..46
FT /accession="MIMAT0017031"
FT /product="rno-miR-329-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 61..82
FT /accession="MIMAT0000566"
FT /product="rno-miR-329-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], SOLiD [2]"
XX
SQ Sequence 97 BP; 22 A; 21 C; 20 G; 0 T; 34 other;
uguucgcuuc ugguaccgga agagagguuu ucugggucuc uguuucuuug augagaauga 60
aacacaccca gcuaaccuuu uuuucaguau caaaucc 97
//
ID mmu-mir-329 standard; RNA; MMU; 97 BP.
XX
AC MI0000605;
XX
DE Mus musculus miR-329 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619341; Mir329.
DR ENTREZGENE; 723842; Mir329.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This mouse miRNA is predicted based on homology to the verified rat
CC sequence (MIR:MI0000604). Seitz et al. independently predicted the miRNA
CC hairpin precursor sequence by conservation between mouse and human [2].
CC Landgraf et al. verified expression by cloining [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0017032"
FT /product="mmu-miR-329-5p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
FT miRNA 61..82
FT /accession="MIMAT0000567"
FT /product="mmu-miR-329-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4,6]"
FT /similarity="MI0000604"
XX
SQ Sequence 97 BP; 22 A; 21 C; 20 G; 0 T; 34 other;
uguucgcuuc ugguaccgga agagagguuu ucugggucuc uguuucuuug augagaauga 60
aacacaccca gcuaaccuuu uuuucaguau caaaucc 97
//
ID rno-mir-330 standard; RNA; RNO; 97 BP.
XX
AC MI0000606;
XX
DE Rattus norvegicus miR-330 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313974; Mir330.
XX
CC The mature miRNA originating from the 3' arm reported in [1] contains an
CC extra 3' A residue, which conflicts with the precursor sequence shown
CC here. Landgraf et al. show that the 5' miRNA is the predominant one [2].
CC The 3' mature sequence is renamed miR-300* here.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0004641"
FT /product="rno-miR-330-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT miRNA 60..82
FT /accession="MIMAT0000568"
FT /product="rno-miR-330-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [3]"
XX
SQ Sequence 97 BP; 18 A; 29 C; 26 G; 0 T; 24 other;
acccuuuggc gaucucugcc ucucugggcc ugugucuuag gcucuucaag aucuaacgag 60
caaagcacag ggccugcaga gagguagcgc ucugcuc 97
//
ID mmu-mir-330 standard; RNA; MMU; 98 BP.
XX
AC MI0000607;
XX
DE Mus musculus miR-330 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619345; Mir330.
DR ENTREZGENE; 724063; Mir330.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0004642"
FT /product="mmu-miR-330-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [2-3]"
FT miRNA 61..83
FT /accession="MIMAT0000569"
FT /product="mmu-miR-330-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [2-3]"
FT /similarity="MI0000606"
XX
SQ Sequence 98 BP; 18 A; 30 C; 27 G; 0 T; 23 other;
gacccuuugg cgaucucugc cucucugggc cugugucuua ggcucuucaa gauccaacga 60
gcaaagcaca gggccugcag agagguagcg cucugcuc 98
//
ID rno-mir-140 standard; RNA; RNO; 99 BP.
XX
AC MI0000611;
XX
DE Rattus norvegicus miR-140 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314276; Mir140.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC The cloned miRNA appears to be expressed from the 3' strand of the
CC precursor, and is therefore named miR-140* here. The mature sequence
CC shown here represents the most commonly cloned form from large-scale
CC cloning studies [4]. The ends of the miRNA may be offset with respect to
CC previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0000573"
FT /product="rno-miR-140-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4], SOLiD [5]"
FT miRNA 61..81
FT /accession="MIMAT0000574"
FT /product="rno-miR-140-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4], Northern [1], SOLiD [5]"
XX
SQ Sequence 99 BP; 20 A; 26 C; 25 G; 0 T; 28 other;
gugucucucu cuguguccug ccagugguuu uacccuaugg uagguuacau caugcuguuc 60
uaccacaggg uagaaccacg gacaggauac uggagcacc 99
//
ID rno-mir-335 standard; RNA; RNO; 98 BP.
XX
AC MI0000612;
XX
DE Rattus norvegicus miR-335 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR ENTREZGENE; 100314182; Mir335.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000575"
FT /product="rno-miR-335"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
XX
SQ Sequence 98 BP; 22 A; 20 C; 19 G; 0 T; 37 other;
ucuuuugggc gggggucaag agcaauaacg aaaaauguuu guuuuucgua aaccguuuuu 60
cauuauugcu ccugaccucc ucucauuugu uauagcca 98
//
ID rno-mir-337 standard; RNA; RNO; 97 BP.
XX
AC MI0000614;
XX
DE Rattus norvegicus miR-337 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313976; Mir337.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..49
FT /accession="MIMAT0017035"
FT /product="rno-miR-337-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 60..82
FT /accession="MIMAT0000577"
FT /product="rno-miR-337-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 97 BP; 21 A; 22 C; 28 G; 0 T; 26 other;
aguguaguga gaaguugggg ggugggaacg gcgucaugca ggaguugauu gcacagccau 60
ucagcuccua uaugaugccu uucuucaccc ccuucaa 97
//
ID mmu-mir-337 standard; RNA; MMU; 97 BP.
XX
AC MI0000615;
XX
DE Mus musculus miR-337 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619351; Mir337.
DR ENTREZGENE; 723843; Mir337.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This mouse miRNA is predicted based on homology to the verified rat
CC sequence (MIR:MI0000614). Seitz et al. later predicted a cluster of 40
CC miRNAs in the imprinted human 14q32 domain, and confirmed the expression
CC of a subset by Northern blot or primer extension in mouse [2]. Landgraf
CC et al. later cloned and sequenced mature products from both arms of the
CC hairpin, named here miR-337-5p and miR-337-3p [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..51
FT /accession="MIMAT0004644"
FT /product="mmu-miR-337-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT miRNA 62..83
FT /accession="MIMAT0000578"
FT /product="mmu-miR-337-3p"
FT /evidence=experimental
FT /experiment="PCR [2], cloned [3], Illumina [4-5]"
FT /similarity="MI0000614"
XX
SQ Sequence 97 BP; 20 A; 23 C; 28 G; 0 T; 26 other;
caguguagug agaaguuggg gggugggaac ggcgucaugc aggaguugau ugcacagcca 60
uucagcuccu auaugaugcc uuucuucacc cccuuca 97
//
ID rno-mir-148b standard; RNA; RNO; 97 BP.
XX
AC MI0000616;
XX
DE Rattus norvegicus miR-148b stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313977; Mir148b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0004645"
FT /product="rno-miR-148b-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT miRNA 61..82
FT /accession="MIMAT0000579"
FT /product="rno-miR-148b-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [3]"
XX
SQ Sequence 97 BP; 24 A; 21 C; 22 G; 0 T; 30 other;
caggcacucu uagcauuuga ggugaaguuc uguuauacac ucaggcugug gcucugaaag 60
ucagugcauc acagaacuuu gucucgaaag cuuucua 97
//
ID mmu-mir-148b standard; RNA; MMU; 97 BP.
XX
AC MI0000617;
XX
DE Mus musculus miR-148b stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618734; Mir148b.
DR ENTREZGENE; 724064; Mir148b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..47
FT /accession="MIMAT0017036"
FT /product="mmu-miR-148b-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 61..82
FT /accession="MIMAT0000580"
FT /product="mmu-miR-148b-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT /similarity="MI0000616"
XX
SQ Sequence 97 BP; 24 A; 22 C; 22 G; 0 T; 29 other;
caggcacccu uagcauuuga ggugaaguuc uguuauacac ucaggcugug gcucugaaag 60
ucagugcauc acagaacuuu gucucgaaag cuuucua 97
//
ID rno-mir-338 standard; RNA; RNO; 66 BP.
XX
AC MI0000618;
XX
DE Rattus norvegicus miR-338 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313978; Mir338.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0004646"
FT /product="rno-miR-338-5p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [5]"
FT miRNA 41..63
FT /accession="MIMAT0000581"
FT /product="rno-miR-338-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1], SOLiD [5]"
XX
SQ Sequence 66 BP; 16 A; 15 C; 17 G; 0 T; 18 other;
uccccaacaa uauccuggug cugagugggu gcacagugac uccagcauca gugauuuugu 60
ugaaga 66
//
ID mmu-mir-338 standard; RNA; MMU; 98 BP.
XX
AC MI0000619;
XX
DE Mus musculus miR-338 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619352; Mir338.
DR ENTREZGENE; 723844; Mir338.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..47
FT /accession="MIMAT0004647"
FT /product="mmu-miR-338-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT miRNA 61..82
FT /accession="MIMAT0000582"
FT /product="mmu-miR-338-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT /similarity="MI0000618"
XX
SQ Sequence 98 BP; 22 A; 28 C; 27 G; 0 T; 21 other;
caacgcugca caggccgucc uccccaacaa uauccuggug cugagugggu gcacagugac 60
uccagcauca gugauuuugu ugaagagggc agcugcca 98
//
ID rno-mir-339 standard; RNA; RNO; 96 BP.
XX
AC MI0000620;
XX
DE Rattus norvegicus miR-339 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314146; Mir339.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC The miR-339-5p sequence reported in [1] contains two 3' terminal U
CC residues, which conflict with the precursor sequence shown here. The
CC mature sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [2]. The ends of the miRNA may be offset with
CC respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000583"
FT /product="rno-miR-339-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT miRNA 51..73
FT /accession="MIMAT0004648"
FT /product="rno-miR-339-3p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
XX
SQ Sequence 96 BP; 18 A; 37 C; 26 G; 0 T; 15 other;
acggggugga caccgucccu guccuccagg agcucacgua ugccugccug ugagcgccuc 60
gacgacagag ccagagucca ccccugcacu gcccaa 96
//
ID mmu-mir-339 standard; RNA; MMU; 96 BP.
XX
AC MI0000621;
XX
DE Mus musculus miR-339 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619354; Mir339.
DR ENTREZGENE; 723898; Mir339.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000584"
FT /product="mmu-miR-339-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT /similarity="MI0000620"
FT miRNA 51..73
FT /accession="MIMAT0004649"
FT /product="mmu-miR-339-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
XX
SQ Sequence 96 BP; 14 A; 37 C; 27 G; 0 T; 18 other;
acgggguggc cacuaucccu guccuccagg agcucacgua ugccugccug ugagcgccuc 60
ggcgacagag ccggugucca ccccugcacu guccac 96
//
ID rno-mir-340-1 standard; RNA; RNO; 98 BP.
XX
AC MI0000622;
XX
DE Rattus norvegicus miR-340-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR ENTREZGENE; 100314220; Mir340.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0004650"
FT /product="rno-miR-340-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 61..83
FT /accession="MIMAT0000585"
FT /product="rno-miR-340-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 98 BP; 22 A; 18 C; 22 G; 0 T; 36 other;
cacuuguacu cggugugauu auaaagcaau gagacugauu gucauguguc guuuguggga 60
uccgucucag uuacuuuaua gccauaccug guaucuua 98
//
ID mmu-mir-340 standard; RNA; MMU; 98 BP.
XX
AC MI0000623;
XX
DE Mus musculus miR-340 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619355; Mir340.
DR ENTREZGENE; 723845; Mir340.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0004651"
FT /product="mmu-miR-340-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT miRNA 61..82
FT /accession="MIMAT0000586"
FT /product="mmu-miR-340-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT /similarity="MI0000622"
XX
SQ Sequence 98 BP; 24 A; 16 C; 21 G; 0 T; 37 other;
caauuguacu uggugugauu auaaagcaau gagacugauu gucauauguc guuuguggga 60
uccgucucag uuacuuuaua gccauaccug guaucuua 98
//
ID rno-mir-342 standard; RNA; RNO; 99 BP.
XX
AC MI0000626;
XX
DE Rattus norvegicus miR-342 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313980; Mir342.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0004652"
FT /product="rno-miR-342-5p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [5]"
FT miRNA 61..83
FT /accession="MIMAT0000589"
FT /product="rno-miR-342-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1], SOLiD [5]"
XX
SQ Sequence 99 BP; 25 A; 21 C; 30 G; 0 T; 23 other;
gaaaaugggc ucaaggugag gggugcuauc ugugauugag ggacaugguc aauggaauug 60
ucucacacag aaaucgcacc cgucaccuug gccugcuga 99
//
ID mmu-mir-342 standard; RNA; MMU; 99 BP.
XX
AC MI0000627;
XX
DE Mus musculus miR-342 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619358; Mir342.
DR ENTREZGENE; 723909; Mir342.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This mouse miRNA is predicted based on homology to the verified rat
CC sequence (MIR:MI0000626). Seitz et al. independently predicted the miRNA
CC hairpin precursor sequence by conservation between mouse and human [2].
CC Landgraf et al. later cloned and sequenced mature products from both arms
CC of the predicted hairpin [3]. The mature sequences shown here represent
CC the most commonly cloned forms from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0004653"
FT /product="mmu-miR-342-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT miRNA 61..83
FT /accession="MIMAT0000590"
FT /product="mmu-miR-342-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0000626"
XX
SQ Sequence 99 BP; 25 A; 21 C; 30 G; 0 T; 23 other;
gaaaaugggc ucaaggugag gggugcuauc ugugauugag ggacaugguc aauggaauug 60
ucucacacag aaaucgcacc cgucaccuug gccugcuga 99
//
ID rno-mir-344a-1 standard; RNA; RNO; 107 BP.
XX
AC MI0000629;
XX
DE Rattus norvegicus miR-344a-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313981; Mir344-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..39
FT /accession="MIMAT0004654"
FT /product="rno-miR-344a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT miRNA 59..81
FT /accession="MIMAT0000592"
FT /product="rno-miR-344a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], SOLiD [3]"
XX
SQ Sequence 107 BP; 31 A; 27 C; 26 G; 0 T; 23 other;
gcagccaggg uuuuuaccag ucaggcuccu ggcuagauuc cagguaccaa cugguaccug 60
aucuagccaa agccugacug uaagcuguaa aaacaaagga agacugc 107
//
ID rno-mir-345 standard; RNA; RNO; 96 BP.
XX
AC MI0000631;
XX
DE Rattus norvegicus miR-345 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314147; Mir345.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0000594"
FT /product="rno-miR-345-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], SOLiD [5]"
FT miRNA 54..75
FT /accession="MIMAT0004655"
FT /product="rno-miR-345-3p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [5]"
XX
SQ Sequence 96 BP; 16 A; 28 C; 30 G; 0 T; 22 other;
acccaagucc aggccugcug accccuaguc cagugcuugu gguggcuacu gggcccugaa 60
cuaggggucu ggagaccugg guuugaucuc cacagg 96
//
ID mmu-mir-345 standard; RNA; MMU; 96 BP.
XX
AC MI0000632;
XX
DE Mus musculus miR-345 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619361; Mir345.
DR ENTREZGENE; 723946; Mir345.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This mouse miRNA was predicted based on homology to the verified rat
CC sequence (MIR:MI0000631). Seitz et al. independently predicted the miRNA
CC hairpin precursor sequence by conservation between mouse and human [2].
CC Landgraf et al. later verified mature miRNA expression from both arms of
CC the hairpin precursor [3]. The mature sequence shown here represents the
CC most commonly cloned form from large-scale cloning studies [3]. The 5'
CC end of the miRNA may be offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000595"
FT /product="mmu-miR-345-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0000631"
FT miRNA 55..76
FT /accession="MIMAT0004656"
FT /product="mmu-miR-345-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 96 BP; 16 A; 28 C; 30 G; 0 T; 22 other;
acccaagucc aggccugcug accccuaguc cagugcuugu gguggcuacu gggcccugaa 60
cuaggggucu ggagaccugg guuugaucuc cacagg 96
//
ID rno-mir-129-2 standard; RNA; RNO; 97 BP.
XX
AC MI0000637;
XX
DE Rattus norvegicus miR-129-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313984; Mir129-2.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations. Kim et al [1] and He et al [4] both
CC identify the mature product from the 3' arm, named miR-129* here.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0000600"
FT /product="rno-miR-129-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], SOLiD [5]"
FT /similarity="MI0000585"
FT miRNA 61..82
FT /accession="MIMAT0000601"
FT /product="rno-miR-129-2-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], Northern [1], SOLiD [5]"
XX
SQ Sequence 97 BP; 21 A; 29 C; 25 G; 0 T; 22 other;
agacugcccu ucgcgaaucu uuuugcgguc ugggcuugcu guacauaacu caauagccgg 60
aagcccuuac cccaaaaagc auucgcggag ggcgcgc 97
//
ID rno-mir-20a standard; RNA; RNO; 85 BP.
XX
AC MI0000638;
XX
DE Rattus norvegicus miR-20a stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314222; Mir20a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000602"
FT /product="rno-miR-20a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT miRNA 52..72
FT /accession="MIMAT0000603"
FT /product="rno-miR-20a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [4]"
XX
SQ Sequence 85 BP; 20 A; 20 C; 20 G; 0 T; 25 other;
cagcuucugu agcacuaaag ugcuuauagu gcagguagug ugucgucauc uacugcauua 60
cgagcacuua caguacugcc agcug 85
//
ID rno-mir-350-1 standard; RNA; RNO; 99 BP.
XX
AC MI0000639;
XX
DE Rattus norvegicus miR-350-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313985; Mir350.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This rat miRNA has a predicted homologue in mouse (MIR:MI0000640). The
CC sequence reported in [1] contains a 5' terminal A residue, which conflicts
CC with the precursor sequence shown here.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..84
FT /accession="MIMAT0000604"
FT /product="rno-miR-350"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 99 BP; 30 A; 21 C; 23 G; 0 T; 25 other;
agaugccuug cuccuacaag aguaaagugc acgugcuuug ggacagugag gaaaauaaug 60
uucacaaagc ccauacacuu ucacccuuua ggagaguug 99
//
ID mmu-mir-350 standard; RNA; MMU; 99 BP.
XX
AC MI0000640;
XX
DE Mus musculus miR-350 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619366; Mir350.
DR ENTREZGENE; 723921; Mir350.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This mouse miRNA is predicted based on homology to the verified rat
CC sequence (MIR:MI0000639) - its expression was later independently verified
CC in mouse [2]. The sequence reported in [1] contains a 5' terminal A
CC residue, which conflicts with the precursor sequence shown here. The
CC mature sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..42
FT /accession="MIMAT0017040"
FT /product="mmu-miR-350-5p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
FT miRNA 61..82
FT /accession="MIMAT0000605"
FT /product="mmu-miR-350-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [4,6]"
FT /similarity="MI0000639"
XX
SQ Sequence 99 BP; 30 A; 21 C; 23 G; 0 T; 25 other;
agaugccuug cuccuacaag aguaaagugc augcgcuuug ggacagugag gaaaauaaug 60
uucacaaagc ccauacacuu ucacccuuua ggagaguug 99
//
ID rno-mir-7a-1 standard; RNA; RNO; 97 BP.
XX
AC MI0000641;
XX
DE Rattus norvegicus miR-7a-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314148; Mir7a-1.
XX
CC Landgraf et al. show that the 5' product is the predominant one [3]. The
CC 3' product is renamed miR-7a*. The mature sequence shown here represents
CC the most commonly cloned form from large-scale cloning studies [3]. The
CC ends of the miRNA may be offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0000606"
FT /product="rno-miR-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], SOLiD [4]"
FT /similarity="MI0001360"
FT miRNA 60..81
FT /accession="MIMAT0000607"
FT /product="rno-miR-7a-1-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], SOLiD [4]"
XX
SQ Sequence 97 BP; 26 A; 19 C; 22 G; 0 T; 30 other;
uguuggccua guucugugug gaagacuagu gauuuuguug uuuuuagaua acuaagacga 60
caacaaauca cagucugcca uauggcacag gccaccu 97
//
ID rno-mir-351-1 standard; RNA; RNO; 81 BP.
XX
AC MI0000642;
XX
DE Rattus norvegicus miR-351-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314289; Mir351.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC The sequence reported in [1] contains a 3' terminal U residue, which
CC conflicts with the precursor sequence shown here. The mature sequence
CC shown here represents the most commonly cloned form from large-scale
CC cloning studies [3]. The ends of the miRNA may be offset with respect to
CC previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..40
FT /accession="MIMAT0000608"
FT /product="rno-miR-351-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], SOLiD [4]"
FT miRNA 56..76
FT /accession="MIMAT0017041"
FT /product="rno-miR-351-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 81 BP; 23 A; 20 C; 24 G; 0 T; 14 other;
cauggcaccu ccauuucccu gaggagcccu uugagccuga ggugaaaaaa aaacagguca 60
agaggcgccu gggaacugga g 81
//
ID mmu-mir-351 standard; RNA; MMU; 99 BP.
XX
AC MI0000643;
XX
DE Mus musculus miR-351 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619367; Mir351.
DR ENTREZGENE; 723910; Mir351.
XX
CC The predominant miRNA cloned by Langraf et al. has a 3' terminal U
CC residue, which is incompatible with the genome sequence [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0000609"
FT /product="mmu-miR-351-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2,4]"
FT /similarity="MI0000642"
FT miRNA 58..78
FT /accession="MIMAT0017042"
FT /product="mmu-miR-351-3p"
FT /evidence=experimental
FT /experiment="454 [3], Illumina [4]"
XX
SQ Sequence 99 BP; 30 A; 22 C; 28 G; 0 T; 19 other;
cauggcaccu ccguuucccu gaggagcccu uugagccugg agugaaaaaa aaaaacaggu 60
caagaggcgc cugggaacug gagaagagug uuaaacuuc 99
//
ID mmu-mir-135b standard; RNA; MMU; 97 BP.
XX
AC MI0000646;
XX
DE Mus musculus miR-135b stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618732; Mir135b.
DR ENTREZGENE; 723818; Mir135b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000612"
FT /product="mmu-miR-135b-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT /similarity="MI0000645"
FT miRNA 55..76
FT /accession="MIMAT0017044"
FT /product="mmu-miR-135b-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 97 BP; 18 A; 25 C; 27 G; 0 T; 27 other;
cgcucugcug uggccuaugg cuuuucauuc cuaugugauu gcugcuccga acucauguag 60
ggcuaaaagc caugggcuac agugaggggc aagcucc 97
//
ID rno-mir-151 standard; RNA; RNO; 97 BP.
XX
AC MI0000647;
XX
DE Rattus norvegicus miR-151 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314223; Mir151.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC Landgraf et al show that the 5' product is the predominant one [3]. The
CC mature sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [3]. The ends of the miRNA may be offset with
CC respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0000613"
FT /product="rno-miR-151-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT miRNA 51..71
FT /accession="MIMAT0000614"
FT /product="rno-miR-151-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
FT /similarity="MI0000173"
XX
SQ Sequence 97 BP; 18 A; 33 C; 22 G; 0 T; 24 other;
agcgcuuucc ugcccucgag gagcucacag ucuaguaugu cuccucccua cuagacugag 60
gcuccuugag gacagggauc gucauacuca ccucccg 97
//
ID rno-mir-101b standard; RNA; RNO; 97 BP.
XX
AC MI0000648;
XX
DE Rattus norvegicus miR-101b stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313988; Mir101b.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0017045"
FT /product="rno-miR-101b-5p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
FT miRNA 61..81
FT /accession="MIMAT0000615"
FT /product="rno-miR-101b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
XX
SQ Sequence 97 BP; 24 A; 17 C; 26 G; 0 T; 30 other;
aucugagacu gaacuguccu uuuucgguua ucaugguacc gaugcuguag aucugaaagg 60
uacaguacug ugauagcuga agaauggugg ugccauc 97
//
ID mmu-mir-101b standard; RNA; MMU; 97 BP.
XX
AC MI0000649;
XX
DE Mus musculus miR-101b stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618696; Mir101b.
DR ENTREZGENE; 724062; Mir101b.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This mouse miRNA is predicted based on homology to the verified rat
CC sequence (MIR:MI0000648) -- expression in mouse was verified independently
CC [2]. The mature sequence shown here represents the most commonly cloned
CC form from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0017046"
FT /product="mmu-miR-101b-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 60..78
FT /accession="MIMAT0000616"
FT /product="mmu-miR-101b-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [4-5]"
FT /similarity="MI0000648"
XX
SQ Sequence 97 BP; 23 A; 20 C; 26 G; 0 T; 28 other;
aucugagacu gaacugcccu uuuucgguua ucaugguacc gaugcuguag cucugaaagg 60
uacaguacug ugauagcuga agaauggcgg ugccauc 97
//
ID hsa-mir-200c standard; RNA; HSA; 68 BP.
XX
AC MI0000650;
XX
DE Homo sapiens miR-200c stem-loop
XX
RN [1]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-200c; hsa-miR-200c.
DR HGNC; 31580; MIR200C.
DR ENTREZGENE; 406985; MIR200C.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0004657"
FT /product="hsa-miR-200c-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 44..66
FT /accession="MIMAT0000617"
FT /product="hsa-miR-200c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [2]"
XX
SQ Sequence 68 BP; 11 A; 15 C; 23 G; 0 T; 19 other;
cccucgucuu acccagcagu guuugggugc gguugggagu cucuaauacu gccggguaau 60
gauggagg 68
//
ID hsa-mir-1-1 standard; RNA; HSA; 71 BP.
XX
AC MI0000651;
XX
DE Homo sapiens miR-1-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR RFAM; RF00103; mir-1.
DR TARGETS:PICTAR-VERT; hsa-miR-1; hsa-miR-1.
DR HGNC; 31499; MIR1-1.
DR ENTREZGENE; 406904; MIR1-1.
XX
CC Lagos-Quintana et al. [1] reported the cloning of miR-1b, miR-1c and
CC miR-1d. The mature processed miR sequences are identical apart from the
CC 3' residues (A in mir-1b, C in mir-1c and UU in mir-1d). The 3' residues
CC of both miR-1b and miR-1c conflict with the predicted stem-loop precursor
CC sequence shown here and these sequences are not found in current
CC assemblies of human and mouse genomes. It is suggested that polyA
CC polymerase may add 1-3 nts to the 3' end of the mature transcript (Tom
CC Tuschl, pers. comm.). The common 21 nts of the 3 reported miR sequences
CC have been rationalised here and named miR-1. There are 2 pairs of
CC orthologous putative hairpin precursor structures named mir-1-1 (human
CC MIR:MI0000651, mouse MIR:MI0000139), and mir-1-2 (human MIR:MI0000437,
CC mouse MIR:MI0000652). The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0031892"
FT /product="hsa-miR-1-5p"
FT /evidence=not_experimental
FT miRNA 46..67
FT /accession="MIMAT0000416"
FT /product="hsa-miR-1-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000139"
XX
SQ Sequence 71 BP; 23 A; 12 C; 14 G; 0 T; 22 other;
ugggaaacau acuucuuuau augcccauau ggaccugcua agcuauggaa uguaaagaag 60
uauguaucuc a 71
//
ID mmu-mir-1a-2 standard; RNA; MMU; 72 BP.
XX
AC MI0000652;
XX
DE Mus musculus miR-1a-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00103; mir-1.
DR MGI; 3618746; Mir1-2.
DR ENTREZGENE; 723959; Mir1a-2.
XX
CC Lagos-Quintana et al. [1] reported the cloning of miR-1b, miR-1c and
CC miR-1d. The mature processed miR sequences are identical apart from the
CC 3' residues (A in mir-1b, C in mir-1c and UU in mir-1d). The 3' residues
CC of both miR-1b and miR-1c conflict with the predicted stem-loop precursor
CC sequence shown here and these sequences are not found in current
CC assemblies of human and mouse genomes. It is suggested that polyA
CC polymerase may add 1-3 nts to the 3' end of the mature transcript (Tom
CC Tuschl, pers. comm.). The common 21 nts of the 3 reported miR sequences
CC have been rationalised here and named miR-1. There are 2 pairs of
CC orthologous putative hairpin precursor structures named mir-1-1 (human
CC MIR:MI0000651, mouse MIR:MI0000139), and mir-1-2 (human MIR:MI0000437,
CC mouse MIR:MI0000652). The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0017047"
FT /product="mmu-miR-1a-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 47..68
FT /accession="MIMAT0000123"
FT /product="mmu-miR-1a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3]"
XX
SQ Sequence 72 BP; 23 A; 11 C; 13 G; 0 T; 25 other;
ucagagcaca uacuucuuua uguacccaua ugaacauuca gugcuaugga auguaaagaa 60
guauguauuu ug 72
//
ID osa-MIR156b standard; RNA; OSA; 176 BP.
XX
AC MI0000654;
XX
DE Oryza sativa miR156b stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 43..62
FT /accession="MIMAT0000619"
FT /product="osa-miR156b-5p"
FT /evidence=not_experimental
FT /similarity="MI0000183"
FT miRNA 110..130
FT /accession="MIMAT0022845"
FT /product="osa-miR156b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 176 BP; 39 A; 40 C; 47 G; 0 T; 50 other;
uugucuugag aggggaagag aucucuaugg guuuuggagg ucugacagaa gagagugagc 60
acacacggug cuuucuuagc augcaagagc caugcuggga gcugugcgug cucacucucu 120
aucugucagc cguucaccau gcccaauaug auuaaucucc uucucucagu ugacag 176
//
ID osa-MIR156c standard; RNA; OSA; 149 BP.
XX
AC MI0000655;
XX
DE Oryza sativa miR156c stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..48
FT /accession="MIMAT0000620"
FT /product="osa-miR156c-5p"
FT /evidence=not_experimental
FT /similarity="MI0000183"
FT miRNA 100..121
FT /accession="MIMAT0022846"
FT /product="osa-miR156c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 149 BP; 31 A; 32 C; 41 G; 0 T; 45 other;
ggaggaagag aggggugaga ggugaggcug acagaagaga gugagcacac auggugacuu 60
ucuugcaugc ugaauggacu caugcuugaa gcuaugugug cucacuucuc ucucugucag 120
ccauuugauc ucucuuucuc ucuuucucc 149
//
ID osa-MIR156f standard; RNA; OSA; 186 BP.
XX
AC MI0000658;
XX
DE Oryza sativa miR156f stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..23
FT /accession="MIMAT0000623"
FT /product="osa-miR156f-5p"
FT /evidence=not_experimental
FT /similarity="MI0000178"
FT miRNA 164..185
FT /accession="MIMAT0022847"
FT /product="osa-miR156f-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 186 BP; 56 A; 39 C; 54 G; 0 T; 37 other;
aguugacaga agagagugag cacacagcgg ccagacugca ucgaucuauc aaucuucccu 60
ucgacaggau agcuagauag aaagaaagag aggccgucgg cggccaugga agagagagag 120
agagagagau gaaaugauga ugaugauaca gcugccgcug cgugcucacu ucucuuucug 180
ucagcu 186
//
ID osa-MIR156g standard; RNA; OSA; 116 BP.
XX
AC MI0000659;
XX
DE Oryza sativa miR156g stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..23
FT /accession="MIMAT0000624"
FT /product="osa-miR156g-5p"
FT /evidence=not_experimental
FT /similarity="MI0000178"
FT miRNA 94..115
FT /accession="MIMAT0022848"
FT /product="osa-miR156g-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 116 BP; 27 A; 31 C; 34 G; 0 T; 24 other;
ggcugacaga agagagugag cacacagcgg gcagacugca ucugaauuac cuguugcgac 60
gaagaagacg acggacgcag cuugccguug cgugcucacu ucucucucug ucagcu 116
//
ID osa-MIR156h standard; RNA; OSA; 186 BP.
XX
AC MI0000660;
XX
DE Oryza sativa miR156h stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..23
FT /accession="MIMAT0031156"
FT /product="osa-miR156h-5p"
FT /evidence=not_experimental
FT /similarity="MI0000178"
FT miRNA 164..185
FT /accession="MIMAT0031157"
FT /product="osa-miR156h-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 186 BP; 56 A; 39 C; 54 G; 0 T; 37 other;
aguugacaga agagagugag cacacagcgg ccagacugca ucgaucuauc aaucuucccu 60
ucgacaggau agcuagauag aaagaaagag aggccgucgg cggccaugga agagagagag 120
agagagagau gaaaugauga ugaugauaca gcugccgcug cgugcucacu ucucuuucug 180
ucagcu 186
//
ID osa-MIR156j standard; RNA; OSA; 165 BP.
XX
AC MI0000662;
XX
DE Oryza sativa miR156j stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 42..61
FT /accession="MIMAT0000627"
FT /product="osa-miR156j-5p"
FT /evidence=not_experimental
FT /similarity="MI0000179"
FT miRNA 108..129
FT /accession="MIMAT0022850"
FT /product="osa-miR156j-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 165 BP; 27 A; 57 C; 51 G; 0 T; 30 other;
uuggggcggg gcgggaucga gcauaugaaa ggcgagauug uugacagaag agagugagca 60
cacggcgcgg cggcuagcca ucggcgggau gccugccccc gccgcgugcu cgcuccucuu 120
ucugucagca ucucucauca cucccucccg caucccccgc cccga 165
//
ID osa-MIR160a standard; RNA; OSA; 88 BP.
XX
AC MI0000663;
XX
DE Oryza sativa miR160a stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..24
FT /accession="MIMAT0000628"
FT /product="osa-miR160a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000192"
FT miRNA 67..87
FT /accession="MIMAT0022851"
FT /product="osa-miR160a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 88 BP; 16 A; 25 C; 27 G; 0 T; 20 other;
gugugccugg cucccuguau gccacacaug uagaccaacc cauggugucu gguugccuac 60
uggguggcgu gcaaggagcc aagcaugc 88
//
ID osa-MIR160b standard; RNA; OSA; 139 BP.
XX
AC MI0000664;
XX
DE Oryza sativa miR160b stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..50
FT /accession="MIMAT0000629"
FT /product="osa-miR160b-5p"
FT /evidence=not_experimental
FT /similarity="MI0000192"
FT miRNA 93..113
FT /accession="MIMAT0022852"
FT /product="osa-miR160b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 139 BP; 21 A; 33 C; 42 G; 0 T; 43 other;
aagguuuggu uuugaucggc uugagagcgu gccuggcucc cuguaugcca cucauguagc 60
ccaauccaug guguguuugg augcuguggg uggcgugcaa ggagccaagc augcgugcca 120
ugaucucucu uucugccuu 139
//
ID osa-MIR160c standard; RNA; OSA; 99 BP.
XX
AC MI0000665;
XX
DE Oryza sativa miR160c stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..27
FT /accession="MIMAT0000630"
FT /product="osa-miR160c-5p"
FT /evidence=not_experimental
FT /similarity="MI0000190"
FT miRNA 75..95
FT /accession="MIMAT0022853"
FT /product="osa-miR160c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 99 BP; 23 A; 26 C; 27 G; 0 T; 23 other;
ggaaugugcc uggcucccug uaugccacuc aucuagagca acaaacuucu gcgagagguu 60
gccuaugaug gauggcgugc acggagccaa gcauauucc 99
//
ID osa-MIR166a standard; RNA; OSA; 145 BP.
XX
AC MI0000670;
XX
DE Oryza sativa miR166a stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..42
FT /accession="MIMAT0022855"
FT /product="osa-miR166a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 110..130
FT /accession="MIMAT0000635"
FT /product="osa-miR166a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000201"
XX
SQ Sequence 145 BP; 26 A; 32 C; 36 G; 0 T; 51 other;
ugaagcuauu ugcuucugag uggaauguug ucugguucaa ggucucaugc accuugcggu 60
uuugaggaug auuugugcaa gguuuuucau uccucucauc cgugggaucu cggaccaggc 120
uucauucccc ucagagauag cuuca 145
//
ID osa-MIR166b standard; RNA; OSA; 206 BP.
XX
AC MI0000671;
XX
DE Oryza sativa miR166b stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..42
FT /accession="MIMAT0022856"
FT /product="osa-miR166b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 168..188
FT /accession="MIMAT0000636"
FT /product="osa-miR166b-3p"
FT /evidence=not_experimental
FT /similarity="MI0000201"
XX
SQ Sequence 206 BP; 47 A; 46 C; 43 G; 0 T; 70 other;
gggagccuuu ucauuuugag gggaauguug ucuggcucgg ggcuacuuuu aauuucucuc 60
ucuuuugaua ucuucuuuuc ucgaucuccu agcuugaucu uuugaucucu caaaucgauc 120
uuaagaaaaa gaucagucaa agagaugaga guagaugucu guagaucucg gaccaggcuu 180
cauucccccc aaacagaagg gcuccc 206
//
ID osa-MIR166c standard; RNA; OSA; 125 BP.
XX
AC MI0000672;
XX
DE Oryza sativa miR166c stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..31
FT /accession="MIMAT0022857"
FT /product="osa-miR166c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 91..111
FT /accession="MIMAT0000637"
FT /product="osa-miR166c-3p"
FT /evidence=not_experimental
FT /similarity="MI0000204"
XX
SQ Sequence 125 BP; 26 A; 31 C; 41 G; 0 T; 27 other;
ggcaguugag gggaauguug ucugguccga gaccuaacac cgggcggaau ggcggauuca 60
gcugcagcua agcaagcuag gugggggguu ucggaccagg cuucauuccc cccaacucaa 120
cuguu 125
//
ID osa-MIR166d standard; RNA; OSA; 125 BP.
XX
AC MI0000673;
XX
DE Oryza sativa miR166d stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0022858"
FT /product="osa-miR166d-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 91..111
FT /accession="MIMAT0000638"
FT /product="osa-miR166d-3p"
FT /evidence=not_experimental
FT /similarity="MI0000207"
XX
SQ Sequence 125 BP; 28 A; 28 C; 33 G; 0 T; 36 other;
gaagcuuuuu cacuuugagg ggaauguugu cuggcucgag gugcauggag aaaccucuga 60
ucgaucaggu uugaucugua gagacugauc ucggaccagg cuucauuccc cucaaguaaa 120
gcucc 125
//
ID osa-MIR167a standard; RNA; OSA; 141 BP.
XX
AC MI0000676;
XX
DE Oryza sativa miR167a stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 18312648.
RA Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK;
RT "Identification of novel and candidate miRNAs in rice by high throughput
RT sequencing";
RL BMC Plant Biol. 8:25(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0000641"
FT /product="osa-miR167a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000208"
FT miRNA 110..131
FT /accession="MIMAT0006780"
FT /product="osa-miR167a-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 141 BP; 35 A; 29 C; 33 G; 0 T; 44 other;
uagugugaau gagugaagcu gccagcauga ucuagcucug auuaaucggc acuguuggcg 60
uacagucgau ugacuaaucg ucagaucugu guguguaaau cacuguuaga ucaugcauga 120
cagccucauu ucuucacacu g 141
//
ID hsa-mir-155 standard; RNA; HSA; 65 BP.
XX
AC MI0000681;
XX
DE Homo sapiens miR-155 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 15738415.
RA Eis PS, Tam W, Sun L, Chadburn A, Li Z, Gomez MF, Lund E, Dahlberg JE;
RT "Accumulation of miR-155 and BIC RNA in human B cell lymphomas";
RL Proc Natl Acad Sci U S A. 102:3627-3632(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [7]
RX PUBMED; 17989717.
RA Marton S, Garcia MR, Robello C, Persson H, Trajtenberg F, Pritsch O,
RA Rovira C, Naya H, Dighiero G, Cayota A;
RT "Small RNAs analysis in CLL reveals a deregulation of miRNA expression and
RT novel miRNA candidates of putative relevance in CLL pathogenesis";
RL Leukemia. 22:330-338(2008).
XX
DR MIR; MI0000177; mmu-mir-155.
DR TARGETS:PICTAR-VERT; hsa-miR-155; hsa-miR-155.
DR HGNC; 31542; MIR155.
DR ENTREZGENE; 406947; MIR155.
XX
CC Human mir-155 is predicted based on homology to a cloned miR from mouse
CC (MIR:MI0000177) [1], and later experimentally validated in human HL-60
CC leukemia cells [2]. Like the mouse miRNA, human mir-155 resides in the
CC non-coding BIC transcript (EMBL:AF402776), located on chromosome 21 [3].
CC The mature form differs from that in mouse at a single position. Eis et
CC al. confirm that miR-155 is processed from the BIC transcript in human,
CC and demonstrate elevated expression of miR-155 in lymphoma samples [4].
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [5].
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..27
FT /accession="MIMAT0000646"
FT /product="hsa-miR-155-5p"
FT /evidence=experimental
FT /experiment="cloned [2,5-7]"
FT /similarity="MI0000177"
FT miRNA 43..64
FT /accession="MIMAT0004658"
FT /product="hsa-miR-155-3p"
FT /evidence=experimental
FT /experiment="cloned [5]"
XX
SQ Sequence 65 BP; 17 A; 14 C; 12 G; 0 T; 22 other;
cuguuaaugc uaaucgugau agggguuuuu gccuccaacu gacuccuaca uauuagcauu 60
aacag 65
//
ID hsa-mir-181b-2 standard; RNA; HSA; 89 BP.
XX
AC MI0000683;
XX
DE Homo sapiens miR-181b-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR RFAM; RF00076; mir-181.
DR TARGETS:PICTAR-VERT; hsa-miR-181b; hsa-miR-181b.
DR HGNC; 31551; MIR181B2.
DR ENTREZGENE; 406956; MIR181B2.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. Its
CC expression was later verified in human BC-1 cells [3]. There are two
CC predicted hairpin precursor sequences in the human genome; mir-181b-1
CC (MIR:MI0000270) is found on chromosome 1 [1], and mir-181b-2
CC (MIR:MI0000683) on chromosome 9 [2]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000257"
FT /product="hsa-miR-181b-5p"
FT /evidence=experimental
FT /experiment="cloned [3-5]"
FT /similarity="MI0001367"
FT miRNA 54..73
FT /accession="MIMAT0031893"
FT /product="hsa-miR-181b-2-3p"
FT /evidence=not_experimental
XX
SQ Sequence 89 BP; 25 A; 21 C; 20 G; 0 T; 23 other;
cugauggcug cacucaacau ucauugcugu cgguggguuu gagucugaau caacucacug 60
aucaaugaau gcaaacugcg gaccaaaca 89
//
ID mmu-mir-107 standard; RNA; MMU; 87 BP.
XX
AC MI0000684;
XX
DE Mus musculus miR-107 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MIR; MI0000114; hsa-mir-107.
DR MGI; 3619063; Mir107.
DR ENTREZGENE; 723826; Mir107.
XX
CC Mouse mir-107 is predicted [2] based on homology to a cloned miR from
CC human (MIR:MI0000114) [1], and later verified in mouse [3,4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0017048"
FT /product="mmu-miR-107-5p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
FT miRNA 52..74
FT /accession="MIMAT0000647"
FT /product="mmu-miR-107-3p"
FT /evidence=experimental
FT /experiment="cloned [3-4], Illumina [5,7]"
FT /similarity="MI0000114"
XX
SQ Sequence 87 BP; 19 A; 19 C; 22 G; 0 T; 27 other;
uucucugugc uuucagcuuc uuuacagugu ugccuugugg cauggaguuc aagcagcauu 60
guacagggcu aucaaagcac agagagc 87
//
ID mmu-mir-10a standard; RNA; MMU; 110 BP.
XX
AC MI0000685;
XX
DE Mus musculus miR-10a stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00104; mir-10.
DR MGI; 3619064; Mir10a.
DR ENTREZGENE; 723893; Mir10a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0000648"
FT /product="mmu-miR-10a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0001363"
FT miRNA 63..84
FT /accession="MIMAT0004659"
FT /product="mmu-miR-10a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 110 BP; 29 A; 21 C; 23 G; 0 T; 37 other;
gaccugucug ucuucuguau auacccugua gauccgaauu uguguaagga auuuuguggu 60
cacaaauucg uaucuagggg aauauguagu ugacauaaac acuccgcuca 110
//
ID mmu-mir-17 standard; RNA; MMU; 84 BP.
XX
AC MI0000687;
XX
DE Mus musculus miR-17 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00051; mir-17.
DR MGI; 3619065; Mir17.
DR ENTREZGENE; 723905; Mir17.
XX
CC Mouse mir-17 is predicted [4] based on homology to a cloned miR from human
CC (MIR:MI0000071) [1,2]. miRNAs derived from the 5' [1] and 3' [2] arms of
CC the human mir-17 precursor have been reported. Landgraf et al. show that
CC the 5' product is the predominant one [5]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [5].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0000649"
FT /product="mmu-miR-17-5p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
FT /similarity="MI0000071"
FT miRNA 51..72
FT /accession="MIMAT0000650"
FT /product="mmu-miR-17-3p"
FT /evidence=experimental
FT /experiment="cloned [3,5], Illumina [6-7]"
FT /similarity="MI0000071"
XX
SQ Sequence 84 BP; 22 A; 14 C; 24 G; 0 T; 24 other;
gucagaauaa ugucaaagug cuuacagugc agguagugau gugugcaucu acugcaguga 60
gggcacuugu agcauuaugc ugac 84
//
ID mmu-mir-19a standard; RNA; MMU; 82 BP.
XX
AC MI0000688;
XX
DE Mus musculus miR-19a stem-loop
XX
RN [1]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618743; Mir19a.
DR ENTREZGENE; 723891; Mir19a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0004660"
FT /product="mmu-miR-19a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 49..71
FT /accession="MIMAT0000651"
FT /product="mmu-miR-19a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 82 BP; 22 A; 16 C; 20 G; 0 T; 24 other;
gcagcccucu guuaguuuug cauaguugca cuacaagaag aauguaguug ugcaaaucua 60
ugcaaaacug augguggccu gc 82
//
ID mmu-mir-25 standard; RNA; MMU; 84 BP.
XX
AC MI0000689;
XX
DE Mus musculus miR-25 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619266; Mir25.
DR ENTREZGENE; 723926; Mir25.
XX
CC Mouse mir-25 is predicted [3] based on homology to a cloned miR from human
CC (MIR:MI0000082) [1]. Its expression has been later independently verified
CC in mouse [2,4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0017049"
FT /product="mmu-miR-25-5p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
FT miRNA 52..73
FT /accession="MIMAT0000652"
FT /product="mmu-miR-25-3p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [5,7]"
FT /similarity="MI0000082"
XX
SQ Sequence 84 BP; 12 A; 22 C; 31 G; 0 T; 19 other;
ggccaguguu gagaggcgga gacuugggca auugcuggac gcugcccugg gcauugcacu 60
ugucucgguc ugacagugcc ggcc 84
//
ID mmu-mir-28a standard; RNA; MMU; 86 BP.
XX
AC MI0000690;
XX
DE Mus musculus miR-28 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619267; Mir28.
DR ENTREZGENE; 723830; Mir28.
XX
CC Mouse mir-28 is predicted [2] based on homology to a cloned miR from human
CC (MIR:MI0000086) [1]. Its expression was later verified by cloning [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000653"
FT /product="mmu-miR-28a-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0000086"
FT miRNA 54..75
FT /accession="MIMAT0004661"
FT /product="mmu-miR-28a-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 86 BP; 16 A; 23 C; 22 G; 0 T; 25 other;
ggucccuacc uucaaggagc ucacagucua uugaguugcc uuucugauuc ucccacuaga 60
uugugagcug cuggagggca ggcacu 86
//
ID mmu-mir-32 standard; RNA; MMU; 70 BP.
XX
AC MI0000691;
XX
DE Mus musculus miR-32 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619331; Mir32.
DR ENTREZGENE; 723837; Mir32.
XX
CC Mouse mir-32 is predicted [3] based on homology to a cloned miR from human
CC (MIR:MI0000090) [1]. Its expression in mouse was later independently
CC verified [2]. The mature sequence shown here represents the most commonly
CC cloned form from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000654"
FT /product="mmu-miR-32-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [5,7]"
FT /similarity="MI0000090"
FT miRNA 47..67
FT /accession="MIMAT0017050"
FT /product="mmu-miR-32-3p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
XX
SQ Sequence 70 BP; 17 A; 11 C; 16 G; 0 T; 26 other;
ggagauauug cacauuacua aguugcaugu ugucacggcc ucaaugcaau uuagugugug 60
ugauauuuuc 70
//
ID mmu-mir-100 standard; RNA; MMU; 80 BP.
XX
AC MI0000692;
XX
DE Mus musculus miR-100 stem-loop
XX
RN [1]
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619057; Mir100.
DR ENTREZGENE; 723892; Mir100.
XX
CC Mouse mir-100 is predicted [2] based on homology to a cloned miR from
CC human (MIR:MI0000102) [1]. Its expression was later verified in mouse
CC [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0000655"
FT /product="mmu-miR-100-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4,6]"
FT /similarity="MI0000102"
FT miRNA 47..68
FT /accession="MIMAT0017051"
FT /product="mmu-miR-100-3p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
XX
SQ Sequence 80 BP; 17 A; 19 C; 19 G; 0 T; 25 other;
ccuguugcca caaacccgua gauccgaacu ugugcugauu cugcacacaa gcuugugucu 60
auagguaugu gucuguuagg 80
//
ID mmu-mir-139 standard; RNA; MMU; 68 BP.
XX
AC MI0000693;
XX
DE Mus musculus miR-139 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676824; Mir139.
DR ENTREZGENE; 387157; Mir139.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000656"
FT /product="mmu-miR-139-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 43..64
FT /accession="MIMAT0004662"
FT /product="mmu-miR-139-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 68 BP; 11 A; 16 C; 24 G; 0 T; 17 other;
guguauucua cagugcacgu gucuccagug uggcucggag gcuggagacg cggcccuguu 60
ggaguaac 68
//
ID mmu-mir-200c standard; RNA; MMU; 69 BP.
XX
AC MI0000694;
XX
DE Mus musculus miR-200c stem-loop
XX
RN [1]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618750; Mir200c.
DR ENTREZGENE; 723944; Mir200c.
XX
CC Mouse mir-200c is predicted [3] based on homology to a cloned miR from
CC human (MIR:MI0000650) [1]. Its expression in mouse was later verified
CC independently [2,4]. The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0004663"
FT /product="mmu-miR-200c-5p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
FT miRNA 45..67
FT /accession="MIMAT0000657"
FT /product="mmu-miR-200c-3p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [5-6]"
FT /similarity="MI0000650"
XX
SQ Sequence 69 BP; 11 A; 15 C; 23 G; 0 T; 20 other;
cccucgucuu acccagcagu guuugggugc ugguugggag ucucuaauac ugccggguaa 60
ugauggagg 69
//
ID mmu-mir-210 standard; RNA; MMU; 110 BP.
XX
AC MI0000695;
XX
DE Mus musculus miR-210 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676886; Mir210.
DR ENTREZGENE; 387206; Mir210.
XX
CC Mouse mir-210 is predicted [3] based on homology to a reported miR from
CC human (MIR:MI0000286) [1]. Its expression in mouse was later verified
CC independently [2,4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..49
FT /accession="MIMAT0017052"
FT /product="mmu-miR-210-5p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
FT miRNA 66..87
FT /accession="MIMAT0000658"
FT /product="mmu-miR-210-3p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [5,7]"
FT /similarity="MI0001379"
XX
SQ Sequence 110 BP; 17 A; 43 C; 33 G; 0 T; 17 other;
ccggggcagu cccuccaggc ucaggacagc cacugcccac cgcacacugc guugcuccgg 60
acccacugug cgugugacag cggcugaucu gucccugggc agcgcgaacc 110
//
ID mmu-mir-212 standard; RNA; MMU; 91 BP.
XX
AC MI0000696;
XX
DE Mus musculus miR-212 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676888; Mir212.
DR ENTREZGENE; 387208; Mir212.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0017053"
FT /product="mmu-miR-212-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 56..77
FT /accession="MIMAT0000659"
FT /product="mmu-miR-212-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0003385"
XX
SQ Sequence 91 BP; 13 A; 37 C; 26 G; 0 T; 15 other;
gggcagcgcg ccggcaccuu ggcucuagac ugcuuacugc ccgggccgcc uucaguaaca 60
gucuccaguc acggccaccg acgccuggcc c 91
//
ID mmu-mir-181a-1 standard; RNA; MMU; 87 BP.
XX
AC MI0000697;
XX
DE Mus musculus miR-181a-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629589; Mir181a-1.
DR ENTREZGENE; 735252; Mir181a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0000210"
FT /product="mmu-miR-181a-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [5-6]"
FT /similarity="MI0000223"
FT miRNA 54..75
FT /accession="MIMAT0000660"
FT /product="mmu-miR-181a-1-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [5-6]"
FT /similarity="MI0001380"
XX
SQ Sequence 87 BP; 25 A; 19 C; 18 G; 0 T; 25 other;
gguugcuuca gugaacauuc aacgcugucg gugaguuugg aauucaaaua aaaaccaucg 60
accguugauu guacccuaua gcuaacc 87
//
ID mmu-mir-214 standard; RNA; MMU; 110 BP.
XX
AC MI0000698;
XX
DE Mus musculus miR-214 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676890; Mir214.
DR ENTREZGENE; 387210; Mir214.
XX
CC Mouse mir-214 is predicted [2] based on homology to a reported miR from
CC human (MIR:MI0000290) [1]. Its expression was later verified by cloning
CC [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..51
FT /accession="MIMAT0004664"
FT /product="mmu-miR-214-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT miRNA 71..92
FT /accession="MIMAT0000661"
FT /product="mmu-miR-214-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0001381"
XX
SQ Sequence 110 BP; 25 A; 34 C; 28 G; 0 T; 23 other;
ggccuggcug gacagaguug ucaugugucu gccugucuac acuugcugug cagaacaucc 60
gcucaccugu acagcaggca cagacaggca gucacaugac aacccagccu 110
//
ID mmu-mir-216a standard; RNA; MMU; 72 BP.
XX
AC MI0000699;
XX
DE Mus musculus miR-216a stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676892; Mir216a.
DR ENTREZGENE; 387212; Mir216a.
XX
CC Mouse mir-216 is predicted [2] based on homology to a reported miR from
CC human (MIR:MI0000292) [1]. Its expression was later verified by cloning
CC [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000662"
FT /product="mmu-miR-216a-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4]"
FT /similarity="MI0001382"
FT miRNA 47..68
FT /accession="MIMAT0017054"
FT /product="mmu-miR-216a-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 72 BP; 15 A; 16 C; 16 G; 0 T; 25 other;
uugguuuaau cucagcuggc aacugugaga ugucccuauc auuccucaca guggucucug 60
ggauuaugcu aa 72
//
ID mmu-mir-218-1 standard; RNA; MMU; 110 BP.
XX
AC MI0000700;
XX
DE Mus musculus miR-218-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618751; Mir218-1.
DR ENTREZGENE; 723822; Mir218-1.
XX
CC Mouse miR-218 is predicted [2] based on homology to a reported miR from
CC human (MIR:MI0000294) [1]. Its expression was later verified by cloning
CC [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0000663"
FT /product="mmu-miR-218-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0000958"
FT miRNA 64..85
FT /accession="MIMAT0004665"
FT /product="mmu-miR-218-1-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 110 BP; 29 A; 22 C; 28 G; 0 T; 31 other;
gugauaaugg agcgagauuu ucuguugugc uugaucuaac caugugcuug cgagguauga 60
gaaaaacaug guuccgucaa gcaccaugga acgucacgca gcuuucuaca 110
//
ID mmu-mir-218-2 standard; RNA; MMU; 110 BP.
XX
AC MI0000701;
XX
DE Mus musculus miR-218-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618752; Mir218-2.
DR ENTREZGENE; 723924; Mir218-2.
XX
CC Mouse miR-218 is predicted [2] based on homology to a reported miR from
CC human (MIR:MI0000295) [1]. Its expression was later verified by cloning
CC [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0000663"
FT /product="mmu-miR-218-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0000957"
FT miRNA 67..88
FT /accession="MIMAT0005444"
FT /product="mmu-miR-218-2-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 110 BP; 23 A; 29 C; 31 G; 0 T; 27 other;
gaccaguugc cgcggggcuu uccuuugugc uugaucuaac cauguggugg aacgauggaa 60
acggaacaug guucugucaa gcaccgcgga aagcaucgcu cucuccugca 110
//
ID mmu-mir-219a-1 standard; RNA; MMU; 110 BP.
XX
AC MI0000702;
XX
DE Mus musculus miR-219a-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618753; Mir219-1.
DR ENTREZGENE; 723823; Mir219-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0000664"
FT /product="mmu-miR-219a-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0001384"
FT miRNA 62..83
FT /accession="MIMAT0017055"
FT /product="mmu-miR-219a-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 110 BP; 15 A; 42 C; 34 G; 0 T; 19 other;
ccgucccggg ccgcggcucc ugauugucca aacgcaauuc ucgagucucu ggcuccggcc 60
gagaguugcg ucuggacguc ccgagccgcc gcccccaaac cucgaggggg 110
//
ID mmu-mir-223 standard; RNA; MMU; 110 BP.
XX
AC MI0000703;
XX
DE Mus musculus miR-223 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2684360; Mir223.
DR ENTREZGENE; 723814; Mir223.
XX
CC Mouse mir-223 is predicted [2] based on homology to a reported miR from
CC human (MIR:MI0000300) [1]. Its expression was later verified by cloning
CC [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..48
FT /accession="MIMAT0017056"
FT /product="mmu-miR-223-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 68..89
FT /accession="MIMAT0000665"
FT /product="mmu-miR-223-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0001389"
XX
SQ Sequence 110 BP; 22 A; 26 C; 29 G; 0 T; 33 other;
ucuggccauc ugcaguguca cgcuccgugu auuugacaag cugaguugga cacucugugu 60
gguagagugu caguuuguca aauaccccaa guguggcuca ugccuaucag 110
//
ID mmu-mir-320 standard; RNA; MMU; 82 BP.
XX
AC MI0000704;
XX
DE Mus musculus miR-320 stem-loop
XX
RN [1]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619332; Mir320.
DR ENTREZGENE; 723838; Mir320.
XX
CC Mouse mir-320 is predicted [2] based on homology to a cloned miR from
CC human (MIR:MI0000542) [1]. Its expression was later verified in mouse
CC [3]. The mature sequence shown here represents the most commonly cloned
CC form from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0017057"
FT /product="mmu-miR-320-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 48..69
FT /accession="MIMAT0000666"
FT /product="mmu-miR-320-3p"
FT /evidence=experimental
FT /experiment="cloned [3-4], Illumina [5-6]"
FT /similarity="MI0000542"
XX
SQ Sequence 82 BP; 13 A; 24 C; 28 G; 0 T; 17 other;
gccucgccgc ccuccgccuu cucuucccgg uucuucccgg agucgggaaa agcuggguug 60
agagggcgaa aaaggaugug gg 82
//
ID mmu-mir-26a-2 standard; RNA; MMU; 84 BP.
XX
AC MI0000706;
XX
DE Mus musculus miR-26a-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [8]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619045; Mir26a-2.
DR ENTREZGENE; 723962; Mir26a-2.
XX
CC This sequence is a second predicted hairpin precursor for miR-26a
CC (MIR:MI0000573), conserved in human [3]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [5].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000533"
FT /product="mmu-miR-26a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4-5], Illumina [6,8]"
FT miRNA 52..73
FT /accession="MIMAT0017058"
FT /product="mmu-miR-26a-2-3p"
FT /evidence=experimental
FT /experiment="454 [7], Illumina [8]"
XX
SQ Sequence 84 BP; 14 A; 18 C; 27 G; 0 T; 25 other;
ggcugcggcu ggauucaagu aauccaggau aggcuguguc cguccaugag gccuguucuu 60
gauuacuugu uucuggaggc agcg 84
//
ID mmu-mir-33 standard; RNA; MMU; 69 BP.
XX
AC MI0000707;
XX
DE Mus musculus miR-33 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619343; Mir33.
DR ENTREZGENE; 723897; Mir33.
XX
CC Mouse mir-33 is predicted [2] based on homology to a cloned miR from human
CC (MIR:MI0000091) [1]. Its expression was later verified by cloning [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0000667"
FT /product="mmu-miR-33-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0000091"
FT miRNA 46..67
FT /accession="MIMAT0004666"
FT /product="mmu-miR-33-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 69 BP; 13 A; 15 C; 18 G; 0 T; 23 other;
cuguggugca uuguaguugc auugcauguu cuggcaauac cugugcaaug uuuccacagu 60
gcaucacgg 69
//
ID mmu-mir-211 standard; RNA; MMU; 106 BP.
XX
AC MI0000708;
XX
DE Mus musculus miR-211 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676887; Mir211.
DR ENTREZGENE; 387207; Mir211.
XX
CC Mouse mir-211 is predicted [2] based on homology to a reported miR from
CC human (MIR:MI0000287) [1]. Its expression has not been verified in mouse.
CC The mature miR differs from the human sequence at a single base. This
CC sequence maps to mouse chromosome 7.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..47
FT /accession="MIMAT0000668"
FT /product="mmu-miR-211-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT /similarity="MI0001377"
FT miRNA 63..83
FT /accession="MIMAT0017059"
FT /product="mmu-miR-211-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 106 BP; 18 A; 29 C; 32 G; 0 T; 27 other;
cugcuuggac cugugaccug ugggcuuccc uuugucaucc uuugccuagg ccucugagug 60
aggcaaggac agcaaagggg ggcucagugg ucaccucuac ugcaga 106
//
ID mmu-mir-221 standard; RNA; MMU; 95 BP.
XX
AC MI0000709;
XX
DE Mus musculus miR-221 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619066; Mir221.
DR ENTREZGENE; 723827; Mir221.
XX
CC Mouse mir-221 is predicted [2] based on homology to a reported miR from
CC human (MIR:MI0000298) [1]. Its expression was later verified by cloning
CC [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..45
FT /accession="MIMAT0017060"
FT /product="mmu-miR-221-5p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
FT miRNA 60..82
FT /accession="MIMAT0000669"
FT /product="mmu-miR-221-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4,6]"
FT /similarity="MI0000961"
XX
SQ Sequence 95 BP; 21 A; 19 C; 26 G; 0 T; 29 other;
auccaggucu ggggcaugaa ccuggcauac aauguagauu ucuguguuug uuaggcaaca 60
gcuacauugu cugcuggguu ucaggcuacc uggaa 95
//
ID mmu-mir-222 standard; RNA; MMU; 79 BP.
XX
AC MI0000710;
XX
DE Mus musculus miR-222 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619118; Mir222.
DR ENTREZGENE; 723828; Mir222.
XX
CC Mouse mir-222 is predicted [2] based on homology to a reported miR from
CC human (MIR:MI0000299) [1]. Its expression was later verified in mouse by
CC cloning [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0017061"
FT /product="mmu-miR-222-5p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
FT miRNA 49..71
FT /accession="MIMAT0000670"
FT /product="mmu-miR-222-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4,6]"
FT /similarity="MI0000299"
XX
SQ Sequence 79 BP; 13 A; 21 C; 22 G; 0 T; 23 other;
cccucagugg cucaguagcc aguguagauc cugucuuugg uaaucagcag cuacaucugg 60
cuacuggguc ucugguggc 79
//
ID mmu-mir-29b-2 standard; RNA; MMU; 81 BP.
XX
AC MI0000712;
XX
DE Mus musculus miR-29b-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [8]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00074; mir-29.
DR MGI; 3619047; Mir29b-2.
DR ENTREZGENE; 723963; Mir29b-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..35
FT /accession="MIMAT0017063"
FT /product="mmu-miR-29b-2-5p"
FT /evidence=experimental
FT /experiment="454 [7], Illumina [8]"
FT miRNA 52..74
FT /accession="MIMAT0000127"
FT /product="mmu-miR-29b-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3,5], Illumina [6,8]"
XX
SQ Sequence 81 BP; 17 A; 14 C; 18 G; 0 T; 32 other;
cuucuggaag cugguuucac augguggcuu agauuuuucc aucuuuguau cuagcaccau 60
uugaaaucag uguuuuagga g 81
//
ID mmu-mir-199a-2 standard; RNA; MMU; 110 BP.
XX
AC MI0000713;
XX
DE Mus musculus miR-199a-2 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [4]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618742; Mir199a-2.
DR ENTREZGENE; 723821; Mir199a-2.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [5]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..53
FT /accession="MIMAT0000229"
FT /product="mmu-miR-199a-5p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
FT /similarity="MI0000281"
FT miRNA 70..91
FT /accession="MIMAT0000230"
FT /product="mmu-miR-199a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,5], Illumina [6-7]"
XX
SQ Sequence 110 BP; 24 A; 29 C; 31 G; 0 T; 26 other;
uggaagcuuc aggagauccu gcuccgucgc cccaguguuc agacuaccug uucaggacaa 60
ugccguugua caguagucug cacauugguu agacugggca agggccagca 110
//
ID mmu-mir-199b standard; RNA; MMU; 110 BP.
XX
AC MI0000714;
XX
DE Mus musculus miR-199b stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676865; Mir199b.
DR ENTREZGENE; 387239; Mir199b.
XX
CC Mouse miR-199b is predicted based on homology with the previously
CC identified human miR-199b (MIR:MI0000282) [1,2]. Landgraf et al. later
CC showed that the 3' product is the predominant one [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..48
FT /accession="MIMAT0000672"
FT /product="mmu-miR-199b-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0000282"
FT miRNA 65..86
FT /accession="MIMAT0004667"
FT /product="mmu-miR-199b-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 110 BP; 23 A; 31 C; 27 G; 0 T; 29 other;
ccagaggaua ccuccacucc gucuacccag uguuuagacu accuguucag gacucccaaa 60
uuguacagua gucugcacau ugguuaggcu gggcuggguu agacccucgg 110
//
ID mmu-mir-135a-2 standard; RNA; MMU; 100 BP.
XX
AC MI0000715;
XX
DE Mus musculus miR-135a-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618729; Mir135a-2.
DR ENTREZGENE; 723955; Mir135a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0000147"
FT /product="mmu-miR-135a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Illumina [4-5]"
FT miRNA 62..82
FT /accession="MIMAT0017064"
FT /product="mmu-miR-135a-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 100 BP; 32 A; 14 C; 19 G; 0 T; 35 other;
agauaaauuc acucuagugc uuuauggcuu uuuauuccua ugugaucgua auaaagucuc 60
auguagggau ggaagccaug aaauacauug ugaaaauuca 100
//
ID mmu-mir-124-1 standard; RNA; MMU; 85 BP.
XX
AC MI0000716;
XX
DE Mus musculus miR-124-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676807; Mirn124a-1.
DR ENTREZGENE; 387233; Mir124a-1.
XX
CC miR-124 was cloned from mouse brain [1] and embryonic stem cells [2] by
CC independent groups. There are 3 predicted precursor hairpin sequences:
CC mir-124-1 (MIR:MI0000716) on chromosome 14, mir-124-2 (MIR:MI0000717) on
CC chromosome 3, and mir-124-3 (previously known as miR-124 here,
CC MIR:MI0000150) on chromosome 2. All have closely related predicted human
CC homologues (MIR:MI0000443, MIR:MI0000444 and MIR:MI0000445).
CC Lagos-Quintana et al. also report a mature miRNA sequence miR-124b, with a
CC G insertion at position 12 [1]. miR-124b is not found in either the mouse
CC or human genome assemblies.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0004527"
FT /product="mmu-miR-124-5p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
FT miRNA 53..72
FT /accession="MIMAT0000134"
FT /product="mmu-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
XX
SQ Sequence 85 BP; 21 A; 21 C; 22 G; 0 T; 21 other;
aggccucucu cuccguguuc acagcggacc uugauuuaaa uguccauaca auuaaggcac 60
gcggugaaug ccaagaaugg ggcug 85
//
ID mmu-mir-124-2 standard; RNA; MMU; 109 BP.
XX
AC MI0000717;
XX
DE Mus musculus miR-124-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618700; Mirn124a-2.
DR ENTREZGENE; 723950; Mir124a-2.
XX
CC miR-124 was cloned from mouse brain [1] and embryonic stem cells [2] by
CC independent groups. There are 3 predicted precursor hairpin sequences:
CC mir-124-1 (MIR:MI0000716) on chromosome 14, mir-124-2 (MIR:MI0000717) on
CC chromosome 3, and mir-124-3 (previously known as miR-124 here,
CC MIR:MI0000150) on chromosome 2. All have closely related predicted human
CC homologues (MIR:MI0000443, MIR:MI0000444 and MIR:MI0000445).
CC Lagos-Quintana et al. also report a mature miRNA sequence miR-124b, with a
CC G insertion at position 12 [1]. miR-124b is not found in either the mouse
CC or human genome assemblies.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0004527"
FT /product="mmu-miR-124-5p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
FT miRNA 62..81
FT /accession="MIMAT0000134"
FT /product="mmu-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
XX
SQ Sequence 109 BP; 30 A; 27 C; 27 G; 0 T; 25 other;
aucaagauca gagacucugc ucuccguguu cacagcggac cuugauuuaa ugucauacaa 60
uuaaggcacg cggugaaugc caagagcgga gccuacggcu gcacuugaa 109
//
ID mmu-mir-19b-1 standard; RNA; MMU; 87 BP.
XX
AC MI0000718;
XX
DE Mus musculus miR-19b-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [8]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629917; Mir19b-1.
DR ENTREZGENE; 751527; Mir19b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0017065"
FT /product="mmu-miR-19b-1-5p"
FT /evidence=experimental
FT /experiment="454 [7], Illumina [8]"
FT miRNA 54..76
FT /accession="MIMAT0000513"
FT /product="mmu-miR-19b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3,5], Northern [2], Illumina [6,8]"
XX
SQ Sequence 87 BP; 19 A; 16 C; 22 G; 0 T; 30 other;
cacuggucua ugguuaguuu ugcagguuug cauccagcug uauaauauuc ugcugugcaa 60
auccaugcaa aacugacugu gguggug 87
//
ID mmu-mir-92a-1 standard; RNA; MMU; 80 BP.
XX
AC MI0000719;
XX
DE Mus musculus miR-92a-1 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629918; Mirn92-1.
DR ENTREZGENE; 751549; Mir92-1.
XX
CC The predominant miR-92 form cloned by Landgraf et al. has a additional 3'
CC U residue, which is compatible with this precursor sequence, but not with
CC that of mir-92-2 (MIR:MI0000580) [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0017066"
FT /product="mmu-miR-92a-1-5p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
FT miRNA 50..70
FT /accession="MIMAT0000539"
FT /product="mmu-miR-92a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], Northern [1], Illumina [5,7]"
XX
SQ Sequence 80 BP; 10 A; 16 C; 22 G; 0 T; 32 other;
cuuucuacac agguugggau uugucgcaau gcuguguuuc ucuguauggu auugcacuug 60
ucccggccug uugaguuugg 80
//
ID mmu-mir-9-1 standard; RNA; MMU; 89 BP.
XX
AC MI0000720;
XX
DE Mus musculus miR-9-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676911; Mir9-1.
DR ENTREZGENE; 387133; Mir9-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000142"
FT /product="mmu-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4], Illumina [5-6]"
FT miRNA 55..76
FT /accession="MIMAT0000143"
FT /product="mmu-miR-9-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4], Illumina [5-6]"
XX
SQ Sequence 89 BP; 25 A; 13 C; 23 G; 0 T; 28 other;
cgggguuggu uguuaucuuu gguuaucuag cuguaugagu gguguggagu cuucauaaag 60
cuagauaacc gaaaguaaaa auaacccca 89
//
ID mmu-mir-9-3 standard; RNA; MMU; 90 BP.
XX
AC MI0000721;
XX
DE Mus musculus miR-9-3 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619443; Mir9-3.
DR ENTREZGENE; 723968; Mir9-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000142"
FT /product="mmu-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4], Illumina [5-6]"
FT miRNA 55..76
FT /accession="MIMAT0000143"
FT /product="mmu-miR-9-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4], Illumina [5-6]"
XX
SQ Sequence 90 BP; 25 A; 20 C; 21 G; 0 T; 24 other;
ggaggcccgu uucucucuuu gguuaucuag cuguaugagu gccacagagc cgucauaaag 60
cuagauaacc gaaaguagaa augacucuca 90
//
ID mmu-mir-138-1 standard; RNA; MMU; 99 BP.
XX
AC MI0000722;
XX
DE Mus musculus miR-138-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [4]
RX PUBMED; 16738409.
RA Obernosterer G, Leuschner PJ, Alenius M, Martinez J;
RT "Post-transcriptional regulation of microRNA expression";
RL RNA. 12:1161-1167(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676823; Mir138-1.
DR ENTREZGENE; 387156; Mir138-1.
XX
CC Mouse miR-138 was cloned from mouse brain tissue in [1]. There are 2
CC predicted hairpin precursor structures in the mouse genome, each has a
CC closely related human homologue [2]. mir-138-1 (MIR:MI0000722) is found
CC on mouse chromosome 8, and mir-138-2 (MIR:MI0000164, previously named
CC mir-138 here) on chromosome 9. Kim et al. and Obernosterer et al.
CC independently show that the mature product is a 23mer [3,4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0000150"
FT /product="mmu-miR-138-5p"
FT /evidence=experimental
FT /experiment="cloned [1,5], Illumina [6-7]"
FT miRNA 61..82
FT /accession="MIMAT0004668"
FT /product="mmu-miR-138-1-3p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
XX
SQ Sequence 99 BP; 24 A; 26 C; 28 G; 0 T; 21 other;
cucuagcaug guguuguggg acagcuggug uugugaauca ggccguugcc aaucagagaa 60
cggcuacuuc acaacaccag ggccacacug cacugcaag 99
//
ID mmu-mir-181b-1 standard; RNA; MMU; 80 BP.
XX
AC MI0000723;
XX
DE Mus musculus miR-181b-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618735; Mir181b-1.
DR ENTREZGENE; 723890; Mir181b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..35
FT /accession="MIMAT0000673"
FT /product="mmu-miR-181b-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4], Illumina [5,7]"
FT /similarity="MI0001366"
FT miRNA 52..72
FT /accession="MIMAT0017067"
FT /product="mmu-miR-181b-1-3p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
XX
SQ Sequence 80 BP; 24 A; 16 C; 20 G; 0 T; 20 other;
aggucacaau caacauucau ugcugucggu ggguugaacu guguagaaaa gcucacugaa 60
caaugaaugc aacuguggcc 80
//
ID mmu-mir-181c standard; RNA; MMU; 89 BP.
XX
AC MI0000724;
XX
DE Mus musculus miR-181c stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618737; Mir181c.
DR ENTREZGENE; 723819; Mir181c.
XX
CC Mouse miR-181c was predicted by computational methods using conservation
CC with human and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish and independently in mouse [2,3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000674"
FT /product="mmu-miR-181c-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [4,6]"
FT /similarity="MI0001380"
FT miRNA 56..77
FT /accession="MIMAT0017068"
FT /product="mmu-miR-181c-3p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
XX
SQ Sequence 89 BP; 20 A; 22 C; 30 G; 0 T; 17 other;
gccaaggguu ugggggaaca uucaaccugu cggugaguuu gggcagcuca gacaaaccau 60
cgaccguuga guggaccccg aggccugga 89
//
ID mmu-mir-125b-1 standard; RNA; MMU; 77 BP.
XX
AC MI0000725;
XX
DE Mus musculus miR-125b-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00052; lin-4.
DR MGI; 2676810; Mir125b-1.
DR ENTREZGENE; 387236; Mir125b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000136"
FT /product="mmu-miR-125b-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], Illumina [5-6]"
FT miRNA 55..76
FT /accession="MIMAT0004669"
FT /product="mmu-miR-125b-1-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 77 BP; 13 A; 22 C; 19 G; 0 T; 23 other;
ugcgcucccc ucagucccug agacccuaac uugugauguu uaccguuuaa auccacgggu 60
uaggcucuug ggagcug 77
//
ID mmu-mir-128-2 standard; RNA; MMU; 76 BP.
XX
AC MI0000726;
XX
DE Mus musculus miR-128-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618709; Mir128-2.
DR ENTREZGENE; 723815; Mir128-2.
XX
CC The most commonly cloned mature sequences derived from the previously
CC annotated mir-128a and mir-128b were shown by Landgraf et al to be
CC identical [3]. The sequences are therefore renamed mir-128-1 and
CC mir-128-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0017069"
FT /product="mmu-miR-128-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 48..68
FT /accession="MIMAT0000140"
FT /product="mmu-miR-128-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0000901"
XX
SQ Sequence 76 BP; 17 A; 17 C; 26 G; 0 T; 16 other;
cagugggaag gggggccgau gcacuguaag agagugagua gcaggucuca cagugaaccg 60
gucucuuucc cuacug 76
//
ID hsa-mir-128-2 standard; RNA; HSA; 84 BP.
XX
AC MI0000727;
XX
DE Homo sapiens miR-128-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-128b; hsa-miR-128b.
DR HGNC; 31511; MIR128-2.
DR ENTREZGENE; 406916; MIR128-2.
XX
CC The most commonly cloned mature sequences derived from the previously
CC annotated mir-128a and mir-128b were shown by Landgraf et al to be
CC identical [3]. The sequences are therefore renamed mir-128-1 and
CC mir-128-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0031095"
FT /product="hsa-miR-128-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 52..72
FT /accession="MIMAT0000424"
FT /product="hsa-miR-128-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4]"
FT /similarity="MI0000901"
XX
SQ Sequence 84 BP; 17 A; 19 C; 28 G; 0 T; 20 other;
ugugcagugg gaaggggggc cgauacacug uacgagagug aguagcaggu cucacaguga 60
accggucucu uucccuacug uguc 84
//
ID mmu-mir-7a-1 standard; RNA; MMU; 108 BP.
XX
AC MI0000728;
XX
DE Mus musculus miR-7a-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00053; mir-7.
DR MGI; 3619436; Mirn7-1.
DR ENTREZGENE; 723902; Mir7-1.
XX
CC miR-7a (previously named miR-7) was predicted by computational methods
CC using conservation between mouse, human and Fugu rubripes sequences [1].
CC Expression of the excised miR has been validated in zebrafish, and later
CC independently verified in mouse [2]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [4]. The ends of the miRNA may be offset with respect to previous
CC annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0000677"
FT /product="mmu-miR-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [5-6]"
FT /similarity="MI0000641"
FT miRNA 66..87
FT /accession="MIMAT0004670"
FT /product="mmu-miR-7a-1-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 108 BP; 30 A; 21 C; 24 G; 0 T; 33 other;
uuggauguug gccuaguucu guguggaaga cuagugauuu uguuguuuuu agauaacuaa 60
aacgacaaca aaucacaguc ugccauaugg cacaggccac cucuacag 108
//
ID mmu-mir-7a-2 standard; RNA; MMU; 97 BP.
XX
AC MI0000729;
XX
DE Mus musculus miR-7a-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00053; mir-7.
DR MGI; 3619437; Mirn7-2.
DR ENTREZGENE; 723884; Mir7-2.
XX
CC miR-7a (previously named miR-7) was predicted by computational methods
CC using conservation between mouse, human and Fugu rubripes sequences [1].
CC Expression of the excised miR has been validated in zebrafish, and later
CC independently verified in mouse [2]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [4]. The ends of the miRNA may be offset with respect to previous
CC annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0000677"
FT /product="mmu-miR-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [5-6]"
FT /similarity="MI0001361"
FT miRNA 59..80
FT /accession="MIMAT0017070"
FT /product="mmu-miR-7a-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
XX
SQ Sequence 97 BP; 18 A; 24 C; 25 G; 0 T; 30 other;
ggucgggcca gccccguuug gaagacuagu gauuuuguug uugugucucu guauccaaca 60
acaaguccca gucugccaca uggugcuggu cauuuca 97
//
ID mmu-mir-7b standard; RNA; MMU; 111 BP.
XX
AC MI0000730;
XX
DE Mus musculus miR-7b stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00053; mir-7.
DR MGI; 3619435; Mir7b.
DR ENTREZGENE; 723883; Mir7b.
XX
CC miR-7 was predicted by computational methods using conservation between
CC mouse, human and Fugu rubripes sequences [1]. Expression of the excised
CC miR has been validated in zebrafish, and the 5' end mapped by PCR. This
CC sequence represents the mouse homologue of human mir-7-3 -- the derived
CC mature form differs at a single position from that expressed from mir-7-1
CC (MIR:MI0000728) and mir-7-2 (MIR:MI0000729) in mouse, and mir-7-1
CC (MIR:MI0000263), mir-7-2 (MIR:MI0000264) and mir-7-3 (MIR:MI0000265) in
CC human.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..53
FT /accession="MIMAT0000678"
FT /product="mmu-miR-7b-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0000837"
FT miRNA 68..89
FT /accession="MIMAT0017071"
FT /product="mmu-miR-7b-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 111 BP; 28 A; 23 C; 29 G; 0 T; 31 other;
aggagcggag uacgugagcc agugcuaugu ggaagacuug ugauuuuguu guucugauau 60
gauaugacaa caagucacag ccagccucau agcguggacu ccuaucaccu u 111
//
ID mmu-mir-217 standard; RNA; MMU; 108 BP.
XX
AC MI0000731;
XX
DE Mus musculus miR-217 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676893; Mir217.
DR ENTREZGENE; 387213; Mir217.
XX
CC This miRNA was predicted by computational methods using conservation in
CC with human, mouse and Fugu rubripes [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. The
CC mature mouse and human (MIR:MI0000293) sequences differ at a single
CC position [2]. The mature sequence shown here represents the most commonly
CC cloned form from large-scale cloning studies in mouse [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 34..56
FT /accession="MIMAT0000679"
FT /product="mmu-miR-217-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4,6]"
FT /similarity="MI0001383"
FT miRNA 71..93
FT /accession="MIMAT0017072"
FT /product="mmu-miR-217-3p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
XX
SQ Sequence 108 BP; 35 A; 24 C; 17 G; 0 T; 32 other;
aaacauaguc auuacaguuu uugauguugc agauacugca ucaggaacug acuggauaag 60
acuuaauccc caucaguucc uaaugcauug ccuucagcau cuaaacaa 108
//
ID hsa-mir-194-2 standard; RNA; HSA; 85 BP.
XX
AC MI0000732;
XX
DE Homo sapiens miR-194-2 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-194; hsa-miR-194.
DR HGNC; 31565; MIR194-2.
DR ENTREZGENE; 406970; MIR194-2.
XX
CC This miRNA sequence was predicted based on homology to a verified miRNA
CC from mouse [1]. Michael et al. subsequently verified expression of
CC miR-194 in human [2]. Two putative pairs of orthologous hairpin
CC precursors structures are found in mouse (mir-194-1 (MIR:MI0000236) on
CC chromosome 1, and mir-194-2 (MIR:MI0000733) on chromosome 19) and human
CC (mir-194-1 (MIR:MI0000488) on chromosome 1, and mir-194-2 (MIR:MI0000732)
CC on chromosome 11).
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000460"
FT /product="hsa-miR-194-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT miRNA 51..72
FT /accession="MIMAT0004671"
FT /product="hsa-miR-194-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 85 BP; 13 A; 25 C; 28 G; 0 T; 19 other;
ugguucccgc ccccuguaac agcaacucca uguggaagug cccacugguu ccaguggggc 60
ugcuguuauc uggggcgagg gccag 85
//
ID mmu-mir-194-2 standard; RNA; MMU; 86 BP.
XX
AC MI0000733;
XX
DE Mus musculus miR-194-2 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618738; Mir194-2.
DR ENTREZGENE; 723957; Mir194-2.
XX
CC Lagos-Quintana cloned miR-194 from mouse kidney tissue [1]. Michael et
CC al. subsequently verified expression of miR-194 in human [2]. Two
CC putative pairs of orthologous hairpin precursors structures are found in
CC mouse (mir-194-1 (MIR:MI0000236) on chromosome 1, and mir-194-2
CC (MIR:MI0000733) on chromosome 19) and human (mir-194-1 (MIR:MI0000488) on
CC chromosome 1, and mir-194-2 (MIR:MI0000732) on chromosome 11).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000224"
FT /product="mmu-miR-194-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Illumina [4-5]"
FT miRNA 52..73
FT /accession="MIMAT0017073"
FT /product="mmu-miR-194-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 86 BP; 13 A; 24 C; 28 G; 0 T; 21 other;
guggcuccca cccucuguaa cagcaacucc auguggaagu gcccacuggu uccagugggg 60
cugcuguuau cugggguggc ggcuag 86
//
ID hsa-mir-106b standard; RNA; HSA; 82 BP.
XX
AC MI0000734;
XX
DE Homo sapiens miR-106b stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [4]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [7]
RX PUBMED; 18230126.
RA Afanasyeva EA, Hotz-Wagenblatt A, Glatting KH, Westermann F;
RT "New miRNAs cloned from neuroblastoma";
RL BMC Genomics. 9:52(2008).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-106b; hsa-miR-106b.
DR HGNC; 31495; MIR106B.
DR ENTREZGENE; 406900; MIR106B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0000680"
FT /product="hsa-miR-106b-5p"
FT /evidence=experimental
FT /experiment="cloned [3-6]"
FT /similarity="MI0000407"
FT miRNA 52..73
FT /accession="MIMAT0004672"
FT /product="hsa-miR-106b-3p"
FT /evidence=experimental
FT /experiment="cloned [5-7], Northern [7]"
XX
SQ Sequence 82 BP; 13 A; 24 C; 26 G; 0 T; 19 other;
ccugccgggg cuaaagugcu gacagugcag auaguggucc ucuccgugcu accgcacugu 60
ggguacuugc ugcuccagca gg 82
//
ID hsa-mir-29c standard; RNA; HSA; 88 BP.
XX
AC MI0000735;
XX
DE Homo sapiens miR-29c stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-29c; hsa-miR-29c.
DR HGNC; 31621; MIR29C.
DR ENTREZGENE; 407026; MIR29C.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0004673"
FT /product="hsa-miR-29c-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 54..75
FT /accession="MIMAT0000681"
FT /product="hsa-miR-29c-3p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
XX
SQ Sequence 88 BP; 18 A; 17 C; 22 G; 0 T; 31 other;
aucucuuaca caggcugacc gauuucuccu gguguucaga gucuguuuuu gucuagcacc 60
auuugaaauc gguuaugaug uaggggga 88
//
ID hsa-mir-30c-1 standard; RNA; HSA; 89 BP.
XX
AC MI0000736;
XX
DE Homo sapiens miR-30c-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-30c; hsa-miR-30c.
DR HGNC; 31626; MIR30C1.
DR ENTREZGENE; 407031; MIR30C1.
XX
CC miR-30c was cloned from mouse heart and brain tissues by Lagos-Quintana et
CC al. [1]. Two human hairpin precursor sequences are predicted based on
CC homology with the mouse sequences, on chromosomes 1 (MIR:MI0000736) and 6
CC (MIR:MI0000254) [3]. Expression of miR-30c was later validated in human
CC HL-60 leukemia cells [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0000244"
FT /product="hsa-miR-30c-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4-6]"
FT /similarity="MI0000547"
FT miRNA 56..77
FT /accession="MIMAT0004674"
FT /product="hsa-miR-30c-1-3p"
FT /evidence=experimental
FT /experiment="cloned [5]"
XX
SQ Sequence 89 BP; 18 A; 20 C; 25 G; 0 T; 26 other;
accaugcugu agugugugua aacauccuac acucucagcu gugagcucaa gguggcuggg 60
agaggguugu uuacuccuuc ugccaugga 89
//
ID hsa-mir-200a standard; RNA; HSA; 90 BP.
XX
AC MI0000737;
XX
DE Homo sapiens miR-200a stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-200a; hsa-miR-200a.
DR HGNC; 31578; MIR200A.
DR ENTREZGENE; 406983; MIR200A.
XX
CC miR-200a was cloned from mouse kidney tissue [1], and expression later
CC confirmed by cloning in human [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001620"
FT /product="hsa-miR-200a-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT miRNA 54..75
FT /accession="MIMAT0000682"
FT /product="hsa-miR-200a-3p"
FT /evidence=experimental
FT /experiment="cloned [3-5]"
FT /similarity="MI0000554"
XX
SQ Sequence 90 BP; 18 A; 27 C; 23 G; 0 T; 22 other;
ccgggccccu gugagcaucu uaccggacag ugcuggauuu cccagcuuga cucuaacacu 60
gucugguaac gauguucaaa ggugacccgc 90
//
ID hsa-mir-302a standard; RNA; HSA; 69 BP.
XX
AC MI0000738;
XX
DE Homo sapiens miR-302a stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-302a; hsa-miR-302a.
DR TARGETS:PICTAR-VERT; hsa-miR-302a*; hsa-miR-302a*.
DR HGNC; 31623; MIR302A.
DR ENTREZGENE; 407028; MIR302A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0000683"
FT /product="hsa-miR-302a-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Northern [2]"
FT miRNA 44..66
FT /accession="MIMAT0000684"
FT /product="hsa-miR-302a-3p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Northern [2]"
XX
SQ Sequence 69 BP; 19 A; 12 C; 16 G; 0 T; 22 other;
ccaccacuua aacguggaug uacuugcuuu gaaacuaaag aaguaagugc uuccauguuu 60
uggugaugg 69
//
ID hsa-mir-101-2 standard; RNA; HSA; 79 BP.
XX
AC MI0000739;
XX
DE Homo sapiens miR-101-2 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-101; hsa-miR-101.
DR HGNC; 31489; MIR101-2.
DR ENTREZGENE; 406894; MIR101-2.
XX
CC Reference [1] reports two miR-101 precursor hairpin structures in human,
CC on chromosome 1 (MIR:MI0000103) and 9 (MIR:MI0000739, named
CC mir-101-precursor-9 in [1]). The mature sequence shown here represents
CC the most commonly cloned form from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0037312"
FT /product="hsa-miR-101-2-5p"
FT /evidence=not_experimental
FT miRNA 49..69
FT /accession="MIMAT0000099"
FT /product="hsa-miR-101-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4]"
XX
SQ Sequence 79 BP; 20 A; 12 C; 20 G; 0 T; 27 other;
acuguccuuu uucgguuauc augguaccga ugcuguauau cugaaaggua caguacugug 60
auaacugaag aaugguggu 79
//
ID hsa-mir-219a-2 standard; RNA; HSA; 97 BP.
XX
AC MI0000740;
XX
DE Homo sapiens miR-219a-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-219; hsa-miR-219.
DR HGNC; 31598; MIR219-2.
DR ENTREZGENE; 407003; MIR219-2.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the 5' end mapped by PCR [2]. The
CC mature products were later verified in human [3]. Two hairpin precursor
CC structures are predicted, mir-219-1 on chromosome 6 (MIR:MI0000296) and
CC mir-219-2 on chromosome 9 (MIR:MI0000740) [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0000276"
FT /product="hsa-miR-219a-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0001385"
FT miRNA 62..83
FT /accession="MIMAT0004675"
FT /product="hsa-miR-219a-2-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 97 BP; 19 A; 26 C; 29 G; 0 T; 23 other;
acucaggggc uucgccacug auuguccaaa cgcaauucuu guacgagucu gcggccaacc 60
gagaauugug gcuggacauc uguggcugag cuccggg 97
//
ID mmu-mir-219a-2 standard; RNA; MMU; 97 BP.
XX
AC MI0000741;
XX
DE Mus musculus miR-219a-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618754; Mir219-2.
DR ENTREZGENE; 723904; Mir219-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0000664"
FT /product="mmu-miR-219a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3-4]"
FT /similarity="MI0001385"
FT miRNA 62..83
FT /accession="MIMAT0022841"
FT /product="mmu-miR-219a-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 97 BP; 19 A; 25 C; 29 G; 0 T; 24 other;
acucaggggc uucgccacug auuguccaaa cgcaauucuu guacgagucu gcggccaacc 60
gagaauugug gcuggacauc ugugguugag cuccggg 97
//
ID hsa-mir-34b standard; RNA; HSA; 84 BP.
XX
AC MI0000742;
XX
DE Homo sapiens miR-34b stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-34b; hsa-miR-34b.
DR HGNC; 31636; MIR34B.
DR ENTREZGENE; 407041; MIR34B.
XX
CC Houbaviy et al. cloned 3 closely related sequences from mouse embryonic
CC stem cells [1], and named them miR-34a, miR-34b and miR-172. These names
CC have been remapped to miR-34c (MIR:MI0000403), miR-34b (MIR:MI0000404) and
CC miR-34a (MIR:MI0000584) to clarify homology with human sequences. The
CC predominant mature miRNA in human is expressed from the 3' arm (in
CC contrast to previous annotation) [2]. Both arms express mature products
CC in mouse.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0000685"
FT /product="hsa-miR-34b-5p"
FT /evidence=not_experimental
FT /similarity="MI0000404"
FT miRNA 50..71
FT /accession="MIMAT0004676"
FT /product="hsa-miR-34b-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 84 BP; 21 A; 19 C; 20 G; 0 T; 24 other;
gugcucgguu uguaggcagu gucauuagcu gauuguacug uggugguuac aaucacuaac 60
uccacugcca ucaaaacaag gcac 84
//
ID hsa-mir-34c standard; RNA; HSA; 77 BP.
XX
AC MI0000743;
XX
DE Homo sapiens miR-34c stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-34c; hsa-miR-34c.
DR HGNC; 31637; MIR34C.
DR ENTREZGENE; 407042; MIR34C.
XX
CC Houbaviy et al. cloned 3 closely related sequences from mouse embryonic
CC stem cells [1], and named them miR-34a, miR-34b and miR-172. These names
CC have been remapped to miR-34c (MIR:MI0000403), miR-34b (MIR:MI0000404) and
CC miR-34a (MIR:MI0000584) to clarify homology with human sequences.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0000686"
FT /product="hsa-miR-34c-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000403"
FT miRNA 46..67
FT /accession="MIMAT0004677"
FT /product="hsa-miR-34c-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 77 BP; 26 A; 15 C; 16 G; 0 T; 20 other;
agucuaguua cuaggcagug uaguuagcug auugcuaaua guaccaauca cuaaccacac 60
ggccagguaa aaagauu 77
//
ID hsa-mir-299 standard; RNA; HSA; 63 BP.
XX
AC MI0000744;
XX
DE Homo sapiens miR-299 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 31618; MIR299.
DR ENTREZGENE; 407023; MIR299.
XX
CC The sequence from the 5' arm of this miRNA precursor is the predicted
CC human homologue of mouse miR-299, cloned from mouse embryonic stem cells
CC [1,2], later validated in human [4]. Altuvia et al [3] report the cloning
CC of a miRNA sequence from the 3' arm of the same precursor in human.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0002890"
FT /product="hsa-miR-299-5p"
FT /evidence=experimental
FT /experiment="cloned [4]"
FT /similarity="MI0000399"
FT miRNA 39..60
FT /accession="MIMAT0000687"
FT /product="hsa-miR-299-3p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
XX
SQ Sequence 63 BP; 18 A; 11 C; 13 G; 0 T; 21 other;
aagaaauggu uuaccguccc acauacauuu ugaauaugua ugugggaugg uaaaccgcuu 60
cuu 63
//
ID hsa-mir-301a standard; RNA; HSA; 86 BP.
XX
AC MI0000745;
XX
DE Homo sapiens miR-301a stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-301; hsa-miR-301.
DR HGNC; 31622; MIR301A.
DR ENTREZGENE; 407027; MIR301A.
XX
CC This sequence is the predicted human homologue of mouse miR-301, cloned
CC from mouse embryonic stem cells [1,3]. Its expression has also been
CC confirmed in human ES cells [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0022696"
FT /product="hsa-miR-301a-5p"
FT /evidence=not_experimental
FT miRNA 51..73
FT /accession="MIMAT0000688"
FT /product="hsa-miR-301a-3p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Northern [2]"
XX
SQ Sequence 86 BP; 26 A; 18 C; 17 G; 0 T; 25 other;
acugcuaacg aaugcucuga cuuuauugca cuacuguacu uuacagcuag cagugcaaua 60
guauugucaa agcaucugaa agcagg 86
//
ID hsa-mir-99b standard; RNA; HSA; 70 BP.
XX
AC MI0000746;
XX
DE Homo sapiens miR-99b stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-99b; hsa-miR-99b.
DR HGNC; 31651; MIR99B.
DR ENTREZGENE; 407056; MIR99B.
XX
CC This sequence is the predicted human homologue of mouse miR-99b, cloned
CC from mouse brain [1] and embryonic stem cells [2,3]. Its expression was
CC later validated in human [4-6].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000689"
FT /product="hsa-miR-99b-5p"
FT /evidence=experimental
FT /experiment="cloned [4-6]"
FT /similarity="MI0000147"
FT miRNA 45..66
FT /accession="MIMAT0004678"
FT /product="hsa-miR-99b-3p"
FT /evidence=experimental
FT /experiment="cloned [5]"
XX
SQ Sequence 70 BP; 10 A; 26 C; 21 G; 0 T; 13 other;
ggcacccacc cguagaaccg accuugcggg gccuucgccg cacacaagcu cgugucugug 60
gguccguguc 70
//
ID hsa-mir-296 standard; RNA; HSA; 80 BP.
XX
AC MI0000747;
XX
DE Homo sapiens miR-296 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-296; hsa-miR-296.
DR HGNC; 31617; MIR296.
DR ENTREZGENE; 407022; MIR296.
XX
CC This sequence is the predicted human homologue of mouse miR-296 cloned
CC from mouse embryonic stem cells [1,3]. Its expression has also been
CC verified in human ES cells [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0000690"
FT /product="hsa-miR-296-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4-5]"
FT miRNA 48..69
FT /accession="MIMAT0004679"
FT /product="hsa-miR-296-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 80 BP; 13 A; 24 C; 24 G; 0 T; 19 other;
aggacccuuc cagagggccc ccccucaauc cuguugugcc uaauucagag gguugggugg 60
aggcucuccu gaagggcucu 80
//
ID hsa-mir-130b standard; RNA; HSA; 82 BP.
XX
AC MI0000748;
XX
DE Homo sapiens miR-130b stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-130b; hsa-miR-130b.
DR HGNC; 31515; MIR130B.
DR ENTREZGENE; 406920; MIR130B.
XX
CC This sequence is the predicted human homologue of mouse miR-130b cloned
CC from mouse embryonic stem cells [1,2]. Its expression was later verified
CC in human BC-1 cells [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0004680"
FT /product="hsa-miR-130b-5p"
FT /evidence=experimental
FT /experiment="cloned [4-5]"
FT miRNA 51..72
FT /accession="MIMAT0000691"
FT /product="hsa-miR-130b-3p"
FT /evidence=experimental
FT /experiment="cloned [3-5]"
FT /similarity="MI0000408"
XX
SQ Sequence 82 BP; 17 A; 23 C; 24 G; 0 T; 18 other;
ggccugcccg acacucuuuc ccuguugcac uacuauaggc cgcugggaag cagugcaaug 60
augaaagggc aucggucagg uc 82
//
ID hsa-mir-30e standard; RNA; HSA; 92 BP.
XX
AC MI0000749;
XX
DE Homo sapiens miR-30e stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [4]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 31629; MIR30E.
DR ENTREZGENE; 407034; MIR30E.
XX
CC This sequence is the predicted human homologue of mouse miR-30e [1,2,4].
CC Mature products from both arms of the precursor (hsa-miR-30e-5p and
CC hsa-miR-30e-3p) were later independently verified in human myelocytic
CC leukemia (HL-60) cells [3]. Landgraf et al. later showed that the 5'
CC product is the predominant one [5]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [5].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000692"
FT /product="hsa-miR-30e-5p"
FT /evidence=experimental
FT /experiment="cloned [3,5-6]"
FT miRNA 59..80
FT /accession="MIMAT0000693"
FT /product="hsa-miR-30e-3p"
FT /evidence=experimental
FT /experiment="cloned [3,5]"
XX
SQ Sequence 92 BP; 20 A; 19 C; 28 G; 0 T; 25 other;
gggcagucuu ugcuacugua aacauccuug acuggaagcu guaagguguu cagaggagcu 60
uucagucgga uguuuacagc ggcaggcugc ca 92
//
ID hsa-mir-26a-2 standard; RNA; HSA; 84 BP.
XX
AC MI0000750;
XX
DE Homo sapiens miR-26a-2 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [4]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [5]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-26a; hsa-miR-26a.
DR HGNC; 31611; MIR26A2.
DR ENTREZGENE; 407016; MIR26A2.
XX
CC miR-26a was cloned from HeLa cells [1]. Two predicted hairpin precursor
CC sequences are present on chromosome 3 (MIR:MI0000083) and 12
CC (MIR:MI0000750), each with homologues in mouse (MIR:MI0000573 and
CC MIR:MI0000706). The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [6].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000082"
FT /product="hsa-miR-26a-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4-7], Northern [3]"
FT miRNA 52..73
FT /accession="MIMAT0004681"
FT /product="hsa-miR-26a-2-3p"
FT /evidence=experimental
FT /experiment="cloned [6]"
XX
SQ Sequence 84 BP; 15 A; 16 C; 24 G; 0 T; 29 other;
ggcuguggcu ggauucaagu aauccaggau aggcuguuuc caucugugag gccuauucuu 60
gauuacuugu uucuggaggc agcu 84
//
ID cel-mir-358 standard; RNA; CEL; 110 BP.
XX
AC MI0000757;
XX
DE Caenorhabditis elegans miR-358 stem-loop
XX
RN [1]
RX PUBMED; 15317971.
RA Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB;
RT "Patterns of flanking sequence conservation and a characteristic upstream
RT motif for microRNA gene identification";
RL RNA. 10:1309-1322(2004).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [5]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
CC This miRNA was predicted by computational analysis of C. elegans and C.
CC briggsae, and expression of the mature microRNA confirmed by PCR
CC amplification, cloning and sequencing [1]. The extents of the dominant
CC mature miRNA species are adjusted here in accordance with a large scale
CC cloning and sequencing study [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0015120"
FT /product="cel-miR-358-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [4], Illumina [5]"
FT miRNA 67..88
FT /accession="MIMAT0000700"
FT /product="cel-miR-358-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], PCR [1], Illumina [3,5],
FT CLIPseq [4]"
XX
SQ Sequence 110 BP; 27 A; 32 C; 23 G; 0 T; 28 other;
aaacucgcga cggcuggcga ccuggccagg cauuccaacu gucaaacuua caaagcuuuc 60
ucgacaauug guaucccugu caaggucuca auccguucag cgaauucguu 110
//
ID hsa-mir-361 standard; RNA; HSA; 72 BP.
XX
AC MI0000760;
XX
DE Homo sapiens miR-361 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 18230126.
RA Afanasyeva EA, Hotz-Wagenblatt A, Glatting KH, Westermann F;
RT "New miRNAs cloned from neuroblastoma";
RL BMC Genomics. 9:52(2008).
XX
DR HGNC; 31867; MIR361.
DR ENTREZGENE; 494323; MIR361.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000703"
FT /product="hsa-miR-361-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000761"
FT miRNA 45..67
FT /accession="MIMAT0004682"
FT /product="hsa-miR-361-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Northern [3]"
XX
SQ Sequence 72 BP; 18 A; 15 C; 15 G; 0 T; 24 other;
ggagcuuauc agaaucucca gggguacuuu auaauuucaa aaaguccccc aggugugauu 60
cugauuugcu uc 72
//
ID mmu-mir-361 standard; RNA; MMU; 70 BP.
XX
AC MI0000761;
XX
DE Mus musculus miR-361 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619368; Mir361.
DR ENTREZGENE; 723850; Mir361.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000704"
FT /product="mmu-miR-361-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3,5]"
FT miRNA 43..67
FT /accession="MIMAT0017075"
FT /product="mmu-miR-361-3p"
FT /evidence=experimental
FT /experiment="454 [4], Illumina [5]"
XX
SQ Sequence 70 BP; 17 A; 13 C; 16 G; 0 T; 24 other;
gaagcuuauc agaaucucca gggguacuua guauuugaaa agucccccag gugugauucu 60
gauuuguuuc 70
//
ID hsa-mir-362 standard; RNA; HSA; 65 BP.
XX
AC MI0000762;
XX
DE Homo sapiens miR-362 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32022; MIR362.
DR ENTREZGENE; 574030; MIR362.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..28
FT /accession="MIMAT0000705"
FT /product="hsa-miR-362-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2-3]"
FT miRNA 42..63
FT /accession="MIMAT0004683"
FT /product="hsa-miR-362-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 65 BP; 19 A; 14 C; 13 G; 0 T; 19 other;
cuugaauccu uggaaccuag gugugagugc uauuucagug caacacaccu auucaaggau 60
ucaaa 65
//
ID mmu-mir-362 standard; RNA; MMU; 65 BP.
XX
AC MI0000763;
XX
DE Mus musculus miR-362 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619369; Mir362.
DR ENTREZGENE; 723851; Mir362.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..28
FT /accession="MIMAT0000706"
FT /product="mmu-miR-362-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], MPSS [2], Illumina [4-5]"
FT miRNA 42..63
FT /accession="MIMAT0004684"
FT /product="mmu-miR-362-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 65 BP; 18 A; 16 C; 14 G; 0 T; 17 other;
cucgaauccu uggaaccuag gugugaaugc ugcuucagug caacacaccu guucaaggau 60
ucaaa 65
//
ID hsa-mir-363 standard; RNA; HSA; 75 BP.
XX
AC MI0000764;
XX
DE Homo sapiens miR-363 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32023; MIR363.
DR ENTREZGENE; 574031; MIR363.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0003385"
FT /product="hsa-miR-363-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT miRNA 50..71
FT /accession="MIMAT0000707"
FT /product="hsa-miR-363-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2-3]"
FT /similarity="MI0002067"
XX
SQ Sequence 75 BP; 22 A; 12 C; 19 G; 0 T; 22 other;
uguugucggg uggaucacga ugcaauuuug augaguauca uaggagaaaa auugcacggu 60
auccaucugu aaacc 75
//
ID mmu-mir-363 standard; RNA; MMU; 75 BP.
XX
AC MI0000765;
XX
DE Mus musculus miR-363 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619370; Mir363.
DR ENTREZGENE; 723852; Mir363.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0017076"
FT /product="mmu-miR-363-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 50..71
FT /accession="MIMAT0000708"
FT /product="mmu-miR-363-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT /similarity="MI0002067"
XX
SQ Sequence 75 BP; 22 A; 11 C; 20 G; 0 T; 22 other;
uguuaucagg uggaacacga ugcaauuuug guugguguaa uaggaggaaa auugcacggu 60
auccaucugu aaacc 75
//
ID hsa-mir-365a standard; RNA; HSA; 87 BP.
XX
AC MI0000767;
XX
DE Homo sapiens miR-365a stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 33692; MIR365-1.
DR ENTREZGENE; 100126355; MIR365-1.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR245.
CC The sequence is unrelated to C. elegans mir-245 (MIR:MI0000321).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0009199"
FT /product="hsa-miR-365a-5p"
FT /evidence=not_experimental
FT miRNA 56..77
FT /accession="MIMAT0000710"
FT /product="hsa-miR-365a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], array-cloned [2]"
XX
SQ Sequence 87 BP; 23 A; 20 C; 19 G; 0 T; 25 other;
accgcaggga aaaugaggga cuuuuggggg cagauguguu uccauuccac uaucauaaug 60
ccccuaaaaa uccuuauugc ucuugca 87
//
ID mmu-mir-365-1 standard; RNA; MMU; 87 BP.
XX
AC MI0000768;
XX
DE Mus musculus miR-365-1 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619371; Mir365-1.
DR ENTREZGENE; 723899; Mir365-1.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR245.
CC The sequence is unrelated to C. elegans mir-245 (MIR:MI0000321).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0017077"
FT /product="mmu-miR-365-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 56..77
FT /accession="MIMAT0000711"
FT /product="mmu-miR-365-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0000767"
XX
SQ Sequence 87 BP; 22 A; 20 C; 20 G; 0 T; 25 other;
accgcaggga aaaugaggga cuuuuggggg cagauguguu uccauuccgc uaucauaaug 60
ccccuaaaaa uccuuauugc ucuugca 87
//
ID hsa-mir-365b standard; RNA; HSA; 111 BP.
XX
AC MI0000769;
XX
DE Homo sapiens miR-365b stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [5]
RX PUBMED; 19144710.
RA Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G;
RT "Identification of novel Epstein-Barr virus microRNA genes from
RT nasopharyngeal carcinomas";
RL J Virol. 83:3333-3341(2009).
XX
DR HGNC; 33693; MIR365-2.
DR ENTREZGENE; 100126356; MIR365-2.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR190.
CC The sequence is unrelated to mammalian mir-190 (MIR:MI0000486).
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..50
FT /accession="MIMAT0022833"
FT /product="hsa-miR-365b-5p"
FT /evidence=experimental
FT /experiment="454 [5]"
FT miRNA 68..89
FT /accession="MIMAT0022834"
FT /product="hsa-miR-365b-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], array-cloned [2]"
XX
SQ Sequence 111 BP; 30 A; 21 C; 29 G; 0 T; 31 other;
agaguguuca aggacagcaa gaaaaaugag ggacuuucag gggcagcugu guuuucugac 60
ucagucauaa ugccccuaaa aauccuuauu guucuugcag ugugcaucgg g 111
//
ID hsa-mir-376c standard; RNA; HSA; 66 BP.
XX
AC MI0000776;
XX
DE Homo sapiens miR-376c stem-loop
XX
RN [1]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [2]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [3]
RX PUBMED; 17322061.
RA Kawahara Y, Zinshteyn B, Sethupathy P, Iizasa H, Hatzigeorgiou AG,
RA Nishikura K;
RT "Redirection of silencing targets by adenosine-to-inosine editing of
RT miRNAs";
RL Science. 315:1137-1140(2007).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 22282338.
RA Voellenkle C, Rooij Jv, Guffanti A, Brini E, Fasanaro P, Isaia E, Croft L,
RA David M, Capogrossi MC, Moles A, Felsani A, Martelli F;
RT "Deep-sequencing of endothelial cells exposed to hypoxia reveals the
RT complexity of known and novel microRNAs";
RL RNA. 18:472-484(2012).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-368; hsa-miR-368.
DR HGNC; 31782; MIR376C.
DR ENTREZGENE; 442913; MIR376C.
XX
CC This miRNA has been named both miR-368 and miR376c in the literature, and
CC previously here. The mature miR-376c product has been shown to be
CC modified by A to I edits [3]. The mature sequence shown here represents
CC the most commonly cloned form from large-scale cloning studies [4]. The
CC 5' end of the miRNA may be offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT modified_base 48
FT /mod_base=i
FT miRNA 5..25
FT /accession="MIMAT0022861"
FT /product="hsa-miR-376c-5p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
FT miRNA 43..63
FT /accession="MIMAT0000720"
FT /product="hsa-miR-376c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4], Northern [1], SOLiD [5]"
XX
SQ Sequence 66 BP; 20 A; 7 C; 12 G; 0 T; 27 other;
aaaaggugga uauuccuucu auguuuaugu uauuuauggu uaaacauaga ggaaauucca 60
cguuuu 66
//
ID hsa-mir-369 standard; RNA; HSA; 70 BP.
XX
AC MI0000777;
XX
DE Homo sapiens miR-369 stem-loop
XX
RN [1]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [2]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [3]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 31783; MIR369.
DR ENTREZGENE; 442914; MIR369.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0001621"
FT /product="hsa-miR-369-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
FT miRNA 44..64
FT /accession="MIMAT0000721"
FT /product="hsa-miR-369-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4]"
XX
SQ Sequence 70 BP; 17 A; 11 C; 15 G; 0 T; 27 other;
uugaagggag aucgaccgug uuauauucgc uuuauugacu ucgaauaaua caugguugau 60
cuuuucucag 70
//
ID hsa-mir-370 standard; RNA; HSA; 75 BP.
XX
AC MI0000778;
XX
DE Homo sapiens miR-370 stem-loop
XX
RN [1]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-370; hsa-miR-370.
DR HGNC; 31784; MIR370.
DR ENTREZGENE; 442915; MIR370.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0026483"
FT /product="hsa-miR-370-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 48..69
FT /accession="MIMAT0000722"
FT /product="hsa-miR-370-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4]"
XX
SQ Sequence 75 BP; 16 A; 20 C; 23 G; 0 T; 16 other;
agacagagaa gccaggucac gucucugcag uuacacagcu cacgagugcc ugcuggggug 60
gaaccugguc ugucu 75
//
ID hsa-mir-374a standard; RNA; HSA; 72 BP.
XX
AC MI0000782;
XX
DE Homo sapiens miR-374a stem-loop
XX
RN [1]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-374; hsa-miR-374.
DR HGNC; 31788; MIR374A.
DR ENTREZGENE; 442919; MIR374A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0000727"
FT /product="hsa-miR-374a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1]"
FT miRNA 42..63
FT /accession="MIMAT0004688"
FT /product="hsa-miR-374a-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 72 BP; 22 A; 11 C; 12 G; 0 T; 27 other;
uacaucggcc auuauaauac aaccugauaa guguuauagc acuuaucaga uuguauugua 60
auugucugug ua 72
//
ID hsa-mir-375 standard; RNA; HSA; 64 BP.
XX
AC MI0000783;
XX
DE Homo sapiens miR-375 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-375; hsa-miR-375.
DR HGNC; 31868; MIR375.
DR ENTREZGENE; 494324; MIR375.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..27
FT /accession="MIMAT0037313"
FT /product="hsa-miR-375-5p"
FT /evidence=not_experimental
FT miRNA 40..61
FT /accession="MIMAT0000728"
FT /product="hsa-miR-375-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000792"
XX
SQ Sequence 64 BP; 9 A; 24 C; 19 G; 0 T; 12 other;
ccccgcgacg agccccucgc acaaaccgga ccugagcguu uuguucguuc ggcucgcgug 60
aggc 64
//
ID hsa-mir-376a-1 standard; RNA; HSA; 68 BP.
XX
AC MI0000784;
XX
DE Homo sapiens miR-376a-1 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17322061.
RA Kawahara Y, Zinshteyn B, Sethupathy P, Iizasa H, Hatzigeorgiou AG,
RA Nishikura K;
RT "Redirection of silencing targets by adenosine-to-inosine editing of
RT miRNAs";
RL Science. 315:1137-1140(2007).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 31869; MIR376A1.
DR ENTREZGENE; 494325; MIR376A1.
XX
CC The mature miR-376a products have been shown to be modified by A to I
CC edits [3].
XX
FH Key Location/Qualifiers
FH
FT modified_base 9
FT /mod_base=i
FT modified_base 49
FT /mod_base=i
FT miRNA 7..28
FT /accession="MIMAT0003386"
FT /product="hsa-miR-376a-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4]"
FT miRNA 44..64
FT /accession="MIMAT0000729"
FT /product="hsa-miR-376a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4]"
FT /similarity="MI0000793"
XX
SQ Sequence 68 BP; 23 A; 10 C; 10 G; 0 T; 25 other;
uaaaagguag auucuccuuc uaugaguaca uuauuuauga uuaaucauag aggaaaaucc 60
acguuuuc 68
//
ID hsa-mir-377 standard; RNA; HSA; 69 BP.
XX
AC MI0000785;
XX
DE Homo sapiens miR-377 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-377; hsa-miR-377.
DR HGNC; 31870; MIR377.
DR ENTREZGENE; 494326; MIR377.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0004689"
FT /product="hsa-miR-377-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 45..66
FT /accession="MIMAT0000730"
FT /product="hsa-miR-377-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
FT /similarity="MI0000794"
XX
SQ Sequence 69 BP; 16 A; 11 C; 16 G; 0 T; 26 other;
uugagcagag guugcccuug gugaauucgc uuuauuuaug uugaaucaca caaaggcaac 60
uuuuguuug 69
//
ID hsa-mir-378a standard; RNA; HSA; 66 BP.
XX
AC MI0000786;
XX
DE Homo sapiens miR-378a stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-378; hsa-miR-378.
DR HGNC; 31871; MIR378.
DR ENTREZGENE; 494327; MIR378.
XX
CC miR-422b was the most abundant miRNA cloned from human promyelocytic
CC leukemia (HL-60) cells [2]. The sequence originates from the opposite arm
CC of the human homologue of previously identified mouse mir-378 [1].
CC Landgraf et al. show that the 3' product (previously called miR-422b) is
CC the predominant one [3]. Further, mir-378 and mir-422a loci are
CC unrelated. miR-422b is thus renamed miR-378 here.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0000731"
FT /product="hsa-miR-378a-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000795"
FT miRNA 43..64
FT /accession="MIMAT0000732"
FT /product="hsa-miR-378a-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Northern [2]"
XX
SQ Sequence 66 BP; 15 A; 16 C; 19 G; 0 T; 16 other;
agggcuccug acuccagguc cuguguguua ccuagaaaua gcacuggacu uggagucaga 60
aggccu 66
//
ID hsa-mir-379 standard; RNA; HSA; 67 BP.
XX
AC MI0000787;
XX
DE Homo sapiens miR-379 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [3]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-379; hsa-miR-379.
DR HGNC; 31872; MIR379.
DR ENTREZGENE; 494328; MIR379.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0000733"
FT /product="hsa-miR-379-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
FT /similarity="MI0000796"
FT miRNA 44..65
FT /accession="MIMAT0004690"
FT /product="hsa-miR-379-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 67 BP; 19 A; 12 C; 16 G; 0 T; 20 other;
agagauggua gacuauggaa cguaggcguu augauuucug accuauguaa caugguccac 60
uaacucu 67
//
ID hsa-mir-380 standard; RNA; HSA; 61 BP.
XX
AC MI0000788;
XX
DE Homo sapiens miR-380 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 31873; MIR380.
DR ENTREZGENE; 494329; MIR380.
XX
CC Landgraf et al. confirm that the 3' product is the predominant one [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0000734"
FT /product="hsa-miR-380-5p"
FT /evidence=not_experimental
FT /similarity="MI0000797"
FT miRNA 40..61
FT /accession="MIMAT0000735"
FT /product="hsa-miR-380-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000797"
XX
SQ Sequence 61 BP; 16 A; 12 C; 13 G; 0 T; 20 other;
aagaugguug accauagaac augcgcuauc ucugugucgu auguaauaug guccacaucu 60
u 61
//
ID hsa-mir-381 standard; RNA; HSA; 75 BP.
XX
AC MI0000789;
XX
DE Homo sapiens miR-381 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 22282338.
RA Voellenkle C, Rooij Jv, Guffanti A, Brini E, Fasanaro P, Isaia E, Croft L,
RA David M, Capogrossi MC, Moles A, Felsani A, Martelli F;
RT "Deep-sequencing of endothelial cells exposed to hypoxia reveals the
RT complexity of known and novel microRNAs";
RL RNA. 18:472-484(2012).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-381; hsa-miR-381.
DR HGNC; 31874; MIR381.
DR ENTREZGENE; 494330; MIR381.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0022862"
FT /product="hsa-miR-381-5p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
FT miRNA 49..70
FT /accession="MIMAT0000736"
FT /product="hsa-miR-381-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000798"
XX
SQ Sequence 75 BP; 20 A; 12 C; 18 G; 0 T; 25 other;
uacuuaaagc gagguugccc uuuguauauu cgguuuauug acauggaaua uacaagggca 60
agcucucugu gagua 75
//
ID hsa-mir-382 standard; RNA; HSA; 76 BP.
XX
AC MI0000790;
XX
DE Homo sapiens miR-382 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-382; hsa-miR-382.
DR HGNC; 31875; MIR382.
DR ENTREZGENE; 494331; MIR382.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0000737"
FT /product="hsa-miR-382-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
FT /similarity="MI0000799"
FT miRNA 47..67
FT /accession="MIMAT0022697"
FT /product="hsa-miR-382-3p"
FT /evidence=not_experimental
XX
SQ Sequence 76 BP; 20 A; 13 C; 16 G; 0 T; 27 other;
uacuugaaga gaaguuguuc gugguggauu cgcuuuacuu augacgaauc auucacggac 60
aacacuuuuu ucagua 76
//
ID mmu-mir-376a standard; RNA; MMU; 68 BP.
XX
AC MI0000793;
XX
DE Mus musculus miR-376a stem-loop
XX
RN [1]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [4]
RX PUBMED; 17322061.
RA Kawahara Y, Zinshteyn B, Sethupathy P, Iizasa H, Hatzigeorgiou AG,
RA Nishikura K;
RT "Redirection of silencing targets by adenosine-to-inosine editing of
RT miRNAs";
RL Science. 315:1137-1140(2007).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619377; Mir376a.
DR ENTREZGENE; 723855; Mir376a.
XX
CC Seitz et al. predicted a cluster of 40 miRNAs in the imprinted human 14q32
CC domain, and confirmed the expression of a subset by Northern blot or
CC primer extension in mouse [1]. The expression of miR-376a was
CC independently verified by Poy et al. [2]. The mature miR-376a products
CC have been shown to be modified by A to I edits [4]. The mature sequence
CC shown here represents the most commonly cloned form from large-scale
CC cloning studies [5].
XX
FH Key Location/Qualifiers
FH
FT modified_base 9
FT /mod_base=i
FT miRNA 6..27
FT /accession="MIMAT0003387"
FT /product="mmu-miR-376a-5p"
FT /evidence=experimental
FT /experiment="cloned [3,5], Illumina [6-7]"
FT miRNA 44..64
FT /accession="MIMAT0000740"
FT /product="mmu-miR-376a-3p"
FT /evidence=experimental
FT /experiment="Northern [1], PCR [1], cloned [2-3,5],
FT Illumina [6-7]"
XX
SQ Sequence 68 BP; 24 A; 11 C; 11 G; 0 T; 22 other;
uaaaagguag auucuccuuc uaugaguaca auauuaauga cuaaucguag aggaaaaucc 60
acguuuuc 68
//
ID mmu-mir-377 standard; RNA; MMU; 68 BP.
XX
AC MI0000794;
XX
DE Mus musculus miR-377 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619382; Mir377.
DR ENTREZGENE; 723857; Mir377.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0017079"
FT /product="mmu-miR-377-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 44..65
FT /accession="MIMAT0000741"
FT /product="mmu-miR-377-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
XX
SQ Sequence 68 BP; 16 A; 11 C; 17 G; 0 T; 24 other;
ugagcagagg uugcccuugg ugaauucgcu uuauugaugu ugaaucacac aaaggcaacu 60
uuuguuug 68
//
ID mmu-mir-378a standard; RNA; MMU; 66 BP.
XX
AC MI0000795;
XX
DE Mus musculus miR-378 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3617791; Mir378.
DR ENTREZGENE; 723889; Mir378.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0000742"
FT /product="mmu-miR-378a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 43..63
FT /accession="MIMAT0003151"
FT /product="mmu-miR-378a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0000786"
XX
SQ Sequence 66 BP; 14 A; 17 C; 19 G; 0 T; 16 other;
agggcuccug acuccagguc cuguguguua ccucgaaaua gcacuggacu uggagucaga 60
aggccu 66
//
ID mmu-mir-379 standard; RNA; MMU; 66 BP.
XX
AC MI0000796;
XX
DE Mus musculus miR-379 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619386; Mir379.
DR ENTREZGENE; 723858; Mir379.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0000743"
FT /product="mmu-miR-379-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5,7]"
FT miRNA 43..64
FT /accession="MIMAT0017080"
FT /product="mmu-miR-379-3p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
XX
SQ Sequence 66 BP; 18 A; 11 C; 16 G; 0 T; 21 other;
agagauggua gacuauggaa cguaggcguu auguuuuuga ccuauguaac augguccacu 60
aacucu 66
//
ID mmu-mir-380 standard; RNA; MMU; 61 BP.
XX
AC MI0000797;
XX
DE Mus musculus miR-380 stem-loop
XX
RN [1]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619389; Mir380.
DR ENTREZGENE; 723859; Mir380.
XX
CC Seitz et al. predicted a cluster of 40 miRNAs in the imprinted human 14q32
CC domain, and confirmed the expression of a subset by Northern blot or
CC primer extension in mouse, including a sequence from the 3' arm of this
CC precursor [1]. Poy et al. cloned a sequence from the 5' arm from mouse
CC pancreatic beta cell line MIN6 [2]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [3]. The 5' end of the miRNA may be offset with respect to previous
CC annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0000744"
FT /product="mmu-miR-380-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [4-5]"
FT miRNA 40..61
FT /accession="MIMAT0000745"
FT /product="mmu-miR-380-3p"
FT /evidence=experimental
FT /experiment="Northern [1], PCR [1], cloned [3], Illumina
FT [4]"
XX
SQ Sequence 61 BP; 15 A; 12 C; 14 G; 0 T; 20 other;
aagaugguug accauagaac augcgcuacu ucugugucgu auguaguaug guccacaucu 60
u 61
//
ID mmu-mir-381 standard; RNA; MMU; 75 BP.
XX
AC MI0000798;
XX
DE Mus musculus miR-381 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619391; Mir381.
DR ENTREZGENE; 723935; Mir381.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0017081"
FT /product="mmu-miR-381-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 49..70
FT /accession="MIMAT0000746"
FT /product="mmu-miR-381-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 75 BP; 20 A; 12 C; 18 G; 0 T; 25 other;
uacuuaaagc gagguugccc uuuguauauu cgguuuauug acauggaaua uacaagggca 60
agcucucugu gagua 75
//
ID mmu-mir-382 standard; RNA; MMU; 76 BP.
XX
AC MI0000799;
XX
DE Mus musculus miR-382 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619392; Mir382.
DR ENTREZGENE; 723912; Mir382.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0000747"
FT /product="mmu-miR-382-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 49..70
FT /accession="MIMAT0004691"
FT /product="mmu-miR-382-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 76 BP; 19 A; 13 C; 17 G; 0 T; 27 other;
uacuugaaga gaaguuguuc gugguggauu cgcuuuacuu gugacgaauc auucacggac 60
aacacuuuuu ucagua 76
//
ID mmu-mir-383 standard; RNA; MMU; 70 BP.
XX
AC MI0000800;
XX
DE Mus musculus miR-383 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619393; Mir383.
DR ENTREZGENE; 723860; Mir383.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0000748"
FT /product="mmu-miR-383-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 45..65
FT /accession="MIMAT0017082"
FT /product="mmu-miR-383-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 70 BP; 19 A; 14 C; 21 G; 0 T; 16 other;
cucagaucag aaggugacug uggcuuuggg uggauauuaa ucagccacag cacugccugg 60
ucagaaagag 70
//
ID hsa-mir-340 standard; RNA; HSA; 95 BP.
XX
AC MI0000802;
XX
DE Homo sapiens miR-340 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-340; hsa-miR-340.
DR HGNC; 31777; MIR340.
DR ENTREZGENE; 442908; MIR340.
XX
CC This sequence is the predicted homologue of a miRNA cloned from rat
CC neuronal tissue [1,2]. Landgraf et al. show that the 5' product is the
CC predominant one in human, mouse and rat [3], in contrast to the previous
CC annotation. The mature sequence shown here represents the most commonly
CC cloned form from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0004692"
FT /product="hsa-miR-340-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 58..79
FT /accession="MIMAT0000750"
FT /product="hsa-miR-340-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000622"
XX
SQ Sequence 95 BP; 22 A; 16 C; 21 G; 0 T; 36 other;
uuguaccugg ugugauuaua aagcaaugag acugauuguc auaugucguu ugugggaucc 60
gucucaguua cuuuauagcc auaccuggua ucuua 95
//
ID hsa-mir-330 standard; RNA; HSA; 94 BP.
XX
AC MI0000803;
XX
DE Homo sapiens miR-330 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-330; hsa-miR-330.
DR HGNC; 31771; MIR330.
DR ENTREZGENE; 442902; MIR330.
XX
CC This sequence is the predicted homologue of a miRNA cloned from rat
CC neuronal tissue [1,2], later verified in human [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0004693"
FT /product="hsa-miR-330-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT miRNA 57..79
FT /accession="MIMAT0000751"
FT /product="hsa-miR-330-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000606"
XX
SQ Sequence 94 BP; 18 A; 31 C; 26 G; 0 T; 19 other;
cuuuggcgau cacugccucu cugggccugu gucuuaggcu cugcaagauc aaccgagcaa 60
agcacacggc cugcagagag gcagcgcucu gccc 94
//
ID hsa-mir-342 standard; RNA; HSA; 99 BP.
XX
AC MI0000805;
XX
DE Homo sapiens miR-342 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [5]
RX PUBMED; 18230126.
RA Afanasyeva EA, Hotz-Wagenblatt A, Glatting KH, Westermann F;
RT "New miRNAs cloned from neuroblastoma";
RL BMC Genomics. 9:52(2008).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-342; hsa-miR-342.
DR HGNC; 31778; MIR342.
DR ENTREZGENE; 442909; MIR342.
XX
CC This sequence was predicted by homology to a rat miRNA [1,2] and later
CC verified in human [3]. The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0004694"
FT /product="hsa-miR-342-5p"
FT /evidence=experimental
FT /experiment="cloned [3-5], Northern [5]"
FT miRNA 61..83
FT /accession="MIMAT0000753"
FT /product="hsa-miR-342-3p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT /similarity="MI0000626"
XX
SQ Sequence 99 BP; 25 A; 21 C; 28 G; 0 T; 25 other;
gaaacugggc ucaaggugag gggugcuauc ugugauugag ggacaugguu aauggaauug 60
ucucacacag aaaucgcacc cgucaccuug gccuacuua 99
//
ID hsa-mir-337 standard; RNA; HSA; 93 BP.
XX
AC MI0000806;
XX
DE Homo sapiens miR-337 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-337; hsa-miR-337.
DR HGNC; 31774; MIR337.
DR ENTREZGENE; 442905; MIR337.
XX
CC This sequence was predicted based on homology with a verified rat miRNA
CC [1,2], and later confirmed in human [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0004695"
FT /product="hsa-miR-337-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 61..82
FT /accession="MIMAT0000754"
FT /product="hsa-miR-337-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000614"
XX
SQ Sequence 93 BP; 20 A; 21 C; 24 G; 0 T; 28 other;
guagucagua guuggggggu gggaacggcu ucauacagga guugaugcac aguuauccag 60
cuccuauaug augccuuucu ucauccccuu caa 93
//
ID hsa-mir-323a standard; RNA; HSA; 86 BP.
XX
AC MI0000807;
XX
DE Homo sapiens miR-323a stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-323; hsa-miR-323.
DR HGNC; 31766; MIR323.
DR ENTREZGENE; 442897; MIR323.
XX
CC This sequence is the predicted homologue of a miRNA cloned from rat
CC neuronal tissue [1,2], later verified in human [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0004696"
FT /product="hsa-miR-323a-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 51..71
FT /accession="MIMAT0000755"
FT /product="hsa-miR-323a-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000591"
XX
SQ Sequence 86 BP; 15 A; 19 C; 24 G; 0 T; 28 other;
uugguacuug gagagaggug guccguggcg cguucgcuuu auuuauggcg cacauuacac 60
ggucgaccuc uuugcaguau cuaauc 86
//
ID hsa-mir-135b standard; RNA; HSA; 97 BP.
XX
AC MI0000810;
XX
DE Homo sapiens miR-135b stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-135b; hsa-miR-135b.
DR HGNC; 31760; MIR135B.
DR ENTREZGENE; 442891; MIR135B.
XX
CC This sequence is the predicted homologue of a miRNA cloned from rat
CC neuronal tissue [1,2], later verified in human [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000758"
FT /product="hsa-miR-135b-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT /similarity="MI0000645"
FT miRNA 55..76
FT /accession="MIMAT0004698"
FT /product="hsa-miR-135b-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 97 BP; 19 A; 25 C; 26 G; 0 T; 27 other;
cacucugcug uggccuaugg cuuuucauuc cuaugugauu gcugucccaa acucauguag 60
ggcuaaaagc caugggcuac agugaggggc gagcucc 97
//
ID hsa-mir-148b standard; RNA; HSA; 99 BP.
XX
AC MI0000811;
XX
DE Homo sapiens miR-148b stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-148b; hsa-miR-148b.
DR HGNC; 31761; MIR148B.
DR ENTREZGENE; 442892; MIR148B.
XX
CC This sequence is the predicted homologue of a miRNA cloned from rat
CC neuronal tissue [1,2]. Its expression was later verified in human [3,4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0004699"
FT /product="hsa-miR-148b-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 63..84
FT /accession="MIMAT0000759"
FT /product="hsa-miR-148b-3p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT /similarity="MI0000616"
XX
SQ Sequence 99 BP; 26 A; 21 C; 22 G; 0 T; 30 other;
caagcacgau uagcauuuga ggugaaguuc uguuauacac ucaggcugug gcucucugaa 60
agucagugca ucacagaacu uugucucgaa agcuuucua 99
//
ID hsa-mir-324 standard; RNA; HSA; 83 BP.
XX
AC MI0000813;
XX
DE Homo sapiens miR-324 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-324-3p; hsa-miR-324-3p.
DR TARGETS:PICTAR-VERT; hsa-miR-324-5p; hsa-miR-324-5p.
DR HGNC; 31767; MIR324.
DR ENTREZGENE; 442898; MIR324.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000761"
FT /product="hsa-miR-324-5p"
FT /evidence=experimental
FT /experiment="cloned [4-5]"
FT /similarity="MI0000594"
FT miRNA 50..72
FT /accession="MIMAT0000762"
FT /product="hsa-miR-324-3p"
FT /evidence=experimental
FT /experiment="cloned [3-5]"
FT /similarity="MI0000594"
XX
SQ Sequence 83 BP; 13 A; 26 C; 25 G; 0 T; 19 other;
cugacuaugc cuccccgcau ccccuagggc auugguguaa agcuggagac ccacugcccc 60
aggugcugcu ggggguugua guc 83
//
ID hsa-mir-338 standard; RNA; HSA; 67 BP.
XX
AC MI0000814;
XX
DE Homo sapiens miR-338 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-338; hsa-miR-338.
DR HGNC; 31775; MIR338.
DR ENTREZGENE; 442906; MIR338.
XX
CC This sequence is the predicted homologue of a miRNA cloned from rat
CC neuronal tissue [1,2], later verified in human [3]. The mature sequence
CC shown here represents the most commonly cloned form from large-scale
CC cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0004701"
FT /product="hsa-miR-338-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT miRNA 42..63
FT /accession="MIMAT0000763"
FT /product="hsa-miR-338-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000618"
XX
SQ Sequence 67 BP; 17 A; 15 C; 16 G; 0 T; 19 other;
ucuccaacaa uauccuggug cugagugaug acucaggcga cuccagcauc agugauuuug 60
uugaaga 67
//
ID hsa-mir-339 standard; RNA; HSA; 94 BP.
XX
AC MI0000815;
XX
DE Homo sapiens miR-339 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-339; hsa-miR-339.
DR HGNC; 31776; MIR339.
DR ENTREZGENE; 442907; MIR339.
XX
CC This sequence is the predicted homologue of a miRNA cloned from rat
CC neuronal tissue [1,3]. Expression of mature miRNA was later verified in
CC human [2,4]. The mature sequence shown here represents the most commonly
CC cloned form from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0000764"
FT /product="hsa-miR-339-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4]"
FT /similarity="MI0000620"
FT miRNA 50..72
FT /accession="MIMAT0004702"
FT /product="hsa-miR-339-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 94 BP; 9 A; 38 C; 31 G; 0 T; 16 other;
cggggcggcc gcucucccug uccuccagga gcucacgugu gccugccugu gagcgccucg 60
acgacagagc cggcgccugc cccagugucu gcgc 94
//
ID hsa-mir-335 standard; RNA; HSA; 94 BP.
XX
AC MI0000816;
XX
DE Homo sapiens miR-335 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-335; hsa-miR-335.
DR HGNC; 31773; MIR335.
DR ENTREZGENE; 442904; MIR335.
XX
CC This sequence is the predicted homologue of a miRNA cloned from rat
CC neuronal tissue [1,2], later verified in human [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000765"
FT /product="hsa-miR-335-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT /similarity="MI0000612"
FT miRNA 52..73
FT /accession="MIMAT0004703"
FT /product="hsa-miR-335-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 94 BP; 24 A; 19 C; 17 G; 0 T; 34 other;
uguuuugagc gggggucaag agcaauaacg aaaaauguuu gucauaaacc guuuuucauu 60
auugcuccug accuccucuc auuugcuaua uuca 94
//
ID mmu-mir-335 standard; RNA; MMU; 98 BP.
XX
AC MI0000817;
XX
DE Mus musculus miR-335 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17687032.
RA Sathyan P, Golden HB, Miranda RC;
RT "Competing interactions between micro-RNAs determine neural progenitor
RT survival and proliferation after ethanol exposure: evidence from an ex
RT vivo model of the fetal cerebral cortical neuroepithelium";
RL J Neurosci. 27:8546-8557(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619348; Mir335.
DR ENTREZGENE; 723930; Mir335.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000766"
FT /product="mmu-miR-335-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [5-6]"
FT /similarity="MI0000612"
FT miRNA 56..77
FT /accession="MIMAT0004704"
FT /product="mmu-miR-335-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [5-6]"
XX
SQ Sequence 98 BP; 22 A; 21 C; 21 G; 0 T; 34 other;
ucuuuugggc gggggucaag agcaauaacg aaaaauguuu guuuuucgua aaccguuuuu 60
cauuauugcu ccugaccccc ucucaugggu uauagcca 98
//
ID cel-mir-392 standard; RNA; CEL; 110 BP.
XX
AC MI0000819;
XX
DE Caenorhabditis elegans miR-392 stem-loop
XX
RN [1]
RX PUBMED; 15317971.
RA Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB;
RT "Patterns of flanking sequence conservation and a characteristic upstream
RT motif for microRNA gene identification";
RL RNA. 10:1309-1322(2004).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
CC This miRNA was predicted by computational analysis of C. elegans and C.
CC briggsae, and expression of the mature microRNA confirmed by PCR
CC amplification, cloning and sequencing [1]. The 5' end of the mature
CC sequence was mapped by PCR, and the 3' end confirmed later [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..51
FT /accession="MIMAT0020344"
FT /product="cel-miR-392-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 68..89
FT /accession="MIMAT0000768"
FT /product="cel-miR-392-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], PCR [1], Illumina [3-4]"
XX
SQ Sequence 110 BP; 35 A; 20 C; 24 G; 0 T; 31 other;
uuuuugaaaa ucucgcagac guguucaguc agcauucgug guugaggaua ucgaacacaa 60
aaaaagauau caucgaucac gugugaugac agauuuucug cgacuaacag 110
//
ID mmu-mir-133a-2 standard; RNA; MMU; 104 BP.
XX
AC MI0000820;
XX
DE Mus musculus miR-133a-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618718; Mir133a-2.
DR ENTREZGENE; 723954; Mir133a-2.
XX
CC This mature miRNA sequence was named miR-133 in reference [1], and renamed
CC miR-133a on subsequent identification of a homologue differing at the
CC terminal 3' position (MIR:MI0000821). The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [3]. The 5' end of the miRNA may be offset with respect to previous
CC annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0003473"
FT /product="mmu-miR-133a-5p"
FT /evidence=experimental
FT /experiment="MPSS [2], Illumina [4-5]"
FT miRNA 59..80
FT /accession="MIMAT0000145"
FT /product="mmu-miR-133a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Illumina [4-5]"
XX
SQ Sequence 104 BP; 28 A; 25 C; 26 G; 0 T; 25 other;
agaagccaaa ugcuuugcug aagcugguaa aauggaacca aaucagcugu uggauggauu 60
ugguccccuu caaccagcug uagcugcgca uugaucacgc cgca 104
//
ID mmu-mir-133b standard; RNA; MMU; 119 BP.
XX
AC MI0000821;
XX
DE Mus musculus miR-133b stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618720; Mir133b.
DR ENTREZGENE; 723817; Mir133b.
XX
CC miR-133b was predicted based on comparative analysis of human, mouse and
CC Fugu [1]. It is homologous to miR-133a (MIR:MI0000159 and MIR:MI0000820).
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..50
FT /accession="MIMAT0017083"
FT /product="mmu-miR-133b-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 66..87
FT /accession="MIMAT0000769"
FT /product="mmu-miR-133b-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [4-5]"
FT /similarity="MI0000820"
XX
SQ Sequence 119 BP; 27 A; 35 C; 32 G; 0 T; 25 other;
ccuccaaagg gaguggcccc cugcucuggc uggucaaacg gaaccaaguc cgucuuccug 60
agagguuugg uccccuucaa ccagcuacag cagggcuggc aaagcucaau auuuggaga 119
//
ID mmu-mir-181b-2 standard; RNA; MMU; 89 BP.
XX
AC MI0000823;
XX
DE Mus musculus miR-181b-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618736; Mir181b-2.
DR ENTREZGENE; 723903; Mir181b-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0000673"
FT /product="mmu-miR-181b-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4], Illumina [5-6]"
FT /similarity="MI0001367"
FT miRNA 54..75
FT /accession="MIMAT0017084"
FT /product="mmu-miR-181b-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
XX
SQ Sequence 89 BP; 26 A; 20 C; 20 G; 0 T; 23 other;
uugauggcug cacucaacau ucauugcugu cgguggguuu gaaugucaac caacucacug 60
aucaaugaau gcaaacugcg ggccaaaaa 89
//
ID hsa-mir-345 standard; RNA; HSA; 98 BP.
XX
AC MI0000825;
XX
DE Homo sapiens miR-345 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-345; hsa-miR-345.
DR HGNC; 31779; MIR345.
DR ENTREZGENE; 442910; MIR345.
XX
CC This sequence is the predicted human homologue [2] of a sequence cloned
CC from rat neuronal tissue [1], later validated in human [3,4]. The mature
CC sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [4]. The 5' end of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0000772"
FT /product="hsa-miR-345-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4], Northern [3]"
FT /similarity="MI0000631"
FT miRNA 54..75
FT /accession="MIMAT0022698"
FT /product="hsa-miR-345-3p"
FT /evidence=not_experimental
XX
SQ Sequence 98 BP; 18 A; 26 C; 33 G; 0 T; 21 other;
acccaaaccc uaggucugcu gacuccuagu ccagggcucg ugauggcugg ugggcccuga 60
acgagggguc uggaggccug gguuugaaua ucgacagc 98
//
ID rno-let-7a-1 standard; RNA; RNO; 94 BP.
XX
AC MI0000827;
XX
DE Rattus norvegicus let-7a-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314213; Mirlet7a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0000774"
FT /product="rno-let-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT miRNA 64..85
FT /accession="MIMAT0017085"
FT /product="rno-let-7a-1-3p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
XX
SQ Sequence 94 BP; 24 A; 17 C; 23 G; 0 T; 30 other;
uucacugugg gaugagguag uagguuguau aguuuuaggg ucacacccac cacugggaga 60
uaacuauaca aucuacuguc uuuccuaagg ugau 94
//
ID rno-let-7a-2 standard; RNA; RNO; 96 BP.
XX
AC MI0000828;
XX
DE Rattus norvegicus let-7a-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313989; Mirlet7a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000774"
FT /product="rno-let-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT miRNA 62..83
FT /accession="MIMAT0017086"
FT /product="rno-let-7a-2-3p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
XX
SQ Sequence 96 BP; 23 A; 21 C; 26 G; 0 T; 26 other;
cggcaugcuc ccaggcugag guaguagguu guauaguuua gaguuacaac aagggagaua 60
acuguacagc cuccuagcuu uccuugggac uugcac 96
//
ID rno-let-7b standard; RNA; RNO; 85 BP.
XX
AC MI0000829;
XX
DE Rattus norvegicus let-7b stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313990; Mirlet7b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000775"
FT /product="rno-let-7b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT miRNA 61..82
FT /accession="MIMAT0004705"
FT /product="rno-let-7b-3p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [5]"
XX
SQ Sequence 85 BP; 17 A; 20 C; 26 G; 0 T; 22 other;
gcggggugag guaguagguu gugugguuuc agggcaguga ugucgccccu ccgaagauaa 60
cuauacaacc uacugccuuc ccuga 85
//
ID rno-let-7c-1 standard; RNA; RNO; 94 BP.
XX
AC MI0000830;
XX
DE Rattus norvegicus let-7c-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [6]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314184; Mirlet7c-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000776"
FT /product="rno-let-7c-5p"
FT /evidence=experimental
FT /experiment="cloned [1-5], SOLiD [6]"
FT miRNA 61..82
FT /accession="MIMAT0017087"
FT /product="rno-let-7c-1-3p"
FT /evidence=experimental
FT /experiment="SOLiD [6]"
XX
SQ Sequence 94 BP; 19 A; 18 C; 26 G; 0 T; 31 other;
ugugugcauc cggguugagg uaguagguug uaugguuuag aguuacaccc ugggaguuaa 60
cuguacaacc uucuagcuuu ccuuggagca cacu 94
//
ID rno-let-7c-2 standard; RNA; RNO; 95 BP.
XX
AC MI0000831;
XX
DE Rattus norvegicus let-7c-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [6]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314224; Mirlet7c-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000776"
FT /product="rno-let-7c-5p"
FT /evidence=experimental
FT /experiment="cloned [1-5], SOLiD [6]"
FT miRNA 62..83
FT /accession="MIMAT0017088"
FT /product="rno-let-7c-2-3p"
FT /evidence=experimental
FT /experiment="SOLiD [6]"
XX
SQ Sequence 95 BP; 14 A; 22 C; 29 G; 0 T; 30 other;
acggccuuug gggugaggua guagguugua ugguuuuggg cucugccccg cucugcggua 60
acuauacaau cuacugucuu uccugaagug gccgc 95
//
ID rno-let-7e standard; RNA; RNO; 93 BP.
XX
AC MI0000832;
XX
DE Rattus norvegicus let-7e stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313991; Mirlet7e.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000777"
FT /product="rno-let-7e-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT miRNA 60..81
FT /accession="MIMAT0004706"
FT /product="rno-let-7e-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
XX
SQ Sequence 93 BP; 18 A; 29 C; 29 G; 0 T; 17 other;
cgcgcccccc gggcugaggu aggagguugu auaguugagg aagacacccg aggagaucac 60
uauacggccu ccuagcuuuc cccaggcugc gcc 93
//
ID rno-let-7f-1 standard; RNA; RNO; 89 BP.
XX
AC MI0000833;
XX
DE Rattus norvegicus let-7f-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314277; Mirlet7f-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0000778"
FT /product="rno-let-7f-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT miRNA 64..84
FT /accession="MIMAT0017089"
FT /product="rno-let-7f-1-3p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
XX
SQ Sequence 89 BP; 23 A; 12 C; 23 G; 0 T; 31 other;
aucagaguga gguaguagau uguauaguug ugggguagug auuuuacccu guuuaggaga 60
uaacuauaca aucuauugcc uucccugag 89
//
ID rno-let-7f-2 standard; RNA; RNO; 83 BP.
XX
AC MI0000834;
XX
DE Rattus norvegicus let-7f-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313992; Mirlet7f-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0000778"
FT /product="rno-let-7f-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT miRNA 58..78
FT /accession="MIMAT0017090"
FT /product="rno-let-7f-2-3p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
XX
SQ Sequence 83 BP; 20 A; 15 C; 20 G; 0 T; 28 other;
ugugggauga gguaguagau uguauaguuu uagggucaua ccccaucuug gagauaacua 60
uacagucuac ugucuuuccc acg 83
//
ID rno-let-7i standard; RNA; RNO; 85 BP.
XX
AC MI0000835;
XX
DE Rattus norvegicus let-7i stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [6]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313993; Mirlet7i.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000779"
FT /product="rno-let-7i-5p"
FT /evidence=experimental
FT /experiment="cloned [1-5], SOLiD [6]"
FT miRNA 62..83
FT /accession="MIMAT0004707"
FT /product="rno-let-7i-3p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [6]"
XX
SQ Sequence 85 BP; 13 A; 17 C; 29 G; 0 T; 26 other;
cuggcugagg uaguaguuug ugcuguuggu cggguuguga cauugcccgc uguggagaua 60
acugcgcaag cuacugccuu gcuag 85
//
ID rno-mir-7a-2 standard; RNA; RNO; 95 BP.
XX
AC MI0000836;
XX
DE Rattus norvegicus miR-7a-2 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314225; Mir7a-2.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0000606"
FT /product="rno-miR-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0001361"
FT miRNA 57..78
FT /accession="MIMAT0017091"
FT /product="rno-miR-7a-2-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 95 BP; 21 A; 23 C; 24 G; 0 T; 27 other;
ggacagacca gcccugucug gaagacuagu gauuuuguug uugugucugu guccaacaac 60
aagucccagu cugccacaug guguugguca cauca 95
//
ID rno-mir-9a-1 standard; RNA; RNO; 89 BP.
XX
AC MI0000838;
XX
DE Rattus norvegicus miR-9a-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313994; Mir9-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000781"
FT /product="rno-miR-9a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT miRNA 55..76
FT /accession="MIMAT0004708"
FT /product="rno-miR-9a-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [5]"
XX
SQ Sequence 89 BP; 25 A; 13 C; 23 G; 0 T; 28 other;
cgggguuggu uguuaucuuu gguuaucuag cuguaugagu gguguggagu cuucauaaag 60
cuagauaacc gaaaguaaaa auaacccca 89
//
ID rno-mir-9a-3 standard; RNA; RNO; 90 BP.
XX
AC MI0000839;
XX
DE Rattus norvegicus miR-9a-3 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314149; Mir9-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000781"
FT /product="rno-miR-9a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT miRNA 55..76
FT /accession="MIMAT0004708"
FT /product="rno-miR-9a-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [5]"
XX
SQ Sequence 90 BP; 26 A; 19 C; 21 G; 0 T; 24 other;
ggaggcccgu uucucucuuu gguuaucuag cuguaugagu gccacagagc cgucauaaag 60
cuagauaacc gaaaguagaa augacucuaa 90
//
ID rno-mir-9a-2 standard; RNA; RNO; 87 BP.
XX
AC MI0000840;
XX
DE Rattus norvegicus miR-9a-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313995; Mir9-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000781"
FT /product="rno-miR-9a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT miRNA 53..74
FT /accession="MIMAT0004708"
FT /product="rno-miR-9a-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [5]"
XX
SQ Sequence 87 BP; 26 A; 13 C; 19 G; 0 T; 29 other;
ggaagcgagu uguuaucuuu gguuaucuag cuguaugagu guauuggucu ucauaaagcu 60
agauaaccga aaguaaaaac uccuuca 87
//
ID rno-mir-10a standard; RNA; RNO; 110 BP.
XX
AC MI0000841;
XX
DE Rattus norvegicus miR-10a stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313996; Mir10a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0000782"
FT /product="rno-miR-10a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0001363"
FT miRNA 63..84
FT /accession="MIMAT0004709"
FT /product="rno-miR-10a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
XX
SQ Sequence 110 BP; 29 A; 21 C; 23 G; 0 T; 37 other;
gaccugucug ucuucuguau auacccugua gauccgaauu uguguaagga auuuuguggu 60
cacaaauucg uaucuagggg aauauguagu ugacauaaac acuccgcuca 110
//
ID rno-mir-15b standard; RNA; RNO; 98 BP.
XX
AC MI0000843;
XX
DE Rattus norvegicus miR-15b stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314150; Mir15b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0000784"
FT /product="rno-miR-15b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT miRNA 58..79
FT /accession="MIMAT0017093"
FT /product="rno-miR-15b-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 98 BP; 33 A; 17 C; 17 G; 0 T; 31 other;
uuggaaccuu aaaguacugu agcagcacau caugguuuac auacuacagu caagaugcga 60
aucauuauuu gcugcucuag aaauuuaagg aaauucau 98
//
ID rno-mir-16 standard; RNA; RNO; 95 BP.
XX
AC MI0000844;
XX
DE Rattus norvegicus miR-16 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313997; Mir16.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000785"
FT /product="rno-miR-16-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1,3], SOLiD [5]"
FT miRNA 59..79
FT /accession="MIMAT0017094"
FT /product="rno-miR-16-3p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
XX
SQ Sequence 95 BP; 30 A; 16 C; 19 G; 0 T; 30 other;
cauacuuguu ccgcucuagc agcacguaaa uauuggcgua gugaaauaaa uauuaaacac 60
caauauuauu gugcugcuuu agugugacag ggaua 95
//
ID rno-mir-17-1 standard; RNA; RNO; 84 BP.
XX
AC MI0000845;
XX
DE Rattus norvegicus miR-17-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313998; Mir17-1.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0000786"
FT /product="rno-miR-17-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000071"
FT miRNA 51..72
FT /accession="MIMAT0004710"
FT /product="rno-miR-17-1-3p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
XX
SQ Sequence 84 BP; 19 A; 14 C; 27 G; 0 T; 24 other;
gucaggauaa ugucaaagug cuuacagugc agguaguggu gugugcaucu acugcaguga 60
aggcacuugu ggcauugugc ugac 84
//
ID rno-mir-18a standard; RNA; RNO; 96 BP.
XX
AC MI0000846;
XX
DE Rattus norvegicus miR-18a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314227; Mir18a.
XX
CC This miRNA was predicted based on homology to a verified miRNA from mouse
CC [1]. Its expression in rat was later verified by cloning [2]. The mature
CC sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [3]. The ends of the miRNA may be offset with
CC respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0000787"
FT /product="rno-miR-18a-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], SOLiD [4]"
FT miRNA 58..78
FT /accession="MIMAT0017095"
FT /product="rno-miR-18a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 96 BP; 22 A; 19 C; 23 G; 0 T; 32 other;
ugcgugcuuu uuguucuaag gugcaucuag ugcagauagu gaaguagacu agcaucuacu 60
gcccuaagug cuccuucugg cauaagaagu uauguc 96
//
ID rno-mir-19b-1 standard; RNA; RNO; 87 BP.
XX
AC MI0000847;
XX
DE Rattus norvegicus miR-19b-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314186; Mir19b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0017096"
FT /product="rno-miR-19b-1-5p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
FT miRNA 54..76
FT /accession="MIMAT0000788"
FT /product="rno-miR-19b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
XX
SQ Sequence 87 BP; 19 A; 16 C; 22 G; 0 T; 30 other;
cacuggucua ugguuaguuu ugcagguuug cauccagcug uauaauauuc ugcugugcaa 60
auccaugcaa aacugacugu gguggug 87
//
ID rno-mir-19a standard; RNA; RNO; 82 BP.
XX
AC MI0000849;
XX
DE Rattus norvegicus miR-19a stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314151; Mir19a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..32
FT /accession="MIMAT0017098"
FT /product="rno-miR-19a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 49..71
FT /accession="MIMAT0000789"
FT /product="rno-miR-19a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000688"
XX
SQ Sequence 82 BP; 21 A; 17 C; 20 G; 0 T; 24 other;
gcagcccucu guucguuuug cauaguugca cuacaagaag aauguaguug ugcaaaucua 60
ugcaaaacug augguggccu gc 82
//
ID rno-mir-21 standard; RNA; RNO; 92 BP.
XX
AC MI0000850;
XX
DE Rattus norvegicus miR-21 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314000; Mir21.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0000790"
FT /product="rno-miR-21-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT miRNA 56..77
FT /accession="MIMAT0004711"
FT /product="rno-miR-21-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [5]"
XX
SQ Sequence 92 BP; 19 A; 19 C; 24 G; 0 T; 30 other;
uguaccaccu ugucggguag cuuaucagac ugauguugac uguugaaucu cauggcaaca 60
gcagucgaug ggcugucuga cauuuuggua uc 92
//
ID rno-mir-22 standard; RNA; RNO; 95 BP.
XX
AC MI0000851;
XX
DE Rattus norvegicus miR-22 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314001; Mir22.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0003152"
FT /product="rno-miR-22-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], SOLiD [5]"
FT miRNA 57..78
FT /accession="MIMAT0000791"
FT /product="rno-miR-22-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
XX
SQ Sequence 95 BP; 19 A; 28 C; 24 G; 0 T; 24 other;
accuggcuga gccgcaguag uucuucagug gcaagcuuua uguccugacc cagcuaaagc 60
ugccaguuga agaacuguug cccucugcca cuggc 95
//
ID rno-mir-23a standard; RNA; RNO; 75 BP.
XX
AC MI0000852;
XX
DE Rattus norvegicus miR-23a stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314228; Mir23a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0004712"
FT /product="rno-miR-23a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT miRNA 46..66
FT /accession="MIMAT0000792"
FT /product="rno-miR-23a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000571"
XX
SQ Sequence 75 BP; 15 A; 20 C; 23 G; 0 T; 17 other;
cggccggcug ggguuccugg ggaugggauu ugaugccagu cacaaaucac auugccaggg 60
auuuccaacu gaccc 75
//
ID rno-mir-23b standard; RNA; RNO; 97 BP.
XX
AC MI0000853;
XX
DE Rattus norvegicus miR-23b stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314002; Mir23b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0017099"
FT /product="rno-miR-23b-5p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
FT miRNA 58..78
FT /accession="MIMAT0000793"
FT /product="rno-miR-23b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000141"
XX
SQ Sequence 97 BP; 20 A; 26 C; 23 G; 0 T; 28 other;
cucaccugcu cuggcugcuu ggguuccugg caugcugauu ugugacuuga gauuaaaauc 60
acauugccag ggauuaccac gcaaccauga ccuuggc 97
//
ID rno-mir-24-1 standard; RNA; RNO; 68 BP.
XX
AC MI0000854;
XX
DE Rattus norvegicus miR-24-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314003; Mir24-1.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0003153"
FT /product="rno-miR-24-1-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Northern [2], SOLiD [5]"
FT miRNA 44..65
FT /accession="MIMAT0000794"
FT /product="rno-miR-24-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [2], SOLiD [5]"
FT /similarity="MI0000231"
XX
SQ Sequence 68 BP; 16 A; 19 C; 16 G; 0 T; 17 other;
cuccggugcc uacugagcug auaucaguuc ucauuucaca cacuggcuca guucagcagg 60
aacaggag 68
//
ID rno-mir-24-2 standard; RNA; RNO; 108 BP.
XX
AC MI0000855;
XX
DE Rattus norvegicus miR-24-2 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314278; Mir24-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0005441"
FT /product="rno-miR-24-2-5p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [5]"
FT miRNA 61..82
FT /accession="MIMAT0000794"
FT /product="rno-miR-24-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [2], SOLiD [5]"
FT /similarity="MI0000572"
XX
SQ Sequence 108 BP; 21 A; 36 C; 29 G; 0 T; 22 other;
gccucucccu gggcuccgcc uccugugccu acugagcuga aacaguugau uccagugcac 60
uggcucaguu cagcaggaac aggaguccag cccccauagg agcuggca 108
//
ID rno-mir-25 standard; RNA; RNO; 84 BP.
XX
AC MI0000856;
XX
DE Rattus norvegicus miR-25 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314004; Mir25.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0004713"
FT /product="rno-miR-25-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT miRNA 52..73
FT /accession="MIMAT0000795"
FT /product="rno-miR-25-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000082"
XX
SQ Sequence 84 BP; 13 A; 23 C; 31 G; 0 T; 17 other;
ggccaguguu gagaggcgga gacacgggca auugcuggac gcugcccugg gcauugcacu 60
ugucucgguc ugacagugcc ggcc 84
//
ID rno-mir-26a standard; RNA; RNO; 90 BP.
XX
AC MI0000857;
XX
DE Rattus norvegicus miR-26a stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314290; Mir26a.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000796"
FT /product="rno-miR-26a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000573"
FT miRNA 55..75
FT /accession="MIMAT0017100"
FT /product="rno-miR-26a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 90 BP; 16 A; 22 C; 31 G; 0 T; 21 other;
aaggccgugg ccuuguucaa guaauccagg auaggcugug caggucccaa ggggccuauu 60
cuugguuacu ugcacgggga cgcgggccug 90
//
ID rno-mir-26b standard; RNA; RNO; 85 BP.
XX
AC MI0000858;
XX
DE Rattus norvegicus miR-26b stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314229; Mir26b.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0000797"
FT /product="rno-miR-26b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000575"
FT miRNA 51..72
FT /accession="MIMAT0004714"
FT /product="rno-miR-26b-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
XX
SQ Sequence 85 BP; 12 A; 23 C; 28 G; 0 T; 22 other;
ugcccgggac ccaguucaag uaauucagga uagguugugg ugcuggccag ccuguucucc 60
auuacuuggc ucgggggccg gugcc 85
//
ID rno-mir-27b standard; RNA; RNO; 97 BP.
XX
AC MI0000859;
XX
DE Rattus norvegicus miR-27b stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314005; Mir27b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..42
FT /accession="MIMAT0017101"
FT /product="rno-miR-27b-5p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
FT miRNA 61..81
FT /accession="MIMAT0000798"
FT /product="rno-miR-27b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000440"
XX
SQ Sequence 97 BP; 23 A; 19 C; 27 G; 0 T; 28 other;
accucucuaa caaggugcag agcuuagcug auuggugaac agugauuggu uuccgcuuug 60
uucacagugg cuaaguucug caccugaaga gaaggug 97
//
ID rno-mir-27a standard; RNA; RNO; 87 BP.
XX
AC MI0000860;
XX
DE Rattus norvegicus miR-27a stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314006; Mir27a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0004715"
FT /product="rno-miR-27a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [4]"
FT miRNA 56..76
FT /accession="MIMAT0000799"
FT /product="rno-miR-27a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000578"
XX
SQ Sequence 87 BP; 16 A; 24 C; 27 G; 0 T; 20 other;
uggccugugg agcagggcuu agcugcuugu gagcaagguc uacagcaaag ucguguucac 60
aguggcuaag uuccgccccc uggaccc 87
//
ID rno-mir-28 standard; RNA; RNO; 86 BP.
XX
AC MI0000861;
XX
DE Rattus norvegicus miR-28 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314152; Mir28.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000800"
FT /product="rno-miR-28-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000086"
FT miRNA 54..75
FT /accession="MIMAT0004716"
FT /product="rno-miR-28-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
XX
SQ Sequence 86 BP; 16 A; 25 C; 21 G; 0 T; 24 other;
ggucccuacc cgcaaggagc ucacagucua uugaguuccu uuucugauuc ucccacuaga 60
uugugagcuc cuggagggca ggcacu 86
//
ID rno-mir-29b-2 standard; RNA; RNO; 81 BP.
XX
AC MI0000862;
XX
DE Rattus norvegicus miR-29b-2 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314007; Mir29b-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004717"
FT /product="rno-miR-29b-5p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [5]"
FT miRNA 52..74
FT /accession="MIMAT0000801"
FT /product="rno-miR-29b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT /similarity="MI0000107"
XX
SQ Sequence 81 BP; 17 A; 14 C; 18 G; 0 T; 32 other;
cuucuggaag cugguuucac augguggcuu agauuuuucc aucuuuguau cuagcaccau 60
uugaaaucag uguuuuagga g 81
//
ID rno-mir-29a standard; RNA; RNO; 88 BP.
XX
AC MI0000863;
XX
DE Rattus norvegicus miR-29a stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314230; Mir29a.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0004718"
FT /product="rno-miR-29a-5p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [5]"
FT miRNA 54..75
FT /accession="MIMAT0000802"
FT /product="rno-miR-29a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
XX
SQ Sequence 88 BP; 24 A; 14 C; 20 G; 0 T; 30 other;
accccuuaga ggaugacuga uuucuuuugg uguucagagu caauagaauu uucuagcacc 60
aucugaaauc gguuauaaug auugggga 88
//
ID rno-mir-29b-1 standard; RNA; RNO; 81 BP.
XX
AC MI0000864;
XX
DE Rattus norvegicus miR-29b-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314008; Mir29b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0005445"
FT /product="rno-miR-29b-1-5p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [5]"
FT miRNA 51..73
FT /accession="MIMAT0000801"
FT /product="rno-miR-29b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT /similarity="MI0000105"
XX
SQ Sequence 81 BP; 19 A; 10 C; 21 G; 0 T; 31 other;
cuucaggaag cugguuucau auggugguuu agauuuaaau agugauuguc uagcaccauu 60
ugaaaucagu guucuuggug g 81
//
ID rno-mir-29c-1 standard; RNA; RNO; 88 BP.
XX
AC MI0000865;
XX
DE Rattus norvegicus miR-29c-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314187; Mir29c.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0003154"
FT /product="rno-miR-29c-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [5]"
FT miRNA 54..75
FT /accession="MIMAT0000803"
FT /product="rno-miR-29c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT /similarity="MI0000577"
XX
SQ Sequence 88 BP; 18 A; 17 C; 22 G; 0 T; 31 other;
aucucuuaca caggcugacc gauuucuccu gguguucaga gucuguuuuu gucuagcacc 60
auuugaaauc gguuaugaug uaggggga 88
//
ID rno-mir-30c-1 standard; RNA; RNO; 89 BP.
XX
AC MI0000866;
XX
DE Rattus norvegicus miR-30c-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [6]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314009; Mir30c-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0000804"
FT /product="rno-miR-30c-5p"
FT /evidence=experimental
FT /experiment="cloned [1-5], SOLiD [6]"
FT miRNA 56..77
FT /accession="MIMAT0004719"
FT /product="rno-miR-30c-1-3p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [6]"
XX
SQ Sequence 89 BP; 18 A; 19 C; 25 G; 0 T; 27 other;
accauguugu agugugugua aacauccuac acucucagcu gugagcucaa gguggcuggg 60
agaggguugu uuacuccuuc ugccaugga 89
//
ID rno-mir-30e standard; RNA; RNO; 92 BP.
XX
AC MI0000867;
XX
DE Rattus norvegicus miR-30e stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314153; Mir30e.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000805"
FT /product="rno-miR-30e-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000259"
FT miRNA 59..80
FT /accession="MIMAT0004720"
FT /product="rno-miR-30e-3p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
XX
SQ Sequence 92 BP; 20 A; 18 C; 29 G; 0 T; 25 other;
gggcagucuu ugcuacugua aacauccuug acuggaagcu guaagguguu gagaggagcu 60
uucagucgga uguuuacagc ggcaggcugc ca 92
//
ID rno-mir-30b standard; RNA; RNO; 87 BP.
XX
AC MI0000868;
XX
DE Rattus norvegicus miR-30b stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314231; Mir30b.
XX
CC Landgraf et al. show that miRNA sequences from both arms of this hairpin
CC precursor are similarly expressed [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000806"
FT /product="rno-miR-30b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1,3], SOLiD [5]"
FT miRNA 54..75
FT /accession="MIMAT0004721"
FT /product="rno-miR-30b-3p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [5]"
XX
SQ Sequence 87 BP; 19 A; 18 C; 22 G; 0 T; 28 other;
ccgaguuuca guucauguaa acauccuaca cucagcuguc auacaugagu uggcugggau 60
guggauguuu acgucagcug ucuugga 87
//
ID rno-mir-30d standard; RNA; RNO; 82 BP.
XX
AC MI0000869;
XX
DE Rattus norvegicus miR-30d stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314010; Mir30d.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0000807"
FT /product="rno-miR-30d-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT miRNA 52..73
FT /accession="MIMAT0004722"
FT /product="rno-miR-30d-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
XX
SQ Sequence 82 BP; 19 A; 22 C; 19 G; 0 T; 22 other;
aagucugugu cuguaaacau ccccgacugg aagcuguaag ccacagccaa gcuuucaguc 60
agauguuugc ugcuacuggc uc 82
//
ID rno-mir-30a standard; RNA; RNO; 71 BP.
XX
AC MI0000870;
XX
DE Rattus norvegicus miR-30a stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314011; Mir30a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000808"
FT /product="rno-miR-30a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000144"
FT miRNA 47..68
FT /accession="MIMAT0000809"
FT /product="rno-miR-30a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000144"
XX
SQ Sequence 71 BP; 18 A; 17 C; 19 G; 0 T; 17 other;
gcaacuguaa acauccucga cuggaagcug ugaagccaca aaugggcuuu cagucggaug 60
uuugcagcug c 71
//
ID rno-mir-30c-2 standard; RNA; RNO; 84 BP.
XX
AC MI0000871;
XX
DE Rattus norvegicus miR-30c-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [6]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314012; Mir30c-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0000804"
FT /product="rno-miR-30c-5p"
FT /evidence=experimental
FT /experiment="cloned [1-5], SOLiD [6]"
FT miRNA 54..75
FT /accession="MIMAT0005442"
FT /product="rno-miR-30c-2-3p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [6]"
XX
SQ Sequence 84 BP; 25 A; 18 C; 19 G; 0 T; 22 other;
gagugacaga uacuguaaac auccuacacu cucagcugug aaaaguaaga aagcugggag 60
aaggcuguuu acucucucug ccuu 84
//
ID rno-mir-31a standard; RNA; RNO; 106 BP.
XX
AC MI0000872;
XX
DE Rattus norvegicus miR-31a stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314232; Mir31.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..49
FT /accession="MIMAT0000810"
FT /product="rno-miR-31a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000579"
FT miRNA 64..86
FT /accession="MIMAT0017102"
FT /product="rno-miR-31a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 106 BP; 27 A; 25 C; 27 G; 0 T; 27 other;
ugcuccugaa acuuggaacu ggagaggagg caagaugcug gcauagcugu ugaacugaga 60
accugcuaug ccaacauauu gccaucuuuc cugucugaca gcagcu 106
//
ID rno-mir-32 standard; RNA; RNO; 70 BP.
XX
AC MI0000873;
XX
DE Rattus norvegicus miR-32 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314013; Mir32.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000811"
FT /product="rno-miR-32-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000090"
FT miRNA 46..67
FT /accession="MIMAT0017103"
FT /product="rno-miR-32-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 70 BP; 16 A; 12 C; 17 G; 0 T; 25 other;
ggggauauug cacauuacua aguugcaugu ugucacggcc ucaaugcaau uuagugugug 60
ugauauucuc 70
//
ID rno-mir-33 standard; RNA; RNO; 69 BP.
XX
AC MI0000874;
XX
DE Rattus norvegicus miR-33 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314214; Mir33.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0000812"
FT /product="rno-miR-33-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000091"
FT miRNA 46..66
FT /accession="MIMAT0017104"
FT /product="rno-miR-33-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 69 BP; 12 A; 16 C; 19 G; 0 T; 22 other;
ccguggugca uuguaguugc auugcauguu cuggcaguac cugugcaaug uuuccacagu 60
gcaucacgg 69
//
ID rno-mir-34b standard; RNA; RNO; 84 BP.
XX
AC MI0000875;
XX
DE Rattus norvegicus miR-34b stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314188; Mir34b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0000813"
FT /product="rno-miR-34b-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0000404"
FT miRNA 51..72
FT /accession="MIMAT0017105"
FT /product="rno-miR-34b-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 84 BP; 22 A; 19 C; 21 G; 0 T; 22 other;
gugcucgguu uguaggcagu guaauuagcu gauuguagug cggugcugac aaucacuaac 60
uccacugcca ucaaaacaag gcac 84
//
ID rno-mir-34c standard; RNA; RNO; 77 BP.
XX
AC MI0000876;
XX
DE Rattus norvegicus miR-34c stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314014; Mir34c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0000814"
FT /product="rno-miR-34c-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000403"
FT miRNA 46..67
FT /accession="MIMAT0004723"
FT /product="rno-miR-34c-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 77 BP; 27 A; 16 C; 15 G; 0 T; 19 other;
agucuaguua cuaggcagug uaguuagcug auugcuaaua guaccaauca cuaaccacac 60
agccagguaa aaagacu 77
//
ID rno-mir-34a standard; RNA; RNO; 102 BP.
XX
AC MI0000877;
XX
DE Rattus norvegicus miR-34a stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314015; Mir34a.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0000815"
FT /product="rno-miR-34a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT miRNA 64..85
FT /accession="MIMAT0017106"
FT /product="rno-miR-34a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 102 BP; 23 A; 18 C; 29 G; 0 T; 32 other;
ccggcuguga guaauucuuu ggcagugucu uagcugguug uugugaguau uagcuaagga 60
agcaaucagc aaguauacug cccuagaagu gcugcacguu gu 102
//
ID rno-mir-92a-1 standard; RNA; RNO; 78 BP.
XX
AC MI0000878;
XX
DE Rattus norvegicus miR-92a-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314233; Mir92a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0017107"
FT /product="rno-miR-92a-1-5p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
FT miRNA 48..68
FT /accession="MIMAT0000816"
FT /product="rno-miR-92a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000719"
XX
SQ Sequence 78 BP; 11 A; 15 C; 21 G; 0 T; 31 other;
cuuucuacac agguugggau uugucgcaau gcuguguuuc uguauaguau ugcacuuguc 60
ccggccuguu gaguuugg 78
//
ID rno-mir-93 standard; RNA; RNO; 87 BP.
XX
AC MI0000880;
XX
DE Rattus norvegicus miR-93 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314154; Mir93.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0000817"
FT /product="rno-miR-93-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT miRNA 53..75
FT /accession="MIMAT0017109"
FT /product="rno-miR-93-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 87 BP; 17 A; 26 C; 25 G; 0 T; 19 other;
agucaugggg gcuccaaagu gcuguucgug cagguagugc auugccugac cuacugcuga 60
gcuagcacuu cccgagcccc caggaca 87
//
ID rno-mir-96 standard; RNA; RNO; 106 BP.
XX
AC MI0000881;
XX
DE Rattus norvegicus miR-96 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314017; Mir96.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0000818"
FT /product="rno-miR-96-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000583"
FT miRNA 66..87
FT /accession="MIMAT0017110"
FT /product="rno-miR-96-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 106 BP; 20 A; 28 C; 27 G; 0 T; 31 other;
ccaguaccau cugcuuggcc gauuuuggca cuagcacauu uuugcuugug ucucuccgcu 60
cugagcaauc augugcagug ccaauauggg aaaagcgggc ugcugc 106
//
ID rno-mir-98 standard; RNA; RNO; 108 BP.
XX
AC MI0000882;
XX
DE Rattus norvegicus miR-98 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314018; Mir98.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000819"
FT /product="rno-miR-98-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT miRNA 74..94
FT /accession="MIMAT0017111"
FT /product="rno-miR-98-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 108 BP; 26 A; 17 C; 31 G; 0 T; 34 other;
cugcacaugc uggggugagg uaguaaguug uauuguugug ggguagggau uuuaggcccc 60
aauaagaaga uaacuauaca acuuacuacu uucccuggug uguggcau 108
//
ID rno-mir-99a standard; RNA; RNO; 81 BP.
XX
AC MI0000883;
XX
DE Rattus norvegicus miR-99a stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [6]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314019; Mir99a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0000820"
FT /product="rno-miR-99a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-5], SOLiD [6]"
FT miRNA 50..71
FT /accession="MIMAT0004724"
FT /product="rno-miR-99a-3p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [6]"
XX
SQ Sequence 81 BP; 16 A; 19 C; 24 G; 0 T; 22 other;
cccauuggca uaaacccgua gauccgaucu uguggugaag uggaccgcac aagcucguuu 60
cuaugggucu guggcagugu g 81
//
ID rno-mir-99b standard; RNA; RNO; 70 BP.
XX
AC MI0000884;
XX
DE Rattus norvegicus miR-99b stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314189; Mir99b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000821"
FT /product="rno-miR-99b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1,3], SOLiD [5]"
FT miRNA 45..66
FT /accession="MIMAT0004725"
FT /product="rno-miR-99b-3p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [5]"
XX
SQ Sequence 70 BP; 10 A; 26 C; 21 G; 0 T; 13 other;
ggcacccacc cguagaaccg accuugcggg gccuucgccg cacacaagcu cgugucugug 60
gguccguguc 70
//
ID rno-mir-100 standard; RNA; RNO; 80 BP.
XX
AC MI0000885;
XX
DE Rattus norvegicus miR-100 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314234; Mir100.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0000822"
FT /product="rno-miR-100-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], SOLiD [3]"
FT miRNA 48..66
FT /accession="MIMAT0017112"
FT /product="rno-miR-100-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 80 BP; 18 A; 20 C; 19 G; 0 T; 23 other;
ccuguugcca caaacccgua gauccgaacu ugugcugacc augcacacaa gcuugugucu 60
auagguaugu gucuguuagg 80
//
ID rno-mir-101a standard; RNA; RNO; 75 BP.
XX
AC MI0000886;
XX
DE Rattus norvegicus miR-101a stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314279; Mir101a.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0004726"
FT /product="rno-miR-101a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT miRNA 47..67
FT /accession="MIMAT0000823"
FT /product="rno-miR-101a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000103"
XX
SQ Sequence 75 BP; 19 A; 16 C; 19 G; 0 T; 21 other;
ugcccuggcu caguuaucac agugcugaug cuguccauuc uaaagguaca guacugugau 60
aacugaagga uggca 75
//
ID rno-mir-103-2 standard; RNA; RNO; 86 BP.
XX
AC MI0000887;
XX
DE Rattus norvegicus miR-103-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314020; Mir103-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..31
FT /accession="MIMAT0017113"
FT /product="rno-miR-103-2-5p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
FT miRNA 52..74
FT /accession="MIMAT0000824"
FT /product="rno-miR-103-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1-2], SOLiD [4]"
XX
SQ Sequence 86 BP; 22 A; 19 C; 20 G; 0 T; 25 other;
gucuucgugc uuucagcuuc uuuacagugc ugccuuguag cauucagguc aagcagcauu 60
guacagggcu augaaagaac caagaa 86
//
ID rno-mir-103-1 standard; RNA; RNO; 86 BP.
XX
AC MI0000888;
XX
DE Rattus norvegicus miR-103-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314021; Mir103-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0017114"
FT /product="rno-miR-103-1-5p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
FT miRNA 52..74
FT /accession="MIMAT0000824"
FT /product="rno-miR-103-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1,3], SOLiD [5]"
XX
SQ Sequence 86 BP; 18 A; 20 C; 21 G; 0 T; 27 other;
uucuuacugc ccucggcuuc uuuacagugc ugccuuguug cauauggauc aagcagcauu 60
guacagggcu augaaggcau ugagac 86
//
ID rno-mir-106b standard; RNA; RNO; 82 BP.
XX
AC MI0000889;
XX
DE Rattus norvegicus miR-106b stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314235; Mir106b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0000825"
FT /product="rno-miR-106b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000407"
FT miRNA 52..73
FT /accession="MIMAT0004727"
FT /product="rno-miR-106b-3p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
XX
SQ Sequence 82 BP; 14 A; 22 C; 25 G; 0 T; 21 other;
ccugcuggga cuaaagugcu gacagugcag auaguggucc ucucugugcu accgcacugu 60
ggguacuugc ugcuccagca gg 82
//
ID rno-mir-107 standard; RNA; RNO; 87 BP.
XX
AC MI0000890;
XX
DE Rattus norvegicus miR-107 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314022; Mir107.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0017115"
FT /product="rno-miR-107-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 52..74
FT /accession="MIMAT0000826"
FT /product="rno-miR-107-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000114"
XX
SQ Sequence 87 BP; 20 A; 19 C; 21 G; 0 T; 27 other;
uucucucugc uuuaagcuuc uuuacagugu ugccuugugg cauggaguuc aagcagcauu 60
guacagggcu aucaaagcac agagagc 87
//
ID rno-mir-122 standard; RNA; RNO; 85 BP.
XX
AC MI0000891;
XX
DE Rattus norvegicus miR-122 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314023; Mir122.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000827"
FT /product="rno-miR-122-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000256"
FT miRNA 51..69
FT /accession="MIMAT0017116"
FT /product="rno-miR-122-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 85 BP; 25 A; 22 C; 18 G; 0 T; 20 other;
ccuuagcaga gcucuggagu gugacaaugg uguuuguguc caaaacauca aacgccauca 60
ucacacuaaa cagcuacugc uaggc 85
//
ID rno-mir-124-3 standard; RNA; RNO; 87 BP.
XX
AC MI0000892;
XX
DE Rattus norvegicus miR-124-3 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314155; Mir124-3.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0004728"
FT /product="rno-miR-124-5p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
FT miRNA 53..72
FT /accession="MIMAT0000828"
FT /product="rno-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], SOLiD [4]"
XX
SQ Sequence 87 BP; 20 A; 23 C; 24 G; 0 T; 20 other;
ugagggcccc ucugcguguu cacagcggac cuugauuuaa ugucuauaca auuaaggcac 60
gcggugaaug ccaagagagg cgccucc 87
//
ID rno-mir-124-1 standard; RNA; RNO; 85 BP.
XX
AC MI0000893;
XX
DE Rattus norvegicus miR-124-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314291; Mir124-1.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0004728"
FT /product="rno-miR-124-5p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
FT miRNA 53..72
FT /accession="MIMAT0000828"
FT /product="rno-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], SOLiD [4]"
XX
SQ Sequence 85 BP; 21 A; 21 C; 22 G; 0 T; 21 other;
aggccucucu cuccguguuc acagcggacc uugauuuaaa uguccauaca auuaaggcac 60
gcggugaaug ccaagaaugg ggcug 85
//
ID rno-mir-124-2 standard; RNA; RNO; 109 BP.
XX
AC MI0000894;
XX
DE Rattus norvegicus miR-124-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314024; Mir124-2.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0004728"
FT /product="rno-miR-124-5p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
FT miRNA 62..81
FT /accession="MIMAT0000828"
FT /product="rno-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], SOLiD [4]"
XX
SQ Sequence 109 BP; 30 A; 27 C; 27 G; 0 T; 25 other;
aucaagauca gagacucugc ucuccguguu cacagcggac cuugauuuaa ugucauacaa 60
uuaaggcacg cggugaaugc caagagcgga gccuacggcu gcacuugaa 109
//
ID rno-mir-125a standard; RNA; RNO; 85 BP.
XX
AC MI0000895;
XX
DE Rattus norvegicus miR-125a stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314236; Mir125a.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0000829"
FT /product="rno-miR-125a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000151"
FT miRNA 53..74
FT /accession="MIMAT0004729"
FT /product="rno-miR-125a-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
XX
SQ Sequence 85 BP; 11 A; 25 C; 30 G; 0 T; 19 other;
ugccggccuc ugggucccug agacccuuua accugugagg acguccaggg ucacagguga 60
gguucuuggg agccuggcgc cuggc 85
//
ID rno-mir-125b-1 standard; RNA; RNO; 87 BP.
XX
AC MI0000896;
XX
DE Rattus norvegicus miR-125b-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [6]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314156; Mir125b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000830"
FT /product="rno-miR-125b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-5], Northern [1,3], SOLiD [6]"
FT miRNA 55..76
FT /accession="MIMAT0004730"
FT /product="rno-miR-125b-1-3p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [6]"
XX
SQ Sequence 87 BP; 14 A; 25 C; 23 G; 0 T; 25 other;
ugcgcucccc ucagucccug agacccuaac uugugauguu uaccguuuaa auccacgggu 60
uaggcucuug ggagcugcga gucgugc 87
//
ID rno-mir-125b-2 standard; RNA; RNO; 88 BP.
XX
AC MI0000897;
XX
DE Rattus norvegicus miR-125b-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [6]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314025; Mir125b-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000830"
FT /product="rno-miR-125b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-5], Northern [1,3], SOLiD [6]"
FT miRNA 56..77
FT /accession="MIMAT0026467"
FT /product="rno-miR-125b-2-3p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [6]"
XX
SQ Sequence 88 BP; 22 A; 21 C; 22 G; 0 T; 23 other;
accagacuuu uccuaguccc ugagacccua acuugugagg uauuuuagua acaucacaag 60
ucaggcucuu gggaccuagg cggagagg 88
//
ID rno-mir-126a standard; RNA; RNO; 73 BP.
XX
AC MI0000898;
XX
DE Rattus norvegicus miR-126a stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314237; Mir126.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0000831"
FT /product="rno-miR-126a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000153"
FT miRNA 46..67
FT /accession="MIMAT0000832"
FT /product="rno-miR-126a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000153"
XX
SQ Sequence 73 BP; 19 A; 16 C; 16 G; 0 T; 22 other;
ugacagcaca uuauuacuuu ugguacgcgc ugugacacuu caaacucgua ccgugaguaa 60
uaaugcgugg uca 73
//
ID rno-mir-127 standard; RNA; RNO; 97 BP.
XX
AC MI0000899;
XX
DE Rattus norvegicus miR-127 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314190; Mir127.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0017117"
FT /product="rno-miR-127-5p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
FT miRNA 57..78
FT /accession="MIMAT0000833"
FT /product="rno-miR-127-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
XX
SQ Sequence 97 BP; 20 A; 25 C; 25 G; 0 T; 27 other;
uuugaucacu gucuccagcc ugcugaagcu cagagggcuc ugauucagaa agaucaucgg 60
auccgucuga gcuuggcugg ucggaagucu caucauc 97
//
ID rno-mir-128-1 standard; RNA; RNO; 82 BP.
XX
AC MI0000900;
XX
DE Rattus norvegicus miR-128-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314026; Mir128-1.
XX
CC The most commonly cloned mature sequences derived from the previously
CC annotated mir-128a and mir-128b were shown by Landgraf et al to be
CC identical [3]. The sequences are therefore renamed mir-128-1 and
CC mir-128-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0017118"
FT /product="rno-miR-128-1-5p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
FT miRNA 50..70
FT /accession="MIMAT0000834"
FT /product="rno-miR-128-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000155"
XX
SQ Sequence 82 BP; 13 A; 19 C; 22 G; 0 T; 28 other;
ugagcuguug gauucggggc cguagcacug ucugagaggu uuacauuucu cacagugaac 60
cggucucuuu uucagcugcu uc 82
//
ID rno-mir-128-2 standard; RNA; RNO; 84 BP.
XX
AC MI0000901;
XX
DE Rattus norvegicus miR-128-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314027; Mir128-2.
XX
CC The most commonly cloned mature sequences derived from the previously
CC annotated mir-128a and mir-128b were shown by Landgraf et al to be
CC identical [3]. The sequences are therefore renamed mir-128-1 and
CC mir-128-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0017119"
FT /product="rno-miR-128-2-5p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
FT miRNA 52..72
FT /accession="MIMAT0000834"
FT /product="rno-miR-128-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1], SOLiD [5]"
XX
SQ Sequence 84 BP; 17 A; 18 C; 29 G; 0 T; 20 other;
ugugcagugg gaaggggggc cgaugcacug uaagagagug aguagcaggu cucacaguga 60
accggucucu uucccuacug uguc 84
//
ID rno-mir-129-1 standard; RNA; RNO; 72 BP.
XX
AC MI0000902;
XX
DE Rattus norvegicus miR-129-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314157; Mir129-1.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0000600"
FT /product="rno-miR-129-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000222"
FT miRNA 49..67
FT /accession="MIMAT0017120"
FT /product="rno-miR-129-1-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 72 BP; 13 A; 19 C; 17 G; 0 T; 23 other;
ugggucuuuu ugcggucugg gcuugcuguu cucuccacag uagucaggaa gcccuuaccc 60
caaaaaguau cu 72
//
ID rno-mir-130a standard; RNA; RNO; 88 BP.
XX
AC MI0000903;
XX
DE Rattus norvegicus miR-130a stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314238; Mir130a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0017121"
FT /product="rno-miR-130a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
FT miRNA 55..76
FT /accession="MIMAT0000836"
FT /product="rno-miR-130a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1,3], SOLiD [5]"
XX
SQ Sequence 88 BP; 17 A; 21 C; 24 G; 0 T; 26 other;
ugcugcuggc cggagcucuu uucacauugu gcuacugucu acacguguac cgagcagugc 60
aauguuaaaa gggcaucggc cuuguagu 88
//
ID rno-mir-130b standard; RNA; RNO; 82 BP.
XX
AC MI0000904;
XX
DE Rattus norvegicus miR-130b stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314028; Mir130b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0017122"
FT /product="rno-miR-130b-5p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
FT miRNA 51..72
FT /accession="MIMAT0000837"
FT /product="rno-miR-130b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1-2], SOLiD [4]"
XX
SQ Sequence 82 BP; 15 A; 22 C; 25 G; 0 T; 20 other;
ggcuugcugg acacucuuuc ccuguugcac uacugugggc cucugggaag cagugcaaug 60
augaaagggc auccgucagg cc 82
//
ID rno-mir-132 standard; RNA; RNO; 101 BP.
XX
AC MI0000905;
XX
DE Rattus norvegicus miR-132 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314029; Mir132.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0017123"
FT /product="rno-miR-132-5p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
FT miRNA 59..80
FT /accession="MIMAT0000838"
FT /product="rno-miR-132-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
XX
SQ Sequence 101 BP; 17 A; 38 C; 28 G; 0 T; 18 other;
ccgcccccgc gucuccaggg caaccguggc uuucgauugu uacuguggga accggaggua 60
acagucuaca gccauggucg ccccgcagca cgcccacgcu c 101
//
ID rno-mir-133a standard; RNA; RNO; 87 BP.
XX
AC MI0000906;
XX
DE Rattus norvegicus miR-133a stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314030; Mir133a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0017124"
FT /product="rno-miR-133a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 52..73
FT /accession="MIMAT0000839"
FT /product="rno-miR-133a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000820"
XX
SQ Sequence 87 BP; 24 A; 21 C; 17 G; 0 T; 25 other;
caaugcuuug cuaaagcugg uaaaauggaa ccaaaucgcc ucuucaaugg auuugguccc 60
cuucaaccag cuguagcuau gcauuga 87
//
ID rno-mir-134 standard; RNA; RNO; 73 BP.
XX
AC MI0000907;
XX
DE Rattus norvegicus miR-134 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314191; Mir134.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0000840"
FT /product="rno-miR-134-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000474"
FT miRNA 47..68
FT /accession="MIMAT0017125"
FT /product="rno-miR-134-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 73 BP; 12 A; 22 C; 22 G; 0 T; 17 other;
cagggugugu gacugguuga ccagaggggc gugcacuuug uucacccugu gggccaccua 60
gucaccaacc cuc 73
//
ID rno-mir-135a standard; RNA; RNO; 100 BP.
XX
AC MI0000908;
XX
DE Rattus norvegicus miR-135a stem-loop
XX
RN [1]
RX PUBMED; 16471176.
RA Naraba H, Iwai N;
RT "Assessment of the microRNA system in salt-sensitive hypertension";
RL Hypertens Res. 28:819-826(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314280; Mir135a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0000841"
FT /product="rno-miR-135a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000715"
FT miRNA 62..83
FT /accession="MIMAT0004732"
FT /product="rno-miR-135a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
XX
SQ Sequence 100 BP; 32 A; 14 C; 19 G; 0 T; 35 other;
agauaaauuc acucuagugc uuuauggcuu uuuauuccua ugugaucgua auaaagucuc 60
auguagggau ggaagccaug aaauacauug ugaaaauuca 100
//
ID rno-mir-136 standard; RNA; RNO; 82 BP.
XX
AC MI0000909;
XX
DE Rattus norvegicus miR-136 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314239; Mir136.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0000842"
FT /product="rno-miR-136-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000475"
FT miRNA 49..70
FT /accession="MIMAT0004733"
FT /product="rno-miR-136-3p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
XX
SQ Sequence 82 BP; 17 A; 18 C; 19 G; 0 T; 28 other;
ugagcccucg gaggacucca uuuguuuuga ugauggauuc uuaagcucca ucaucgucuc 60
aaaugagucu ucagaggguu cu 82
//
ID rno-mir-137 standard; RNA; RNO; 102 BP.
XX
AC MI0000910;
XX
DE Rattus norvegicus miR-137 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314031; Mir137.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0017126"
FT /product="rno-miR-137-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 59..81
FT /accession="MIMAT0000843"
FT /product="rno-miR-137-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000163"
XX
SQ Sequence 102 BP; 22 A; 20 C; 31 G; 0 T; 29 other;
ggcccucuga cucucuucgg ugacggguau ucuugggugg auaauacgga uuacguuguu 60
auugcuuaag aauacgcgua gucgaggaga guaccagcgg ca 102
//
ID rno-mir-138-2 standard; RNA; RNO; 82 BP.
XX
AC MI0000911;
XX
DE Rattus norvegicus miR-138-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314032; Mir138-2.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0000844"
FT /product="rno-miR-138-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1], SOLiD [5]"
FT miRNA 56..76
FT /accession="MIMAT0017127"
FT /product="rno-miR-138-2-3p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
XX
SQ Sequence 82 BP; 16 A; 25 C; 22 G; 0 T; 19 other;
guugcugcag cugguguugu gaaucaggcc gacgagcaac gcauccucuu acccggcuau 60
uucacgacac caggguugca cc 82
//
ID rno-mir-138-1 standard; RNA; RNO; 99 BP.
XX
AC MI0000912;
XX
DE Rattus norvegicus miR-138-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314033; Mir138-1.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0000844"
FT /product="rno-miR-138-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1], SOLiD [5]"
FT miRNA 61..82
FT /accession="MIMAT0004734"
FT /product="rno-miR-138-1-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [5]"
XX
SQ Sequence 99 BP; 21 A; 25 C; 30 G; 0 T; 23 other;
cucuggcaug guguuguggg acagcuggug uugugaauca ggccguugcc aaucagagaa 60
cggcuacuuc acaacaccag ggucucacug cacugcagg 99
//
ID rno-mir-139 standard; RNA; RNO; 68 BP.
XX
AC MI0000913;
XX
DE Rattus norvegicus miR-139 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314240; Mir139.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000845"
FT /product="rno-miR-139-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000693"
FT miRNA 43..64
FT /accession="MIMAT0004735"
FT /product="rno-miR-139-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
XX
SQ Sequence 68 BP; 11 A; 16 C; 24 G; 0 T; 17 other;
guguauucua cagugcacgu gucuccagug uggcucggag gcuggagacg cggcccuguu 60
ggaguaac 68
//
ID rno-mir-141 standard; RNA; RNO; 94 BP.
XX
AC MI0000914;
XX
DE Rattus norvegicus miR-141 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314215; Mir141.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0017128"
FT /product="rno-miR-141-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 58..79
FT /accession="MIMAT0000846"
FT /product="rno-miR-141-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000457"
XX
SQ Sequence 94 BP; 19 A; 23 C; 27 G; 0 T; 25 other;
ggcugacucu gaguccaucu uccagugcag uguuggaugg uugaaguacg aagcuccuaa 60
cacugucugg uaaagauggc ccccggguca guuc 94
//
ID rno-mir-143 standard; RNA; RNO; 105 BP.
XX
AC MI0000916;
XX
DE Rattus norvegicus miR-143 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314035; Mir143.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..46
FT /accession="MIMAT0017129"
FT /product="rno-miR-143-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 60..81
FT /accession="MIMAT0000849"
FT /product="rno-miR-143-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000459"
XX
SQ Sequence 105 BP; 21 A; 24 C; 37 G; 0 T; 23 other;
gcggagcgcc ugucucccag ccugaggugc agugcugcau cucuggucag uugggagucu 60
gagaugaagc acuguagcuc aggaagggag aagauguucu gcagc 105
//
ID rno-mir-144 standard; RNA; RNO; 83 BP.
XX
AC MI0000917;
XX
DE Rattus norvegicus miR-144 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314192; Mir144.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0017130"
FT /product="rno-miR-144-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 50..69
FT /accession="MIMAT0000850"
FT /product="rno-miR-144-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000168"
XX
SQ Sequence 83 BP; 21 A; 15 C; 22 G; 0 T; 25 other;
gggccuuggc ugggauauca ucauauacug uaaguuugug augagacacu acaguauaga 60
ugauguacua gucuggguac ccc 83
//
ID rno-mir-145 standard; RNA; RNO; 88 BP.
XX
AC MI0000918;
XX
DE Rattus norvegicus miR-145 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314036; Mir145.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000851"
FT /product="rno-miR-145-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000461"
FT miRNA 54..74
FT /accession="MIMAT0017131"
FT /product="rno-miR-145-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 88 BP; 17 A; 22 C; 22 G; 0 T; 27 other;
caccuugucc ucacggucca guuuucccag gaaucccuug gaugcuaaga uggggauucc 60
uggaaauacu guucuugagg ucauggcu 88
//
ID rno-mir-146a standard; RNA; RNO; 95 BP.
XX
AC MI0000919;
XX
DE Rattus norvegicus miR-146a stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314241; Mir146a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000852"
FT /product="rno-miR-146a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000170"
FT miRNA 52..72
FT /accession="MIMAT0017132"
FT /product="rno-miR-146a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 95 BP; 22 A; 19 C; 22 G; 0 T; 32 other;
uguguauccu cagcucugag aacugaauuc cauggguuau agcaauguca gaccugugaa 60
guucaguucu uuagcuggga uagcucuauc gucau 95
//
ID rno-mir-150 standard; RNA; RNO; 85 BP.
XX
AC MI0000920;
XX
DE Rattus norvegicus miR-150 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314158; Mir150.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000853"
FT /product="rno-miR-150-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000172"
FT miRNA 52..70
FT /accession="MIMAT0017133"
FT /product="rno-miR-150-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 85 BP; 14 A; 28 C; 25 G; 0 T; 18 other;
cuucucaagg cccugucucc caacccuugu accagugcug ugccucagac ccugguacag 60
gccuggggga cagggacuug gggac 85
//
ID rno-mir-152 standard; RNA; RNO; 85 BP.
XX
AC MI0000921;
XX
DE Rattus norvegicus miR-152 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314037; Mir152.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0017134"
FT /product="rno-miR-152-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 53..73
FT /accession="MIMAT0000854"
FT /product="rno-miR-152-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000174"
XX
SQ Sequence 85 BP; 15 A; 25 C; 27 G; 0 T; 18 other;
uguuccccgg gcccagguuc ugugauacac uccgacucgg gcucuggagc agucagugca 60
ugacagaacu ugggcccggu aggac 85
//
ID rno-mir-153 standard; RNA; RNO; 87 BP.
XX
AC MI0000922;
XX
DE Rattus norvegicus miR-153 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314038; Mir153.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0017135"
FT /product="rno-miR-153-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 53..74
FT /accession="MIMAT0000855"
FT /product="rno-miR-153-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000175"
XX
SQ Sequence 87 BP; 23 A; 14 C; 24 G; 0 T; 26 other;
agcgguggcc agugucauuu uugugauguu gcagcuagua auaugagccc aguugcauag 60
ucacaaaagu gaucauugga aacugug 87
//
ID rno-mir-154 standard; RNA; RNO; 84 BP.
XX
AC MI0000923;
XX
DE Rattus norvegicus miR-154 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314039; Mir154.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000856"
FT /product="rno-miR-154-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000480"
FT miRNA 51..72
FT /accession="MIMAT0017136"
FT /product="rno-miR-154-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 84 BP; 18 A; 18 C; 19 G; 0 T; 29 other;
gcggugcuug aagauagguu auccguguug ccuucgcuuu auucgugacg aaucauacac 60
gguugaccua uuuuucagua ccaa 84
//
ID rno-mir-181c standard; RNA; RNO; 106 BP.
XX
AC MI0000924;
XX
DE Rattus norvegicus miR-181c stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314242; Mir181c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0000857"
FT /product="rno-miR-181c-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0001380"
FT miRNA 63..84
FT /accession="MIMAT0017137"
FT /product="rno-miR-181c-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 106 BP; 25 A; 29 C; 32 G; 0 T; 20 other;
agaacuugcc aaggguuugg gggaacauuc aaccugucgg ugaguuuggg cagcucagac 60
aaaccaucga ccguugagug gaccccgagg ccuggaacug ccaccc 106
//
ID rno-mir-181a-2 standard; RNA; RNO; 117 BP.
XX
AC MI0000925;
XX
DE Rattus norvegicus miR-181a-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314292; Mir181a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..61
FT /accession="MIMAT0000858"
FT /product="rno-miR-181a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], SOLiD [4]"
FT miRNA 84..102
FT /accession="MIMAT0017138"
FT /product="rno-miR-181a-2-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 117 BP; 39 A; 26 C; 27 G; 0 T; 25 other;
agaugggcaa ccaaggcagc cuuaagagga cuccauggaa cauucaacgc ugucggugag 60
uuugggauuc aaaaacaaaa aaaaccacca accguugacu guaccuuggg auucuua 117
//
ID rno-mir-181b-1 standard; RNA; RNO; 110 BP.
XX
AC MI0000926;
XX
DE Rattus norvegicus miR-181b-1 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314040; Mir181b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 36..58
FT /accession="MIMAT0000859"
FT /product="rno-miR-181b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0001366"
FT miRNA 76..96
FT /accession="MIMAT0017139"
FT /product="rno-miR-181b-1-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 110 BP; 31 A; 23 C; 27 G; 0 T; 29 other;
ccugugcaga gaugauguuu acaaagguca caaucaacau ucauugcugu cgguggguug 60
aacuguguag aaaagcucac ugaacaauga augcaacugu ggccccgcuu 110
//
ID rno-mir-181b-2 standard; RNA; RNO; 88 BP.
XX
AC MI0000927;
XX
DE Rattus norvegicus miR-181b-2 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314159; Mir181b-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0000859"
FT /product="rno-miR-181b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0001367"
FT miRNA 53..74
FT /accession="MIMAT0017140"
FT /product="rno-miR-181b-2-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 88 BP; 25 A; 20 C; 21 G; 0 T; 22 other;
ugauggcugc acucaacauu cauugcuguc gguggguuug aaugucaacc aacucacugg 60
ucaaugaaug caaacugcgg gccaaaaa 88
//
ID rno-mir-183 standard; RNA; RNO; 110 BP.
XX
AC MI0000928;
XX
DE Rattus norvegicus miR-183 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314041; Mir183.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..48
FT /accession="MIMAT0000860"
FT /product="rno-miR-183-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000273"
FT miRNA 67..87
FT /accession="MIMAT0017141"
FT /product="rno-miR-183-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 110 BP; 31 A; 25 C; 31 G; 0 T; 23 other;
ccagagagug ugacuccugu ccuguguaug gcacugguag aauucacugu gaacagucuc 60
ggucagugaa uuaccgaagg gccauaaaca gagcagagac agauccgcga 110
//
ID rno-mir-185 standard; RNA; RNO; 80 BP.
XX
AC MI0000930;
XX
DE Rattus norvegicus miR-185 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314243; Mir185.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000862"
FT /product="rno-miR-185-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000227"
FT miRNA 58..76
FT /accession="MIMAT0017142"
FT /product="rno-miR-185-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 80 BP; 11 A; 22 C; 27 G; 0 T; 20 other;
gggggugagg gauuggagag aaaggcaguu ccugaugguc cccucccagg ggcuggcuuu 60
ccucuggucc uucucuccca 80
//
ID rno-mir-186 standard; RNA; RNO; 86 BP.
XX
AC MI0000931;
XX
DE Rattus norvegicus miR-186 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314043; Mir186.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000863"
FT /product="rno-miR-186-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000483"
FT miRNA 54..74
FT /accession="MIMAT0017143"
FT /product="rno-miR-186-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 86 BP; 20 A; 15 C; 15 G; 0 T; 36 other;
ugcuuacaac uuuccaaaga auucuccuuu ugggcuuucu cauuuuauuu uaagcccaaa 60
ggugaauuuu uugggaaguu ugagcu 86
//
ID rno-mir-187 standard; RNA; RNO; 104 BP.
XX
AC MI0000932;
XX
DE Rattus norvegicus miR-187 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314044; Mir187.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..46
FT /accession="MIMAT0017144"
FT /product="rno-miR-187-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 66..87
FT /accession="MIMAT0000864"
FT /product="rno-miR-187-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000229"
XX
SQ Sequence 104 BP; 20 A; 33 C; 33 G; 0 T; 18 other;
gggcucacag gacacaaugc ggauccucag gcuacaacac aggacccggg cgcugcucug 60
accccucgug ucuuguguug cagccggagg gacgcagguc ugca 104
//
ID rno-mir-190a-1 standard; RNA; RNO; 85 BP.
XX
AC MI0000933;
XX
DE Rattus norvegicus miR-190-1 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314160; Mir190.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000865"
FT /product="rno-miR-190a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0000232"
FT miRNA 51..72
FT /accession="MIMAT0017145"
FT /product="rno-miR-190a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 85 BP; 21 A; 15 C; 15 G; 0 T; 34 other;
ugcaggccuc ugugugauau guuugauaua uuagguuguu auuuaaucca acuauauauc 60
aagcauauuc cuacaguguc uugcc 85
//
ID rno-mir-191a standard; RNA; RNO; 91 BP.
XX
AC MI0000934;
XX
DE Rattus norvegicus miR-191a stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314045; Mir191.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0000866"
FT /product="rno-miR-191a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1,3], SOLiD [5]"
FT miRNA 57..78
FT /accession="MIMAT0017146"
FT /product="rno-miR-191a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
XX
SQ Sequence 91 BP; 17 A; 29 C; 23 G; 0 T; 22 other;
ggcuggacag cgggcaacgg aaucccaaaa gcagcuguug ucuccagagc auuccagcug 60
cacuuggauu ucguucccug cucuccugcc u 91
//
ID rno-mir-192 standard; RNA; RNO; 110 BP.
XX
AC MI0000935;
XX
DE Rattus norvegicus miR-192 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314193; Mir192.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0000867"
FT /product="rno-miR-192-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000234"
FT miRNA 67..88
FT /accession="MIMAT0017147"
FT /product="rno-miR-192-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 110 BP; 24 A; 31 C; 28 G; 0 T; 27 other;
gucaagaugg agugcacagg gcucugaccu augaauugac agccaguacu cugaucucgc 60
cucuggcugc caguuccaua ggucacaggu auguucgccu caaugccagc 110
//
ID rno-mir-193a standard; RNA; RNO; 86 BP.
XX
AC MI0000936;
XX
DE Rattus norvegicus miR-193 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314244; Mir193.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0004736"
FT /product="rno-miR-193a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT miRNA 54..75
FT /accession="MIMAT0000868"
FT /product="rno-miR-193a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000235"
XX
SQ Sequence 86 BP; 16 A; 23 C; 30 G; 0 T; 17 other;
gcggacggga gcugagagcu gggucuuugc gggcaagaug agggugucag uucaacuggc 60
cuacaaaguc ccaguccucg gcuccc 86
//
ID rno-mir-194-1 standard; RNA; RNO; 83 BP.
XX
AC MI0000937;
XX
DE Rattus norvegicus miR-194-1 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314046; Mir194-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000869"
FT /product="rno-miR-194-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000488"
XX
SQ Sequence 83 BP; 19 A; 21 C; 21 G; 0 T; 22 other;
auggagucau cacguguaac agcaacucca uguggacugu gcacagaucc caguggagcu 60
gcuguuacuu uugauggccu cca 83
//
ID rno-mir-194-2 standard; RNA; RNO; 85 BP.
XX
AC MI0000938;
XX
DE Rattus norvegicus miR-194-2 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314047; Mir194-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000869"
FT /product="rno-miR-194-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000733"
FT miRNA 51..71
FT /accession="MIMAT0017148"
FT /product="rno-miR-194-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 85 BP; 14 A; 24 C; 27 G; 0 T; 20 other;
uggcucccac ccccuguaac agcaacucca uguggaagug cccacugauu ccaguggggc 60
ugcuguuauc ugggguggag gcugg 85
//
ID rno-mir-195 standard; RNA; RNO; 87 BP.
XX
AC MI0000939;
XX
DE Rattus norvegicus miR-195 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314281; Mir195.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0000870"
FT /product="rno-miR-195-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000237"
FT miRNA 53..75
FT /accession="MIMAT0017149"
FT /product="rno-miR-195-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 87 BP; 19 A; 20 C; 27 G; 0 T; 21 other;
aacucuccug gcucuagcag cacagaaaua uuggcacggg uaagugaguc ugccaauauu 60
ggcugugcug cuccaggcag gguggug 87
//
ID rno-mir-196a standard; RNA; RNO; 110 BP.
XX
AC MI0000940;
XX
DE Rattus norvegicus miR-196a stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 15105502.
RA Yekta S, Shih IH, Bartel DP;
RT "MicroRNA-directed cleavage of HOXB8 mRNA";
RL Science. 304:594-596(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314048; Mir196a.
XX
CC Yekta et al. report that miR-196 miRNAs are expressed from HOX gene
CC clusters in mammals, and that HOX genes in these clusters are targets of
CC miR-196. Indeed, HOXB8 mRNA was shown to be a natural target for
CC miR-196-directed cleavage through a perfectly complementary miR-target
CC site. Other HOX genes have imperfect miR-196 complementary sites
CC indicative of regulation by translational repression [2]. The mature
CC sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [3]. The ends of the miRNA may be offset with
CC respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0000871"
FT /product="rno-miR-196a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], SOLiD [4]"
FT /similarity="MI0000279"
FT miRNA 61..82
FT /accession="MIMAT0004737"
FT /product="rno-miR-196a-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
XX
SQ Sequence 110 BP; 21 A; 19 C; 32 G; 0 T; 38 other;
uguuugcuca gcugaucugu ggcuuaggua guuucauguu guugggauug aguuuugaac 60
ucggcaacaa gaaacugccu gaguuacauc agucgguuuu cgucgagggc 110
//
ID rno-mir-199a standard; RNA; RNO; 110 BP.
XX
AC MI0000941;
XX
DE Rattus norvegicus miR-199a stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314245; Mir199a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..53
FT /accession="MIMAT0000872"
FT /product="rno-miR-199a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [3]"
FT /similarity="MI0000281"
FT miRNA 70..91
FT /accession="MIMAT0004738"
FT /product="rno-miR-199a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
XX
SQ Sequence 110 BP; 23 A; 29 C; 31 G; 0 T; 27 other;
uggaagcuuc uggagauccu gcuccgucgc cccaguguuc agacuaccug uucaggacaa 60
ugccguugua caguagucug cacauugguu agacugggca agggccagca 110
//
ID rno-mir-200c standard; RNA; RNO; 69 BP.
XX
AC MI0000942;
XX
DE Rattus norvegicus miR-200c stem-loop
XX
RN [1]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314049; Mir200c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..25
FT /accession="MIMAT0017150"
FT /product="rno-miR-200c-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 45..65
FT /accession="MIMAT0000873"
FT /product="rno-miR-200c-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0000650"
XX
SQ Sequence 69 BP; 11 A; 15 C; 23 G; 0 T; 20 other;
cccucgucuu acccagcagu guuugggugc ugguugggag ucucuaauac ugccggguaa 60
ugauggagg 69
//
ID rno-mir-200a standard; RNA; RNO; 89 BP.
XX
AC MI0000943;
XX
DE Rattus norvegicus miR-200a stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314194; Mir200a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0017151"
FT /product="rno-miR-200a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 54..75
FT /accession="MIMAT0000874"
FT /product="rno-miR-200a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000554"
XX
SQ Sequence 89 BP; 17 A; 22 C; 24 G; 0 T; 26 other;
cugggccucu gugggcaucu uaccggacag ugcuggauuu cuuggcuuga cucuaacacu 60
gucugguaac gauguucaaa ggugaccca 89
//
ID rno-mir-200b standard; RNA; RNO; 95 BP.
XX
AC MI0000944;
XX
DE Rattus norvegicus miR-200b stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314050; Mir200b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0017152"
FT /product="rno-miR-200b-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 57..79
FT /accession="MIMAT0000875"
FT /product="rno-miR-200b-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000342"
XX
SQ Sequence 95 BP; 19 A; 25 C; 28 G; 0 T; 23 other;
ccaacuuggg cagccguggc caucuuacug ggcagcauug gauagugucu gaucucuaau 60
acugccuggu aaugaugacg gcggagcccu gcacg 95
//
ID rno-mir-203a standard; RNA; RNO; 97 BP.
XX
AC MI0000945;
XX
DE Rattus norvegicus miR-203a stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314161; Mir203.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0017153"
FT /product="rno-miR-203a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 52..73
FT /accession="MIMAT0000876"
FT /product="rno-miR-203a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000246"
XX
SQ Sequence 97 BP; 21 A; 26 C; 29 G; 0 T; 21 other;
gcgcgccugg uccagugguu cuuaacaguu caacaguucu guagcgcaau ugugaaaugu 60
uuaggaccac uagacccggc gcgcacggca gcggcga 97
//
ID rno-mir-204 standard; RNA; RNO; 110 BP.
XX
AC MI0000946;
XX
DE Rattus norvegicus miR-204 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314051; Mir204.
XX
FH Key Location/Qualifiers
FH
FT miRNA 33..54
FT /accession="MIMAT0000877"
FT /product="rno-miR-204-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000247"
FT miRNA 72..93
FT /accession="MIMAT0004739"
FT /product="rno-miR-204-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 110 BP; 25 A; 26 C; 29 G; 0 T; 30 other;
ggcuacagcc cuucuucaug ugacucgugg acuucccuuu gucauccuau gccugagaau 60
auaugaagga ggcugggaag gcaaagggac guucaauugu caucacuggc 110
//
ID rno-mir-205 standard; RNA; RNO; 108 BP.
XX
AC MI0000947;
XX
DE Rattus norvegicus miR-205 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314246; Mir205.
XX
FH Key Location/Qualifiers
FH
FT miRNA 33..55
FT /accession="MIMAT0000878"
FT /product="rno-miR-205"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0000248"
XX
SQ Sequence 108 BP; 26 A; 32 C; 26 G; 0 T; 24 other;
aaacagcccc agacaaucca uggguccucc uguccuucau uccaccggag ucugucuuau 60
gccaaccaga uuucagugga gugaagcuca ggaggcaugg agcugcca 108
//
ID rno-mir-206 standard; RNA; RNO; 84 BP.
XX
AC MI0000948;
XX
DE Rattus norvegicus miR-206 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314052; Mir206.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0017154"
FT /product="rno-miR-206-5p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
FT miRNA 51..72
FT /accession="MIMAT0000879"
FT /product="rno-miR-206-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000249"
XX
SQ Sequence 84 BP; 19 A; 18 C; 20 G; 0 T; 27 other;
cuuccccagg ccacaugcuu cuuuauaucc ucauagauau cacugcgcua uggaauguaa 60
ggaagugugu gguuuuggca agug 84
//
ID rno-mir-208a standard; RNA; RNO; 83 BP.
XX
AC MI0000949;
XX
DE Rattus norvegicus miR-208 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314162; Mir208.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0017155"
FT /product="rno-miR-208a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 50..67
FT /accession="MIMAT0000880"
FT /product="rno-miR-208a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0000555"
XX
SQ Sequence 83 BP; 19 A; 17 C; 24 G; 0 T; 23 other;
uuccuuugac gggugagcuu uuggcccggg uuauaccuga cucucacgua uaagacgagc 60
aaaaagcuug uuggucagag gag 83
//
ID rno-mir-210 standard; RNA; RNO; 110 BP.
XX
AC MI0000950;
XX
DE Rattus norvegicus miR-210 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314053; Mir210.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..49
FT /accession="MIMAT0017156"
FT /product="rno-miR-210-5p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
FT miRNA 66..87
FT /accession="MIMAT0000881"
FT /product="rno-miR-210-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0001379"
XX
SQ Sequence 110 BP; 18 A; 42 C; 33 G; 0 T; 17 other;
ccggggcagu cccuccaggc ucaggacagc cacugcccac agcacacugc guugcuccgg 60
acccacugug cgugugacag cggcugaucu gucccugggc agcgcgaacc 110
//
ID rno-mir-212 standard; RNA; RNO; 111 BP.
XX
AC MI0000952;
XX
DE Rattus norvegicus miR-212 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314247; Mir212.
XX
FH Key Location/Qualifiers
FH
FT miRNA 32..55
FT /accession="MIMAT0017158"
FT /product="rno-miR-212-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 72..93
FT /accession="MIMAT0000883"
FT /product="rno-miR-212-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0003385"
XX
SQ Sequence 111 BP; 15 A; 49 C; 31 G; 0 T; 16 other;
cgggauaucc ccgcccgggc agcgcgccgg caccuuggcu cuagacugcu uacugcccgg 60
gccgcccuca guaacagucu ccagucacgg ccaccgacgc cuggccccgc c 111
//
ID rno-mir-181a-1 standard; RNA; RNO; 100 BP.
XX
AC MI0000953;
XX
DE Rattus norvegicus miR-181a-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314195; Mir181a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0000858"
FT /product="rno-miR-181a-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4], SOLiD [4]"
FT /similarity="MI0000289"
FT miRNA 55..76
FT /accession="MIMAT0000884"
FT /product="rno-miR-181a-1-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [4]"
FT /similarity="MI0001380"
XX
SQ Sequence 100 BP; 29 A; 23 C; 18 G; 0 T; 30 other;
agguugcuuc agugaacauu caacgcuguc ggugaguuug gaauucaaau aaaaaccauc 60
gaccguugau uguacccuau agcuaaccau uaucuacucc 100
//
ID rno-mir-214 standard; RNA; RNO; 110 BP.
XX
AC MI0000954;
XX
DE Rattus norvegicus miR-214 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314055; Mir214.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..30
FT /accession="MIMAT0017159"
FT /product="rno-miR-214-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 71..91
FT /accession="MIMAT0000885"
FT /product="rno-miR-214-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0001381"
XX
SQ Sequence 110 BP; 26 A; 33 C; 27 G; 0 T; 24 other;
guccuggaug gacagaguug ucaugugucu gccugucuac acuugcugug cagaacaucc 60
gcucaccugu acagcaggca cagacaggca gucacaugac aacccagccu 110
//
ID rno-mir-216a standard; RNA; RNO; 106 BP.
XX
AC MI0000955;
XX
DE Rattus norvegicus miR-216a stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314216; Mir216a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0000886"
FT /product="rno-miR-216a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0001382"
FT miRNA 59..80
FT /accession="MIMAT0017160"
FT /product="rno-miR-216a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 106 BP; 25 A; 24 C; 22 G; 0 T; 35 other;
guuagcuaug aguuaguuua aucucagcug gcaacuguga gaugucccua ucauuccuca 60
caguggucuc ugggauuaug cuaaacagag caauuuccuu gaccuc 106
//
ID rno-mir-217 standard; RNA; RNO; 105 BP.
XX
AC MI0000956;
XX
DE Rattus norvegicus miR-217 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314056; Mir217.
XX
FH Key Location/Qualifiers
FH
FT miRNA 32..53
FT /accession="MIMAT0000887"
FT /product="rno-miR-217-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0001383"
FT miRNA 70..91
FT /accession="MIMAT0017161"
FT /product="rno-miR-217-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 105 BP; 31 A; 26 C; 19 G; 0 T; 29 other;
accacaguca uuguaguuuu gaugucgcag auacugcauc aggaacugac uggauaagac 60
ucagucacca ucaguuccua augcauugcc uucagcaucu aaaca 105
//
ID rno-mir-218a-2 standard; RNA; RNO; 110 BP.
XX
AC MI0000957;
XX
DE Rattus norvegicus miR-218a-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314057; Mir218-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0000888"
FT /product="rno-miR-218a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1-2], SOLiD [4]"
FT miRNA 67..88
FT /accession="MIMAT0004740"
FT /product="rno-miR-218a-2-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
XX
SQ Sequence 110 BP; 23 A; 29 C; 31 G; 0 T; 27 other;
gaccaguugc cgcggggcuu uccuuugugc uugaucuaac cauguggugg aacgauggaa 60
acggaacaug guucugucaa gcaccgcgga aagcaucgcu cucuccugca 110
//
ID rno-mir-218a-1 standard; RNA; RNO; 110 BP.
XX
AC MI0000958;
XX
DE Rattus norvegicus miR-218a-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314248; Mir218-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0000888"
FT /product="rno-miR-218a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1-2], SOLiD [4]"
FT miRNA 64..84
FT /accession="MIMAT0017162"
FT /product="rno-miR-218a-1-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 110 BP; 28 A; 23 C; 27 G; 0 T; 32 other;
gugauaacgu agcgagauuu ucuguugugc uugaucuaac caugugcuug cgagguauga 60
guaaaacaug guuccgucaa gcaccaugga acgucacgca gcuuucuaca 110
//
ID rno-mir-219a-1 standard; RNA; RNO; 110 BP.
XX
AC MI0000959;
XX
DE Rattus norvegicus miR-219a-1 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314058; Mir219-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0000889"
FT /product="rno-miR-219a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0001384"
FT miRNA 62..83
FT /accession="MIMAT0004741"
FT /product="rno-miR-219a-1-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 110 BP; 15 A; 41 C; 34 G; 0 T; 20 other;
cugucccggg ccgcggcucc ugauugucca aacgcaauuc ucgagucucu ggcuccggcc 60
gagaguugcg ucuggacguc ccgagccgcc gcccccaaac cucgaggggg 110
//
ID rno-mir-219a-2 standard; RNA; RNO; 96 BP.
XX
AC MI0000960;
XX
DE Rattus norvegicus miR-219a-2 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314293; Mir219-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0000889"
FT /product="rno-miR-219a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0001385"
FT miRNA 62..83
FT /accession="MIMAT0005446"
FT /product="rno-miR-219a-2-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 96 BP; 20 A; 25 C; 27 G; 0 T; 24 other;
acucaggggc uucaccacug auuguccaaa cgcaauucuu guacgagucu gcggccaacc 60
gagaauugug gcuggacauc ugugguugag cuccgg 96
//
ID rno-mir-221 standard; RNA; RNO; 109 BP.
XX
AC MI0000961;
XX
DE Rattus norvegicus miR-221 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314163; Mir221.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..47
FT /accession="MIMAT0017163"
FT /product="rno-miR-221-5p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
FT miRNA 65..87
FT /accession="MIMAT0000890"
FT /product="rno-miR-221-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], SOLiD [4]"
XX
SQ Sequence 109 BP; 24 A; 22 C; 28 G; 0 T; 35 other;
ugaauaucca ggucuggggc augaaccugg cauacaaugu agauuucugu guuuguuagg 60
caacagcuac auugucugcu ggguuucagg cuaccuggaa gcauuucuc 109
//
ID rno-mir-222 standard; RNA; RNO; 103 BP.
XX
AC MI0000962;
XX
DE Rattus norvegicus miR-222 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314059; Mir222.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..42
FT /accession="MIMAT0017164"
FT /product="rno-miR-222-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 62..82
FT /accession="MIMAT0000891"
FT /product="rno-miR-222-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000299"
XX
SQ Sequence 103 BP; 21 A; 24 C; 28 G; 0 T; 30 other;
aaggauuagg gugcccucag uggcucagua gccaguguag auccugucuu ugguaaucag 60
cagcuacauc uggcuacugg gucucugaug gcaucaucua gcu 103
//
ID rno-mir-223 standard; RNA; RNO; 110 BP.
XX
AC MI0000963;
XX
DE Rattus norvegicus miR-223 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314060; Mir223.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..48
FT /accession="MIMAT0017165"
FT /product="rno-miR-223-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 68..88
FT /accession="MIMAT0000892"
FT /product="rno-miR-223-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0001389"
XX
SQ Sequence 110 BP; 21 A; 24 C; 29 G; 0 T; 36 other;
ucuggccuuc ugcaguguua cgcuccgugu auuugacaag cugaguugga cacucugugu 60
gguagagugu caguuuguca aauaccccaa guguggcuca ugcuuaucag 110
//
ID rno-mir-291a standard; RNA; RNO; 82 BP.
XX
AC MI0000965;
XX
DE Rattus norvegicus miR-291a stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
DR ENTREZGENE; 100314061; Mir291a.
XX
CC This sequence is the predicted rat homologue of a confirmed miRNA from
CC mouse [1]. Its expression has not been experimentally verified in rat.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000894"
FT /product="rno-miR-291a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000389"
FT miRNA 50..72
FT /accession="MIMAT0000895"
FT /product="rno-miR-291a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000389"
XX
SQ Sequence 82 BP; 15 A; 22 C; 25 G; 0 T; 20 other;
ccgguguagu agccaucaaa guggaggccc ucucuugggc ccgagcuaga aagugcuucc 60
acuuugugug ccacugcaug gg 82
//
ID rno-mir-292 standard; RNA; RNO; 82 BP.
XX
AC MI0000966;
XX
DE Rattus norvegicus miR-292 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314062; Mir292.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0000896"
FT /product="rno-miR-292-5p"
FT /evidence=not_experimental
FT /similarity="MI0000390"
FT miRNA 51..73
FT /accession="MIMAT0000897"
FT /product="rno-miR-292-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0000390"
XX
SQ Sequence 82 BP; 17 A; 15 C; 23 G; 0 T; 27 other;
caaccuguga uacucaaacu gggggcucuu uuggguuuuc uuuggaagaa aagugccgcc 60
agguuuugag uguuaccgau ug 82
//
ID rno-mir-296 standard; RNA; RNO; 78 BP.
XX
AC MI0000967;
XX
DE Rattus norvegicus miR-296 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314282; Mir296.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0000898"
FT /product="rno-miR-296-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0000394"
FT miRNA 47..68
FT /accession="MIMAT0004742"
FT /product="rno-miR-296-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 78 BP; 9 A; 22 C; 26 G; 0 T; 21 other;
ggaccuuucu ggagggcccc cccucaaucc uguugugcuc gcuucagagg guugggugga 60
ggcucuccug aagguguc 78
//
ID rno-mir-298 standard; RNA; RNO; 82 BP.
XX
AC MI0000969;
XX
DE Rattus norvegicus miR-298 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314250; Mir298.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0000900"
FT /product="rno-miR-298-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000398"
FT miRNA 52..73
FT /accession="MIMAT0017166"
FT /product="rno-miR-298-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 82 BP; 12 A; 19 C; 27 G; 0 T; 24 other;
ccaggccuuc ggcagaggag ggcuguucuu cccuuggguu uuaugacugg gaggaacuag 60
ccuucucucu gcuuaggagu gg 82
//
ID rno-mir-299a standard; RNA; RNO; 63 BP.
XX
AC MI0000970;
XX
DE Rattus norvegicus miR-299 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314064; Mir299.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000901"
FT /product="rno-miR-299a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0000399"
FT miRNA 39..59
FT /accession="MIMAT0017167"
FT /product="rno-miR-299a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 63 BP; 17 A; 12 C; 14 G; 0 T; 20 other;
aagaaauggu uuaccguccc acauacauuu ugaguaugua ugugggacgg uaaaccgcuu 60
cuu 63
//
ID mmu-mir-215 standard; RNA; MMU; 112 BP.
XX
AC MI0000974;
XX
DE Mus musculus miR-215 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676891; Mir215.
DR ENTREZGENE; 387211; Mir215.
XX
CC This mouse miRNA was predicted by computational methods using conservation
CC with human and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the 5' end mapped by PCR. The 3' end
CC was not experimentally determined. The mature sequence differs from the
CC human miR-215 at A12->U, and its expression has not been verified in
CC mouse.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..50
FT /accession="MIMAT0000904"
FT /product="mmu-miR-215-5p"
FT /evidence=experimental
FT /experiment="Illumina [2-3]"
FT miRNA 67..87
FT /accession="MIMAT0017169"
FT /product="mmu-miR-215-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 112 BP; 29 A; 24 C; 25 G; 0 T; 34 other;
agcucucagc aucaacggug uacaggagaa ugaccuauga uuugacagac cgugcagcug 60
uguaugucug ucauucugua ggccaauauu cuguauguca cugcuacuua aa 112
//
ID osa-MIR396c standard; RNA; OSA; 141 BP.
XX
AC MI0001048;
XX
DE Oryza sativa miR396c stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence belongs to the miR396 family of miRNAs, which are predicted
CC to target mRNAs coding for Growth Regulating Factor (GRF) transcription
CC factors, rhodenase-like proteins, and kinesin-like protein B [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0000979"
FT /product="osa-miR396c-5p"
FT /evidence=not_experimental
FT /similarity="MI0001014"
FT miRNA 113..133
FT /accession="MIMAT0022865"
FT /product="osa-miR396c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 141 BP; 39 A; 28 C; 37 G; 0 T; 37 other;
ugccaugccu uuccacagcu uucuugaacu ucucuugugc cucacucacu uucauuacug 60
gagagauaug caucaucagu ggaagcuuau agggagagga gugcaagaag agggucaaga 120
aagcuguggg aagaaauggc a 141
//
ID osa-MIR156l standard; RNA; OSA; 156 BP.
XX
AC MI0001091;
XX
DE Oryza sativa miR156l stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence is a predicted paralogue of the previously identified miR156
CC family [1]. It is predicted to target mRNAs coding for Squamosa-promoter
CC Binding Protein (SBP)-like transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001021"
FT /product="osa-miR156l-5p"
FT /evidence=not_experimental
FT /similarity="MI0000178"
FT miRNA 127..148
FT /accession="MIMAT0022866"
FT /product="osa-miR156l-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 156 BP; 44 A; 24 C; 38 G; 0 T; 50 other;
gcuagggagc cgacagaaga gagugagcau auauaguucu uuccuugcau auguggucau 60
auguguguug acugaagaga uacauauaua uagagagaga gaguucaugu gcuugaagcu 120
auaugugcuc acuucucuuu cugucagcaa auuauc 156
//
ID osa-MIR166k standard; RNA; OSA; 127 BP.
XX
AC MI0001107;
XX
DE Oryza sativa miR166k stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence is a predicted paralogue of the previously identified miR166
CC family [1]. It is predicted to target mRNAs coding for HD-Zip
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0022870"
FT /product="osa-miR166k-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 97..117
FT /accession="MIMAT0001037"
FT /product="osa-miR166k-3p"
FT /evidence=not_experimental
FT /similarity="MI0000201"
XX
SQ Sequence 127 BP; 20 A; 36 C; 35 G; 0 T; 36 other;
auuagguuaa gggguuuguu gucuggcucg aggcauccgg gacuccgguu ucuccuuucc 60
uacuggaggc gccuaauuuc cggcgagcuc ggagccucgg accaggcuuc aaucccuuua 120
accaugc 127
//
ID osa-MIR166l standard; RNA; OSA; 117 BP.
XX
AC MI0001108;
XX
DE Oryza sativa miR166l stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence is a predicted paralogue of the previously identified miR166
CC family [1]. It is predicted to target mRNAs coding for HD-Zip
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0022871"
FT /product="osa-miR166l-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 87..107
FT /accession="MIMAT0001038"
FT /product="osa-miR166l-3p"
FT /evidence=not_experimental
FT /similarity="MI0000204"
XX
SQ Sequence 117 BP; 27 A; 24 C; 31 G; 0 T; 35 other;
guuagguuaa ggggauuguu gucugguuca aggucuccac auugugcaaa auguucauuc 60
auggaggcac aggaugcuug gugaucucgg accaggcuuc aaucccuuua accagca 117
//
ID osa-MIR167e standard; RNA; OSA; 273 BP.
XX
AC MI0001110;
XX
DE Oryza sativa miR167e stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence is a predicted paralogue of the previously identified miR167
CC family [1]. It is predicted to target mRNAs coding for Auxin Response
CC Factors (ARF transcription factors).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001040"
FT /product="osa-miR167e-5p"
FT /evidence=not_experimental
FT /similarity="MI0000208"
FT miRNA 245..265
FT /accession="MIMAT0022873"
FT /product="osa-miR167e-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 273 BP; 60 A; 42 C; 83 G; 0 T; 88 other;
ugugagagaa ugaagcugcc agcaugaucu gguugucagg caugagccaa aucuauccau 60
gguguuggug guacugaaau uaccgcguuu ucgagguuuu ucgucguguc aacuugcgaa 120
gggaauuacg gguucuugau gagcauuggu gauaggaggu gugggcuugg uuaguagagg 180
uagaauuaug auuguucuug ugaguuucag uaagaggugg gagugauugg aauuuggcuc 240
caucagauca uguugcagcu ucacucucuc acc 273
//
ID osa-MIR167g standard; RNA; OSA; 82 BP.
XX
AC MI0001112;
XX
DE Oryza sativa miR167g stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR167
CC family [1]. It is predicted to target mRNAs coding for Auxin Response
CC Factors (ARF transcription factors).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001042"
FT /product="osa-miR167g"
FT /evidence=not_experimental
FT /similarity="MI0000208"
XX
SQ Sequence 82 BP; 24 A; 23 C; 17 G; 0 T; 18 other;
cauaagcagg ugaagcugcc agcaugaucu gaaagcaucu caaaccagcg aucagaucau 60
ccggcagcuu caucuucuca ug 82
//
ID osa-MIR167i standard; RNA; OSA; 201 BP.
XX
AC MI0001114;
XX
DE Oryza sativa miR167i stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence is a predicted paralogue of the previously identified miR167
CC family [1]. It is predicted to target mRNAs coding for Auxin Response
CC Factors (ARF transcription factors).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001044"
FT /product="osa-miR167i-5p"
FT /evidence=not_experimental
FT /similarity="MI0000208"
FT miRNA 173..193
FT /accession="MIMAT0022875"
FT /product="osa-miR167i-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 201 BP; 43 A; 43 C; 47 G; 0 T; 68 other;
ugugagaggc ugaagcugcc agcaugaucu gguccaugag uugcacugcu gaauauauug 60
aauucagcca ggagcugcua cugcaguucu gaucucgauc ugcauucguu guucugagcu 120
auguauggau uugaucgguu ugaaggcauc caugucuuua auuucaucga ucagaucaug 180
uugcagcuuc acucucucac u 201
//
ID osa-MIR168a standard; RNA; OSA; 87 BP.
XX
AC MI0001115;
XX
DE Oryza sativa miR168a stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 19903869.
RA Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
RT "Rice MicroRNA effector complexes and targets";
RL Plant Cell. 21:3421-3435(2009).
XX
CC This sequence is a predicted paralogue of the previously identified miR168
CC family [1]. It is predicted to target mRNAs coding for the ARGONAUTE
CC protein.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001045"
FT /product="osa-miR168a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000210"
FT miRNA 56..79
FT /accession="MIMAT0015122"
FT /product="osa-miR168a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 87 BP; 10 A; 34 C; 31 G; 0 T; 12 other;
cgccucgggc ucgcuuggug cagaucggga cccgccgccg ccgcugccgg ggccggaucc 60
cgccuugcac caagugaauc ggagccg 87
//
ID osa-MIR169i standard; RNA; OSA; 176 BP.
XX
AC MI0001124;
XX
DE Oryza sativa miR169i stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21679406.
RA Wei LQ, Yan LF, Wang T;
RT "Deep sequencing on genome-wide scale reveals the unique composition and
RT expression patterns of microRNAs in developing pollen of Oryza sativa";
RL Genome Biol. 12:R53(2011).
XX
RN [3]
RX PUBMED; 22585409.
RA Liu Q;
RT "Novel miRNAs in the control of arsenite levels in rice";
RL Funct Integr Genomics. 12:649-658(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0020917"
FT /product="osa-miR169i-5p.2"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 44..64
FT /accession="MIMAT0001054"
FT /product="osa-miR169i-5p.1"
FT /evidence=not_experimental
FT /similarity="MI0000212"
FT miRNA 135..156
FT /accession="MIMAT0022876"
FT /product="osa-miR169i-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 176 BP; 39 A; 34 C; 51 G; 0 T; 52 other;
ggaagagagc aaggcuugca uggugauaag gguguagcuc ugguagccaa ggaugacuug 60
ccuguguccu uguguagagg aucauucaga aaaugagccu ugaacugguu cauaggcagu 120
cuccuuggcu agucugaguc gcucuuauca cucauguuag gcuugcaucu cguuga 176
//
ID osa-MIR171c standard; RNA; OSA; 99 BP.
XX
AC MI0001134;
XX
DE Oryza sativa miR171c stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence is a predicted paralogue of the previously identified miR171
CC family [1]. It is predicted to target mRNAs coding for SCARECROW-like
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0022877"
FT /product="osa-miR171c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 69..89
FT /accession="MIMAT0001064"
FT /product="osa-miR171c-3p"
FT /evidence=not_experimental
FT /similarity="MI0000214"
XX
SQ Sequence 99 BP; 20 A; 23 C; 31 G; 0 T; 25 other;
gugggaacgg gauauuggug cgguucaauc agaaagcuug ugcuccgaag gcgaggggcu 60
ccacucuuug auugagccgu gccaauauca cgucgccuu 99
//
ID osa-MIR171d standard; RNA; OSA; 135 BP.
XX
AC MI0001135;
XX
DE Oryza sativa miR171d stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence is a predicted paralogue of the previously identified miR171
CC family [1]. It is predicted to target mRNAs coding for SCARECROW-like
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0022878"
FT /product="osa-miR171d-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 105..125
FT /accession="MIMAT0001065"
FT /product="osa-miR171d-3p"
FT /evidence=not_experimental
FT /similarity="MI0000214"
XX
SQ Sequence 135 BP; 31 A; 31 C; 35 G; 0 T; 38 other;
uuguagcuau gauguuggcc cggcucacuc agauggauca ucggugcaga agagugcaug 60
aaucugaugc agucucagug uaguaugcuc caugcuggaa cuucugauug agccgugcca 120
auaucucagc accau 135
//
ID osa-MIR171e standard; RNA; OSA; 119 BP.
XX
AC MI0001136;
XX
DE Oryza sativa miR171e stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence is a predicted paralogue of the previously identified miR171
CC family [1]. It is predicted to target mRNAs coding for SCARECROW-like
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0022879"
FT /product="osa-miR171e-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 89..109
FT /accession="MIMAT0001066"
FT /product="osa-miR171e-3p"
FT /evidence=not_experimental
FT /similarity="MI0000214"
XX
SQ Sequence 119 BP; 21 A; 27 C; 33 G; 0 T; 38 other;
ugguagcuau gauguuggcu cggcucacuc agacggcauu ggcgugaugc aaagcaugca 60
ugcgugcuug cuagcucacu uguguuucug auugagccgu gccaauaucu uagugcucu 119
//
ID osa-MIR166h standard; RNA; OSA; 119 BP.
XX
AC MI0001143;
XX
DE Oryza sativa miR166h stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence is a predicted paralogue of the previously identified miR166
CC family [1]. It is predicted to target mRNAs coding for HD-Zip
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0022882"
FT /product="osa-miR166h-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 89..109
FT /accession="MIMAT0001073"
FT /product="osa-miR166h-3p"
FT /evidence=not_experimental
FT /similarity="MI0000201"
XX
SQ Sequence 119 BP; 18 A; 32 C; 40 G; 0 T; 29 other;
gguggcuugu ggggaauguu ggcuggcucg agguauccac aucuuaauuc cucuccggcg 60
aucgagccgg cucgggcgug uggaagcguc ggaccaggcu ucauuccucg caagccgau 119
//
ID mmu-mir-384 standard; RNA; MMU; 88 BP.
XX
AC MI0001146;
XX
DE Mus musculus miR-384 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619394; Mir384.
DR ENTREZGENE; 723861; Mir384.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0004745"
FT /product="mmu-miR-384-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 57..78
FT /accession="MIMAT0001076"
FT /product="mmu-miR-384-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 88 BP; 30 A; 13 C; 16 G; 0 T; 29 other;
uguuaaauca ggaauuguaa acaauuccua ggcaaugugu auaauguugg uaagucauuc 60
cuagaaauug uucacaaugc cuguaaca 88
//
ID osa-MIR393b standard; RNA; OSA; 132 BP.
XX
AC MI0001148;
XX
DE Oryza sativa miR393b stem-loop
XX
RN [1]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
RN [2]
RX PUBMED; 19903869.
RA Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
RT "Rice MicroRNA effector complexes and targets";
RL Plant Cell. 21:3421-3435(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..48
FT /accession="MIMAT0001078"
FT /product="osa-miR393b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001004"
FT miRNA 103..123
FT /accession="MIMAT0015123"
FT /product="osa-miR393b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 132 BP; 29 A; 34 C; 34 G; 0 T; 35 other;
ucggccugag gaaacuagug gaggacucca aagggaucgc auugaucugg cuagcuaucu 60
cgaucgaucg ccucaucgau cgacgacgac gugcgugauc gaucagugca aucccuuugg 120
aauuuuccuc uu 132
//
ID osa-MIR408 standard; RNA; OSA; 213 BP.
XX
AC MI0001149;
XX
DE Oryza sativa miR408 stem-loop
XX
RN [1]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..51
FT /accession="MIMAT0022884"
FT /product="osa-miR408-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 153..173
FT /accession="MIMAT0001079"
FT /product="osa-miR408-3p"
FT /evidence=not_experimental
FT /similarity="MI0001080"
XX
SQ Sequence 213 BP; 40 A; 50 C; 62 G; 0 T; 61 other;
gggaguucug ugauuggaga ggagaggaga cagggaugag gcagagcaug ggauggggcu 60
aucaacagau guagauuauu ccuugcacaa gagaugauga ugagcuguga augaguucug 120
agagauggcu gguguuguug uugcucccuc cccugcacug ccucuucccu ggcuccccug 180
cacaccucuc ucucucucuc ucucucucug ugu 213
//
ID hsa-mir-196b standard; RNA; HSA; 84 BP.
XX
AC MI0001150;
XX
DE Homo sapiens miR-196b stem-loop
XX
RN [1]
RX PUBMED; 15105502.
RA Yekta S, Shih IH, Bartel DP;
RT "MicroRNA-directed cleavage of HOXB8 mRNA";
RL Science. 304:594-596(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [4]
RX PUBMED; 19144710.
RA Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G;
RT "Identification of novel Epstein-Barr virus microRNA genes from
RT nasopharyngeal carcinomas";
RL J Virol. 83:3333-3341(2009).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-196b; hsa-miR-196b.
DR HGNC; 31790; MIR196B.
DR ENTREZGENE; 442920; MIR196B.
XX
CC miR-196b is predicted based on sequence homology to miR-196a [1]. Yekta
CC et al. report that miR-196 miRNAs are expressed from HOX gene clusters in
CC mammals, and that HOX genes in these clusters are targets of miR-196.
CC Indeed, HOXB8 mRNA was shown to be a natural target for miR-196-directed
CC cleavage through a perfectly complementary miR-target site. Other HOX
CC genes have imperfect miR-196 complementary sites indicative of regulation
CC by translational repression [1]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0001080"
FT /product="hsa-miR-196b-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000238"
FT miRNA 50..71
FT /accession="MIMAT0009201"
FT /product="hsa-miR-196b-3p"
FT /evidence=experimental
FT /experiment="454 [4]"
XX
SQ Sequence 84 BP; 14 A; 21 C; 19 G; 0 T; 30 other;
acuggucggu gauuuaggua guuuccuguu guugggaucc accuuucucu cgacagcacg 60
acacugccuu cauuacuuca guug 84
//
ID mmu-mir-196b standard; RNA; MMU; 85 BP.
XX
AC MI0001151;
XX
DE Mus musculus miR-196b stem-loop
XX
RN [1]
RX PUBMED; 15105502.
RA Yekta S, Shih IH, Bartel DP;
RT "MicroRNA-directed cleavage of HOXB8 mRNA";
RL Science. 304:594-596(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618741; Mir196b.
DR ENTREZGENE; 723820; Mir196b.
XX
CC miR-196b is predicted based on sequence homology to miR-196a [1]. Yekta
CC et al. report that miR-196 miRNAs are expressed from HOX gene clusters in
CC mammals, and that HOX genes in these clusters are targets of miR-196.
CC Indeed, HOXB8 mRNA was shown to be a natural target for miR-196-directed
CC cleavage through a perfectly complementary miR-target site. Other HOX
CC genes have imperfect miR-196 complementary sites indicative of regulation
CC by translational repression [1]. Landgraf et al. confirm expression of
CC miR-196b in mouse by cloning [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001081"
FT /product="mmu-miR-196b-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3,5]"
FT /similarity="MI0000238"
FT miRNA 51..72
FT /accession="MIMAT0017170"
FT /product="mmu-miR-196b-3p"
FT /evidence=experimental
FT /experiment="454 [4], Illumina [5]"
XX
SQ Sequence 85 BP; 15 A; 21 C; 19 G; 0 T; 30 other;
aacuggucgg ugauuuaggu aguuuccugu uguugggauc caccuuucuc ucgacagcac 60
gacacugccu ucauuacuuc aguug 85
//
ID rno-mir-196b-1 standard; RNA; RNO; 85 BP.
XX
AC MI0001152;
XX
DE Rattus norvegicus miR-196b-1 stem-loop
XX
RN [1]
RX PUBMED; 15105502.
RA Yekta S, Shih IH, Bartel DP;
RT "MicroRNA-directed cleavage of HOXB8 mRNA";
RL Science. 304:594-596(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314164; Mir196b.
XX
CC miR-196b is predicted based on sequence homology to miR-196a [1]. Yekta
CC et al. report that miR-196 miRNAs are expressed from HOX gene clusters in
CC mammals, and that HOX genes in these clusters are targets of miR-196.
CC Indeed, HOXB8 mRNA was shown to be a natural target for miR-196-directed
CC cleavage through a perfectly complementary miR-target site. Other HOX
CC genes have imperfect miR-196 complementary sites indicative of regulation
CC by translational repression [1]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [2]. The ends of the miRNA may be offset with respect to previous
CC annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001082"
FT /product="rno-miR-196b-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT /similarity="MI0000238"
FT miRNA 51..73
FT /accession="MIMAT0017171"
FT /product="rno-miR-196b-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 85 BP; 15 A; 21 C; 19 G; 0 T; 30 other;
aacuggucgg ugauuuaggu aguuuccugu uguugggauc caccuuucuc ucgacagcac 60
gacacugccu ucauuacuuc aguug 85
//
ID osa-MIR172d standard; RNA; OSA; 130 BP.
XX
AC MI0001154;
XX
DE Oryza sativa miR172d stem-loop
XX
RN [1]
RX PUBMED; 15685364.
RA Li Y, Li W, Jin YX;
RT "Computational identification of novel family members of microRNA genes in
RT Arabidopsis thaliana and Oryza sativa";
RL Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..41
FT /accession="MIMAT0022885"
FT /product="osa-miR172d-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 91..111
FT /accession="MIMAT0001084"
FT /product="osa-miR172d-3p"
FT /evidence=not_experimental
FT /similarity="MI0000216"
XX
SQ Sequence 130 BP; 37 A; 30 C; 31 G; 0 T; 32 other;
aaacagucgg ugcuugcagg ugcagcacca ucaagauuca caucgaguuc aucccuaaac 60
gagaucgagg uuggcugacu auaugugaug agaaucuuga ugaugcugca ucagcaaacg 120
cucgacuacu 130
//
ID osa-MIR171i standard; RNA; OSA; 120 BP.
XX
AC MI0001155;
XX
DE Oryza sativa miR171i stem-loop
XX
RN [1]
RX PUBMED; 15685364.
RA Li Y, Li W, Jin YX;
RT "Computational identification of novel family members of microRNA genes in
RT Arabidopsis thaliana and Oryza sativa";
RL Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..28
FT /accession="MIMAT0022886"
FT /product="osa-miR171i-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 88..108
FT /accession="MIMAT0001085"
FT /product="osa-miR171i-3p"
FT /evidence=not_experimental
FT /similarity="MI0000214"
XX
SQ Sequence 120 BP; 27 A; 32 C; 29 G; 0 T; 32 other;
uaaaaagagg uauuggcgug ccucaauccg aaggcauggc ugauuacagg caccucgacc 60
gaucuagcgc augcagccau guuucuugga uugagccgcg ucaauaucuc uccuugcuuc 120
//
ID mmu-mir-409 standard; RNA; MMU; 79 BP.
XX
AC MI0001160;
XX
DE Mus musculus miR-409 stem-loop
XX
RN [1]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619396; Mir409.
DR ENTREZGENE; 723862; Mir409.
XX
CC Seitz et al. predicted a cluster of 40 miRNAs in the imprinted human 14q32
CC domain, and confirmed the expression of a subset by Northern blot or
CC primer extension in mouse, including the miR-409-5p [1]. The 3' end of
CC miR-409-5p was not determined and is predicted based on a miRNA length of
CC 23 nts. Landgraf et al. later confirm expression of mature miRNAs from
CC both arms of the hairpin [3]. The mature sequence shown here represents
CC the most commonly cloned form from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0004746"
FT /product="mmu-miR-409-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT miRNA 47..68
FT /accession="MIMAT0001090"
FT /product="mmu-miR-409-3p"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2-3], Illumina [4-5]"
XX
SQ Sequence 79 BP; 17 A; 18 C; 23 G; 0 T; 21 other;
ugguacucgg agagagguua cccgagcaac uuugcaucug gaggacgaau guugcucggu 60
gaaccccuuu ucgguauca 79
//
ID mmu-mir-410 standard; RNA; MMU; 81 BP.
XX
AC MI0001161;
XX
DE Mus musculus miR-410 stem-loop
XX
RN [1]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 16566924.
RA Wheeler G, Ntounia-Fousara S, Granda B, Rathjen T, Dalmay T;
RT "Identification of new central nervous system specific mouse microRNAs";
RL FEBS Lett. 580:2195-2200(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619398; Mir410.
DR ENTREZGENE; 723863; Mir410.
XX
CC Seitz et al. predicted a cluster of 40 miRNAs in the imprinted human 14q32
CC domain, and confirmed the expression of a subset by Northern blot or
CC primer extension in mouse [1]. The mature sequence shown here represents
CC the most commonly cloned form from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0017172"
FT /product="mmu-miR-410-5p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
FT miRNA 50..70
FT /accession="MIMAT0001091"
FT /product="mmu-miR-410-3p"
FT /evidence=experimental
FT /experiment="Northern [1,3], PCR [1], cloned [2-4], insitu
FT [3], Illumina [5,7]"
XX
SQ Sequence 81 BP; 22 A; 12 C; 21 G; 0 T; 26 other;
ggguacuuga ggagagguug ucugugauga guucgcuuua uuaaugacga auauaacaca 60
gauggccugu uuucaauacc a 81
//
ID mmu-mir-376b standard; RNA; MMU; 82 BP.
XX
AC MI0001162;
XX
DE Mus musculus miR-376b stem-loop
XX
RN [1]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17322061.
RA Kawahara Y, Zinshteyn B, Sethupathy P, Iizasa H, Hatzigeorgiou AG,
RA Nishikura K;
RT "Redirection of silencing targets by adenosine-to-inosine editing of
RT miRNAs";
RL Science. 315:1137-1140(2007).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619378; Mir376b.
DR ENTREZGENE; 723934; Mir376b.
XX
CC Seitz et al. predicted a cluster of 40 miRNAs in the imprinted human 14q32
CC domain, and confirmed the expression of a subset by Northern blot or
CC primer extension in mouse [1]. The mature miR-376b products have been
CC shown to be modified by A to I edits [3]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [4].
XX
FH Key Location/Qualifiers
FH
FT modified_base 56
FT /mod_base=i
FT miRNA 14..35
FT /accession="MIMAT0003388"
FT /product="mmu-miR-376b-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [5-6]"
FT miRNA 51..71
FT /accession="MIMAT0001092"
FT /product="mmu-miR-376b-3p"
FT /evidence=experimental
FT /experiment="Northern [1], PCR [1], cloned [2,4], Illumina
FT [5-6]"
XX
SQ Sequence 82 BP; 22 A; 14 C; 16 G; 0 T; 30 other;
ugguauuuaa aagguggaua uuccuucuau gguuacgugc uuccuggaua aucauagagg 60
aacauccacu uuuucaguau ca 82
//
ID mmu-mir-411 standard; RNA; MMU; 82 BP.
XX
AC MI0001163;
XX
DE Mus musculus miR-411 stem-loop
XX
RN [1]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619399; Mir411.
DR ENTREZGENE; 723936; Mir411.
XX
CC Seitz et al. predicted a cluster of 40 miRNAs in the imprinted human 14q32
CC domain, and confirmed the expression of a subset by Northern blot or
CC primer extension in mouse, including the mature sequence from the 3' arm
CC of this hairpin [1]. Landgraf et al. later showed that the 5' product is
CC the predominant one [2]. The mature sequence shown here represents the
CC most commonly cloned form from large-scale cloning studies [2]. The 5'
CC end of the miRNA may be offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0004747"
FT /product="mmu-miR-411-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 51..72
FT /accession="MIMAT0001093"
FT /product="mmu-miR-411-3p"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2], Illumina [3-4]"
XX
SQ Sequence 82 BP; 22 A; 18 C; 19 G; 0 T; 23 other;
ugguacuugg agagauagua gaccguauag cguacgcuuu aucugugacg uauguaacac 60
gguccacuaa cccucaguau ca 82
//
ID mmu-mir-412 standard; RNA; MMU; 80 BP.
XX
AC MI0001164;
XX
DE Mus musculus miR-412 stem-loop
XX
RN [1]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619400; Mir412.
DR ENTREZGENE; 723913; Mir412.
XX
CC Seitz et al. predicted a cluster of 40 miRNAs in the imprinted human 14q32
CC domain, and confirmed the expression of a subset by Northern blot or
CC primer extension in mouse [1]. The mature sequence shown here represents
CC the most commonly cloned form from large-scale cloning studies [3]. The
CC 5' end of the miRNA may be offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0017173"
FT /product="mmu-miR-412-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 52..71
FT /accession="MIMAT0001094"
FT /product="mmu-miR-412-3p"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2-3], Illumina [4-5]"
XX
SQ Sequence 80 BP; 16 A; 19 C; 24 G; 0 T; 21 other;
ggguauggga cggauggucg accagcugga aaguaauugu uucuaaugua cuucaccugg 60
uccacuagcc gucggugccc 80
//
ID mmu-mir-370 standard; RNA; MMU; 79 BP.
XX
AC MI0001165;
XX
DE Mus musculus miR-370 stem-loop
XX
RN [1]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619375; Mir370.
DR ENTREZGENE; 723854; Mir370.
XX
CC Seitz et al. predicted a cluster of 40 miRNAs in the imprinted human 14q32
CC domain, and confirmed the expression of a subset by Northern blot or
CC primer extension in mouse [1]. The mature sequence shown here represents
CC the most commonly cloned form from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..32
FT /accession="MIMAT0017174"
FT /product="mmu-miR-370-5p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
FT miRNA 48..69
FT /accession="MIMAT0001095"
FT /product="mmu-miR-370-3p"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2-3], Illumina [4,6]"
XX
SQ Sequence 79 BP; 15 A; 19 C; 25 G; 0 T; 20 other;
agacggagag accaggucac gucucugcag uuacacagcu caugagugcc ugcuggggug 60
gaaccugguu ugucugucu 79
//
ID gga-mir-29a standard; RNA; GGA; 89 BP.
XX
AC MI0001166;
XX
DE Gallus gallus miR-29a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777794; MIR29A.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0026487"
FT /product="gga-miR-29a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 55..75
FT /accession="MIMAT0001096"
FT /product="gga-miR-29a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000576"
XX
SQ Sequence 89 BP; 23 A; 13 C; 20 G; 0 T; 33 other;
accccuuuag aggaugacug auuucuuuug guguucagag ucaauaauau uuucuagcac 60
cauuugaaau cgguuauagu gauugggga 89
//
ID gga-mir-29b-1 standard; RNA; GGA; 81 BP.
XX
AC MI0001167;
XX
DE Gallus gallus miR-29b-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777795; MIR29B-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..33
FT /accession="MIMAT0026488"
FT /product="gga-miR-29b-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 51..73
FT /accession="MIMAT0001097"
FT /product="gga-miR-29b-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000105"
XX
SQ Sequence 81 BP; 19 A; 13 C; 19 G; 0 T; 30 other;
ccucaggaag cugguuucau auggugguuu agauuuaacu auucauuguc uagcaccauu 60
ugaaaucagu guucuuggag g 81
//
ID gga-let-7i standard; RNA; GGA; 84 BP.
XX
AC MI0001168;
XX
DE Gallus gallus let-7i stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777922; MIRLET7I.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0001098"
FT /product="gga-let-7i"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000138"
XX
SQ Sequence 84 BP; 13 A; 17 C; 28 G; 0 T; 26 other;
cuggcugagg uaguaguuug ugcuguuggu cggguuguga cauugcccgc uguggagaua 60
acugcgcaag cuacugccuu gcua 84
//
ID gga-mir-135a-2 standard; RNA; GGA; 100 BP.
XX
AC MI0001169;
XX
DE Gallus gallus miR-135a-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777923; MIR135A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0001099"
FT /product="gga-miR-135a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000453"
FT miRNA 61..82
FT /accession="MIMAT0026489"
FT /product="gga-miR-135a-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 100 BP; 34 A; 12 C; 19 G; 0 T; 35 other;
agauaaauuc acucuagugu uuuauggcuu uuuauuccua ugugauagua auaaagucuc 60
auguagggau ggaagccaug aaauacauug ugaaaaauca 100
//
ID gga-mir-33-1 standard; RNA; GGA; 69 BP.
XX
AC MI0001170;
XX
DE Gallus gallus miR-33 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777924; MIR33.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..25
FT /accession="MIMAT0001100"
FT /product="gga-miR-33-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3]"
FT /similarity="MI0000707"
FT miRNA 47..66
FT /accession="MIMAT0026490"
FT /product="gga-miR-33-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 69 BP; 14 A; 13 C; 20 G; 0 T; 22 other;
cuguagugca uuguaguugc auugcaugug cuggcaguaa cugugcaaug uuccugcagu 60
gcaguacag 69
//
ID gga-let-7a-3 standard; RNA; GGA; 76 BP.
XX
AC MI0001171;
XX
DE Gallus gallus let-7a-3 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777925; MIRLET7A-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0001101"
FT /product="gga-let-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [3]"
FT /similarity="MI0000556"
FT miRNA 54..75
FT /accession="MIMAT0026491"
FT /product="gga-let-7a-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 76 BP; 16 A; 13 C; 19 G; 0 T; 28 other;
gggugaggua guagguugua uaguuuuagg guuaugcccu gccugucaga uaacuauaca 60
aucuacuguc uuuccu 76
//
ID gga-let-7b standard; RNA; GGA; 85 BP.
XX
AC MI0001172;
XX
DE Gallus gallus let-7b stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RA McBride D, Carre W, Law A, Clinton M;
RT ";
RL Unpublished.
XX
DR ENTREZGENE; 777926; MIRLET7B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0001102"
FT /product="gga-let-7b"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000558"
XX
SQ Sequence 85 BP; 20 A; 17 C; 23 G; 0 T; 25 other;
caggaugagg uaguagguug ugugguuuca ggguagugau uuugccccaa ucaggagaua 60
acuauacaac cuacugccuu cccug 85
//
ID gga-mir-99a standard; RNA; GGA; 81 BP.
XX
AC MI0001173;
XX
DE Gallus gallus miR-99a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RA McBride D, Carre W, Law A, Clinton M;
RT ";
RL Unpublished.
XX
RN [3]
RX PUBMED; 18511220.
RA Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH;
RT "Identification of novel chicken microRNAs and analysis of their genomic
RT organization";
RL Gene. 418:34-40(2008).
XX
DR ENTREZGENE; 777927; MIR99A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0001103"
FT /product="gga-miR-99a-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000101"
FT miRNA 50..70
FT /accession="MIMAT0006781"
FT /product="gga-miR-99a-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 81 BP; 19 A; 19 C; 19 G; 0 T; 24 other;
ccaauuggca uaaacccgua gauccgaucu uguguugaaa ugcacugcac aagcucgcuu 60
cuaugggucu gugucaguau g 81
//
ID gga-let-7c standard; RNA; GGA; 84 BP.
XX
AC MI0001174;
XX
DE Gallus gallus let-7c stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777928; MIRLET7C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001104"
FT /product="gga-let-7c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000559"
FT miRNA 56..77
FT /accession="MIMAT0026492"
FT /product="gga-let-7c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 84 BP; 17 A; 16 C; 24 G; 0 T; 27 other;
gcauccgggu ugagguagua gguuguaugg uuuagaguua cacccuggga guuaacugua 60
caaccuucua gcuuuccuug gagc 84
//
ID gga-mir-125b-2 standard; RNA; GGA; 90 BP.
XX
AC MI0001175;
XX
DE Gallus gallus miR-125b-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777929; MIR125B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0001105"
FT /product="gga-miR-125b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000470"
FT miRNA 57..78
FT /accession="MIMAT0026493"
FT /product="gga-miR-125b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 90 BP; 22 A; 21 C; 24 G; 0 T; 23 other;
aucagacuuu uccuaguccc ugagacccua acuugugagg uuuuguagca acaaucacaa 60
gucaggcucu ugggaccuag gcggagggga 90
//
ID gga-mir-222a standard; RNA; GGA; 98 BP.
XX
AC MI0001177;
XX
DE Gallus gallus miR-222a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777931; MIR222-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..80
FT /accession="MIMAT0001107"
FT /product="gga-miR-222a"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000299"
XX
SQ Sequence 98 BP; 22 A; 24 C; 19 G; 0 T; 33 other;
uguaguugcc caucaaucgc ucaguaguca guguagauuc ugucuuuaca aucagcagcu 60
acaucuggcu acugggucuc ugaugacauc ucauaucu 98
//
ID gga-mir-221 standard; RNA; GGA; 99 BP.
XX
AC MI0001178;
XX
DE Gallus gallus miR-221 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777932; MIR221.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..49
FT /accession="MIMAT0026494"
FT /product="gga-miR-221-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 64..86
FT /accession="MIMAT0001108"
FT /product="gga-miR-221-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000961"
XX
SQ Sequence 99 BP; 21 A; 20 C; 27 G; 0 T; 31 other;
gacuguccag guuuggggca ugaaccuggc auacaaugua gauuucugug uuuguuaagc 60
aacagcuaca uugucugcug gguuuccagc ugccuggaa 99
//
ID gga-mir-92-1 standard; RNA; GGA; 78 BP.
XX
AC MI0001179;
XX
DE Gallus gallus miR-92 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777933; MIR92.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0026495"
FT /product="gga-miR-92-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 48..68
FT /accession="MIMAT0001109"
FT /product="gga-miR-92-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000093"
XX
SQ Sequence 78 BP; 10 A; 16 C; 24 G; 0 T; 28 other;
cuuucuacac agguugggau caguugcaau gcugugcguu ucugugguau ugcacuuguc 60
ccggccuguu gagguugg 78
//
ID gga-mir-19b standard; RNA; GGA; 87 BP.
XX
AC MI0001180;
XX
DE Gallus gallus miR-19b stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777934; MIR19B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0026496"
FT /product="gga-miR-19b-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 54..76
FT /accession="MIMAT0001110"
FT /product="gga-miR-19b-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000074"
XX
SQ Sequence 87 BP; 18 A; 19 C; 21 G; 0 T; 29 other;
cacuguucuc ugguuaguuu ugcagguuug cauccagcug uaugauacuc ugcugugcaa 60
auccaugcaa aacugacugu ggcagug 87
//
ID gga-mir-20a standard; RNA; GGA; 98 BP.
XX
AC MI0001181;
XX
DE Gallus gallus miR-20a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777935; MIR20A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0001111"
FT /product="gga-miR-20a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000568"
FT miRNA 50..77
FT /accession="MIMAT0026497"
FT /product="gga-miR-20a-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 98 BP; 30 A; 19 C; 19 G; 0 T; 30 other;
ugacagcucu uguagcacua aagugcuuau agugcaggua guguucacua aucuacugca 60
uuauaagcac uuaaaguacu gcuagcugua gaacuaca 98
//
ID gga-mir-19a standard; RNA; GGA; 81 BP.
XX
AC MI0001182;
XX
DE Gallus gallus miR-19a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777936; MIR19A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0026498"
FT /product="gga-miR-19a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 49..71
FT /accession="MIMAT0001112"
FT /product="gga-miR-19a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000073"
XX
SQ Sequence 81 BP; 21 A; 13 C; 21 G; 0 T; 26 other;
gcagucuucu guuaguuuug cauaguugca cuacaggaag aauguaguug ugcaaaucua 60
ugcaaaacug augguggccu g 81
//
ID gga-mir-18a standard; RNA; GGA; 93 BP.
XX
AC MI0001183;
XX
DE Gallus gallus miR-18a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777937; MIR18A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001113"
FT /product="gga-miR-18a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000567"
FT miRNA 55..76
FT /accession="MIMAT0026499"
FT /product="gga-miR-18a-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 93 BP; 23 A; 17 C; 22 G; 0 T; 31 other;
gugcuuuuug uacuaaggug caucuagugc agauagugaa guagauuagc aucuacugcc 60
cuaagugcuc cuucuggcau aagaaguuau guc 93
//
ID gga-mir-17 standard; RNA; GGA; 85 BP.
XX
AC MI0001184;
XX
DE Gallus gallus miR-17 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777938; MIR17.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..37
FT /accession="MIMAT0001114"
FT /product="gga-miR-17-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000071"
FT miRNA 52..71
FT /accession="MIMAT0001115"
FT /product="gga-miR-17-3p"
FT /evidence=not_experimental
FT /similarity="MI0000071"
XX
SQ Sequence 85 BP; 26 A; 13 C; 22 G; 0 T; 24 other;
gucagaguaa ugucaaagug cuuacagugc agguagugau auauagaacc uacugcagug 60
aaggcacuug uagcauuaug uugac 85
//
ID gga-mir-16-1 standard; RNA; GGA; 84 BP.
XX
AC MI0001185;
XX
DE Gallus gallus miR-16-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777939; MIR16-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001116"
FT /product="gga-miR-16-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000070"
FT miRNA 54..76
FT /accession="MIMAT0026500"
FT /product="gga-miR-16-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 84 BP; 25 A; 15 C; 17 G; 0 T; 27 other;
gucugucaua cucuagcagc acguaaauau ugguguuaaa acuguaaaua ucuccaguau 60
uaacugugcu gcugaaguaa ggcu 84
//
ID gga-mir-26a standard; RNA; GGA; 77 BP.
XX
AC MI0001187;
XX
DE Gallus gallus miR-26a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777941; MIR26A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0001118"
FT /product="gga-miR-26a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000083"
FT miRNA 49..71
FT /accession="MIMAT0026501"
FT /product="gga-miR-26a-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 77 BP; 14 A; 19 C; 20 G; 0 T; 24 other;
gucaccuggu ucaaguaauc caggauaggc uguauccauu ccugcuggcc uauucuuggu 60
uacuugcacu gggaggc 77
//
ID gga-mir-153 standard; RNA; GGA; 87 BP.
XX
AC MI0001188;
XX
DE Gallus gallus miR-153 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777942; MIR153.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0026502"
FT /product="gga-miR-153-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 53..72
FT /accession="MIMAT0001119"
FT /product="gga-miR-153-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000464"
XX
SQ Sequence 87 BP; 23 A; 14 C; 23 G; 0 T; 27 other;
agcgguugcc agugucauuu uugugauguu gcagcuagua auaugagccc aguugcauag 60
ucacaaaagu gaucauugga aacugug 87
//
ID gga-mir-148a standard; RNA; GGA; 68 BP.
XX
AC MI0001189;
XX
DE Gallus gallus miR-148a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777943; MIR148A.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0026503"
FT /product="gga-miR-148a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 44..65
FT /accession="MIMAT0001120"
FT /product="gga-miR-148a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000253"
XX
SQ Sequence 68 BP; 19 A; 16 C; 15 G; 0 T; 18 other;
gaagcaaagu ucugugacac ucagacucug guuacgauag cagucagugc acuacagaac 60
uuugucuc 68
//
ID gga-mir-138-1 standard; RNA; GGA; 96 BP.
XX
AC MI0001191;
XX
DE Gallus gallus miR-138-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777945; MIR138-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..38
FT /accession="MIMAT0001122"
FT /product="gga-miR-138-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000912"
FT miRNA 64..83
FT /accession="MIMAT0026505"
FT /product="gga-miR-138-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 96 BP; 20 A; 31 C; 29 G; 0 T; 16 other;
cccugccggg ugccgugcag cagcuggugu ugugaaucag gccgucacca gucggagaac 60
ggcuacuuca caacaccagg guggcacugc accaca 96
//
ID gga-mir-128-2 standard; RNA; GGA; 84 BP.
XX
AC MI0001192;
XX
DE Gallus gallus miR-128-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777796; MIR128-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0026506"
FT /product="gga-miR-128-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 52..72
FT /accession="MIMAT0001123"
FT /product="gga-miR-128-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2], Illumina [3]"
FT /similarity="MI0000727"
XX
SQ Sequence 84 BP; 16 A; 19 C; 27 G; 0 T; 22 other;
uguccagcug gaaggggggc cguuacacug uaagagagug aguagcaggu cucacaguga 60
accggucucu uuuccugcug uguc 84
//
ID gga-mir-187 standard; RNA; GGA; 86 BP.
XX
AC MI0001193;
XX
DE Gallus gallus miR-187 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777797; MIR187.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0026507"
FT /product="gga-miR-187-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 56..75
FT /accession="MIMAT0001124"
FT /product="gga-miR-187-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000274"
XX
SQ Sequence 86 BP; 21 A; 22 C; 23 G; 0 T; 20 other;
aaacuauugu gagaccuccg gcuacaacac aggacauggg agcuuuucug aacccucgug 60
ucuuguguug cagccagagg ggcaca 86
//
ID gga-mir-32 standard; RNA; GGA; 70 BP.
XX
AC MI0001194;
XX
DE Gallus gallus miR-32 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777798; MIR32.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0001125"
FT /product="gga-miR-32-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000090"
FT miRNA 48..67
FT /accession="MIMAT0026508"
FT /product="gga-miR-32-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 70 BP; 16 A; 13 C; 17 G; 0 T; 24 other;
ggagauauug cacauuacua aguugcaugu ugucacggcc ucagugcaau uuagugugug 60
cgauacuuuc 70
//
ID gga-mir-124a standard; RNA; GGA; 96 BP.
XX
AC MI0001197;
XX
DE Gallus gallus miR-124a stem-loop
XX
RN [1]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777801; MIR124A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..36
FT /accession="MIMAT0026511"
FT /product="gga-miR-124a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 51..72
FT /accession="MIMAT0001128"
FT /product="gga-miR-124a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT /similarity="MI0000444"
XX
SQ Sequence 96 BP; 22 A; 26 C; 25 G; 0 T; 23 other;
aggcucugcc ucuccguguu cacagcggac cuugauuuaa ugucauacaa uuaaggcacg 60
cggugaaugc caagagcgga uccuccaggc ggcauu 96
//
ID gga-mir-30d standard; RNA; GGA; 64 BP.
XX
AC MI0001198;
XX
DE Gallus gallus miR-30d stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777802; MIR30D.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0001129"
FT /product="gga-miR-30d"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000255"
XX
SQ Sequence 64 BP; 13 A; 15 C; 17 G; 0 T; 19 other;
guugcuguaa acauccccga cuggaagcug uagcagcuug agcuuucagu cagauguuug 60
cugc 64
//
ID gga-mir-30b standard; RNA; GGA; 87 BP.
XX
AC MI0001199;
XX
DE Gallus gallus miR-30b stem-loop
XX
RN [1]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
RN [4]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777803; MIR30B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001130"
FT /product="gga-miR-30b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], Illumina [4]"
FT /similarity="MI0000441"
FT miRNA 54..75
FT /accession="MIMAT0026512"
FT /product="gga-miR-30b-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 87 BP; 22 A; 17 C; 21 G; 0 T; 27 other;
cuaacuuuua guuccuguaa acauccuaca cucagcuaua acaaguggua gggcuggggg 60
guggauguuu acuucaacug acuugga 87
//
ID gga-mir-217 standard; RNA; GGA; 107 BP.
XX
AC MI0001201;
XX
DE Gallus gallus miR-217 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777805; MIR217.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 32..55
FT /accession="MIMAT0001132"
FT /product="gga-miR-217-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000293"
FT miRNA 68..90
FT /accession="MIMAT0026513"
FT /product="gga-miR-217-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 107 BP; 34 A; 24 C; 20 G; 0 T; 29 other;
aaagucacug cagaguucuu gaugucgcag auacugcauc aggaacugau uggauaauaa 60
ucagucacca ucaguuccua augcauugcc uucagcaucu aaacaag 107
//
ID gga-mir-30a standard; RNA; GGA; 72 BP.
XX
AC MI0001204;
XX
DE Gallus gallus miR-30a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777808; MIR30A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0001135"
FT /product="gga-miR-30a-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000088"
FT miRNA 48..69
FT /accession="MIMAT0001136"
FT /product="gga-miR-30a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000088"
XX
SQ Sequence 72 BP; 16 A; 16 C; 23 G; 0 T; 17 other;
gcgacuguaa acauccucga cuggaagcug ugaagcagca gauggggcuu ucagucggau 60
guuugcagcu gc 72
//
ID gga-mir-30c-2 standard; RNA; GGA; 72 BP.
XX
AC MI0001205;
XX
DE Gallus gallus miR-30c-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
RN [3]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [4]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777809; MIR30C-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..30
FT /accession="MIMAT0001137"
FT /product="gga-miR-30c-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Northern [2], Illumina [4]"
FT /similarity="MI0000871"
FT miRNA 48..68
FT /accession="MIMAT0026515"
FT /product="gga-miR-30c-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 72 BP; 21 A; 17 C; 16 G; 0 T; 18 other;
agguacugua aacauccuac acucucagcu guggaaacua agaaagcugg gagaaggcug 60
uuuacucucc cu 72
//
ID gga-mir-106 standard; RNA; GGA; 81 BP.
XX
AC MI0001210;
XX
DE Gallus gallus miR-106 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777814; MIR106.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001142"
FT /product="gga-miR-106-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000113"
FT miRNA 49..70
FT /accession="MIMAT0026517"
FT /product="gga-miR-106-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 81 BP; 20 A; 19 C; 22 G; 0 T; 20 other;
ccuugaguug ugcaaaagug cuuacagugc agguagagcu cagcaccuac ugcaguauaa 60
gcacuucugg caugaccgug g 81
//
ID gga-mir-218-1 standard; RNA; GGA; 109 BP.
XX
AC MI0001212;
XX
DE Gallus gallus miR-218-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777816; MIR218-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0001144"
FT /product="gga-miR-218-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000294"
FT miRNA 66..87
FT /accession="MIMAT0026518"
FT /product="gga-miR-218-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 109 BP; 28 A; 19 C; 27 G; 0 T; 35 other;
ugauaaugua gcgagauuuu cuguugugcu ugaucuaacc augugguugu gagguaugag 60
uaaaacaugg uucugucaag caccauggaa cgucacgcag cuuucuaca 109
//
ID gga-mir-103-2 standard; RNA; GGA; 83 BP.
XX
AC MI0001213;
XX
DE Gallus gallus miR-103-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777817; MIR103-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0026519"
FT /product="gga-miR-103-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 51..73
FT /accession="MIMAT0001145"
FT /product="gga-miR-103-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000588"
XX
SQ Sequence 83 BP; 18 A; 18 C; 20 G; 0 T; 27 other;
ucucugugcu uucagcuucu uuacagugcu gccuuguugc guucauguca agcagcauug 60
uacagggcua ugaaagaaca gag 83
//
ID gga-mir-128-1 standard; RNA; GGA; 82 BP.
XX
AC MI0001217;
XX
DE Gallus gallus miR-128-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777821; MIR128-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0031096"
FT /product="gga-miR-128-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 50..70
FT /accession="MIMAT0001123"
FT /product="gga-miR-128-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2], Illumina [3]"
FT /similarity="MI0000447"
XX
SQ Sequence 82 BP; 15 A; 18 C; 20 G; 0 T; 29 other;
ugagcuguug aauucggggc cguaacacug ucugagaggu uuauauuucu cacagugaac 60
cggucucuuu uucagcugcu uc 82
//
ID gga-mir-181a-1 standard; RNA; GGA; 104 BP.
XX
AC MI0001218;
XX
DE Gallus gallus miR-181a-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777822; MIR181A-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0001168"
FT /product="gga-miR-181a-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000289"
FT miRNA 60..81
FT /accession="MIMAT0001150"
FT /product="gga-miR-181a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000289"
XX
SQ Sequence 104 BP; 24 A; 26 C; 22 G; 0 T; 32 other;
uguagugguu gcuucaguga acauucaacg cugucgguga guuuggaauu uaagugaaaa 60
ccaucgaccg uugauuguac ccuccagcua accauccucc uccu 104
//
ID gga-mir-181b-1 standard; RNA; GGA; 89 BP.
XX
AC MI0001219;
XX
DE Gallus gallus miR-181b-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777823; MIR181B-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0001151"
FT /product="gga-miR-181b-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000270"
FT miRNA 56..76
FT /accession="MIMAT0026522"
FT /product="gga-miR-181b-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 89 BP; 28 A; 20 C; 19 G; 0 T; 22 other;
aaaaggucac aaucaacauu cauugcuguc gguggguuua acuaugugga caagcucacu 60
gaacaaugaa ugcaacugug gccccacau 89
//
ID gga-mir-137 standard; RNA; GGA; 96 BP.
XX
AC MI0001221;
XX
DE Gallus gallus miR-137 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777825; MIR137.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..41
FT /accession="MIMAT0026523"
FT /product="gga-miR-137-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 55..76
FT /accession="MIMAT0001153"
FT /product="gga-miR-137-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000454"
XX
SQ Sequence 96 BP; 20 A; 17 C; 30 G; 0 T; 29 other;
ucugacucuc uucggugacg gguauucuug gguggauaau acggauuacg uuguuauugc 60
uuaagaauac gcguagucga ggagaguacc ggcggc 96
//
ID gga-mir-16-2 standard; RNA; GGA; 94 BP.
XX
AC MI0001222;
XX
DE Gallus gallus miR-16-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777826; MIR16-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0001116"
FT /product="gga-miR-16-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000844"
FT miRNA 60..81
FT /accession="MIMAT0031058"
FT /product="gga-miR-16-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 94 BP; 28 A; 21 C; 18 G; 0 T; 27 other;
ccuacuuguu ccgcccuagc agcacguaaa uauuggugua guaaaauaaa ccuuaaaccc 60
caauauuauu gugcugcuua agcguggcag agau 94
//
ID gga-mir-190a standard; RNA; GGA; 85 BP.
XX
AC MI0001224;
XX
DE Gallus gallus miR-190 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777828; MIR190.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0001155"
FT /product="gga-miR-190a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000486"
FT miRNA 52..72
FT /accession="MIMAT0026525"
FT /product="gga-miR-190a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 85 BP; 23 A; 15 C; 14 G; 0 T; 33 other;
ugcaggacuc ugugugauau guuugauaua uuagguuguu auuuaaucca acuauauauc 60
aaacauauuc cuacaguguc cugcc 85
//
ID gga-mir-7-2 standard; RNA; GGA; 99 BP.
XX
AC MI0001226;
XX
DE Gallus gallus miR-7-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777830; MIR7-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0001157"
FT /product="gga-miR-7"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000728"
XX
SQ Sequence 99 BP; 18 A; 31 C; 28 G; 0 T; 22 other;
ggacggccgc ggugcccucu ggaagacuag ugauuuuguu guuguauggc ucaucccacc 60
acaacaaguc acagucugcc uuagggcgca cggccccgc 99
//
ID gga-mir-138-2 standard; RNA; GGA; 83 BP.
XX
AC MI0001228;
XX
DE Gallus gallus miR-138-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777832; MIR138-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..25
FT /accession="MIMAT0001122"
FT /product="gga-miR-138-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000455"
FT miRNA 58..77
FT /accession="MIMAT0031069"
FT /product="gga-miR-138-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 83 BP; 16 A; 23 C; 22 G; 0 T; 22 other;
guugcugcag cugguguugu gaaucaggcc gacggcaagc gcuuccuacu auccggcuau 60
uucacuacac caggguugca uca 83
//
ID gga-mir-140 standard; RNA; GGA; 95 BP.
XX
AC MI0001229;
XX
DE Gallus gallus miR-140 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
RN [3]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777833; MIR140.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..42
FT /accession="MIMAT0001159"
FT /product="gga-miR-140-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000456"
FT miRNA 62..82
FT /accession="MIMAT0003722"
FT /product="gga-miR-140-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2]"
XX
SQ Sequence 95 BP; 15 A; 26 C; 29 G; 0 T; 25 other;
ugcgucucuc cguguccugc cagugguuuu acccuauggu agguuacguc augcuguucu 60
accacagggu agaaccacgg acgggaugcc ggggc 95
//
ID gga-let-7g standard; RNA; GGA; 83 BP.
XX
AC MI0001230;
XX
DE Gallus gallus let-7g stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777834; MIRLET7G.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..25
FT /accession="MIMAT0001160"
FT /product="gga-let-7g-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000137"
FT miRNA 62..83
FT /accession="MIMAT0026527"
FT /product="gga-let-7g-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 83 BP; 20 A; 18 C; 24 G; 0 T; 21 other;
aggcugaggu aguaguuugu acaguuugag ggucuaugau accacccggu acaggagaua 60
acuguacagg ccacugccuu gcc 83
//
ID gga-mir-135a-1 standard; RNA; GGA; 88 BP.
XX
AC MI0001231;
XX
DE Gallus gallus miR-135a-1 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777835; MIR135A-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0001099"
FT /product="gga-miR-135a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
FT /similarity="MI0000161"
FT miRNA 54..75
FT /accession="MIMAT0031036"
FT /product="gga-miR-135a-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 88 BP; 16 A; 21 C; 22 G; 0 T; 29 other;
gccucacugu ccuguauggc uuuuuauucc uaugugauua uacaucccgc uucauauagg 60
gauugaagcc gugcaaggcg cugggguc 88
//
ID gga-let-7d standard; RNA; GGA; 103 BP.
XX
AC MI0001232;
XX
DE Gallus gallus let-7d stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
DR ENTREZGENE; 777836; MIRLET7D.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0001161"
FT /product="gga-let-7d"
FT /evidence=not_experimental
FT /similarity="MI0000405"
XX
SQ Sequence 103 BP; 23 A; 17 C; 30 G; 0 T; 33 other;
auugggcucc uaggaagagg uaguggguug cauaguuuua gggcagggau uuugcucaca 60
aggagguaac uauacaaccu gcugccuuuc uuagggcuuu auu 103
//
ID gga-let-7f standard; RNA; GGA; 87 BP.
XX
AC MI0001233;
XX
DE Gallus gallus let-7f stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777837; MIRLET7F.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0001162"
FT /product="gga-let-7f-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000067"
FT miRNA 63..84
FT /accession="MIMAT0026528"
FT /product="gga-let-7f-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 87 BP; 23 A; 13 C; 20 G; 0 T; 31 other;
ucagagugag guaguagauu guauaguugu aggguaguua uuuuacccug uucaggagau 60
aacuauacaa ucuauugccu ucccuga 87
//
ID gga-let-7a-1 standard; RNA; GGA; 90 BP.
XX
AC MI0001234;
XX
DE Gallus gallus let-7a-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777838; MIRLET7A-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0001101"
FT /product="gga-let-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000556"
XX
SQ Sequence 90 BP; 24 A; 15 C; 23 G; 0 T; 28 other;
ugcacugugg gaugagguag uagguuguau aguuuuaggg ucauacccgc aacugggaga 60
uaacuauaca aucuacuguc uuuccuaaag 90
//
ID gga-mir-146a standard; RNA; GGA; 99 BP.
XX
AC MI0001235;
XX
DE Gallus gallus miR-146a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777839; MIR146A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001163"
FT /product="gga-miR-146a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000477"
FT miRNA 58..80
FT /accession="MIMAT0026529"
FT /product="gga-miR-146a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 99 BP; 19 A; 21 C; 22 G; 0 T; 37 other;
guguauccuc agcuuugaga acugaauucc auggguugua auugaauccu uugucagacc 60
cauggggcuc aguucuucag cuuggauauu ucugucuuc 99
//
ID gga-mir-218-2 standard; RNA; GGA; 95 BP.
XX
AC MI0001237;
XX
DE Gallus gallus miR-218-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777841; MIR218-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0001144"
FT /product="gga-miR-218-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000295"
FT miRNA 54..75
FT /accession="MIMAT0026518"
FT /product="gga-miR-218-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 95 BP; 24 A; 21 C; 22 G; 0 T; 28 other;
gggguuuucc uuugugcuug aucuaaccau gugguagaac aauacaaauu gaacaugguu 60
cugucaagca ccauggaagg cugcauacuc ccugc 95
//
ID gga-mir-130b standard; RNA; GGA; 77 BP.
XX
AC MI0001239;
XX
DE Gallus gallus miR-130b stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777843; MIR130B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0026530"
FT /product="gga-miR-130b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 52..73
FT /accession="MIMAT0001165"
FT /product="gga-miR-130b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000748"
XX
SQ Sequence 77 BP; 14 A; 22 C; 24 G; 0 T; 17 other;
gggcgggcug ccccucuuuc ccuguugcac uacugucacg gucgcagcga gcagugcaau 60
aaugaaaggg cgucagu 77
//
ID gga-mir-301a standard; RNA; GGA; 93 BP.
XX
AC MI0001240;
XX
DE Gallus gallus miR-301 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777844; MIR301.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..40
FT /accession="MIMAT0026531"
FT /product="gga-miR-301a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 57..81
FT /accession="MIMAT0001166"
FT /product="gga-miR-301a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000593"
XX
SQ Sequence 93 BP; 24 A; 20 C; 21 G; 0 T; 28 other;
uggcugcugg uaucgcuggc ucugacaaug uugcacuacu gucugcacaa auaaagcagu 60
gcaauaauau ugucaaagca uuugguucca guc 93
//
ID gga-mir-130a standard; RNA; GGA; 83 BP.
XX
AC MI0001241;
XX
DE Gallus gallus miR-130a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777845; MIR130A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0026532"
FT /product="gga-miR-130a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 52..73
FT /accession="MIMAT0001167"
FT /product="gga-miR-130a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000448"
XX
SQ Sequence 83 BP; 19 A; 15 C; 22 G; 0 T; 27 other;
ugcuguuguc cagagcccuu uuucuguugu acuacuggca auuaugauga gcagugcaau 60
auuaaaaggg cauuggcugg cag 83
//
ID gga-mir-181b-2 standard; RNA; GGA; 85 BP.
XX
AC MI0001242;
XX
DE Gallus gallus miR-181b-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777846; MIR181B-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001151"
FT /product="gga-miR-181b-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000683"
FT miRNA 55..75
FT /accession="MIMAT0031059"
FT /product="gga-miR-181b-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 85 BP; 23 A; 20 C; 17 G; 0 T; 25 other;
cuaauggcug caaucaacau ucauugcugu cgguggguuu ucauugcuau caacucacug 60
aucaaugaau gcaaacugcg gacca 85
//
ID gga-mir-126 standard; RNA; GGA; 84 BP.
XX
AC MI0001244;
XX
DE Gallus gallus miR-126 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
DR ENTREZGENE; 777848; MIR126.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0003723"
FT /product="gga-miR-126-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2]"
FT miRNA 51..73
FT /accession="MIMAT0001169"
FT /product="gga-miR-126-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2]"
FT /similarity="MI0000471"
XX
SQ Sequence 84 BP; 18 A; 20 C; 22 G; 0 T; 24 other;
gcuggugacg gcccauuauu acuuuuggua cgcgcuguga cacuucaaac ucguaccgug 60
aguaauaaug cgcugugguc agca 84
//
ID gga-mir-199-1 standard; RNA; GGA; 94 BP.
XX
AC MI0001245;
XX
DE Gallus gallus miR-199-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
DR ENTREZGENE; 777849; MIR199-1.
XX
CC Chicken has two loci predicted to express miR-199. mir-199-2
CC (MIR:MI0001220) is homologous to mir-199a-2 in human (MIR:MI0000281) and
CC mouse (MIR:MI0000713). mir-199-1 (MIR:MI0001245) is homologous to
CC mir-199b in human (MIR:MI0000282) and mouse (MIR:MI0000714). The
CC expression of chicken miR-199 has been verified experimentally [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0001152"
FT /product="gga-miR-199-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2]"
FT /similarity="MI0000714"
FT miRNA 53..72
FT /accession="MIMAT0003721"
FT /product="gga-miR-199-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2]"
XX
SQ Sequence 94 BP; 19 A; 26 C; 23 G; 0 T; 26 other;
cuccacuccg ucugcccagu guucagacua ccuguucagg acuacgagau uguacaguag 60
ucugcacauu gguuaggcug ugcugggaua cacc 94
//
ID gga-mir-219a standard; RNA; GGA; 85 BP.
XX
AC MI0001246;
XX
DE Gallus gallus miR-219a stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 777850; MIR219.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0001170"
FT /product="gga-miR-219a"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT /similarity="MI0000740"
XX
SQ Sequence 85 BP; 20 A; 21 C; 21 G; 0 T; 23 other;
cucugcuccu gauuguccaa acgcaauucu ugugcgcugg agccguacga accaagaauu 60
gugucuggac aucuguagca gagau 85
//
ID gga-mir-200a standard; RNA; GGA; 87 BP.
XX
AC MI0001249;
XX
DE Gallus gallus miR-200a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777853; MIR200A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0026533"
FT /product="gga-miR-200a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 52..73
FT /accession="MIMAT0001171"
FT /product="gga-miR-200a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000554"
XX
SQ Sequence 87 BP; 19 A; 17 C; 22 G; 0 T; 29 other;
gguccucugu gggcaucuua cuagacagug cuggauuucu uggaucuauu cuaacacugu 60
cugguaacga uguuuaaagg gugaacc 87
//
ID gga-mir-200b standard; RNA; GGA; 85 BP.
XX
AC MI0001250;
XX
DE Gallus gallus miR-200b stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777854; MIR200B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..30
FT /accession="MIMAT0026534"
FT /product="gga-miR-200b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 46..68
FT /accession="MIMAT0001172"
FT /product="gga-miR-200b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000944"
XX
SQ Sequence 85 BP; 15 A; 17 C; 20 G; 0 T; 33 other;
gccauuacca ucuuacuggg cagcauugga uguucucugu uuuucuaaua cugccuggua 60
augaugauug ugguguuucg ugcac 85
//
ID gga-mir-133c standard; RNA; GGA; 79 BP.
XX
AC MI0001255;
XX
DE Gallus gallus miR-133c stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777859; MIR133C.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0026537"
FT /product="gga-miR-133c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 49..70
FT /accession="MIMAT0001176"
FT /product="gga-miR-133c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000451"
XX
SQ Sequence 79 BP; 20 A; 21 C; 21 G; 0 T; 17 other;
ugccuuccug gggcugguaa aaaggaacca gaucaacuac aacuggauuu gguccccuuc 60
aaccagcugc aguggggca 79
//
ID gga-mir-30e standard; RNA; GGA; 96 BP.
XX
AC MI0001256;
XX
DE Gallus gallus miR-30e stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777860; MIR30E.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..37
FT /accession="MIMAT0001177"
FT /product="gga-miR-30e-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000749"
FT miRNA 62..82
FT /accession="MIMAT0026538"
FT /product="gga-miR-30e-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 96 BP; 17 A; 22 C; 33 G; 0 T; 24 other;
cggggcaguc aucgcugcug uaaacauccu ugacuggaag cugugaggug ucagcggggg 60
cuuucagucg gauguuuaca gcugcaggcu gcugca 96
//
ID gga-mir-30c-1 standard; RNA; GGA; 89 BP.
XX
AC MI0001257;
XX
DE Gallus gallus miR-30c-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
RN [3]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [4]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777861; MIR30C-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..40
FT /accession="MIMAT0001137"
FT /product="gga-miR-30c-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Northern [2], Illumina [4]"
FT /similarity="MI0000736"
FT miRNA 57..77
FT /accession="MIMAT0031105"
FT /product="gga-miR-30c-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 89 BP; 20 A; 22 C; 24 G; 0 T; 23 other;
accaugcugu agcacgugua aacauccuac acucucagcu gugaacucga gguggcuggg 60
agaggauugu uuacgccuuc ugccaugga 89
//
ID gga-mir-100 standard; RNA; GGA; 80 BP.
XX
AC MI0001258;
XX
DE Gallus gallus miR-100 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777862; MIR100.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0001178"
FT /product="gga-miR-100-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000102"
FT miRNA 49..69
FT /accession="MIMAT0026539"
FT /product="gga-miR-100-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 80 BP; 18 A; 20 C; 17 G; 0 T; 25 other;
ccuguugcca caaacccgua gauccgaacu uguggucaua uuccacacaa gcuuguaucu 60
auagguaugu gucugucugg 80
//
ID gga-let-7a-2 standard; RNA; GGA; 72 BP.
XX
AC MI0001259;
XX
DE Gallus gallus let-7a-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777863; MIRLET7A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0001101"
FT /product="gga-let-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000061"
FT miRNA 50..71
FT /accession="MIMAT0031037"
FT /product="gga-let-7a-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 72 BP; 21 A; 12 C; 17 G; 0 T; 22 other;
agguugaggu aguagguugu auaguuuaga auuacaccaa gggagauaac uguacaaccu 60
ccuagcuuuc cu 72
//
ID gga-mir-34b standard; RNA; GGA; 84 BP.
XX
AC MI0001260;
XX
DE Gallus gallus miR-34b stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777864; MIR34B.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0001179"
FT /product="gga-miR-34b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000404"
FT miRNA 51..72
FT /accession="MIMAT0026540"
FT /product="gga-miR-34b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 84 BP; 23 A; 23 C; 18 G; 0 T; 20 other;
gugcuugguu ugcaggcagu guaguuagcu gauuguaccc agcgccccac aaucacuaaa 60
uucacugcca ucaaaacaag gcac 84
//
ID gga-mir-34c standard; RNA; GGA; 74 BP.
XX
AC MI0001261;
XX
DE Gallus gallus miR-34c stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777865; MIR34C.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0001180"
FT /product="gga-miR-34c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000403"
FT miRNA 46..67
FT /accession="MIMAT0026541"
FT /product="gga-miR-34c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 74 BP; 24 A; 20 C; 17 G; 0 T; 13 other;
agccugguua ccaggcagug uaguuagcug auugccacca ggaccaauca cuaaccacac 60
agccagguaa aaag 74
//
ID gga-let-7k standard; RNA; GGA; 83 BP.
XX
AC MI0001263;
XX
DE Gallus gallus let-7k stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777867; MIRLET7K.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0001182"
FT /product="gga-let-7k-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000556"
FT miRNA 54..75
FT /accession="MIMAT0026543"
FT /product="gga-let-7k-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 83 BP; 21 A; 16 C; 19 G; 0 T; 27 other;
ggcugaggua guagauugaa uaguugugga guccuauccu cccuuugagc uaacuauaca 60
aucuacuguc uuuccuaagg aga 83
//
ID gga-mir-135a-3 standard; RNA; GGA; 96 BP.
XX
AC MI0001264;
XX
DE Gallus gallus miR-135a-3 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777868; MIR135A-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0001099"
FT /product="gga-miR-135a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000810"
FT miRNA 55..76
FT /accession="MIMAT0031038"
FT /product="gga-miR-135a-3-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 96 BP; 17 A; 23 C; 25 G; 0 T; 31 other;
cccucugcug uggucuaugg cuuuuuauuc cuaugugauu gcuuuuccua acucauguag 60
ggcgaaaagc caugggcuac ucaggggagg gacucc 96
//
ID gga-mir-29b-2 standard; RNA; GGA; 80 BP.
XX
AC MI0001266;
XX
DE Gallus gallus miR-29b-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777870; MIR29B-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..33
FT /accession="MIMAT0031072"
FT /product="gga-miR-29b-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 51..73
FT /accession="MIMAT0001097"
FT /product="gga-miR-29b-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000107"
XX
SQ Sequence 80 BP; 17 A; 17 C; 18 G; 0 T; 28 other;
ccucuggaag cugguuucac augguggcuu agauuuuccc acuuuguauc uagcaccauu 60
ugaaaucagu guucuaggag 80
//
ID gga-mir-196-1 standard; RNA; GGA; 95 BP.
XX
AC MI0001268;
XX
DE Gallus gallus miR-196-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777872; MIR196-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0001121"
FT /product="gga-miR-196-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000552"
FT miRNA 62..83
FT /accession="MIMAT0031017"
FT /product="gga-miR-196-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 95 BP; 30 A; 16 C; 16 G; 0 T; 33 other;
ugaacuagaa cugcucugug aauuagguag uuucauguug uugggcuuua aauuuuaaac 60
acaagaacau caaacuaccu gauuuacucc aguua 95
//
ID gga-mir-7-3 standard; RNA; GGA; 95 BP.
XX
AC MI0001269;
XX
DE Gallus gallus miR-7-3 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777873; MIR7-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0001157"
FT /product="gga-miR-7"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT /similarity="MI0000641"
XX
SQ Sequence 95 BP; 25 A; 17 C; 22 G; 0 T; 31 other;
cuguggucug gcucugugug gaagacuagu gauuuuguug uuaugauuua uaaaggugac 60
aacaaaucau agccugccau acagcacaga ucuuc 95
//
ID gga-mir-101-1 standard; RNA; GGA; 79 BP.
XX
AC MI0001270;
XX
DE Gallus gallus miR-101 stem-loop
XX
RN [1]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [2]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777874; MIR101.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..34
FT /accession="MIMAT0026545"
FT /product="gga-miR-101-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 48..69
FT /accession="MIMAT0001185"
FT /product="gga-miR-101-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT /similarity="MI0000739"
XX
SQ Sequence 79 BP; 20 A; 12 C; 21 G; 0 T; 26 other;
acuauccuuu uucgguuauc augguaccgg ugcuguauac gugaaaggua caguacugug 60
auaacugaag aaugguggu 79
//
ID gga-mir-7-1 standard; RNA; GGA; 109 BP.
XX
AC MI0001272;
XX
DE Gallus gallus miR-7-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777876; MIR7-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0001157"
FT /product="gga-miR-7"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000263"
XX
SQ Sequence 109 BP; 30 A; 17 C; 24 G; 0 T; 38 other;
uggauguugg ucuaguucug uguggaagac uagugauuuu guuguuuuua gauaauuaaa 60
uugacaacaa aucacagucu gccauauggc acagaucaug ccucuacag 109
//
ID gga-mir-23b standard; RNA; GGA; 86 BP.
XX
AC MI0001273;
XX
DE Gallus gallus miR-23b stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777877; MIR23B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0026546"
FT /product="gga-miR-23b-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 52..72
FT /accession="MIMAT0001186"
FT /product="gga-miR-23b-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000439"
XX
SQ Sequence 86 BP; 21 A; 15 C; 22 G; 0 T; 28 other;
uguuguggcu guuuggguuc cuggcaugau gauuugugag uuaagauuaa aaucacauug 60
ccagggauua ccacauagcc augacc 86
//
ID gga-mir-27b standard; RNA; GGA; 97 BP.
XX
AC MI0001274;
XX
DE Gallus gallus miR-27b stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777878; MIR27B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0026547"
FT /product="gga-miR-27b-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 61..81
FT /accession="MIMAT0001187"
FT /product="gga-miR-27b-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000440"
XX
SQ Sequence 97 BP; 20 A; 19 C; 28 G; 0 T; 30 other;
accucucugg ugaggugcag agcuuagcug auuggugaac agugauuguu ucccucuuug 60
uucacagugg cuaaguucug caccugaaga gaaggug 97
//
ID gga-mir-24 standard; RNA; GGA; 68 BP.
XX
AC MI0001275;
XX
DE Gallus gallus miR-24 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777879; MIR24.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0026548"
FT /product="gga-miR-24-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 44..65
FT /accession="MIMAT0001188"
FT /product="gga-miR-24-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000080"
XX
SQ Sequence 68 BP; 16 A; 16 C; 17 G; 0 T; 19 other;
cuccggugcc uacugagcug auaucaguuc ugauuuuaca uacuggcuca guucagcagg 60
aacaggag 68
//
ID gga-mir-31 standard; RNA; GGA; 94 BP.
XX
AC MI0001276;
XX
DE Gallus gallus miR-31 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777880; MIR31.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0001189"
FT /product="gga-miR-31-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000579"
FT miRNA 61..83
FT /accession="MIMAT0026549"
FT /product="gga-miR-31-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 94 BP; 23 A; 20 C; 22 G; 0 T; 29 other;
uucuuucaug cagagcugga ggggaggcaa gauguuggca uagcuguuaa ccuaaaaacc 60
ugcuaugcca acauauuguc aucuuuccug ucug 94
//
ID gga-mir-122-1 standard; RNA; GGA; 77 BP.
XX
AC MI0001277;
XX
DE Gallus gallus miR-122-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777881; MIR122-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0001190"
FT /product="gga-miR-122-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2], Illumina [3]"
FT /similarity="MI0000442"
FT miRNA 45..66
FT /accession="MIMAT0026550"
FT /product="gga-miR-122-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 77 BP; 22 A; 15 C; 18 G; 0 T; 22 other;
cagagcugug gagugugaca augguguuug uguccaaucu aucaaacgcc auuaucacac 60
uaaauagcua cugguag 77
//
ID gga-mir-122-2 standard; RNA; GGA; 77 BP.
XX
AC MI0001280;
XX
DE Gallus gallus miR-122-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777884; MIR122-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0001190"
FT /product="gga-miR-122-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2], Illumina [3]"
FT /similarity="MI0000442"
FT miRNA 45..66
FT /accession="MIMAT0026550"
FT /product="gga-miR-122-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 77 BP; 23 A; 15 C; 17 G; 0 T; 22 other;
cagagcuaug gagugugaca augguguuug uguccaaucu aucaaacgcc auuaucacac 60
uaaauagcua cugguag 77
//
ID gga-mir-142 standard; RNA; GGA; 88 BP.
XX
AC MI0001281;
XX
DE Gallus gallus miR-142 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
RN [3]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777885; MIR142.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001193"
FT /product="gga-miR-142-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Northern [2]"
FT /similarity="MI0000458"
FT miRNA 53..74
FT /accession="MIMAT0001194"
FT /product="gga-miR-142-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000458"
XX
SQ Sequence 88 BP; 26 A; 17 C; 22 G; 0 T; 23 other;
gacagugcag ucacccauaa aguagaaagc acuacuaaac agcacugcag gguguagugu 60
uuccuacuuu auggaugagu guacugug 88
//
ID gga-mir-9-2 standard; RNA; GGA; 87 BP.
XX
AC MI0001283;
XX
DE Gallus gallus miR-9-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
DR ENTREZGENE; 777887; MIR9-2.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0001195"
FT /product="gga-miR-9-5p"
FT /evidence=not_experimental
FT /similarity="MI0000467"
XX
SQ Sequence 87 BP; 25 A; 13 C; 19 G; 0 T; 30 other;
ggaagcgagu uguuaucuuu gguuaucuag cuguaugagu guuuuggucu ucauaaagcu 60
agauaaccga aaguaaaaac uccuuca 87
//
ID dre-mir-10b-1 standard; RNA; DRE; 78 BP.
XX
AC MI0001364;
XX
DE Danio rerio miR-10b-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
RN [3]
RX PUBMED; 16736008.
RA Woltering JM, Durston AJ;
RT "The zebrafish hoxDb cluster has been reduced to a single microRNA";
RL Nat Genet. 38:601-602(2006).
XX
DR ENTREZGENE; 100628848; mir10b-1.
XX
CC The miR-10b sequence described in [1] is offset by 2 nt with respect to
CC that cloned in mouse (MIR:MI0000221).
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..32
FT /accession="MIMAT0001268"
FT /product="dre-miR-10b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT miRNA 49..70
FT /accession="MIMAT0031919"
FT /product="dre-miR-10b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 78 BP; 26 A; 12 C; 16 G; 0 T; 24 other;
gucuauauau acccuguaga accgaauuug ugugaaaaaa uaacauucac agauucgauu 60
cuaggggagu auaugguc 78
//
ID dre-mir-181b-2 standard; RNA; DRE; 86 BP.
XX
AC MI0001367;
XX
DE Danio rerio miR-181b-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033761; mirn181b-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001270"
FT /product="dre-miR-181b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT miRNA 54..75
FT /accession="MIMAT0031920"
FT /product="dre-miR-181b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 86 BP; 28 A; 18 C; 17 G; 0 T; 23 other;
cuaaugacug caauaaacau ucauugcugu cgguggguuu cuaauagaca caacucacug 60
aucaaugaau gcaaacugcg gugcaa 86
//
ID dre-mir-183 standard; RNA; DRE; 98 BP.
XX
AC MI0001369;
XX
DE Danio rerio miR-183 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628811; mir183.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0001273"
FT /product="dre-miR-183-5p"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2]"
FT miRNA 56..76
FT /accession="MIMAT0031921"
FT /product="dre-miR-183-3p"
FT /evidence=not_experimental
XX
SQ Sequence 98 BP; 34 A; 21 C; 23 G; 0 T; 20 other;
gacuccuguu cuguguaugg cacugguaga auucacugug aaagcacacu aucagugaau 60
uaccaaaggg ccauaaacag agcagagaaa gaaccacg 98
//
ID dre-mir-192 standard; RNA; DRE; 85 BP.
XX
AC MI0001371;
XX
DE Danio rerio miR-192 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628638; mir192.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0001275"
FT /product="dre-miR-192"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2]"
XX
SQ Sequence 85 BP; 17 A; 22 C; 23 G; 0 T; 23 other;
cuaggacaca gggugaugac cuaugaauug acagccagug uuugcagucc agcugccugu 60
caguucugua ggccacugcc cuguu 85
//
ID dre-mir-196a-1 standard; RNA; DRE; 106 BP.
XX
AC MI0001372;
XX
DE Danio rerio miR-196a-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628639; mir196a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0001276"
FT /product="dre-miR-196a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 106 BP; 18 A; 23 C; 32 G; 0 T; 33 other;
cgcgcggcug gugcgugguu uagguaguuu cauguuguug ggauuggcuu ccuggcucga 60
caacaagaaa cugccuugau uacgucaguu cgucuucauc aagggc 106
//
ID dre-mir-199-1 standard; RNA; DRE; 87 BP.
XX
AC MI0001373;
XX
DE Danio rerio miR-199-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
RN [3]
RX PUBMED; 15919954.
RA Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de
RA Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH;
RT "MicroRNA expression in zebrafish embryonic development";
RL Science. 309:310-311(2005).
XX
DR ENTREZGENE; 100628962; mir199-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0001277"
FT /product="dre-miR-199-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT miRNA 53..74
FT /accession="MIMAT0003155"
FT /product="dre-miR-199-3p"
FT /evidence=experimental
FT /experiment="array [3], in-situ [3]"
XX
SQ Sequence 87 BP; 17 A; 22 C; 21 G; 0 T; 27 other;
uccugcuccg ucaucccagu guucagacua ccuguucagg aucauacugg uguacaguag 60
ucugcacauu gguuagacug ugcaugg 87
//
ID dre-mir-199-3 standard; RNA; DRE; 98 BP.
XX
AC MI0001375;
XX
DE Danio rerio miR-199-3 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628812; mir199-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0001277"
FT /product="dre-miR-199-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT miRNA 55..75
FT /accession="MIMAT0031922"
FT /product="dre-miR-199-3-3p"
FT /evidence=not_experimental
XX
SQ Sequence 98 BP; 19 A; 34 C; 23 G; 0 T; 22 other;
ccucccccuc gccugcccag uguucagacu accuguucau caugcugcag cugaacagua 60
guccgcacau ugguuaggcu gggcugggac acacacac 98
//
ID dre-mir-203a standard; RNA; DRE; 96 BP.
XX
AC MI0001376;
XX
DE Danio rerio miR-203a stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628640; mir203a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 32..55
FT /accession="MIMAT0031923"
FT /product="dre-miR-203a-5p"
FT /evidence=not_experimental
FT miRNA 70..91
FT /accession="MIMAT0001278"
FT /product="dre-miR-203a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 96 BP; 20 A; 20 C; 22 G; 0 T; 34 other;
guguuugggu cucuucuggu cccucuggug cagugguucu uaacaguuca acaguucuau 60
cucaaaauug ugaaauguuu aggaccacuu gaccag 96
//
ID dre-mir-204-1 standard; RNA; DRE; 93 BP.
XX
AC MI0001377;
XX
DE Danio rerio miR-204-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628641; mir204-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0001279"
FT /product="dre-miR-204-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT miRNA 54..75
FT /accession="MIMAT0031924"
FT /product="dre-miR-204-3p"
FT /evidence=not_experimental
XX
SQ Sequence 93 BP; 19 A; 22 C; 28 G; 0 T; 24 other;
ucaugugacc uguggacuuc ccuuugucau ccuaugccug gaguaauaga gggggcuggg 60
aagucaaagg gacgcucagg cgucaucauu cgc 93
//
ID dre-mir-205 standard; RNA; DRE; 89 BP.
XX
AC MI0001378;
XX
DE Danio rerio miR-205 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628642; mir205.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0001280"
FT /product="dre-miR-205-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT miRNA 57..78
FT /accession="MIMAT0031925"
FT /product="dre-miR-205-3p"
FT /evidence=not_experimental
XX
SQ Sequence 89 BP; 23 A; 17 C; 21 G; 0 T; 28 other;
aaacuacugu gcauucuauc cuucauucca ccggagucug uguaguuguu caaucagauu 60
ucaguggugu gaaguguagg aaacacgga 89
//
ID dre-mir-210 standard; RNA; DRE; 73 BP.
XX
AC MI0001379;
XX
DE Danio rerio miR-210 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628889; mir210.
XX
CC Lim et al. cloned this miRNA from D. rerio [1]. The 3' end of the mature
CC sequence was not determined, but was later analysed in a study of many
CC clones in mouse [2]. The most common cloned length is shown here.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0003392"
FT /product="dre-miR-210-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 48..69
FT /accession="MIMAT0001281"
FT /product="dre-miR-210-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3]"
XX
SQ Sequence 73 BP; 17 A; 24 C; 17 G; 0 T; 15 other;
gcagguaagc cacugacuaa cgcacauugc gccuauucuc cacuccacug ugcgugugac 60
agcggcuaac cag 73
//
ID dre-mir-181a-1 standard; RNA; DRE; 84 BP.
XX
AC MI0001380;
XX
DE Danio rerio miR-181a-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
DR ENTREZGENE; 100628849; mir181a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0001623"
FT /product="dre-miR-181a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000289"
FT miRNA 56..77
FT /accession="MIMAT0001282"
FT /product="dre-miR-181a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 84 BP; 22 A; 19 C; 21 G; 0 T; 22 other;
guuugccuca gugaacauuc aacgcugucg gugaguuuga gcuaaaugga aaaaaaccau 60
cgaccguuga uuguacccug cggc 84
//
ID dre-mir-214 standard; RNA; DRE; 100 BP.
XX
AC MI0001381;
XX
DE Danio rerio miR-214 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628883; mir214.
XX
FH Key Location/Qualifiers
FH
FT miRNA 62..82
FT /accession="MIMAT0001283"
FT /product="dre-miR-214"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 100 BP; 21 A; 30 C; 27 G; 0 T; 22 other;
ugacugagag cguugucugu cugccugucu acacuugcug ugcagaacuu ccugcaccug 60
uacagcaggc acagacaggc agacagaugg cagcccgccu 100
//
ID dre-mir-219-1 standard; RNA; DRE; 91 BP.
XX
AC MI0001384;
XX
DE Danio rerio miR-219-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628890; mir219-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0001286"
FT /product="dre-miR-219-5p"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2]"
XX
SQ Sequence 91 BP; 28 A; 17 C; 19 G; 0 T; 27 other;
agggucccag agauugauug uccaaacgca auucuuguaa cauauaauau aaauccaaga 60
auugugccug gacaucuguu gcuggagauu c 91
//
ID dre-mir-221 standard; RNA; DRE; 93 BP.
XX
AC MI0001387;
XX
DE Danio rerio miR-221 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033780; mir221.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..33
FT /accession="MIMAT0031926"
FT /product="dre-miR-221-5p"
FT /evidence=not_experimental
FT miRNA 48..70
FT /accession="MIMAT0001288"
FT /product="dre-miR-221-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 93 BP; 21 A; 20 C; 22 G; 0 T; 30 other;
gucgugaacc uggcauacaa uguagauuuc ugugugguac uaucuacagc uacauugucu 60
gcuggguuuc aggccagcag aauaauucug cuc 93
//
ID dre-mir-222a standard; RNA; DRE; 108 BP.
XX
AC MI0001388;
XX
DE Danio rerio miR-222 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033781; mir222.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..52
FT /accession="MIMAT0031927"
FT /product="dre-miR-222a-5p"
FT /evidence=not_experimental
FT miRNA 68..91
FT /accession="MIMAT0001289"
FT /product="dre-miR-222a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 108 BP; 18 A; 25 C; 31 G; 0 T; 34 other;
gccgguggcu uguucgggug cucaugagau gcucaguagu caguguagau ccugugucac 60
aaucagcagc uacaucuggc uacugggucu cugauggcau uuucugcu 108
//
ID dre-mir-223 standard; RNA; DRE; 99 BP.
XX
AC MI0001389;
XX
DE Danio rerio miR-223 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
DR ENTREZGENE; 100628647; mir223.
XX
FH Key Location/Qualifiers
FH
FT miRNA 71..91
FT /accession="MIMAT0001290"
FT /product="dre-miR-223"
FT /evidence=experimental
FT /experiment="PCR [1]"
XX
SQ Sequence 99 BP; 24 A; 23 C; 22 G; 0 T; 30 other;
cucuccuccu gaucuagacu cuucucuuag aguauuugac agacuguggu ugacacucga 60
ucuaaagggg ugucaguuug ucaaauaccc caagagagg 99
//
ID rno-mir-421 standard; RNA; RNO; 79 BP.
XX
AC MI0001423;
XX
DE Rattus norvegicus miR-421 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314066; Mir421.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0001320"
FT /product="rno-miR-421-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT miRNA 47..66
FT /accession="MIMAT0017175"
FT /product="rno-miR-421-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 79 BP; 25 A; 15 C; 16 G; 0 T; 23 other;
cacacuguag gccucauuaa auguuuguug aaugaaaaaa ugaaucauca acagacauua 60
auugggcgcc ugcucugug 79
//
ID hsa-mir-423 standard; RNA; HSA; 94 BP.
XX
AC MI0001445;
XX
DE Homo sapiens miR-423 stem-loop
XX
RN [1]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [4]
RX PUBMED; 18230126.
RA Afanasyeva EA, Hotz-Wagenblatt A, Glatting KH, Westermann F;
RT "New miRNAs cloned from neuroblastoma";
RL BMC Genomics. 9:52(2008).
XX
RN [5]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR HGNC; 31880; MIR423.
DR ENTREZGENE; 494335; MIR423.
XX
CC miR-423 (renamed miR-423-3p here) is expressed in human promyelocytic
CC leukemia (HL-60) cells [1]. The level of expression was shown to be
CC up-regulated 48 hours after TPA-induction. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0004748"
FT /product="hsa-miR-423-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4], Northern [4], Illumina [5]"
FT miRNA 53..75
FT /accession="MIMAT0001340"
FT /product="hsa-miR-423-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
XX
SQ Sequence 94 BP; 22 A; 24 C; 25 G; 0 T; 23 other;
auaaaggaag uuaggcugag gggcagagag cgagacuuuu cuauuuucca aaagcucggu 60
cugaggcccc ucagucuugc uuccuaaccc gcgc 94
//
ID hsa-mir-424 standard; RNA; HSA; 98 BP.
XX
AC MI0001446;
XX
DE Homo sapiens miR-424 stem-loop
XX
RN [1]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 31881; MIR424.
DR ENTREZGENE; 494336; MIR424.
XX
CC This hairpin precursor expresses a 5' arm product, named miR-424, in human
CC promyelocytic leukemia (HL-60) cells [1]. The level of expression of
CC miR-424 was shown to be up-regulated 48 hours after TPA-induction. The
CC sequence is orthologous to the experimentally verified rat miR-322 locus
CC (MIR:MI0000589), which expresses its mature product from the 3' arm of the
CC hairpin. The human miR-424 hairpin does not appear to contain the miR-322
CC sequence.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001341"
FT /product="hsa-miR-424-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
FT miRNA 48..68
FT /accession="MIMAT0004749"
FT /product="hsa-miR-424-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
XX
SQ Sequence 98 BP; 25 A; 17 C; 33 G; 0 T; 23 other;
cgaggggaua cagcagcaau ucauguuuug aaguguucua aaugguucaa aacgugaggc 60
gcugcuauac ccccucgugg ggaagguaga aggugggg 98
//
ID mmu-mir-425 standard; RNA; MMU; 85 BP.
XX
AC MI0001447;
XX
DE Mus musculus miR-425 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619401; Mir425.
DR ENTREZGENE; 723864; Mir425.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0004750"
FT /product="mmu-miR-425-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 54..74
FT /accession="MIMAT0001342"
FT /product="mmu-miR-425-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 85 BP; 19 A; 23 C; 23 G; 0 T; 20 other;
aaagugcuuu ggaaugacac gaucacuccc guugaguggg cacccaagaa gccaucggga 60
augucguguc cgcccagugc ucuuu 85
//
ID hsa-mir-425 standard; RNA; HSA; 87 BP.
XX
AC MI0001448;
XX
DE Homo sapiens miR-425 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 31882; MIR425.
DR ENTREZGENE; 494337; MIR425.
XX
CC The mature sequences were previously named miR-425-5p and miR-425-3p in
CC [2] and here. Landgraf et al. show that the 5' product is the predominant
CC one [3]. The mature sequence shown here represents the most commonly
CC cloned form from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0003393"
FT /product="hsa-miR-425-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
FT miRNA 55..76
FT /accession="MIMAT0001343"
FT /product="hsa-miR-425-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0001447"
XX
SQ Sequence 87 BP; 18 A; 25 C; 25 G; 0 T; 19 other;
gaaagcgcuu uggaaugaca cgaucacucc cguugagugg gcacccgaga agccaucggg 60
aaugucgugu ccgcccagug cucuuuc 87
//
ID zma-MIR156d standard; RNA; ZMA; 119 BP.
XX
AC MI0001456;
XX
DE Zea mays miR156d stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..35
FT /accession="MIMAT0001351"
FT /product="zma-miR156d-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000178"
FT miRNA 80..101
FT /accession="MIMAT0015124"
FT /product="zma-miR156d-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 119 BP; 24 A; 35 C; 31 G; 0 T; 29 other;
aggcucucga gagauugaca gaagagagug agcacacggc gcgacgaacg acauagcaug 60
uaugccgucc ucgccgcgug cucacuucuc uuucugucag ccucuuucuc ucgauggcu 119
//
ID zma-MIR156f standard; RNA; ZMA; 167 BP.
XX
AC MI0001457;
XX
DE Zea mays miR156f stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..40
FT /accession="MIMAT0001352"
FT /product="zma-miR156f-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000179"
FT miRNA 131..152
FT /accession="MIMAT0015125"
FT /product="zma-miR156f-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 167 BP; 31 A; 48 C; 46 G; 0 T; 42 other;
uggcugcuag augguguggc ugacagaaga gagugagcac gcaucggcca gacugcaucu 60
auauacggcu gccccaaagc gacggaucga uggaugccua gccuaggccu aggcgcagcu 120
gcuguugcgu gcucacuucu cuuucuguca gcucucucuc ucauccu 167
//
ID zma-MIR156g standard; RNA; ZMA; 121 BP.
XX
AC MI0001458;
XX
DE Zea mays miR156g stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..23
FT /accession="MIMAT0001353"
FT /product="zma-miR156g-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000178"
FT miRNA 99..120
FT /accession="MIMAT0015126"
FT /product="zma-miR156g-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 121 BP; 25 A; 32 C; 35 G; 0 T; 29 other;
ggcugacaga agagagugag cacgcaucgg ccagacugca ucuauauacg gcugcuccug 60
gcgaauggau agaugccaag gcgcagcugc uguugcgugc ucacuucucu uucugucagc 120
u 121
//
ID zma-MIR156e standard; RNA; ZMA; 126 BP.
XX
AC MI0001461;
XX
DE Zea mays miR156e stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..39
FT /accession="MIMAT0001356"
FT /product="zma-miR156e-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000180"
FT miRNA 87..108
FT /accession="MIMAT0015128"
FT /product="zma-miR156e-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 126 BP; 17 A; 45 C; 46 G; 0 T; 18 other;
ccggcgggcg cgcgcgcggu gacagaagag agugagcaca cggccggugu gacggcaccg 60
gcgcggaugu gccgucgcgg ccgcgugcuc acugcucucu cugucauccg cuggcacacc 120
cucacg 126
//
ID zma-MIR156i standard; RNA; ZMA; 117 BP.
XX
AC MI0001464;
XX
DE Zea mays miR156i stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..32
FT /accession="MIMAT0001359"
FT /product="zma-miR156i-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000180"
FT miRNA 80..101
FT /accession="MIMAT0015131"
FT /product="zma-miR156i-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 117 BP; 18 A; 40 C; 41 G; 0 T; 18 other;
cgcggcgggc ggugacagaa gagagugagc acacggccgg gcggaacggc accggcggau 60
ggugccgucg cggacgcgug cucacugcuc uaucugucau ccacucucuc ccccgcu 117
//
ID zma-MIR160b standard; RNA; ZMA; 121 BP.
XX
AC MI0001468;
XX
DE Zea mays miR160b stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [3]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001363"
FT /product="zma-miR160b-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT /similarity="MI0000192"
FT miRNA 83..103
FT /accession="MIMAT0015135"
FT /product="zma-miR160b-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 121 BP; 23 A; 32 C; 39 G; 0 T; 27 other;
cgaucggcuc gugucgugug ugccuggcuc ccuguaugcc acacauguag ccaacccgug 60
gcgugauugg augcuguggg uggcgugcaa ggagccaagc augcauaaca ggccaugauc 120
a 121
//
ID zma-MIR167c standard; RNA; ZMA; 132 BP.
XX
AC MI0001478;
XX
DE Zea mays miR167c stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0001373"
FT /product="zma-miR167c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000209"
FT miRNA 92..114
FT /accession="MIMAT0015145"
FT /product="zma-miR167c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 132 BP; 29 A; 35 C; 39 G; 0 T; 29 other;
ugcccaaggg aacgagugaa gcugccagca ugaucuagcu cggagugauc acgcgaggag 60
aacaauagcu cgaggugguc augccuugcu agaucaugcu guggcagccu cacuucuucc 120
cguccuuggg ca 132
//
ID zma-MIR166a standard; RNA; ZMA; 213 BP.
XX
AC MI0001480;
XX
DE Zea mays miR166a stem-loop
XX
RN [1]
RX PUBMED; 14999285.
RA Juarez MT, Kui JS, Thomas J, Heller BA, Timmermans MC;
RT "microRNA-mediated repression of rolled leaf1 specifies maize leaf
RT polarity";
RL Nature. 428:84-88(2004).
XX
RN [2]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [3]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0015146"
FT /product="zma-miR166a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 189..209
FT /accession="MIMAT0001375"
FT /product="zma-miR166a-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT /similarity="MI0000202"
XX
SQ Sequence 213 BP; 25 A; 78 C; 43 G; 0 T; 67 other;
ugaggggaau guugucuggc ucggggccgc cgccgccgcu ccuuccuucu cuagucucuc 60
uucucuccua gcagcuacuc uucgcuuccu acuccuaucu cgaucccucu cuucuucuuc 120
uucuucuucu uccucuuccc cccucucuug gaucgagacc gagcggacgg agacgagugg 180
uguagaucuc ggaccaggcu ucauuccccc caa 213
//
ID zma-MIR166i standard; RNA; ZMA; 83 BP.
XX
AC MI0001485;
XX
DE Zea mays miR166i stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..23
FT /accession="MIMAT0015149"
FT /product="zma-miR166i-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 63..82
FT /accession="MIMAT0001379"
FT /product="zma-miR166i-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000203"
XX
SQ Sequence 83 BP; 12 A; 27 C; 27 G; 0 T; 17 other;
ggggaauguc gucuggcgcg agaccguacc agacgacgug cucucucggu cgucggacgg 60
ucucggacca ggcuucauuc ccc 83
//
ID zma-MIR166g standard; RNA; ZMA; 126 BP.
XX
AC MI0001487;
XX
DE Zea mays miR166g stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..23
FT /accession="MIMAT0015150"
FT /product="zma-miR166g-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 106..125
FT /accession="MIMAT0001381"
FT /product="zma-miR166g-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000206"
XX
SQ Sequence 126 BP; 29 A; 33 C; 32 G; 0 T; 32 other;
ggggaauguu gucugguugg agaccuaaca ccrcgaauua aucauccaug ccauggaagc 60
agcauaugcc cgccugcauc uauccaugca ugauggugga agguuucgga ccaggcuuca 120
uucccc 126
//
ID zma-MIR166b standard; RNA; ZMA; 116 BP.
XX
AC MI0001488;
XX
DE Zea mays miR166b stem-loop
XX
RN [1]
RX PUBMED; 14999285.
RA Juarez MT, Kui JS, Thomas J, Heller BA, Timmermans MC;
RT "microRNA-mediated repression of rolled leaf1 specifies maize leaf
RT polarity";
RL Nature. 428:84-88(2004).
XX
RN [2]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [3]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..23
FT /accession="MIMAT0015151"
FT /product="zma-miR166b-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 96..115
FT /accession="MIMAT0001382"
FT /product="zma-miR166b-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT /similarity="MI0000199"
XX
SQ Sequence 116 BP; 20 A; 25 C; 27 G; 0 T; 44 other;
guggaauguu gucugguuca aggucuugcu wuccgauuug aggaugaucc augcuugcau 60
guguaguuuu uuuuguuccu cagaucuaca agaucucgga ccaggcuuca uucccc 116
//
ID zma-MIR166d standard; RNA; ZMA; 104 BP.
XX
AC MI0001490;
XX
DE Zea mays miR166d stem-loop
XX
RN [1]
RX PUBMED; 14999285.
RA Juarez MT, Kui JS, Thomas J, Heller BA, Timmermans MC;
RT "microRNA-mediated repression of rolled leaf1 specifies maize leaf
RT polarity";
RL Nature. 428:84-88(2004).
XX
RN [2]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [3]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..23
FT /accession="MIMAT0015153"
FT /product="zma-miR166d-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 84..103
FT /accession="MIMAT0001384"
FT /product="zma-miR166d-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT /similarity="MI0000202"
XX
SQ Sequence 104 BP; 18 A; 23 C; 25 G; 0 T; 38 other;
guggaauguu gucugguuca aggucuuuug cuuugugauc caucugugua gagcuucuaa 60
guauuccuug gaucugcaag aucucggacc aggcuucauu cccc 104
//
ID zma-MIR171b standard; RNA; ZMA; 85 BP.
XX
AC MI0001492;
XX
DE Zea mays miR171b stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..23
FT /accession="MIMAT0015155"
FT /product="zma-miR171b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 65..84
FT /accession="MIMAT0001386"
FT /product="zma-miR171b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000990"
XX
SQ Sequence 85 BP; 17 A; 24 C; 25 G; 0 T; 19 other;
cgggauauug gcgcgguuca aucagaaagc uugcgcucca ggcccgaggg gcuccacucu 60
uugauugagc cgugccaaua ucacg 85
//
ID zma-MIR172c standard; RNA; ZMA; 123 BP.
XX
AC MI0001496;
XX
DE Zea mays miR172c stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..23
FT /accession="MIMAT0015158"
FT /product="zma-miR172c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 103..122
FT /accession="MIMAT0001390"
FT /product="zma-miR172c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000215"
XX
SQ Sequence 123 BP; 32 A; 30 C; 27 G; 0 T; 34 other;
gugcagcacc accaagauuc acauccaacu cucacgcauc uucagugaug caugcaugcu 60
cugugauguc ucgcagcagc uauaugcaua ugugaugaga ugagaaucuu gaugaugcug 120
cau 123
//
ID gga-mir-20b standard; RNA; GGA; 85 BP.
XX
AC MI0001517;
XX
DE Gallus gallus miR-20b stem-loop
XX
RN [1]
RX PUBMED; 15590942.
RA Hubbard SJ, Grafham DV, Beattie KJ, Overton IM, McLaren SR, Croning MD,
RA Boardman PE, Bonfield JK, Burnside J, Davies RM, Farrell ER, Francis MD,
RA Griffiths-Jones S, Humphray SJ, Hyland C, Scott CE, Tang H, Taylor RG,
RA Tickle C, Brown WR, Birney E, Rogers J, Wilson SA;
RT "Transcriptome analysis for the chicken based on 19,626 finished cDNA
RT sequences and 485,337 expressed sequence tags";
RL Genome Res. 15:174-183(2005).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777891; MIR20B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0001411"
FT /product="gga-miR-20b-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000568"
FT miRNA 49..70
FT /accession="MIMAT0026551"
FT /product="gga-miR-20b-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 85 BP; 24 A; 15 C; 22 G; 0 T; 24 other;
cuagcaguau caaagugcuc auagugcagg uagcuuggca uuggaccuac uguaaugugg 60
gcacuuacag uacuguuaga uaaag 85
//
ID hsa-mir-18b standard; RNA; HSA; 71 BP.
XX
AC MI0001518;
XX
DE Homo sapiens miR-18b stem-loop
XX
RN [1]
RX PUBMED; 15944709.
RA O'Donnell KA, Wentzel EA, Zeller KI, Dang CV, Mendell JT;
RT "c-Myc-regulated microRNAs modulate E2F1 expression";
RL Nature. 435:839-843(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32025; MIR18B.
DR ENTREZGENE; 574033; MIR18B.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0001412"
FT /product="hsa-miR-18b-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000072"
FT miRNA 49..70
FT /accession="MIMAT0004751"
FT /product="hsa-miR-18b-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 71 BP; 17 A; 16 C; 17 G; 0 T; 21 other;
uguguuaagg ugcaucuagu gcaguuagug aagcagcuua gaaucuacug cccuaaaugc 60
cccuucuggc a 71
//
ID hsa-mir-20b standard; RNA; HSA; 69 BP.
XX
AC MI0001519;
XX
DE Homo sapiens miR-20b stem-loop
XX
RN [1]
RX PUBMED; 15944709.
RA O'Donnell KA, Wentzel EA, Zeller KI, Dang CV, Mendell JT;
RT "c-Myc-regulated microRNAs modulate E2F1 expression";
RL Nature. 435:839-843(2005).
XX
RN [2]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [3]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 32024; MIR20B.
DR ENTREZGENE; 574032; MIR20B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0001413"
FT /product="hsa-miR-20b-5p"
FT /evidence=experimental
FT /experiment="array-cloned [2], cloned [3-5]"
FT /similarity="MI0000076"
FT miRNA 44..65
FT /accession="MIMAT0004752"
FT /product="hsa-miR-20b-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 69 BP; 17 A; 14 C; 17 G; 0 T; 21 other;
aguaccaaag ugcucauagu gcagguaguu uuggcaugac ucuacuguag uaugggcacu 60
uccaguacu 69
//
ID mmu-mir-433 standard; RNA; MMU; 124 BP.
XX
AC MI0001525;
XX
DE Mus musculus miR-433 stem-loop
XX
RN [1]
RX PUBMED; 15854907.
RA Davis E, Caiment F, Tordoir X, Cavaille J, Ferguson-Smith A, Cockett N,
RA Georges M, Charlier C;
RT "RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11
RT locus";
RL Curr Biol. 15:743-749(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619404; Mir433.
DR ENTREZGENE; 723937; Mir433.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0001419"
FT /product="mmu-miR-433-5p"
FT /evidence=experimental
FT /experiment="PCR [1], Illumina [3-4]"
FT miRNA 67..88
FT /accession="MIMAT0001420"
FT /product="mmu-miR-433-3p"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2], Illumina [3-4]"
XX
SQ Sequence 124 BP; 27 A; 31 C; 39 G; 0 T; 27 other;
ugcccgggga gaaguacggu gagccuguca uuauucagag aggcuagauc cucuguguug 60
agaaggauca ugaugggcuc cucgguguuc uccagguagc ggcaccacac caugaaggca 120
gccc 124
//
ID mmu-mir-434 standard; RNA; MMU; 94 BP.
XX
AC MI0001526;
XX
DE Mus musculus miR-434 stem-loop
XX
RN [1]
RX PUBMED; 15854907.
RA Davis E, Caiment F, Tordoir X, Cavaille J, Ferguson-Smith A, Cockett N,
RA Georges M, Charlier C;
RT "RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11
RT locus";
RL Curr Biol. 15:743-749(2005).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619405; Mir434.
DR ENTREZGENE; 723867; Mir434.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0001421"
FT /product="mmu-miR-434-5p"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2-3], Illumina [4-5]"
FT miRNA 60..81
FT /accession="MIMAT0001422"
FT /product="mmu-miR-434-3p"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2-3], Illumina [4-5]"
XX
SQ Sequence 94 BP; 22 A; 25 C; 18 G; 0 T; 29 other;
ucgacucugg guuugaacca aagcucgacu caugguuuga accauuacuu aauucguggu 60
uugaaccauc acucgacucc ugguucgaac cauc 94
//
ID dre-mir-430b-1 standard; RNA; DRE; 81 BP.
XX
AC MI0001528;
XX
DE Danio rerio miR-430b-1 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628891; mir430b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 22 A; 12 C; 19 G; 0 T; 28 other;
caguugaggu caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430c-1 standard; RNA; DRE; 73 BP.
XX
AC MI0001529;
XX
DE Danio rerio miR-430c-1 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033785; mirn430c-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID mmu-mir-448 standard; RNA; MMU; 112 BP.
XX
AC MI0001638;
XX
DE Mus musculus miR-448 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619406; Mir448.
DR ENTREZGENE; 723914; Mir448.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR64.
CC The sequence is unrelated to C. elegans mir-64 (MIR:MI0000035).
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0017176"
FT /product="mmu-miR-448-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 72..93
FT /accession="MIMAT0001533"
FT /product="mmu-miR-448-3p"
FT /evidence=experimental
FT /experiment="Illumina [2-3]"
FT /similarity="MI0001637"
XX
SQ Sequence 112 BP; 25 A; 29 C; 30 G; 0 T; 28 other;
acgaggaggu ugaacauccu gcauagugcu gccaggaaau cccuacuuca uacuaagagg 60
gggcuggcug guugcauaug uaggaugucc caucuccugg cccacuucgu ca 112
//
ID rno-mir-448 standard; RNA; RNO; 112 BP.
XX
AC MI0001639;
XX
DE Rattus norvegicus miR-448 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314251; Mir448.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR64.
CC The sequence is unrelated to C. elegans mir-64 (MIR:MI0000035).
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0017177"
FT /product="rno-miR-448-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 72..92
FT /accession="MIMAT0001534"
FT /product="rno-miR-448-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0001637"
XX
SQ Sequence 112 BP; 24 A; 30 C; 31 G; 0 T; 27 other;
acggggaggu ugaacauccu gcauagugcu gccaggaaau cccuacuuca uacuaagagg 60
gggcuggcug guugcauaug uaggaugucc caucucccgg cccacuucgu ca 112
//
ID hsa-mir-429 standard; RNA; HSA; 83 BP.
XX
AC MI0001641;
XX
DE Homo sapiens miR-429 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 13784; MIR429.
DR ENTREZGENE; 554210; MIR429.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR201.
CC The sequence is unrelated to mouse mir-201 (MIR:MI0000244).
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..72
FT /accession="MIMAT0001536"
FT /product="hsa-miR-429"
FT /evidence=experimental
FT /experiment="cloned [1-4]"
XX
SQ Sequence 83 BP; 15 A; 27 C; 21 G; 0 T; 20 other;
cgccggccga ugggcgucuu accagacaug guuagaccug gcccucuguc uaauacuguc 60
ugguaaaacc guccauccgc ugc 83
//
ID mmu-mir-429 standard; RNA; MMU; 83 BP.
XX
AC MI0001642;
XX
DE Mus musculus miR-429 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619402; Mir429.
DR ENTREZGENE; 723865; Mir429.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR201.
CC The sequence is unrelated to mouse mir-201 (MIR:MI0000244).
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0017178"
FT /product="mmu-miR-429-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 51..72
FT /accession="MIMAT0001537"
FT /product="mmu-miR-429-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0001641"
XX
SQ Sequence 83 BP; 17 A; 21 C; 20 G; 0 T; 25 other;
ccugcugaug gaugucuuac cagacauggu uagaucugga ugcaucuguc uaauacuguc 60
ugguaaugcc guccauccac ggc 83
//
ID mmu-mir-365-2 standard; RNA; MMU; 112 BP.
XX
AC MI0001645;
XX
DE Mus musculus miR-365-2 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619372; Mir365-2.
DR ENTREZGENE; 723853; Mir365-2.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR190.
CC The sequence is unrelated to mammalian mir-190 (MIR:MI0000486).
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..51
FT /accession="MIMAT0017179"
FT /product="mmu-miR-365-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 68..89
FT /accession="MIMAT0000711"
FT /product="mmu-miR-365-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0000769"
XX
SQ Sequence 112 BP; 32 A; 22 C; 29 G; 0 T; 29 other;
agagugauca aggacagcaa gaaaaaugag ggacuuucag gggcagcugu guuuccugac 60
ucagucauaa ugccccuaaa aauccuuauu guucuugcag ugugcaucgg ag 112
//
ID mmu-mir-449a standard; RNA; MMU; 91 BP.
XX
AC MI0001649;
XX
DE Mus musculus miR-449a stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619407; Mir449a.
DR ENTREZGENE; 723868; Mir449a.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR54.
CC The sequence is unrelated to C. elegans mir-54 (MIR:MI0000025).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001542"
FT /product="mmu-miR-449a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0001648"
FT miRNA 56..77
FT /accession="MIMAT0017180"
FT /product="mmu-miR-449a-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 91 BP; 18 A; 20 C; 26 G; 0 T; 27 other;
cuguguguga uggcuuggca guguauuguu agcugguuga guaugugagc ggcaccagcu 60
aacaugcgac ugcucuccua uugcacacac a 91
//
ID rno-mir-449a standard; RNA; RNO; 91 BP.
XX
AC MI0001650;
XX
DE Rattus norvegicus miR-449a stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314068; Mir449a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001543"
FT /product="rno-miR-449a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0001648"
FT miRNA 56..77
FT /accession="MIMAT0017181"
FT /product="rno-miR-449a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 91 BP; 22 A; 18 C; 24 G; 0 T; 27 other;
cugugugcga uggguuggca guguauuguu agcugguuga guauguaaaa ggcaccagcu 60
aacaugcaac ugcucuccua uugcacauac a 91
//
ID hsa-mir-450a-1 standard; RNA; HSA; 91 BP.
XX
AC MI0001652;
XX
DE Homo sapiens miR-450a-1 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [3]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 23226537.
RA Ple H, Landry P, Benham A, Coarfa C, Gunaratne PH, Provost P;
RT "The repertoire and features of human platelet microRNAs";
RL PLoS One. 7:e50746(2012).
XX
DR HGNC; 28008; MIR450A1.
DR ENTREZGENE; 554214; MIR450A1.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR238.
CC The sequence is unrelated to C. elegans mir-238 (MIR:MI0000313).
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0001545"
FT /product="hsa-miR-450a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], array-cloned [2]"
FT miRNA 53..74
FT /accession="MIMAT0022700"
FT /product="hsa-miR-450a-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 91 BP; 30 A; 11 C; 14 G; 0 T; 36 other;
aaacgauacu aaacuguuuu ugcgaugugu uccuaauaug cacuauaaau auauugggaa 60
cauuuugcau guauaguuuu guaucaauau a 91
//
ID mmu-mir-450a-1 standard; RNA; MMU; 91 BP.
XX
AC MI0001653;
XX
DE Mus musculus miR-450a-1 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619410; Mirn450-1.
DR ENTREZGENE; 723869; Mir450-1.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR238.
CC The sequence is unrelated to C. elegans mir-238 (MIR:MI0000313).
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0001546"
FT /product="mmu-miR-450a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0001652"
FT miRNA 53..74
FT /accession="MIMAT0017182"
FT /product="mmu-miR-450a-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 91 BP; 26 A; 11 C; 19 G; 0 T; 35 other;
gagagauacu gagcuguuuu ugcgaugugu uccuaauaug ugcuauaauu auauugggaa 60
cauuuugcau aaauagcuuu gugucaauac a 91
//
ID rno-mir-450a standard; RNA; RNO; 91 BP.
XX
AC MI0001654;
XX
DE Rattus norvegicus miR-450a stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314069; Mir450a.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR238.
CC The sequence is unrelated to C. elegans mir-238 (MIR:MI0000313).
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0001547"
FT /product="rno-miR-450a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0001652"
FT miRNA 52..72
FT /accession="MIMAT0017183"
FT /product="rno-miR-450a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 91 BP; 25 A; 13 C; 21 G; 0 T; 32 other;
gagagaugcg gagcuguuuu ugcgaugugu uccuaaugug ugcuacaauu auauugggaa 60
cauuuugcau aaauaguuuu acaucgacac a 91
//
ID rno-mir-365 standard; RNA; RNO; 86 BP.
XX
AC MI0001656;
XX
DE Rattus norvegicus miR-365 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314252; Mir365.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR245.
CC The sequence is unrelated to C. elegans mir-245 (MIR:MI0000321).
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..31
FT /accession="MIMAT0017184"
FT /product="rno-miR-365-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 55..76
FT /accession="MIMAT0001549"
FT /product="rno-miR-365-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0000767"
XX
SQ Sequence 86 BP; 25 A; 19 C; 18 G; 0 T; 24 other;
acagcaagaa aaaugaggga cuuucagggg cagcuguguu uccugacuca gucauaaugc 60
cccuaaaaau ccuuauuguu cuugca 86
//
ID osa-MIR390 standard; RNA; OSA; 91 BP.
XX
AC MI0001690;
XX
DE Oryza sativa miR390 stem-loop
XX
RN [1]
RX PUBMED; 15805478.
RA Sunkar R, Girke T, Jain PK, Zhu JK;
RT "Cloning and characterization of microRNAs from rice";
RL Plant Cell. 17:1397-1411(2005).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0001588"
FT /product="osa-miR390-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 56..75
FT /accession="MIMAT0022888"
FT /product="osa-miR390-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 91 BP; 23 A; 22 C; 22 G; 0 T; 24 other;
gguauggaac aauccuugaa gcucaggagg gauagcgccu cgaaaucaaa cuaggcgcua 60
ucuauccuga gcuccauggu uuguucuuac c 91
//
ID osa-MIR396e standard; RNA; OSA; 184 BP.
XX
AC MI0001703;
XX
DE Oryza sativa miR396e stem-loop
XX
RN [1]
RX PUBMED; 15805478.
RA Sunkar R, Girke T, Jain PK, Zhu JK;
RT "Cloning and characterization of microRNAs from rice";
RL Plant Cell. 17:1397-1411(2005).
XX
RN [2]
RX PUBMED; 19903869.
RA Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
RT "Rice MicroRNA effector complexes and targets";
RL Plant Cell. 21:3421-3435(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0001601"
FT /product="osa-miR396e-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
FT miRNA 152..175
FT /accession="MIMAT0015159"
FT /product="osa-miR396e-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 184 BP; 34 A; 43 C; 52 G; 0 T; 55 other;
gcgggcaugc uuuccacagg cuuucuugaa cugugaacuc gugggggugu augugcucau 60
guugggauug uggucggugg ccuccaauuc ucugaaaaga aagcugaauu gucgagcucc 120
ccguucuguc uuuggucguc ucuaccuguu gaugguucaa gaaagcccau ggaaaccaug 180
ccgc 184
//
ID osa-MIR444a standard; RNA; OSA; 131 BP.
XX
AC MI0001719;
XX
DE Oryza sativa miR444a stem-loop
XX
RN [1]
RX PUBMED; 15805478.
RA Sunkar R, Girke T, Jain PK, Zhu JK;
RT "Cloning and characterization of microRNAs from rice";
RL Plant Cell. 17:1397-1411(2005).
XX
RN [2]
RX PUBMED; 18353984.
RA Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR,
RA Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ;
RT "Genome-wide analysis for discovery of rice microRNAs reveals natural
RT antisense microRNAs (nat-miRNAs)";
RL Proc Natl Acad Sci U S A. 105:4951-4956(2008).
XX
RN [3]
RX PUBMED; 21791435.
RA Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q;
RT "Differential expression of the microRNAs in superior and inferior
RT spikelets in rice (Oryza sativa)";
RL J Exp Bot. 62:4943-4954(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..40
FT /accession="MIMAT0020918"
FT /product="osa-miR444a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 94..114
FT /accession="MIMAT0005790"
FT /product="osa-miR444a-3p.2"
FT /evidence=experimental
FT /experiment="MPSS [2], Northern [2]"
FT miRNA 99..119
FT /accession="MIMAT0001617"
FT /product="osa-miR444a-3p.1"
FT /evidence=experimental
FT /experiment="cloned [1], MPSS [2], Northern [2]"
XX
SQ Sequence 131 BP; 33 A; 27 C; 34 G; 0 T; 37 other;
augcaauugg gggcagcaag cuagaggugg caacugcaua auuugcaaga aauuguuggc 60
ugaagaucau accgaugaua uucuugcaag uuaugcaguu gcugccucaa gcuugcugcc 120
uccuguugcc a 131
//
ID hsa-mir-433 standard; RNA; HSA; 93 BP.
XX
AC MI0001723;
XX
DE Homo sapiens miR-433 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 32026; MIR433.
DR ENTREZGENE; 574034; MIR433.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0026554"
FT /product="hsa-miR-433-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 64..85
FT /accession="MIMAT0001627"
FT /product="hsa-miR-433-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3]"
XX
SQ Sequence 93 BP; 19 A; 19 C; 31 G; 0 T; 24 other;
ccggggagaa guacggugag ccugucauua uucagagagg cuagauccuc uguguugaga 60
aggaucauga ugggcuccuc gguguucucc agg 93
//
ID rno-mir-433 standard; RNA; RNO; 93 BP.
XX
AC MI0001724;
XX
DE Rattus norvegicus miR-433 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314197; Mir433.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0017192"
FT /product="rno-miR-433-5p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
FT miRNA 64..85
FT /accession="MIMAT0001628"
FT /product="rno-miR-433-3p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT /similarity="MI0001723"
XX
SQ Sequence 93 BP; 19 A; 19 C; 31 G; 0 T; 24 other;
ccggggagaa guacggugag ccugucauua uucagagagg cuagauccuc uguguugaga 60
aggaucauga ugggcuccuc gguguucucc agg 93
//
ID hsa-mir-329-1 standard; RNA; HSA; 80 BP.
XX
AC MI0001725;
XX
DE Homo sapiens miR-329-1 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [3]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 32050; MIR329-1.
DR ENTREZGENE; 574408; MIR329-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0026555"
FT /product="hsa-miR-329-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 50..71
FT /accession="MIMAT0001629"
FT /product="hsa-miR-329-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], array-cloned [2], Illumina
FT [5]"
XX
SQ Sequence 80 BP; 18 A; 16 C; 18 G; 0 T; 28 other;
gguaccugaa gagagguuuu cuggguuucu guuucuuuaa ugaggacgaa acacaccugg 60
uuaaccucuu uuccaguauc 80
//
ID hsa-mir-329-2 standard; RNA; HSA; 84 BP.
XX
AC MI0001726;
XX
DE Homo sapiens miR-329-2 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [3]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 32051; MIR329-2.
DR ENTREZGENE; 574409; MIR329-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0026555"
FT /product="hsa-miR-329-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 52..73
FT /accession="MIMAT0001629"
FT /product="hsa-miR-329-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], array-cloned [2], Illumina
FT [5]"
XX
SQ Sequence 84 BP; 19 A; 16 C; 19 G; 0 T; 30 other;
gugguaccug aagagagguu uucuggguuu cuguuucuuu auugaggacg aaacacaccu 60
gguuaaccuc uuuuccagua ucaa 84
//
ID rno-mir-451 standard; RNA; RNO; 72 BP.
XX
AC MI0001731;
XX
DE Rattus norvegicus miR-451 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314070; Mir451.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0001633"
FT /product="rno-miR-451-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2], SOLiD [3]"
FT /similarity="MI0001729"
FT miRNA 44..66
FT /accession="MIMAT0017193"
FT /product="rno-miR-451-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 72 BP; 17 A; 14 C; 18 G; 0 T; 23 other;
uuugggaaug gcgaggaaac cguuaccauu acugaguuua guaaugguaa ugguucucuu 60
gcugcuccca ca 72
//
ID hsa-mir-452 standard; RNA; HSA; 85 BP.
XX
AC MI0001733;
XX
DE Homo sapiens miR-452 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [3]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 32054; MIR452.
DR ENTREZGENE; 574412; MIR452.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001635"
FT /product="hsa-miR-452-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], array-cloned [2]"
FT miRNA 58..79
FT /accession="MIMAT0001636"
FT /product="hsa-miR-452-3p"
FT /evidence=experimental
FT /experiment="array-cloned [2], cloned [4]"
XX
SQ Sequence 85 BP; 25 A; 17 C; 18 G; 0 T; 25 other;
gcuaagcacu uacaacuguu ugcagaggaa acugagacuu uguaacuaug ucucagucuc 60
aucugcaaag aaguaagugc uuugc 85
//
ID mmu-mir-452 standard; RNA; MMU; 85 BP.
XX
AC MI0001734;
XX
DE Mus musculus miR-452 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619450; Mir452.
DR ENTREZGENE; 723919; Mir452.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0001637"
FT /product="mmu-miR-452-5p"
FT /evidence=experimental
FT /experiment="Illumina [2-3]"
FT /similarity="MI0001733"
FT miRNA 53..74
FT /accession="MIMAT0017194"
FT /product="mmu-miR-452-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 85 BP; 25 A; 16 C; 19 G; 0 T; 25 other;
gcuaagcagu uacaacuguu ugcagaggaa acugagacuu uauaacuaug ucucagucuc 60
aucugcaaag agguaagugc uuugc 85
//
ID hsa-mir-409 standard; RNA; HSA; 79 BP.
XX
AC MI0001735;
XX
DE Homo sapiens miR-409 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [3]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32055; MIR409.
DR ENTREZGENE; 574413; MIR409.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0001638"
FT /product="hsa-miR-409-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4]"
FT miRNA 47..68
FT /accession="MIMAT0001639"
FT /product="hsa-miR-409-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], array-cloned [2]"
XX
SQ Sequence 79 BP; 16 A; 19 C; 23 G; 0 T; 21 other;
ugguacucgg ggagagguua cccgagcaac uuugcaucug gacgacgaau guugcucggu 60
gaaccccuuu ucgguauca 79
//
ID zma-MIR171d standard; RNA; ZMA; 121 BP.
XX
AC MI0001792;
XX
DE Zea mays miR171d stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0015160"
FT /product="zma-miR171d-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 82..102
FT /accession="MIMAT0001694"
FT /product="zma-miR171d-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000214"
XX
SQ Sequence 121 BP; 29 A; 26 C; 32 G; 0 T; 34 other;
agaaauggaa guguaacuau gguguuggcu cggcucacuc agaaguugaa gccgaaucca 60
aaugguagcu gccggcguuu cugauugagc cgugccaaua ucucaguacu cuuucaugcu 120
g 121
//
ID zma-MIR399b standard; RNA; ZMA; 122 BP.
XX
AC MI0001804;
XX
DE Zea mays miR399b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0015171"
FT /product="zma-miR399b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 83..103
FT /accession="MIMAT0001706"
FT /product="zma-miR399b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001061"
XX
SQ Sequence 122 BP; 27 A; 33 C; 34 G; 0 T; 28 other;
guagcucagg gugcgaauca cagugcagcu cuccucuggc augaaggcug ugagagaggc 60
augacaauuu cuggccuugc ccugccaaag gagagcuguc cugccauuca uuagcccugc 120
aa 122
//
ID zma-MIR399d standard; RNA; ZMA; 125 BP.
XX
AC MI0001805;
XX
DE Zea mays miR399d stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..38
FT /accession="MIMAT0015172"
FT /product="zma-miR399d-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 86..106
FT /accession="MIMAT0001707"
FT /product="zma-miR399d-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001061"
XX
SQ Sequence 125 BP; 27 A; 37 C; 35 G; 0 T; 26 other;
ucaaggugag aaucacagug uggcucuccu cuggcaugaa ggcgcggcug agaggcacga 60
acaguuucug gccuuccccu gccaaugcca aaggagagcu gcccugccau ucguuagccc 120
ugcaa 125
//
ID zma-MIR399f standard; RNA; ZMA; 105 BP.
XX
AC MI0001807;
XX
DE Zea mays miR399f stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0015174"
FT /product="zma-miR399f-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 66..86
FT /accession="MIMAT0001709"
FT /product="zma-miR399f-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001063"
XX
SQ Sequence 105 BP; 25 A; 29 C; 26 G; 0 T; 25 other;
caggaugugc accugcauuu cugggcaacu ucuccuuugg cagaugcgcg agaaugugcc 60
acugcugcca aaggaaauuu gccccggaau ucaucugcac aagca 105
//
ID zma-MIR159a standard; RNA; ZMA; 246 BP.
XX
AC MI0001809;
XX
DE Zea mays miR159a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0015176"
FT /product="zma-miR159a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 207..227
FT /accession="MIMAT0001711"
FT /product="zma-miR159a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001093"
XX
SQ Sequence 246 BP; 40 A; 65 C; 66 G; 0 T; 75 other;
ucgaugcuuu ggguuugaag cggagcuccu aucauuccaa ugaagggucg uuccgaaggg 60
cugguuccgc ugcucguuca ugguucccac uauccuaucu caucaugugu auauauguaa 120
uccauggggg aggguuucuc ucgucuuuga gauaggcuug ugguuugcau gaccgaggag 180
cugcaccgcc cccuugcugg ccgcucuuug gauugaaggg agcucugcau ccugauccac 240
cccucc 246
//
ID zma-MIR319b standard; RNA; ZMA; 213 BP.
XX
AC MI0001815;
XX
DE Zea mays miR319b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0015182"
FT /product="zma-miR319b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 175..194
FT /accession="MIMAT0001717"
FT /product="zma-miR319b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001099"
XX
SQ Sequence 213 BP; 47 A; 58 C; 61 G; 0 T; 47 other;
gacgacgaug gcuggaugga agagagcguc cuucagucca cucaggggcg gugcuagggu 60
cgaauuagcu gccgacucau ucacccacau gccaagcaaa cggccaugga aaccagcuuu 120
gcagaugagu gaaugaagcg ggagguaaaa gcuucgaucu cgcaccgucu uugcuuggac 180
ugaagggugc ucccuccucc cucgcuccuu guu 213
//
ID zma-MIR166k standard; RNA; ZMA; 168 BP.
XX
AC MI0001817;
XX
DE Zea mays miR166k stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0015184"
FT /product="zma-miR166k-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 129..149
FT /accession="MIMAT0001719"
FT /product="zma-miR166k-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001107"
XX
SQ Sequence 168 BP; 28 A; 41 C; 53 G; 0 T; 46 other;
gcaugcucgg guuaggucag ggggauuguu gucuggcucg gggucuccgg ucgagaucga 60
uucauaacau auacguacgu gcuucuagcc uugccggcgg agcuagucgu ugucgucgac 120
cggagauuuc ggaccaggcu ucaaucccuu ugaccaugcg gcauuagg 168
//
ID zma-MIR166j standard; RNA; ZMA; 154 BP.
XX
AC MI0001818;
XX
DE Zea mays miR166j stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0015185"
FT /product="zma-miR166j-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 115..135
FT /accession="MIMAT0001720"
FT /product="zma-miR166j-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001108"
XX
SQ Sequence 154 BP; 36 A; 34 C; 40 G; 0 T; 44 other;
caaguugaag auuagguuaa gggguuuguu ugucugguuc aaggucgcca cacagcaggg 60
aaaacccauu ucgccuugaa gcaugcacca ugaugggugu accuguuggu gaucucggac 120
caggcuucaa ucccuuuaac uagcgucugc auau 154
//
ID zma-MIR167e standard; RNA; ZMA; 119 BP.
XX
AC MI0001819;
XX
DE Zea mays miR167e stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001721"
FT /product="zma-miR167e-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001109"
FT miRNA 81..102
FT /accession="MIMAT0015186"
FT /product="zma-miR167e-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 119 BP; 27 A; 28 C; 32 G; 0 T; 32 other;
uugguguguc cucuaguagc ugaagcugcc agcaugaucu gaggugucca cagcauauau 60
auggaagcag cuagcgauca gaucaugcug ugcaguuuca ucugcucgug gacgcacac 119
//
ID zma-MIR167h standard; RNA; ZMA; 143 BP.
XX
AC MI0001822;
XX
DE Zea mays miR167h stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001724"
FT /product="zma-miR167h-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001114"
FT miRNA 107..125
FT /accession="MIMAT0015189"
FT /product="zma-miR167h-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 143 BP; 25 A; 41 C; 42 G; 0 T; 35 other;
acuuugcugc ugugagaggu ugaagcugcc agcaugaucu ggcugcucag acgccggcgg 60
gcgucucgag ugcucgcucg aucgucggug acgcuuggau ucaccagauc auguugcagc 120
uucacucucu cgcagccagc aaa 143
//
ID zma-MIR167i standard; RNA; ZMA; 130 BP.
XX
AC MI0001823;
XX
DE Zea mays miR167i stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001725"
FT /product="zma-miR167i-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001114"
FT miRNA 94..112
FT /accession="MIMAT0015190"
FT /product="zma-miR167i-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 130 BP; 25 A; 42 C; 33 G; 0 T; 30 other;
acuucgcugg ugugagagcu ugaagcugcc agcaugaucu ggcurcucaa acgccgccgg 60
ccucccaagu gcucgaucgg uggcgcuuca ccagaucaug uugcagcuuc acucucucgc 120
aaccagcgaa 130
//
ID zma-MIR168b standard; RNA; ZMA; 104 BP.
XX
AC MI0001825;
XX
DE Zea mays miR168b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001727"
FT /product="zma-miR168b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001115"
FT miRNA 67..86
FT /accession="MIMAT0015192"
FT /product="zma-miR168b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 104 BP; 14 A; 39 C; 37 G; 0 T; 14 other;
uccgccgcgc cgucucgggc ucgcuuggug cagaucggga cccgccgccc ggccgacggg 60
acggaucccg ccuugcauca agugaaucgg agccggcgca gcga 104
//
ID zma-MIR169j standard; RNA; ZMA; 151 BP.
XX
AC MI0001832;
XX
DE Zea mays miR169j stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001734"
FT /product="zma-miR169j-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001126"
FT miRNA 116..133
FT /accession="MIMAT0015197"
FT /product="zma-miR169j-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 151 BP; 23 A; 42 C; 44 G; 0 T; 42 other;
gcgauaagag ucuguccaga uagccaagga ugacuugccu guggcuucuu ggcuuggcuu 60
ggcucgggca aaaccuugug cacguuuuau ugcucgccuc guggccucga ucacaggcag 120
ucuccuuggc uaguccgggc gggccccuua u 151
//
ID zma-MIR171e standard; RNA; ZMA; 126 BP.
XX
AC MI0001837;
XX
DE Zea mays miR171e stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0015200"
FT /product="zma-miR171e-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 87..107
FT /accession="MIMAT0001739"
FT /product="zma-miR171e-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001136"
XX
SQ Sequence 126 BP; 28 A; 30 C; 32 G; 0 T; 36 other;
agaaauggaa uaguagcuau gauguuggcu cggcucacuc agacgacgua cgcgcgcgag 60
aucaugugcu augccgcugc uguuucugau ugagccgugc caauaucuua guacucuucc 120
augcau 126
//
ID zma-MIR166l standard; RNA; ZMA; 137 BP.
XX
AC MI0001841;
XX
DE Zea mays miR166l stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..43
FT /accession="MIMAT0015203"
FT /product="zma-miR166l-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 98..118
FT /accession="MIMAT0001743"
FT /product="zma-miR166l-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001142"
XX
SQ Sequence 137 BP; 31 A; 30 C; 36 G; 0 T; 40 other;
aaagaacggg aggaggguuu cuggaaugga ggcuggucca agauccuuag guguuaaagc 60
auuauauugc cuuguuucug guuuuguguu ugagaucucg gaccaggcuu cauuccucaa 120
acccacgcuc ccgacac 137
//
ID zma-MIR166m standard; RNA; ZMA; 156 BP.
XX
AC MI0001842;
XX
DE Zea mays miR166m stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0015204"
FT /product="zma-miR166m-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 117..137
FT /accession="MIMAT0001744"
FT /product="zma-miR166m-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001143"
XX
SQ Sequence 156 BP; 22 A; 46 C; 52 G; 0 T; 36 other;
uccuuggucu ggggguuugu ggggaauguu ggcuggcucg aggcauccgc guccuggcuc 60
gcagucgcag cgcagaucgu guuuugccug cuaccggccg gacagaucga gaggcgucgg 120
accaggcuuc auuccucgca aaccggugca ucccca 156
//
ID dre-let-7a-1 standard; RNA; DRE; 89 BP.
XX
AC MI0001857;
XX
DE Danio rerio let-7a-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628813; mirlet7a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001759"
FT /product="dre-let-7a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 89 BP; 24 A; 17 C; 23 G; 0 T; 25 other;
gacgguggga ugagguagua gguuguauag uuuuaggguc acacccacac ugggagauaa 60
cuauacaacc uacugucuuu cucaaaguc 89
//
ID dre-let-7a-3 standard; RNA; DRE; 107 BP.
XX
AC MI0001860;
XX
DE Danio rerio let-7a-3 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628892; mirlet7a-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0001759"
FT /product="dre-let-7a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 107 BP; 22 A; 18 C; 31 G; 0 T; 36 other;
gagacugucg uuugggguga gguaguaggu uguauaguuu gaggguuuaa cccuugcugu 60
cagauaacua uacaacuuac ugucuuuccc gaaguggccg uaguguc 107
//
ID dre-let-7a-5 standard; RNA; DRE; 124 BP.
XX
AC MI0001862;
XX
DE Danio rerio let-7a-5 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628651; mirlet7a-5.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..49
FT /accession="MIMAT0001759"
FT /product="dre-let-7a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 124 BP; 25 A; 21 C; 36 G; 0 T; 42 other;
guacguguuu uuggugucug gacaagguga gguaguaggu uguauaguuu ggugggaggg 60
aucaaacccu guucagcuga uaacuauaca gucuauugcc uuccuugugu caccuaaggu 120
cugc 124
//
ID dre-let-7a-6 standard; RNA; DRE; 129 BP.
XX
AC MI0001863;
XX
DE Danio rerio let-7a-6 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628652; mirlet7a-6.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..50
FT /accession="MIMAT0001759"
FT /product="dre-let-7a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 129 BP; 34 A; 24 C; 33 G; 0 T; 38 other;
cacagugaac cuguguguuu cuucaaggug agguaguagg uuguauaguu ugugggaagg 60
aucacauccu auucagguga uaacuauaca gucuauugcc uucccugaga gacacaauga 120
ccacgagug 129
//
ID dre-let-7b standard; RNA; DRE; 94 BP.
XX
AC MI0001865;
XX
DE Danio rerio let-7b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628814; mirlet7b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001760"
FT /product="dre-let-7b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 94 BP; 18 A; 18 C; 29 G; 0 T; 29 other;
ucggacaggg ugagguagua gguugugugg uuucaggguu guguuuuugc cccaucagga 60
guuaacuaua caaccuacug ccuucccuga aggg 94
//
ID dre-let-7c-1 standard; RNA; DRE; 107 BP.
XX
AC MI0001866;
XX
DE Danio rerio let-7c-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628653; mirlet7c-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0001761"
FT /product="dre-let-7c-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 68..89
FT /accession="MIMAT0031930"
FT /product="dre-let-7c-3p"
FT /evidence=not_experimental
XX
SQ Sequence 107 BP; 23 A; 21 C; 30 G; 0 T; 33 other;
cugagagugu gugcauccag gcugagguag uagguuguau gguuuagaau uuugcccugg 60
gaguuaacug uacaaccuuc uagcuuuccu uggagcucac aagccag 107
//
ID dre-let-7c-2 standard; RNA; DRE; 92 BP.
XX
AC MI0001867;
XX
DE Danio rerio let-7c-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628893; mirlet7c-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0001761"
FT /product="dre-let-7c-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 60..81
FT /accession="MIMAT0031930"
FT /product="dre-let-7c-3p"
FT /evidence=not_experimental
XX
SQ Sequence 92 BP; 21 A; 18 C; 25 G; 0 T; 28 other;
gugugcaucc aggcugaggu aguagguugu augguuucga augacaccau gggaguuaac 60
uguacaaccu ucuagcuuuc cuuggaguac ac 92
//
ID dre-let-7d-1 standard; RNA; DRE; 97 BP.
XX
AC MI0001868;
XX
DE Danio rerio let-7d-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628963; mirlet7d-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0001762"
FT /product="dre-let-7d-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 63..84
FT /accession="MIMAT0031931"
FT /product="dre-let-7d-3p"
FT /evidence=not_experimental
XX
SQ Sequence 97 BP; 18 A; 20 C; 28 G; 0 T; 31 other;
ugugcguugc ggugugaggu aguugguugu augguuuugc auaauaaaca gcccggaguu 60
aacuguacaa ccuucuagcu uucccugcgg cugcacg 97
//
ID dre-let-7d-2 standard; RNA; DRE; 88 BP.
XX
AC MI0001870;
XX
DE Danio rerio let-7d-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628654; mirlet7d-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001762"
FT /product="dre-let-7d-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 59..80
FT /accession="MIMAT0031931"
FT /product="dre-let-7d-3p"
FT /evidence=not_experimental
XX
SQ Sequence 88 BP; 16 A; 19 C; 24 G; 0 T; 29 other;
cgcugcaggc ugagguaguu gguuguaugg uuuugcauca uaaucagccu ggaguuaacu 60
guacaaccuu cuagcuuucc cugcggug 88
//
ID dre-mir-9-1 standard; RNA; DRE; 87 BP.
XX
AC MI0001880;
XX
DE Danio rerio miR-9-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
RN [2]
RX PUBMED; 15919954.
RA Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de
RA Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH;
RT "MicroRNA expression in zebrafish embryonic development";
RL Science. 309:310-311(2005).
XX
DR ENTREZGENE; 100628659; mir9-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0001769"
FT /product="dre-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 55..75
FT /accession="MIMAT0003156"
FT /product="dre-miR-9-3p"
FT /evidence=experimental
FT /experiment="array [2], in-situ [2]"
XX
SQ Sequence 87 BP; 24 A; 14 C; 19 G; 0 T; 30 other;
gggguuggcu guuaucuuug guuaucuagc uguaugagug uuauucauuc uucauaaagc 60
uagauaaccg aaaguaacaa gaauccc 87
//
ID dre-mir-9-2 standard; RNA; DRE; 136 BP.
XX
AC MI0001881;
XX
DE Danio rerio miR-9-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
RN [2]
RX PUBMED; 15919954.
RA Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de
RA Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH;
RT "MicroRNA expression in zebrafish embryonic development";
RL Science. 309:310-311(2005).
XX
DR ENTREZGENE; 100033554; mirn9-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 42..64
FT /accession="MIMAT0001769"
FT /product="dre-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 80..100
FT /accession="MIMAT0003156"
FT /product="dre-miR-9-3p"
FT /evidence=experimental
FT /experiment="array [2], in-situ [2]"
XX
SQ Sequence 136 BP; 29 A; 28 C; 36 G; 0 T; 43 other;
gcucuccucu ggugacuuuu gcacuuggag gcguguuguu aucuuugguu aucuagcugu 60
augagugugc uggccgucau aaagcuagau aaccgaaagu aagagccgcu ucuaucagca 120
acguauggag cauugc 136
//
ID dre-mir-9-4 standard; RNA; DRE; 87 BP.
XX
AC MI0001882;
XX
DE Danio rerio miR-9-4 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628660; mir9-4.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0001769"
FT /product="dre-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 53..74
FT /accession="MIMAT0031932"
FT /product="dre-miR-9-4-3p"
FT /evidence=not_experimental
XX
SQ Sequence 87 BP; 25 A; 11 C; 17 G; 0 T; 34 other;
uggguuaguu uuucucuuug guuaucuagc uguaugaguu uaugugauau cauaaagcua 60
gagaaccgaa uguauaaacu aauucca 87
//
ID dre-mir-9-3 standard; RNA; DRE; 101 BP.
XX
AC MI0001883;
XX
DE Danio rerio miR-9-3 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
RN [2]
RX PUBMED; 15919954.
RA Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de
RA Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH;
RT "MicroRNA expression in zebrafish embryonic development";
RL Science. 309:310-311(2005).
XX
DR ENTREZGENE; 100628895; mir9-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0001769"
FT /product="dre-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 57..77
FT /accession="MIMAT0003156"
FT /product="dre-miR-9-3p"
FT /evidence=experimental
FT /experiment="array [2], in-situ [2]"
XX
SQ Sequence 101 BP; 30 A; 16 C; 21 G; 0 T; 34 other;
ucaggggguu gguuucucuc uuugguuauc uagcuguaug aguuauaaca cugucauaaa 60
gcuagauaac cgaaaguaga aauaauuccc aaaaucuuug g 101
//
ID dre-mir-9-5 standard; RNA; DRE; 87 BP.
XX
AC MI0001884;
XX
DE Danio rerio miR-9-5 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
RN [2]
RX PUBMED; 15919954.
RA Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de
RA Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH;
RT "MicroRNA expression in zebrafish embryonic development";
RL Science. 309:310-311(2005).
XX
DR ENTREZGENE; 100628896; mir9-5.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0001769"
FT /product="dre-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 54..74
FT /accession="MIMAT0003156"
FT /product="dre-miR-9-3p"
FT /evidence=experimental
FT /experiment="array [2], in-situ [2]"
XX
SQ Sequence 87 BP; 26 A; 15 C; 18 G; 0 T; 28 other;
ggaagcgagu uguuaucuuu gguuaucuag cuguaugagu auuuugcacu ucauaaagcu 60
agauaaccga aaguaaaaac ugccucc 87
//
ID dre-mir-9-6 standard; RNA; DRE; 88 BP.
XX
AC MI0001885;
XX
DE Danio rerio miR-9-6 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
RN [2]
RX PUBMED; 15919954.
RA Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de
RA Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH;
RT "MicroRNA expression in zebrafish embryonic development";
RL Science. 309:310-311(2005).
XX
DR ENTREZGENE; 100033558; mirn9-6.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0001769"
FT /product="dre-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 55..75
FT /accession="MIMAT0003156"
FT /product="dre-miR-9-3p"
FT /evidence=experimental
FT /experiment="array [2], in-situ [2]"
XX
SQ Sequence 88 BP; 23 A; 15 C; 20 G; 0 T; 30 other;
ggagguaguu gcuaucuuug guuaucuagc uguaugagug uuuaucugcc uucauaaagc 60
uagauaaccg aaaguagaaa uguccucc 88
//
ID dre-mir-9-7 standard; RNA; DRE; 84 BP.
XX
AC MI0001886;
XX
DE Danio rerio miR-9-7 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628661; mir9-7.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0001769"
FT /product="dre-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 51..72
FT /accession="MIMAT0031933"
FT /product="dre-miR-9-7-3p"
FT /evidence=not_experimental
XX
SQ Sequence 84 BP; 27 A; 11 C; 17 G; 0 T; 29 other;
ggguuaguuu uucucuuugg uuaucuagcu guaugaguua ugaaauauca uaaagcuaga 60
gaaccgaaag uagaaacuau accu 84
//
ID dre-mir-10b-2 standard; RNA; DRE; 92 BP.
XX
AC MI0001887;
XX
DE Danio rerio miR-10b-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628816; mir10b-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0001268"
FT /product="dre-miR-10b-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 57..77
FT /accession="MIMAT0031934"
FT /product="dre-miR-10b-2-3p"
FT /evidence=not_experimental
XX
SQ Sequence 92 BP; 31 A; 20 C; 18 G; 0 T; 23 other;
guagucgucu auauguaccc uguagaaccg aauuuguguc caaaacauca aaaucgcaaa 60
uacgucucua caggaauaca ugggcgacgu aa 92
//
ID dre-mir-10d standard; RNA; DRE; 118 BP.
XX
AC MI0001889;
XX
DE Danio rerio miR-10d stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628853; mir10d.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..50
FT /accession="MIMAT0001771"
FT /product="dre-miR-10d-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 68..89
FT /accession="MIMAT0003394"
FT /product="dre-miR-10d-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 118 BP; 32 A; 22 C; 27 G; 0 T; 37 other;
uggaagcuuu guuccgucgu cuauauauac ccuguagaac cgaaugugug uuuacacagc 60
aaauucacag auucgguuuu aggggaguau auggacgaug caaaaacguc ugcuuuca 118
//
ID dre-mir-15a-1 standard; RNA; DRE; 84 BP.
XX
AC MI0001891;
XX
DE Danio rerio miR-15a-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628663; mir15a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001772"
FT /product="dre-miR-15a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 52..73
FT /accession="MIMAT0003395"
FT /product="dre-miR-15a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 84 BP; 19 A; 18 C; 29 G; 0 T; 18 other;
ccugucggua cuguagcagc acagaauggu uugugaguua uaacgggggu gcaggccgua 60
cugugcugcg gcaacaacga cagg 84
//
ID dre-mir-15b standard; RNA; DRE; 134 BP.
XX
AC MI0001893;
XX
DE Danio rerio miR-15b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628897; mir15b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..60
FT /accession="MIMAT0001773"
FT /product="dre-miR-15b-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 79..100
FT /accession="MIMAT0031936"
FT /product="dre-miR-15b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 134 BP; 30 A; 29 C; 32 G; 0 T; 43 other;
gucugucguc aucuuuuuau uuagcccuga gugcccugua gcagcacauc augguuugua 60
aguuauaagg gcaaauuccg aaucaugaug ugcugucacu gggagccugg gaguuucucc 120
auuaacauga cagc 134
//
ID dre-mir-16a standard; RNA; DRE; 87 BP.
XX
AC MI0001894;
XX
DE Danio rerio miR-16a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628664; mir16a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0001774"
FT /product="dre-miR-16a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 87 BP; 21 A; 20 C; 20 G; 0 T; 26 other;
ccuuccucgc uuuagcagca cguaaauauu gguguguuau agucaaggcc aaccccaaua 60
uuaugugugc ugcuucagua aggcagg 87
//
ID dre-mir-16b standard; RNA; DRE; 140 BP.
XX
AC MI0001895;
XX
DE Danio rerio miR-16b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628884; mir16b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..60
FT /accession="MIMAT0001775"
FT /product="dre-miR-16b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 140 BP; 25 A; 36 C; 46 G; 0 T; 33 other;
ccugaacuug gccgugugac agacuggcug ccuggcugua gcagcacgua aauauuggag 60
ucaaagcacu ugcgaauccu ccaguauuga ccgugcugcu ggaguuaggc gggccguuua 120
ccgucugcgg gggccucggg 140
//
ID dre-mir-16c standard; RNA; DRE; 136 BP.
XX
AC MI0001896;
XX
DE Danio rerio miR-16c stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033569; mirn16c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 35..56
FT /accession="MIMAT0001776"
FT /product="dre-miR-16c-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 76..98
FT /accession="MIMAT0031937"
FT /product="dre-miR-16c-3p"
FT /evidence=not_experimental
XX
SQ Sequence 136 BP; 29 A; 30 C; 35 G; 0 T; 42 other;
gagguugugu gugugugcgu guguugucuu gcuuuagcag cauguaaaua uuggaguuac 60
uccuuggcca augccuccaa uauugcucgu gcugcugaag caagaaguca ccaagcagca 120
caugcacguc auccuu 136
//
ID dre-mir-17a-1 standard; RNA; DRE; 138 BP.
XX
AC MI0001897;
XX
DE Danio rerio miR-17a-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628665; mir17a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 41..62
FT /accession="MIMAT0001777"
FT /product="dre-miR-17a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 79..100
FT /accession="MIMAT0003396"
FT /product="dre-miR-17a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 138 BP; 33 A; 28 C; 32 G; 0 T; 45 other;
ggacuuucuu gaguggacuu gguugguguc aauguauugu caaagugcuu acagugcagg 60
uaguauuaug gaauaucuac ugcaguggag gcacuucuag caauacacuu gaccauuuua 120
accuuccucc aggcaucc 138
//
ID dre-mir-17a-2 standard; RNA; DRE; 83 BP.
XX
AC MI0001898;
XX
DE Danio rerio miR-17a-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628666; mir17a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001777"
FT /product="dre-miR-17a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 50..72
FT /accession="MIMAT0031938"
FT /product="dre-miR-17a-2-3p"
FT /evidence=not_experimental
XX
SQ Sequence 83 BP; 22 A; 17 C; 20 G; 0 T; 24 other;
gucacuguag ugucaaagug cuuacagugc agguaguuca auauaaucua cugcagugga 60
ggcacuucaa gcuuuaccgu gac 83
//
ID dre-mir-20b standard; RNA; DRE; 94 BP.
XX
AC MI0001899;
XX
DE Danio rerio miR-20b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628898; mir20b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0001778"
FT /product="dre-miR-20b-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 56..78
FT /accession="MIMAT0031939"
FT /product="dre-miR-20b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 94 BP; 19 A; 24 C; 25 G; 0 T; 26 other;
gaguuugucc uggcaguucc aaagugcuca cagugcaggu agugccagug gaucuacugc 60
aaugucugca cuucaaguau ugccggacgc cuuc 94
//
ID dre-mir-18a standard; RNA; DRE; 83 BP.
XX
AC MI0001900;
XX
DE Danio rerio miR-18a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628854; mir18a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001779"
FT /product="dre-miR-18a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 83 BP; 18 A; 19 C; 24 G; 0 T; 22 other;
ggcuuugugc uaaggugcau cuagugcaga uagugaagua gacuagcacc uacugcccua 60
agugcuccuu cuggcacgag ggu 83
//
ID dre-mir-18c standard; RNA; DRE; 85 BP.
XX
AC MI0001902;
XX
DE Danio rerio miR-18c stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628817; mir18c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001781"
FT /product="dre-miR-18c"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 85 BP; 16 A; 16 C; 23 G; 0 T; 30 other;
gccuuccugc uaaggugcau cuuguguagu uagugaagua gucuaguauc uacugcgcua 60
gauguuccuu uuggcaggag uagcu 85
//
ID dre-mir-19a standard; RNA; DRE; 89 BP.
XX
AC MI0001903;
XX
DE Danio rerio miR-19a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628668; mir19a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0003398"
FT /product="dre-miR-19a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 53..75
FT /accession="MIMAT0001782"
FT /product="dre-miR-19a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 89 BP; 22 A; 17 C; 24 G; 0 T; 26 other;
uggugcaguu cucugcuagu uuugcauagu ugcacuacaa gaaaacggga guugugcaaa 60
ucuaugcaaa acugauggug gccugcugc 89
//
ID dre-mir-19b standard; RNA; DRE; 87 BP.
XX
AC MI0001904;
XX
DE Danio rerio miR-19b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628669; mir19b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0003399"
FT /product="dre-miR-19b-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 55..77
FT /accession="MIMAT0001783"
FT /product="dre-miR-19b-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 87 BP; 17 A; 21 C; 23 G; 0 T; 26 other;
gcuggacccc cggucaguuu ugcugguuug cauucagcuu uuaagacugu gcgcugugca 60
aauccaugca aaacugauug uggcagc 87
//
ID dre-mir-19c standard; RNA; DRE; 105 BP.
XX
AC MI0001905;
XX
DE Danio rerio miR-19c stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628899; mir19c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..47
FT /accession="MIMAT0031940"
FT /product="dre-miR-19c-5p"
FT /evidence=not_experimental
FT miRNA 64..86
FT /accession="MIMAT0001784"
FT /product="dre-miR-19c-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 105 BP; 28 A; 25 C; 26 G; 0 T; 26 other;
uggaaaagcc cuguuaucug gggugaguuu ugcaggauug cauccggcuu uauuacaaca 60
ugcugugcaa auccaugcaa aacucgcugc gccagggaca aacca 105
//
ID dre-mir-19d standard; RNA; DRE; 87 BP.
XX
AC MI0001906;
XX
DE Danio rerio miR-19d stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628670; mir19d.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0031941"
FT /product="dre-miR-19d-5p"
FT /evidence=not_experimental
FT miRNA 53..75
FT /accession="MIMAT0001785"
FT /product="dre-miR-19d-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 87 BP; 14 A; 24 C; 30 G; 0 T; 19 other;
guugugugac ggucagcuuu gcgggguggg cagucagccu ccguguggcc gcugugcaaa 60
cccaugcaaa acugagcgcu gcgcuac 87
//
ID dre-mir-20a standard; RNA; DRE; 153 BP.
XX
AC MI0001907;
XX
DE Danio rerio miR-20a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628671; mir20a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..73
FT /accession="MIMAT0001786"
FT /product="dre-miR-20a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 88..109
FT /accession="MIMAT0003400"
FT /product="dre-miR-20a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 153 BP; 38 A; 26 C; 35 G; 0 T; 54 other;
ucuuaaauaa aucuccuaau guugcaguug uguuagaguu ucagcagugc uaaagugcuu 60
auagugcagg uaguauuucu gucaucuacu gcagugugag cacuugaagu acuucuagcu 120
uaaugcgucu gggauccgaa gauuucugcu aga 153
//
ID dre-mir-21-1 standard; RNA; DRE; 148 BP.
XX
AC MI0001908;
XX
DE Danio rerio miR-21-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628952; mir21-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..71
FT /accession="MIMAT0001787"
FT /product="dre-miR-21"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 148 BP; 31 A; 28 C; 35 G; 0 T; 54 other;
uuaugugucu uuauuggcgu ggauauaagu cuuucccagu gugucagaua gcuuaucaga 60
cugguguugg cuguuacauu cgcccggcga caacagucug uaggcugucu gacauuuugg 120
gcauuuucuu cuccgauuaa aaauauga 148
//
ID dre-mir-22a standard; RNA; DRE; 86 BP.
XX
AC MI0001910;
XX
DE Danio rerio miR-22a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628672; mir22a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0031942"
FT /product="dre-miR-22a-5p"
FT /evidence=not_experimental
FT miRNA 55..76
FT /accession="MIMAT0001788"
FT /product="dre-miR-22a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 86 BP; 17 A; 21 C; 23 G; 0 T; 25 other;
gcugaccugc agcaguucuu cacuggcaag cuuuaugucc uuguguacca gcuaaagcug 60
ccagcugaag aacuguugug guuggc 86
//
ID dre-mir-22b standard; RNA; DRE; 82 BP.
XX
AC MI0001912;
XX
DE Danio rerio miR-22b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628900; mir22b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0031943"
FT /product="dre-miR-22b-5p"
FT /evidence=not_experimental
FT miRNA 51..72
FT /accession="MIMAT0001789"
FT /product="dre-miR-22b-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 82 BP; 17 A; 18 C; 21 G; 0 T; 26 other;
guuacuucac agucguucuu cacuggcuag cuuuaugugg cagcaccuua aagcugccag 60
uugaagagcu guugugggua ac 82
//
ID dre-mir-23a-2 standard; RNA; DRE; 98 BP.
XX
AC MI0001915;
XX
DE Danio rerio miR-23a-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0031944"
FT /product="dre-miR-23a-5p"
FT /evidence=not_experimental
FT miRNA 57..78
FT /accession="MIMAT0001790"
FT /product="dre-miR-23a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 98 BP; 23 A; 23 C; 25 G; 0 T; 27 other;
cucuucugcc ggccagggga auuccuggca gagugauuuu uaaaccuaau gacugaauca 60
cauugccagg gauuuccaau ggcucgugug acucagag 98
//
ID dre-mir-23a-3 standard; RNA; DRE; 78 BP.
XX
AC MI0001916;
XX
DE Danio rerio miR-23a-3 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628818; mir23a-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0031945"
FT /product="dre-miR-23a-3-5p"
FT /evidence=not_experimental
FT miRNA 48..69
FT /accession="MIMAT0001790"
FT /product="dre-miR-23a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 78 BP; 21 A; 16 C; 20 G; 0 T; 21 other;
ccagcuggag ggauuccugg cagagugauu ugggauuaua ucauaaaauc acauugccag 60
ggauuuccaa ccagcugu 78
//
ID dre-mir-24-2 standard; RNA; DRE; 82 BP.
XX
AC MI0001919;
XX
DE Danio rerio miR-24-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628901; mir24-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..72
FT /accession="MIMAT0001792"
FT /product="dre-miR-24"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 82 BP; 12 A; 20 C; 30 G; 0 T; 20 other;
gggcuggucu ccugugccug cugugcugau aaucagugga cggcugugac uggcucaguu 60
cagcaggaac aggggccugg uc 82
//
ID dre-mir-24-3 standard; RNA; DRE; 142 BP.
XX
AC MI0001920;
XX
DE Danio rerio miR-24-3 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628676; mir24-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 80..101
FT /accession="MIMAT0001792"
FT /product="dre-miR-24"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 142 BP; 38 A; 38 C; 37 G; 0 T; 29 other;
gcugaacggg agucauauga gagauagaug gagcuggccu cccgugccua cugagcugau 60
uacaguacug ugcaaacacu ggcucaguuc agcaggaaca ggagucuggu ccacaaacuc 120
caccaaacac ugcugcuuca gc 142
//
ID dre-mir-24-1 standard; RNA; DRE; 80 BP.
XX
AC MI0001921;
XX
DE Danio rerio miR-24-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628855; mir24-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..70
FT /accession="MIMAT0001792"
FT /product="dre-miR-24"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 80 BP; 18 A; 19 C; 23 G; 0 T; 20 other;
accugagcuc cggugccuuc ugagcugaua ucaguuguag uaaaucacug gcucaguuca 60
gcaggaacag gaguguggcc 80
//
ID dre-mir-25 standard; RNA; DRE; 82 BP.
XX
AC MI0001922;
XX
DE Danio rerio miR-25 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628677; mir25.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0031946"
FT /product="dre-miR-25-5p"
FT /evidence=not_experimental
FT miRNA 51..72
FT /accession="MIMAT0001793"
FT /product="dre-miR-25-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 82 BP; 13 A; 23 C; 30 G; 0 T; 16 other;
gccggcgcug agaggcggag acuugggcag cugccgucau ucccagaagg cauugcacuu 60
gucucggucu gacaguggcg gc 82
//
ID dre-mir-26a-1 standard; RNA; DRE; 78 BP.
XX
AC MI0001923;
XX
DE Danio rerio miR-26a-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628819; mir26a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001794"
FT /product="dre-miR-26a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 49..70
FT /accession="MIMAT0031947"
FT /product="dre-miR-26a-3p"
FT /evidence=not_experimental
XX
SQ Sequence 78 BP; 18 A; 13 C; 24 G; 0 T; 23 other;
uuuggccugg uucaaguaau ccaggauagg cuugugaugu ccggaaagcc uauucgggau 60
gacuugguuc aggaauga 78
//
ID dre-mir-26a-2 standard; RNA; DRE; 128 BP.
XX
AC MI0001925;
XX
DE Danio rerio miR-26a-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033596; mir26a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 37..58
FT /accession="MIMAT0001794"
FT /product="dre-miR-26a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 73..94
FT /accession="MIMAT0031948"
FT /product="dre-miR-26a-2-3p"
FT /evidence=not_experimental
XX
SQ Sequence 128 BP; 23 A; 28 C; 37 G; 0 T; 40 other;
guguggacuu gagugcugga agugguuguu cccuuguuca aguaauccag gauaggcugu 60
cuguccugga ggccuauuca ugauuacuug cacuaggugg cagccguugc ccuucaugga 120
acucaugc 128
//
ID dre-mir-26b standard; RNA; DRE; 97 BP.
XX
AC MI0001927;
XX
DE Danio rerio miR-26b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628679; mir26b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0001795"
FT /product="dre-miR-26b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 97 BP; 19 A; 21 C; 26 G; 0 T; 31 other;
gcauuuggcc uuugccuggu ucaaguaauc caggauaggu uaguucccac uaguacggcc 60
uauucuuggu uacuuguuuc aggaggaggc uacgagc 97
//
ID dre-mir-27a standard; RNA; DRE; 131 BP.
XX
AC MI0001928;
XX
DE Danio rerio miR-27a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628680; mir27a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 37..60
FT /accession="MIMAT0031949"
FT /product="dre-miR-27a-5p"
FT /evidence=not_experimental
FT miRNA 79..100
FT /accession="MIMAT0001796"
FT /product="dre-miR-27a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 131 BP; 29 A; 33 C; 33 G; 0 T; 36 other;
ucuggauaug augucugcug aaguuucgug aggugcagga cuuagcucac ucugugaaca 60
gaucucggau auccuauguu cacaguggcu aaguuccgcu ccucugaggc ccacacucga 120
aaucagccag g 131
//
ID dre-mir-27b standard; RNA; DRE; 91 BP.
XX
AC MI0001929;
XX
DE Danio rerio miR-27b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628681; mir27b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..40
FT /accession="MIMAT0031950"
FT /product="dre-miR-27b-5p"
FT /evidence=not_experimental
FT miRNA 57..78
FT /accession="MIMAT0001797"
FT /product="dre-miR-27b-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 91 BP; 21 A; 15 C; 26 G; 0 T; 29 other;
ucuuuucuag caggugcaga gcuuagcuga uuggugaaca gugauugaac ucuuuguuca 60
caguggcuaa guucugcauc ugaggagagg a 91
//
ID dre-mir-27c standard; RNA; DRE; 88 BP.
XX
AC MI0001930;
XX
DE Danio rerio miR-27c stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628820; mir27c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0003401"
FT /product="dre-miR-27c-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 56..76
FT /accession="MIMAT0001798"
FT /product="dre-miR-27c-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 88 BP; 20 A; 22 C; 21 G; 0 T; 25 other;
gguugugugg ugucaggacu uaacccacuu gugaacaaug caucgaacuu caauguucac 60
agugguuaag uucugccgcc ccuagacc 88
//
ID dre-mir-27d standard; RNA; DRE; 89 BP.
XX
AC MI0001931;
XX
DE Danio rerio miR-27d stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628856; mir27d.
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..78
FT /accession="MIMAT0001799"
FT /product="dre-miR-27d"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 89 BP; 18 A; 16 C; 27 G; 0 T; 28 other;
uucugagcgg gugcagagcu uggcugauug gugaacgugc auggcuugug uuuuuguuca 60
caguggcuaa guucuucacc cgaaaagaa 89
//
ID dre-mir-27e standard; RNA; DRE; 106 BP.
XX
AC MI0001932;
XX
DE Danio rerio miR-27e stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033604; mirn27e.
XX
FH Key Location/Qualifiers
FH
FT miRNA 65..86
FT /accession="MIMAT0001800"
FT /product="dre-miR-27e"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 106 BP; 27 A; 24 C; 29 G; 0 T; 26 other;
gucaucacuc gcucacggcg cagagcuuag cuaaucggug agcauugauc ccuuaagaaa 60
acuguucaca guggcuaagu ucagugucug gagugaacgg gaugac 106
//
ID dre-mir-29b-1 standard; RNA; DRE; 83 BP.
XX
AC MI0001933;
XX
DE Danio rerio miR-29b-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628903; mir29b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..73
FT /accession="MIMAT0001801"
FT /product="dre-miR-29b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 83 BP; 19 A; 18 C; 21 G; 0 T; 25 other;
cugcuccugg aagcugaauu cagauggugc cauagaguau uuuauggcau cuagcaccau 60
uugaaaucag uguuccuggg ccg 83
//
ID dre-mir-29b-2 standard; RNA; DRE; 88 BP.
XX
AC MI0001934;
XX
DE Danio rerio miR-29b-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628682; mir29b-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 55..76
FT /accession="MIMAT0001801"
FT /product="dre-miR-29b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 88 BP; 18 A; 17 C; 23 G; 0 T; 30 other;
ucuuccucca gaugcugguu ucacauggug guuuagaugu guucuaccaa agucuagcac 60
cauuugaaau caguguucuu ggggaggg 88
//
ID dre-mir-29a standard; RNA; DRE; 126 BP.
XX
AC MI0001938;
XX
DE Danio rerio miR-29a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628904; mir29a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 81..102
FT /accession="MIMAT0001802"
FT /product="dre-miR-29a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 126 BP; 29 A; 36 C; 20 G; 0 T; 41 other;
ugaagacccu caucucucuc ucucucuccc caccaaacga ugacugauuu ccuuuggugc 60
uuagaguccc aucugucauc uagcaccauu ugaaaucggu uauaaugacu ggggaucaau 120
ucuuca 126
//
ID dre-mir-30a standard; RNA; DRE; 89 BP.
XX
AC MI0001940;
XX
DE Danio rerio miR-30a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033609; mir30a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001803"
FT /product="dre-miR-30a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 57..78
FT /accession="MIMAT0031951"
FT /product="dre-miR-30a-3p"
FT /evidence=not_experimental
XX
SQ Sequence 89 BP; 19 A; 20 C; 22 G; 0 T; 28 other;
ggcuccuugc aguuguaaac auucccgacu ggaaguugua augcagaaaa ucucagcuuu 60
cagucugaug uuugcugcua cugguggcc 89
//
ID dre-mir-30b standard; RNA; DRE; 88 BP.
XX
AC MI0001941;
XX
DE Danio rerio miR-30b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628684; mir30b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001804"
FT /product="dre-miR-30b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 88 BP; 16 A; 19 C; 30 G; 0 T; 23 other;
uuccagugua gucgcuguaa acauccuaca cucagcugug agcugcagac gaggcugggc 60
ggaggguguu ugcugugacu gucuggag 88
//
ID dre-mir-30c standard; RNA; DRE; 79 BP.
XX
AC MI0001944;
XX
DE Danio rerio miR-30c stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628685; mir30c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001805"
FT /product="dre-miR-30c-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 50..71
FT /accession="MIMAT0031952"
FT /product="dre-miR-30c-3p"
FT /evidence=not_experimental
XX
SQ Sequence 79 BP; 14 A; 21 C; 26 G; 0 T; 18 other;
cuucagggag uguaaacauc cuacacucuc agcuggagcg cagccgaggc cgggaguggg 60
auguuugcgc ucucuggcu 79
//
ID dre-mir-30d standard; RNA; DRE; 128 BP.
XX
AC MI0001946;
XX
DE Danio rerio miR-30d stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628857; mir30d.
XX
FH Key Location/Qualifiers
FH
FT miRNA 35..56
FT /accession="MIMAT0001806"
FT /product="dre-miR-30d"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 128 BP; 25 A; 28 C; 33 G; 0 T; 42 other;
gugcuguaua uggguauaac ugguuguuca ugccuguaaa cauccccgac uggaagcugu 60
gcuacgcgga aaacgagcuu ucaguuggau guuugcuguc aucguccagu ucugucgccu 120
uguauuac 128
//
ID dre-mir-30e-2 standard; RNA; DRE; 80 BP.
XX
AC MI0001950;
XX
DE Danio rerio miR-30e-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628686; mir30e-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001807"
FT /product="dre-miR-30e-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 51..72
FT /accession="MIMAT0003402"
FT /product="dre-miR-30e-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 80 BP; 19 A; 18 C; 22 G; 0 T; 21 other;
uacgggcuac uguaaacauc cuugacugga agcuggugca caugauggag cuuucagucg 60
gauguuugca gcagccaacu 80
//
ID dre-mir-92a-1 standard; RNA; DRE; 85 BP.
XX
AC MI0001951;
XX
DE Danio rerio miR-92a-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628905; mir92a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0031953"
FT /product="dre-miR-92a-5p"
FT /evidence=not_experimental
FT miRNA 54..75
FT /accession="MIMAT0001808"
FT /product="dre-miR-92a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 85 BP; 13 A; 15 C; 27 G; 0 T; 30 other;
uggucccuuu cugcgcaggu ugggauuggu agcaaugcug uguguuuuga agguauugca 60
cuugucccgg ccuguaaagg auugu 85
//
ID dre-mir-92a-2 standard; RNA; DRE; 95 BP.
XX
AC MI0001952;
XX
DE Danio rerio miR-92a-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628971; mir92a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0031954"
FT /product="dre-miR-92a-2-5p"
FT /evidence=not_experimental
FT miRNA 55..76
FT /accession="MIMAT0001808"
FT /product="dre-miR-92a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 95 BP; 18 A; 22 C; 28 G; 0 T; 27 other;
acagcauccc uuucuuugca gguugggauc ggccgcaaug cucugugcug gaaguauugc 60
acuugucccg gccugugaag agcaugggaa auugu 95
//
ID dre-mir-92b standard; RNA; DRE; 82 BP.
XX
AC MI0001953;
XX
DE Danio rerio miR-92b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628687; mir92b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0031955"
FT /product="dre-miR-92b-5p"
FT /evidence=not_experimental
FT miRNA 56..77
FT /accession="MIMAT0001809"
FT /product="dre-miR-92b-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 82 BP; 12 A; 24 C; 24 G; 0 T; 22 other;
uccuacgggc agggaggugu gggauguugu gcaguguugu ucaaucuccc gccaauauug 60
cacucguccc ggccucccug ac 82
//
ID dre-mir-93 standard; RNA; DRE; 74 BP.
XX
AC MI0001954;
XX
DE Danio rerio miR-93 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628688; mir93.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0001810"
FT /product="dre-miR-93"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 74 BP; 17 A; 15 C; 19 G; 0 T; 23 other;
guguguguua aaagugcugu uugugcaggu aguguguuuc cucuacugua ggagcagcac 60
uucacaacac acac 74
//
ID dre-mir-96 standard; RNA; DRE; 125 BP.
XX
AC MI0001955;
XX
DE Danio rerio miR-96 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628689; mir96.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0001811"
FT /product="dre-miR-96-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 66..87
FT /accession="MIMAT0031956"
FT /product="dre-miR-96-3p"
FT /evidence=not_experimental
XX
SQ Sequence 125 BP; 35 A; 24 C; 24 G; 0 T; 42 other;
gcugggcgcu cuucuuugcc uguuuuggca cuagcacauu uuugcuuuuu uauauauacc 60
uugagcaauu auguguagug ccaauauggg acaagacaga caugcuacuu aaaaaaaaaa 120
ucagc 125
//
ID dre-mir-99-1 standard; RNA; DRE; 84 BP.
XX
AC MI0001956;
XX
DE Danio rerio miR-99-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628690; mir99-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001812"
FT /product="dre-miR-99"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 84 BP; 16 A; 19 C; 20 G; 0 T; 29 other;
gccacuuguc auuaacccgu agauccgauc uugugauaag uuugauggca caagcucgau 60
ucuauggguc ucugucucug uggu 84
//
ID dre-mir-99-2 standard; RNA; DRE; 80 BP.
XX
AC MI0001957;
XX
DE Danio rerio miR-99-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033620; mirn99-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0001812"
FT /product="dre-miR-99"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 80 BP; 16 A; 23 C; 19 G; 0 T; 22 other;
cacuugucac aaacccguag auccgaucuu guggcguaau cggcaaccca agcucgauuc 60
ugugggucuc ugucacugug 80
//
ID dre-mir-100-1 standard; RNA; DRE; 96 BP.
XX
AC MI0001958;
XX
DE Danio rerio miR-100-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628906; mir100-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0001813"
FT /product="dre-miR-100-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 59..80
FT /accession="MIMAT0031957"
FT /product="dre-miR-100-3p"
FT /evidence=not_experimental
XX
SQ Sequence 96 BP; 22 A; 25 C; 23 G; 0 T; 26 other;
gaagagaccu gccugcugac acaaacccgu agauccgaac uuguggugac uguccacaca 60
agcuuguauc uauagguauc ugucugugug gccuuc 96
//
ID dre-mir-100-2 standard; RNA; DRE; 75 BP.
XX
AC MI0001959;
XX
DE Danio rerio miR-100-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628821; mir100-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001813"
FT /product="dre-miR-100-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 46..67
FT /accession="MIMAT0031958"
FT /product="dre-miR-100-2-3p"
FT /evidence=not_experimental
XX
SQ Sequence 75 BP; 15 A; 19 C; 20 G; 0 T; 21 other;
agcugccaca aacccguaga uccgaacuug uggugucucu gugcacaagc ucgugucuau 60
agguaugugu cugcg 75
//
ID dre-mir-101a standard; RNA; DRE; 81 BP.
XX
AC MI0001960;
XX
DE Danio rerio miR-101a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628965; mir101a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..71
FT /accession="MIMAT0001814"
FT /product="dre-miR-101a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 81 BP; 18 A; 18 C; 22 G; 0 T; 23 other;
ggcugcccug guucaguuau cacagugcug augcugucca ucuuaaaggu acaguacugu 60
gauaacugaa ggauggcugc c 81
//
ID dre-mir-101b standard; RNA; DRE; 112 BP.
XX
AC MI0001961;
XX
DE Danio rerio miR-101b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033624; mir101b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 64..85
FT /accession="MIMAT0001815"
FT /product="dre-miR-101b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 112 BP; 27 A; 24 C; 27 G; 0 T; 34 other;
gcuccuccgu caugaauugu ccauuuucag uuaucauggu accggugcug ugugccuguc 60
aaguacagua cuaugauaac ugaagauuga cggugccaaa caucagugga gu 112
//
ID dre-mir-107a standard; RNA; DRE; 89 BP.
XX
AC MI0001963;
XX
DE Danio rerio miR-107 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628693; mir107.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0031959"
FT /product="dre-miR-107a-5p"
FT /evidence=not_experimental
FT miRNA 51..73
FT /accession="MIMAT0001817"
FT /product="dre-miR-107a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000114"
XX
SQ Sequence 89 BP; 20 A; 20 C; 23 G; 0 T; 26 other;
ucugugugcu cugagcuucu uuacaguguu gucuuguggc auggagauca agcagcauug 60
uacagggcua ucacagcaca cugaacagc 89
//
ID dre-mir-124-2 standard; RNA; DRE; 83 BP.
XX
AC MI0001967;
XX
DE Danio rerio miR-124-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628694; mir124-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0031960"
FT /product="dre-miR-124-5p"
FT /evidence=not_experimental
FT miRNA 52..73
FT /accession="MIMAT0001819"
FT /product="dre-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 83 BP; 21 A; 19 C; 20 G; 0 T; 23 other;
ccugcuuuuc uucguguuca cagcggaccu ugauuuaaau guccauacaa uuaaggcacg 60
cggugaaugc caagagagau ggc 83
//
ID dre-mir-124-3 standard; RNA; DRE; 117 BP.
XX
AC MI0001968;
XX
DE Danio rerio miR-124-3 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628695; mir124-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..52
FT /accession="MIMAT0031960"
FT /product="dre-miR-124-5p"
FT /evidence=not_experimental
FT miRNA 68..89
FT /accession="MIMAT0001819"
FT /product="dre-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 117 BP; 26 A; 28 C; 31 G; 0 T; 32 other;
ggcucugugg gauuucagac ucuggcuuuc cguguucaca gcggaccuug auuuaauguc 60
uuacaauuaa ggcacgcggu gaaugccaag agcggagccu uuuaacauca gcaggcc 117
//
ID dre-mir-124-4 standard; RNA; DRE; 83 BP.
XX
AC MI0001969;
XX
DE Danio rerio miR-124-4 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033631; mirn124-4.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0031961"
FT /product="dre-miR-124-4-5p"
FT /evidence=not_experimental
FT miRNA 52..73
FT /accession="MIMAT0001819"
FT /product="dre-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 83 BP; 22 A; 15 C; 20 G; 0 T; 26 other;
gguuuuugcu cuuuguguuc acaguggacc uugauuuaau uucaauacaa uuaaggcacg 60
cggugaaugc caagagagaa gcc 83
//
ID dre-mir-124-5 standard; RNA; DRE; 129 BP.
XX
AC MI0001970;
XX
DE Danio rerio miR-124-5 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628858; mir124-5.
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..60
FT /accession="MIMAT0031960"
FT /product="dre-miR-124-5p"
FT /evidence=not_experimental
FT miRNA 77..98
FT /accession="MIMAT0001819"
FT /product="dre-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 129 BP; 27 A; 30 C; 33 G; 0 T; 39 other;
ggguuuugcu cgugcguucu uuuugaguuc ucgcucugcg uguucacagc ggaccuugau 60
uuaaugucca uacaauuaag gcacgcggug aaugccaaga gaagaaucuc uccagcaacg 120
aguuugcgc 129
//
ID dre-mir-124-6 standard; RNA; DRE; 113 BP.
XX
AC MI0001971;
XX
DE Danio rerio miR-124-6 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628908; mir124-6.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..49
FT /accession="MIMAT0031962"
FT /product="dre-miR-124-6-5p"
FT /evidence=not_experimental
FT miRNA 66..87
FT /accession="MIMAT0001819"
FT /product="dre-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 113 BP; 31 A; 29 C; 31 G; 0 T; 22 other;
ggguggugac acaggcccgc cacucugcgu guucacggcg gaccuugauu uaauauccau 60
acaauuaagg cacgcgguga augccaagag aggggucuua aaacgacaaa ccc 113
//
ID dre-mir-125a-1 standard; RNA; DRE; 83 BP.
XX
AC MI0001972;
XX
DE Danio rerio miR-125a-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628696; mir125a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001820"
FT /product="dre-miR-125a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 83 BP; 18 A; 21 C; 23 G; 0 T; 21 other;
guaugucucu uugucccuga gacccuuaac cugugagguc aaacuagguc acaggugagg 60
uccucaggaa cagggcugca ugc 83
//
ID dre-mir-125a-2 standard; RNA; DRE; 107 BP.
XX
AC MI0001973;
XX
DE Danio rerio miR-125a-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628823; mir125a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..50
FT /accession="MIMAT0001820"
FT /product="dre-miR-125a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 107 BP; 24 A; 25 C; 28 G; 0 T; 30 other;
gaucagucca aaucgaugua ugucuguguc ccugagaccc uuaaccugug augucuucca 60
aggucacagg ugagguccuu gggaacacgg cuguauauga ugacguc 107
//
ID dre-mir-125b-1 standard; RNA; DRE; 145 BP.
XX
AC MI0001975;
XX
DE Danio rerio miR-125b-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628697; mir125b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 46..67
FT /accession="MIMAT0001821"
FT /product="dre-miR-125b-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 86..107
FT /accession="MIMAT0031963"
FT /product="dre-miR-125b-1-3p"
FT /evidence=not_experimental
XX
SQ Sequence 145 BP; 22 A; 35 C; 45 G; 0 T; 43 other;
uucuguugca gguuggcggu uggucugcaa augugccucu cacaaucccu gagacccuaa 60
cuugugacgu uuuccuguua ugugcacggg uuagguucuu gggagcugag aggggugcuc 120
ugucaucagc ccgccggcgu cggaa 145
//
ID dre-mir-125b-2 standard; RNA; DRE; 86 BP.
XX
AC MI0001976;
XX
DE Danio rerio miR-125b-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628698; mir125b-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001821"
FT /product="dre-miR-125b-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 55..75
FT /accession="MIMAT0031964"
FT /product="dre-miR-125b-2-3p"
FT /evidence=not_experimental
XX
SQ Sequence 86 BP; 11 A; 26 C; 25 G; 0 T; 24 other;
gugccccucu ccuucccuga gacccuaacu ugugacguuc ugcuucgaug uccacggguu 60
ggguucucgg gagcugugag aggcac 86
//
ID dre-mir-125b-3 standard; RNA; DRE; 115 BP.
XX
AC MI0001977;
XX
DE Danio rerio miR-125b-3 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628909; mir125b-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..52
FT /accession="MIMAT0001821"
FT /product="dre-miR-125b-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 72..93
FT /accession="MIMAT0031965"
FT /product="dre-miR-125b-3-3p"
FT /evidence=not_experimental
XX
SQ Sequence 115 BP; 24 A; 34 C; 32 G; 0 T; 25 other;
cccgugcggc caccgcugca cuccuccugg ucccugagac ccuaacuugu gagcuuugug 60
ugcuaaaaau cacagguuaa gcucuuggga ccugggcaga gggcaaaagc acugg 115
//
ID dre-mir-125c standard; RNA; DRE; 85 BP.
XX
AC MI0001978;
XX
DE Danio rerio miR-125c stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628859; mir125c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001822"
FT /product="dre-miR-125c-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 53..74
FT /accession="MIMAT0031966"
FT /product="dre-miR-125c-3p"
FT /evidence=not_experimental
XX
SQ Sequence 85 BP; 16 A; 23 C; 25 G; 0 T; 21 other;
gcucuccucc uguucccuga gacccuaacu cgugaggucu uuuuccaaaa ucacggguca 60
ggagcuuggg agacaggugg agggc 85
//
ID dre-mir-126a standard; RNA; DRE; 101 BP.
XX
AC MI0001979;
XX
DE Danio rerio miR-126a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
RN [2]
RX PUBMED; 15919954.
RA Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de
RA Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH;
RT "MicroRNA expression in zebrafish embryonic development";
RL Science. 309:310-311(2005).
XX
DR ENTREZGENE; 100628699; mir126a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..46
FT /accession="MIMAT0003157"
FT /product="dre-miR-126a-5p"
FT /evidence=experimental
FT /experiment="array [2]"
FT miRNA 64..84
FT /accession="MIMAT0001823"
FT /product="dre-miR-126a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 101 BP; 24 A; 23 C; 23 G; 0 T; 31 other;
gagccauuuu aacugcuuca caguccauua uuacuuuugg uacgcgcuag gccagacuca 60
aacucguacc gugaguaaua augcacugug gcaguggguu u 101
//
ID dre-mir-128-1 standard; RNA; DRE; 98 BP.
XX
AC MI0001980;
XX
DE Danio rerio miR-128-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033641; mirn128-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0031967"
FT /product="dre-miR-128-5p"
FT /evidence=not_experimental
FT miRNA 60..81
FT /accession="MIMAT0001824"
FT /product="dre-miR-128-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 98 BP; 19 A; 23 C; 31 G; 0 T; 25 other;
uggaggagga gugcugggag acggggccgu ggcacuguau gagauucaug uaggcuuucu 60
cacagugaac cggucucuuu uuccagcccu cacugaca 98
//
ID dre-mir-129-2 standard; RNA; DRE; 87 BP.
XX
AC MI0001982;
XX
DE Danio rerio miR-129-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
RN [2]
RX PUBMED; 15919954.
RA Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de
RA Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH;
RT "MicroRNA expression in zebrafish embryonic development";
RL Science. 309:310-311(2005).
XX
DR ENTREZGENE; 100628700; mir129-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001825"
FT /product="dre-miR-129-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 55..76
FT /accession="MIMAT0003158"
FT /product="dre-miR-129-3p"
FT /evidence=experimental
FT /experiment="array [2]"
XX
SQ Sequence 87 BP; 18 A; 22 C; 21 G; 0 T; 26 other;
gucuuucacg aaucuuuuug cggucugggc uugcuguucu caacuaucaa ugggaagccc 60
uuaccccaaa aagcauuugc ggagggc 87
//
ID dre-mir-129-1 standard; RNA; DRE; 90 BP.
XX
AC MI0001983;
XX
DE Danio rerio miR-129-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628701; mir129-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001825"
FT /product="dre-miR-129-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 57..77
FT /accession="MIMAT0031968"
FT /product="dre-miR-129-1-3p"
FT /evidence=not_experimental
XX
SQ Sequence 90 BP; 18 A; 24 C; 22 G; 0 T; 26 other;
guccuuuuca ggucuuuuug cggucugggc uugcuguucc uugaaccagu agccaggaag 60
cccuuacccc aaaaaguauc ugcagaggac 90
//
ID dre-mir-130a standard; RNA; DRE; 85 BP.
XX
AC MI0001984;
XX
DE Danio rerio miR-130a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033645; mirn130a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..75
FT /accession="MIMAT0001826"
FT /product="dre-miR-130a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 85 BP; 23 A; 17 C; 19 G; 0 T; 26 other;
ugucugucca gugccccuuu uauauuguac uacugauaac ccaguuauua aagcagugca 60
auguuaaaag ggcauuggcc aggga 85
//
ID dre-mir-130b standard; RNA; DRE; 84 BP.
XX
AC MI0001986;
XX
DE Danio rerio miR-130b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628702; mir130b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0001827"
FT /product="dre-miR-130b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 84 BP; 20 A; 22 C; 21 G; 0 T; 21 other;
cuguugccug acacucuuuc ccuguugcac uacuguggga gcugcagcaa agcagugcaa 60
uaaugaaagg gcaucagucc acug 84
//
ID dre-mir-130c-1 standard; RNA; DRE; 141 BP.
XX
AC MI0001987;
XX
DE Danio rerio miR-130c-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628860; mir130c-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 43..64
FT /accession="MIMAT0031969"
FT /product="dre-miR-130c-5p"
FT /evidence=not_experimental
FT miRNA 80..101
FT /accession="MIMAT0001828"
FT /product="dre-miR-130c-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 141 BP; 33 A; 33 C; 32 G; 0 T; 43 other;
gggagagguc uguacgguga uauugaccau guuuugucca uugcccuuuu ucuguuguac 60
uacuggccaa ucagaagagc agugcaauau uaaaagggca uuggcugaua gaacagaguc 120
cuucaccucu cacccucucc u 141
//
ID dre-mir-130c-2 standard; RNA; DRE; 81 BP.
XX
AC MI0001988;
XX
DE Danio rerio miR-130c-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628824; mir130c-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0031969"
FT /product="dre-miR-130c-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001828"
FT /product="dre-miR-130c-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 81 BP; 20 A; 15 C; 21 G; 0 T; 25 other;
uuguugacca gggcccuuuu ucuguuguac uacugugcag ucagaugagc agugcaauau 60
uaaaagggca uuggcugaca a 81
//
ID dre-mir-132-1 standard; RNA; DRE; 85 BP.
XX
AC MI0001989;
XX
DE Danio rerio miR-132-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628703; mir132-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0003403"
FT /product="dre-miR-132-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 54..75
FT /accession="MIMAT0001829"
FT /product="dre-miR-132-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 85 BP; 20 A; 17 C; 24 G; 0 T; 24 other;
gucuccaugg cgaccguggc auuagauugu uacuguagga acagaauuuu ugguaacagu 60
cuacagccau ggucgcuagu gggca 85
//
ID dre-mir-132-2 standard; RNA; DRE; 119 BP.
XX
AC MI0001991;
XX
DE Danio rerio miR-132-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628704; mir132-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 66..87
FT /accession="MIMAT0001829"
FT /product="dre-miR-132-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 119 BP; 21 A; 31 C; 34 G; 0 T; 33 other;
ucccuuccuc ugcugucucc augcugaccg uggcuuuaga uuguuacugu agcguuggca 60
cgugguaaca gucuacagcc auggucgcca aggggcaggu guuacagcga cuacuggga 119
//
ID dre-mir-133b standard; RNA; DRE; 84 BP.
XX
AC MI0001994;
XX
DE Danio rerio miR-133b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628706; mir133b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0003405"
FT /product="dre-miR-133b-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 53..74
FT /accession="MIMAT0001831"
FT /product="dre-miR-133b-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 84 BP; 14 A; 23 C; 24 G; 0 T; 23 other;
cacgccuugc uguggcuggu caaauggaac caagucaggu guuucugcga gguuuggucc 60
ccuucaacca gcuacugcgu cgug 84
//
ID dre-mir-133c standard; RNA; DRE; 91 BP.
XX
AC MI0001995;
XX
DE Danio rerio miR-133c stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628885; mir133c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0031971"
FT /product="dre-miR-133c-5p"
FT /evidence=not_experimental
FT miRNA 55..76
FT /accession="MIMAT0001832"
FT /product="dre-miR-133c-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 91 BP; 21 A; 21 C; 26 G; 0 T; 23 other;
gaaacacggc uuaguugcug guaaaacgga accaagucgg guguuugcga gagguuuggu 60
cccuuucaac cagcuacugc gccgugaauu c 91
//
ID dre-mir-137-1 standard; RNA; DRE; 85 BP.
XX
AC MI0002000;
XX
DE Danio rerio miR-137-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628708; mir137-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0031972"
FT /product="dre-miR-137-5p"
FT /evidence=not_experimental
FT miRNA 51..72
FT /accession="MIMAT0001834"
FT /product="dre-miR-137-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 85 BP; 16 A; 14 C; 27 G; 0 T; 28 other;
ggcucucuuc ggugacgggu auucuugggu ggauaauacg gcucucguug uuauugcuua 60
agaauacgcg uaguugagga gaguc 85
//
ID dre-mir-137-2 standard; RNA; DRE; 128 BP.
XX
AC MI0002001;
XX
DE Danio rerio miR-137-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628709; mir137-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..62
FT /accession="MIMAT0031972"
FT /product="dre-miR-137-5p"
FT /evidence=not_experimental
FT miRNA 75..96
FT /accession="MIMAT0001834"
FT /product="dre-miR-137-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 128 BP; 25 A; 24 C; 39 G; 0 T; 40 other;
guucuguugu uucccucuau aaaggacucu cuucggugac ggguauucuu ggguggauaa 60
uacggcucuc guuguuauug cuuaagaaua cgcguagucg aggagaguca ugucggcggc 120
gagagagc 128
//
ID dre-mir-138-1 standard; RNA; DRE; 87 BP.
XX
AC MI0002002;
XX
DE Danio rerio miR-138-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628825; mir138.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0001835"
FT /product="dre-miR-138-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 58..78
FT /accession="MIMAT0031973"
FT /product="dre-miR-138-3p"
FT /evidence=not_experimental
XX
SQ Sequence 87 BP; 20 A; 24 C; 24 G; 0 T; 19 other;
ugugugcugc agcugguguu gugaaucagg ccgaugucac acgucagcga uaacccggcu 60
auuucacaac accagggugg caccaca 87
//
ID dre-mir-140 standard; RNA; DRE; 105 BP.
XX
AC MI0002003;
XX
DE Danio rerio miR-140 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
RN [2]
RX PUBMED; 15919954.
RA Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de
RA Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH;
RT "MicroRNA expression in zebrafish embryonic development";
RL Science. 309:310-311(2005).
XX
DR ENTREZGENE; 100033662; mirn140.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0001836"
FT /product="dre-miR-140-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 62..84
FT /accession="MIMAT0003159"
FT /product="dre-miR-140-3p"
FT /evidence=experimental
FT /experiment="array [2], in-situ [2]"
XX
SQ Sequence 105 BP; 16 A; 24 C; 32 G; 0 T; 33 other;
guguuugucu ccuguguccc gucagugguu uuacccuaug guagguuacg ucaugcuguu 60
cuaccacagg guagaaccac ggacgggaug ucuggaggug ucugc 105
//
ID dre-mir-141 standard; RNA; DRE; 83 BP.
XX
AC MI0002004;
XX
DE Danio rerio miR-141 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033663; mirn141.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0031974"
FT /product="dre-miR-141-5p"
FT /evidence=not_experimental
FT miRNA 51..72
FT /accession="MIMAT0001837"
FT /product="dre-miR-141-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 83 BP; 16 A; 20 C; 20 G; 0 T; 27 other;
gucucuaggg uacaucuuac cugacagugc uuggcuguuc acugauguuc uaacacuguc 60
ugguaacgau gcacucuggu gac 83
//
ID dre-mir-142a standard; RNA; DRE; 91 BP.
XX
AC MI0002005;
XX
DE Danio rerio miR-142a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
RN [2]
RX PUBMED; 15919954.
RA Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de
RA Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH;
RT "MicroRNA expression in zebrafish embryonic development";
RL Science. 309:310-311(2005).
XX
DR ENTREZGENE; 100628913; mir142a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..38
FT /accession="MIMAT0001838"
FT /product="dre-miR-142a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 55..77
FT /accession="MIMAT0003160"
FT /product="dre-miR-142a-3p"
FT /evidence=experimental
FT /experiment="array [2], in-situ [2]"
XX
SQ Sequence 91 BP; 25 A; 21 C; 19 G; 0 T; 26 other;
cguacagugc agucauccau aaaguagaaa gcacuacuaa accccucgcc acaguguagu 60
guuuccuacu uuauggauga guguacuguu g 91
//
ID dre-mir-142b standard; RNA; DRE; 86 BP.
XX
AC MI0002006;
XX
DE Danio rerio miR-142b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628710; mir142b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0001839"
FT /product="dre-miR-142b-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 86 BP; 25 A; 18 C; 16 G; 0 T; 27 other;
acagugcagu cacucauaaa guagacagca cuacuaaacu ucucuacaca guguaguguu 60
uccuacuuua uggaugagug uacugu 86
//
ID dre-mir-144 standard; RNA; DRE; 89 BP.
XX
AC MI0002009;
XX
DE Danio rerio miR-144 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628712; mir144.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0031975"
FT /product="dre-miR-144-5p"
FT /evidence=not_experimental
FT miRNA 51..70
FT /accession="MIMAT0001841"
FT /product="dre-miR-144-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 89 BP; 27 A; 17 C; 20 G; 0 T; 25 other;
gcucucuaga caggauauca ucguauacug uaaguucauu auugagacac uacaguauag 60
augauguacu auccaggggg ucaacgagc 89
//
ID dre-mir-145 standard; RNA; DRE; 113 BP.
XX
AC MI0002010;
XX
DE Danio rerio miR-145 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033669; mir145.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..51
FT /accession="MIMAT0001842"
FT /product="dre-miR-145-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 69..90
FT /accession="MIMAT0031976"
FT /product="dre-miR-145-3p"
FT /evidence=not_experimental
XX
SQ Sequence 113 BP; 21 A; 28 C; 31 G; 0 T; 33 other;
ucagucuuca ucauuuccuc auccccgggg uccaguuuuc ccaggaaucc cuugggcaau 60
cgaaaggggg auuccuggaa auacuguucu ugggguuggg gcuggacuac uga 113
//
ID dre-mir-146a standard; RNA; DRE; 114 BP.
XX
AC MI0002012;
XX
DE Danio rerio miR-146a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033670; mir146a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..47
FT /accession="MIMAT0001843"
FT /product="dre-miR-146a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 114 BP; 27 A; 21 C; 23 G; 0 T; 43 other;
gaguuuguuu ugagcacuuu ucccugagaa cugaauucca uagauggugu ucaugaaaag 60
uucaucuaug ggcucaguuc uucuggcaau cuguuuaaug ucugcuacaa auuc 114
//
ID dre-mir-146b standard; RNA; DRE; 80 BP.
XX
AC MI0002013;
XX
DE Danio rerio miR-146b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628713; mir146b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0001844"
FT /product="dre-miR-146b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 80 BP; 16 A; 16 C; 20 G; 0 T; 28 other;
gcucuuggcu uugagaacug aauuccaagg gugucugcuu uauauucagc ccacggaguu 60
caguucuuaa guuuggaugc 80
//
ID dre-mir-148 standard; RNA; DRE; 79 BP.
XX
AC MI0002015;
XX
DE Danio rerio miR-148 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628863; mir148.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..70
FT /accession="MIMAT0001845"
FT /product="dre-miR-148"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 79 BP; 19 A; 15 C; 17 G; 0 T; 28 other;
cuuuccaagu aaaguucugu gauacacucc gacucugaau guuugcaguc agugcauuac 60
agaacuuugu uuugggagu 79
//
ID dre-mir-152 standard; RNA; DRE; 80 BP.
XX
AC MI0002017;
XX
DE Danio rerio miR-152 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628955; mir152.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..75
FT /accession="MIMAT0001847"
FT /product="dre-miR-152"
FT /evidence=not_experimental
FT /similarity="MI0000174"
XX
SQ Sequence 80 BP; 18 A; 19 C; 20 G; 0 T; 23 other;
cuguucaccu ggcucaaguu cugugauaca cucagacuuu gaaucagugg uagucagugc 60
augacagaac uuuggcccgg 80
//
ID dre-mir-153b standard; RNA; DRE; 148 BP.
XX
AC MI0002019;
XX
DE Danio rerio miR-153b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628915; mir153b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 43..64
FT /accession="MIMAT0031977"
FT /product="dre-miR-153b-5p"
FT /evidence=not_experimental
FT miRNA 81..102
FT /accession="MIMAT0001848"
FT /product="dre-miR-153b-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 148 BP; 36 A; 32 C; 43 G; 0 T; 37 other;
gagcgaugga gcgcgguagc gagguauugc acagcugucu gugucauuuu ugugguuugc 60
agcuaguagu cugguuccag uugcauaguc acaaaaauga gcacagacag augugacugc 120
agcaacgcug augaaacgcu ccaucgcc 148
//
ID dre-mir-153a standard; RNA; DRE; 81 BP.
XX
AC MI0002021;
XX
DE Danio rerio miR-153a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628716; mir153a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031978"
FT /product="dre-miR-153a-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001849"
FT /product="dre-miR-153a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 81 BP; 21 A; 13 C; 20 G; 0 T; 27 other;
gguugccagu gucauuuuug ugauguugca gcuaguuaua ugagcccagu ugcauaguca 60
caaaagugau cauuggaaac u 81
//
ID dre-mir-153c standard; RNA; DRE; 151 BP.
XX
AC MI0002022;
XX
DE Danio rerio miR-153c stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628717; mir153c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 43..64
FT /accession="MIMAT0031979"
FT /product="dre-miR-153c-5p"
FT /evidence=not_experimental
FT miRNA 81..102
FT /accession="MIMAT0001850"
FT /product="dre-miR-153c-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 151 BP; 35 A; 32 C; 43 G; 0 T; 41 other;
gauggagauc aguagguccc uggacguagc acaccuccca gugucauuuu ugugauuugc 60
agcuaguagu cuggguccag uugcauaguc acaaaaauga ucauugguag gugugagugc 120
agcaggagug aggcuuaccg gauccuccau c 151
//
ID dre-mir-181c standard; RNA; DRE; 78 BP.
XX
AC MI0002024;
XX
DE Danio rerio miR-181c stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628718; mir181c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0001852"
FT /product="dre-miR-181c-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 48..69
FT /accession="MIMAT0031980"
FT /product="dre-miR-181c-3p"
FT /evidence=not_experimental
XX
SQ Sequence 78 BP; 15 A; 19 C; 20 G; 0 T; 24 other;
ggguccugau ucacauucau ugcugucggu ggguuuuauc ucuucgacuc gccggacaau 60
gaaugagaac uacggcuc 78
//
ID dre-mir-184-1 standard; RNA; DRE; 87 BP.
XX
AC MI0002026;
XX
DE Danio rerio miR-184 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628827; mir184.
XX
FH Key Location/Qualifiers
FH
FT miRNA 55..76
FT /accession="MIMAT0001853"
FT /product="dre-miR-184"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 87 BP; 20 A; 23 C; 19 G; 0 T; 25 other;
gucgaacacg ucuccuuauc acuuuuccag cccagcuauc cauuuaguau ucguuggacg 60
gagaacugau aagggcaugu gcccgau 87
//
ID dre-mir-193a-1 standard; RNA; DRE; 99 BP.
XX
AC MI0002029;
XX
DE Danio rerio miR-193a-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628720; mir193a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0031981"
FT /product="dre-miR-193a-5p"
FT /evidence=not_experimental
FT miRNA 61..82
FT /accession="MIMAT0001856"
FT /product="dre-miR-193a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 99 BP; 23 A; 18 C; 25 G; 0 T; 33 other;
gacauuaaug uguuagaggu ugggucuuug cgggcaaggu gaguaguuaa auuuacucuc 60
aacuggccua caaaguccca guuucuggcu cauguuauc 99
//
ID dre-mir-193a-2 standard; RNA; DRE; 98 BP.
XX
AC MI0002030;
XX
DE Danio rerio miR-193a-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628917; mir193a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0031981"
FT /product="dre-miR-193a-5p"
FT /evidence=not_experimental
FT miRNA 55..76
FT /accession="MIMAT0001856"
FT /product="dre-miR-193a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 98 BP; 18 A; 24 C; 27 G; 0 T; 29 other;
gagagugugu cagaggcugg gucuuugcgg gcaaggugag uuuuccuuuc auucaacugg 60
ccuacaaagu cccaguuuuc ggcccaugug accaucuc 98
//
ID dre-mir-193b standard; RNA; DRE; 85 BP.
XX
AC MI0002032;
XX
DE Danio rerio miR-193b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628828; mir193b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0031982"
FT /product="dre-miR-193b-5p"
FT /evidence=not_experimental
FT miRNA 52..73
FT /accession="MIMAT0001857"
FT /product="dre-miR-193b-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 85 BP; 17 A; 21 C; 25 G; 0 T; 22 other;
gugauuucag ugacgggacu uugggggcga gaugaguauu gaucucuauc caacuggccc 60
gcaaaguccc gcuucuggga cucac 85
//
ID dre-mir-196a-2 standard; RNA; DRE; 76 BP.
XX
AC MI0002035;
XX
DE Danio rerio miR-196a-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033690; mirn196a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001276"
FT /product="dre-miR-196a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 47..68
FT /accession="MIMAT0031983"
FT /product="dre-miR-196a-3p"
FT /evidence=not_experimental
XX
SQ Sequence 76 BP; 18 A; 14 C; 17 G; 0 T; 27 other;
ucgagugguu uagguaguuu cauguuguug ggauuacauu caaacucugc aacgugaaac 60
ugucuuaauu gcccca 76
//
ID dre-mir-196b standard; RNA; DRE; 79 BP.
XX
AC MI0002036;
XX
DE Danio rerio miR-196b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628865; mir196b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001860"
FT /product="dre-miR-196b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 79 BP; 18 A; 14 C; 20 G; 0 T; 27 other;
gucugugauu uagguaguuu caaguuguug ggcuggacgu uuaauuucac aggaaccuga 60
aacugccuga auugcucca 79
//
ID dre-mir-200a standard; RNA; DRE; 86 BP.
XX
AC MI0002037;
XX
DE Danio rerio miR-200a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628918; mir200a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0031984"
FT /product="dre-miR-200a-5p"
FT /evidence=not_experimental
FT miRNA 52..73
FT /accession="MIMAT0001861"
FT /product="dre-miR-200a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 86 BP; 18 A; 19 C; 22 G; 0 T; 27 other;
ggcacuuagc agccaucuua ccggacagug cuggacugua uaacuguuuu cuaacacugu 60
cugguaacga uguuuguugg gugacc 86
//
ID dre-mir-200b standard; RNA; DRE; 82 BP.
XX
AC MI0002038;
XX
DE Danio rerio miR-200b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628724; mir200b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0031985"
FT /product="dre-miR-200b-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001862"
FT /product="dre-miR-200b-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 82 BP; 17 A; 17 C; 18 G; 0 T; 30 other;
gguagucguc uccaucuuac gaggcagcau uggauuucau uacuuuuucu aauacugccu 60
gguaaugaug augauugcug cc 82
//
ID dre-mir-200c standard; RNA; DRE; 85 BP.
XX
AC MI0002039;
XX
DE Danio rerio miR-200c stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628829; mir200c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0031986"
FT /product="dre-miR-200c-5p"
FT /evidence=not_experimental
FT miRNA 51..72
FT /accession="MIMAT0001863"
FT /product="dre-miR-200c-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 85 BP; 19 A; 17 C; 19 G; 0 T; 30 other;
uggaugccug gcuccaucuu acaaggcagu uuuggauguu auaucuucuc uaauacugcc 60
ugguaaugau gcagaugguc aucua 85
//
ID dre-mir-202 standard; RNA; DRE; 76 BP.
XX
AC MI0002040;
XX
DE Danio rerio miR-202 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628725; mir202.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0003406"
FT /product="dre-miR-202-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 47..68
FT /accession="MIMAT0001864"
FT /product="dre-miR-202-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 76 BP; 17 A; 15 C; 20 G; 0 T; 24 other;
cuguuccuuu uuccuaugca uauaccucuu ugacaugcug cuuuaaagag gcauagggca 60
ugggaaaaug gggcgg 76
//
ID dre-mir-203b standard; RNA; DRE; 85 BP.
XX
AC MI0002041;
XX
DE Danio rerio miR-203b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628726; mir203b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0003407"
FT /product="dre-miR-203b-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 51..72
FT /accession="MIMAT0001865"
FT /product="dre-miR-203b-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 85 BP; 21 A; 17 C; 20 G; 0 T; 27 other;
uccucuuugg ccgagugguu cucaacaguu caacaguucu uuugaugauu gugaaauguu 60
caggaccacu ugaucagacg aagga 85
//
ID dre-mir-204-2 standard; RNA; DRE; 124 BP.
XX
AC MI0002042;
XX
DE Danio rerio miR-204-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628919; mir204-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 37..58
FT /accession="MIMAT0001279"
FT /product="dre-miR-204-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 74..94
FT /accession="MIMAT0031987"
FT /product="dre-miR-204-2-3p"
FT /evidence=not_experimental
XX
SQ Sequence 124 BP; 24 A; 30 C; 33 G; 0 T; 37 other;
guguugcucu agugaccagu uugugaccuc cuggguuucc cuuugucauc cuaugccugc 60
aguuccugau gaggcuggga cagcaaaggg agguucagau gucgaccugu acuacaguca 120
auac 124
//
ID dre-mir-206-1 standard; RNA; DRE; 99 BP.
XX
AC MI0002045;
XX
DE Danio rerio miR-206-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628866; mir206-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..43
FT /accession="MIMAT0031988"
FT /product="dre-miR-206-5p"
FT /evidence=not_experimental
FT miRNA 59..80
FT /accession="MIMAT0001866"
FT /product="dre-miR-206-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 99 BP; 25 A; 14 C; 26 G; 0 T; 34 other;
gaauguugcc ucuugugaag acaugcuucc uuauaugccc auauuaaugc ucaaguuaug 60
gaauguaagg aagugugugg uuucaggggg aaauuuguc 99
//
ID dre-mir-219-3 standard; RNA; DRE; 150 BP.
XX
AC MI0002054;
XX
DE Danio rerio miR-219-3 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628731; mir219-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..70
FT /accession="MIMAT0001286"
FT /product="dre-miR-219-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 87..109
FT /accession="MIMAT0031989"
FT /product="dre-miR-219-3p"
FT /evidence=not_experimental
XX
SQ Sequence 150 BP; 32 A; 32 C; 38 G; 0 T; 48 other;
cuucucuuuu aaguucaucu gucugguuug auacugacgg ucaggugcug auuguccaaa 60
cgcaauucuu gugcuugugu gaaacaggag uuguggaugg acaucacgcu ccugucuggu 120
ccucacaucu acaggauggg ccaaguaaag 150
//
ID dre-mir-301b standard; RNA; DRE; 81 BP.
XX
AC MI0002061;
XX
DE Danio rerio miR-301b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628733; mir301b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0031990"
FT /product="dre-miR-301b-5p"
FT /evidence=not_experimental
FT miRNA 49..70
FT /accession="MIMAT0001871"
FT /product="dre-miR-301b-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 81 BP; 20 A; 16 C; 17 G; 0 T; 28 other;
aaggucuguu gcuuugacga uguugcacua cugaaccauc uaaucaagca gugcaauagu 60
auugucauug cauucggcuu u 81
//
ID dre-mir-301c standard; RNA; DRE; 83 BP.
XX
AC MI0002062;
XX
DE Danio rerio miR-301c stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628734; mir301c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0031991"
FT /product="dre-miR-301c-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001872"
FT /product="dre-miR-301c-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 83 BP; 19 A; 20 C; 17 G; 0 T; 27 other;
ugaggucagc ugcucugacg auguugcacu acuguaccau ccauucuagc agugcaauag 60
uauugucaua gcauuuagcc ucu 83
//
ID dre-mir-338-1 standard; RNA; DRE; 85 BP.
XX
AC MI0002063;
XX
DE Danio rerio miR-338-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628956; mir338-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..73
FT /accession="MIMAT0001873"
FT /product="dre-miR-338"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 85 BP; 13 A; 25 C; 18 G; 0 T; 29 other;
gguuucuccc ugcaacaauc uccugaugcu gccugagugu uuuucuucca cuccagcauc 60
agugauuuug uugccggagg ucacc 85
//
ID dre-mir-338-2 standard; RNA; DRE; 124 BP.
XX
AC MI0002064;
XX
DE Danio rerio miR-338-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628922; mir338-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 71..92
FT /accession="MIMAT0001873"
FT /product="dre-miR-338"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 124 BP; 26 A; 20 C; 37 G; 0 T; 41 other;
gugugugugu guguuucugg ugccugcuga gaacaauauc cugaugcuga augagugugu 60
ugaaggaaac uccagcauca gugauuuugu ugccagagga gcacuuuggg cauccugugu 120
auau 124
//
ID dre-mir-363 standard; RNA; DRE; 127 BP.
XX
AC MI0002067;
XX
DE Danio rerio miR-363 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628736; mir363.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..51
FT /accession="MIMAT0031992"
FT /product="dre-miR-363-5p"
FT /evidence=not_experimental
FT miRNA 78..99
FT /accession="MIMAT0001874"
FT /product="dre-miR-363-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 127 BP; 34 A; 22 C; 25 G; 0 T; 46 other;
uaaaugcaaa uauuugucuu gcuguuuucg gguggaugac ucugcaauuu uauuagugau 60
ggaaaaacuu caauaaaaau ugcacgguau ccaucuguaa uccgcuggau uccauuaccu 120
gcguuug 127
//
ID dre-mir-365-2 standard; RNA; DRE; 98 BP.
XX
AC MI0002069;
XX
DE Danio rerio miR-365-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628832; mir365-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 58..79
FT /accession="MIMAT0001875"
FT /product="dre-miR-365"
FT /evidence=not_experimental
FT /similarity="MI0000768"
XX
SQ Sequence 98 BP; 29 A; 20 C; 20 G; 0 T; 29 other;
aggcagcaag aaaaaugagg gacuuuuagg ggcagcugug uuuuauuaac ccagucauaa 60
ugccccuaaa aauccuuauu gcucuugcaa uuuucagc 98
//
ID dre-mir-365-3 standard; RNA; DRE; 99 BP.
XX
AC MI0002070;
XX
DE Danio rerio miR-365-3 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628923; mir365-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 59..80
FT /accession="MIMAT0001875"
FT /product="dre-miR-365"
FT /evidence=not_experimental
FT /similarity="MI0000768"
XX
SQ Sequence 99 BP; 29 A; 22 C; 22 G; 0 T; 26 other;
aagucagcaa gaaaagugag ggacuuuuag gggcagcugu guuauacuga cccagucaua 60
augccccuaa aaauccuuau ugcucuugca gugcucaac 99
//
ID dre-mir-375-1 standard; RNA; DRE; 80 BP.
XX
AC MI0002072;
XX
DE Danio rerio miR-375-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033788; mirn375-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..70
FT /accession="MIMAT0001876"
FT /product="dre-miR-375"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 80 BP; 17 A; 19 C; 19 G; 0 T; 25 other;
ugcacuugcu uuacguugag ccacacgcac aauacaugug gauucaguuu uguucguucg 60
gcucgcguua agcaagugca 80
//
ID dre-mir-455-1 standard; RNA; DRE; 96 BP.
XX
AC MI0002077;
XX
DE Danio rerio miR-455-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100628833; mir455.
XX
CC The mir-455 precursor was predicted computationally and a mature product
CC verified in human by Northern blot [2]. The precise sequence termini of
CC the mature form were derived by cloning from human and rat samples
CC (Landgraf and Tuschl, unpublished).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001879"
FT /product="dre-miR-455-5p"
FT /evidence=not_experimental
FT /similarity="MI0003513"
FT miRNA 52..74
FT /accession="MIMAT0031993"
FT /product="dre-miR-455-3p"
FT /evidence=not_experimental
XX
SQ Sequence 96 BP; 20 A; 27 C; 25 G; 0 T; 24 other;
ucccuggugu gaggguaugu gcccuuggac uacaucgugg aagccagcac caugcagucc 60
augggcauau acacuugccu caaggccuag aucuuc 96
//
ID dre-mir-430c-2 standard; RNA; DRE; 73 BP.
XX
AC MI0002079;
XX
DE Danio rerio miR-430c-2 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628924; mir430c-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-3 standard; RNA; DRE; 73 BP.
XX
AC MI0002080;
XX
DE Danio rerio miR-430c-3 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628741; mir430c-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-4 standard; RNA; DRE; 73 BP.
XX
AC MI0002081;
XX
DE Danio rerio miR-430c-4 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628742; mir430c-4.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-5 standard; RNA; DRE; 73 BP.
XX
AC MI0002082;
XX
DE Danio rerio miR-430c-5 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628870; mir430c-5.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-6 standard; RNA; DRE; 73 BP.
XX
AC MI0002083;
XX
DE Danio rerio miR-430c-6 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628743; mir430c-6.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-7 standard; RNA; DRE; 73 BP.
XX
AC MI0002087;
XX
DE Danio rerio miR-430c-7 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628834; mir430c-7.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-8 standard; RNA; DRE; 73 BP.
XX
AC MI0002088;
XX
DE Danio rerio miR-430c-8 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628925; mir430c-8.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-9 standard; RNA; DRE; 73 BP.
XX
AC MI0002089;
XX
DE Danio rerio miR-430c-9 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628744; mir430c-9.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-10 standard; RNA; DRE; 73 BP.
XX
AC MI0002090;
XX
DE Danio rerio miR-430c-10 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628745; mir430c-10.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-11 standard; RNA; DRE; 73 BP.
XX
AC MI0002091;
XX
DE Danio rerio miR-430c-11 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628746; mir430c-11.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-12 standard; RNA; DRE; 73 BP.
XX
AC MI0002092;
XX
DE Danio rerio miR-430c-12 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628966; mir430c-12.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-13 standard; RNA; DRE; 73 BP.
XX
AC MI0002093;
XX
DE Danio rerio miR-430c-13 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628957; mir430c-13.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-14 standard; RNA; DRE; 73 BP.
XX
AC MI0002094;
XX
DE Danio rerio miR-430c-14 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628747; mir430c-14.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-15 standard; RNA; DRE; 73 BP.
XX
AC MI0002095;
XX
DE Danio rerio miR-430c-15 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628926; mir430c-15.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-16 standard; RNA; DRE; 73 BP.
XX
AC MI0002096;
XX
DE Danio rerio miR-430c-16 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628748; mir430c-16.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-17 standard; RNA; DRE; 73 BP.
XX
AC MI0002097;
XX
DE Danio rerio miR-430c-17 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628749; mir430c-17.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-18 standard; RNA; DRE; 73 BP.
XX
AC MI0002098;
XX
DE Danio rerio miR-430c-18 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628750; mir430c-18.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430a-2 standard; RNA; DRE; 82 BP.
XX
AC MI0002111;
XX
DE Danio rerio miR-430a-2 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628751; mir430a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031994"
FT /product="dre-miR-430a-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 19 A; 15 C; 22 G; 0 T; 26 other;
gucacuaucg guacccucac aaaggcacug acuuggaugc uguaauuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-3 standard; RNA; DRE; 82 BP.
XX
AC MI0002112;
XX
DE Danio rerio miR-430a-3 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628752; mir430a-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031994"
FT /product="dre-miR-430a-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 19 A; 15 C; 22 G; 0 T; 26 other;
gucacuaucg guacccucac aaaggcacug acuuggaugc uguaauuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-4 standard; RNA; DRE; 82 BP.
XX
AC MI0002113;
XX
DE Danio rerio miR-430a-4 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628928; mir430a-4.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031995"
FT /product="dre-miR-430a-4-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 18 A; 15 C; 20 G; 0 T; 29 other;
gucucuaucg guacccucac aaaagcacug acuuugaugc uguauuuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-5 standard; RNA; DRE; 82 BP.
XX
AC MI0002114;
XX
DE Danio rerio miR-430a-5 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033480; mirn430a-5.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031994"
FT /product="dre-miR-430a-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 19 A; 15 C; 22 G; 0 T; 26 other;
gucacuaucg guacccucac aaaggcacug acuuggaugc uguaauuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-6 standard; RNA; DRE; 82 BP.
XX
AC MI0002115;
XX
DE Danio rerio miR-430a-6 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628836; mir430a-6.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031994"
FT /product="dre-miR-430a-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 19 A; 15 C; 22 G; 0 T; 26 other;
gucacuaucg guacccucac aaaggcacug acuuggaugc uguaauuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-7 standard; RNA; DRE; 82 BP.
XX
AC MI0002116;
XX
DE Danio rerio miR-430a-7 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628872; mir430a-7.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031994"
FT /product="dre-miR-430a-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 19 A; 15 C; 22 G; 0 T; 26 other;
gucacuaucg guacccucac aaaggcacug acuuggaugc uguaauuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-8 standard; RNA; DRE; 82 BP.
XX
AC MI0002117;
XX
DE Danio rerio miR-430a-8 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628753; mir430a-8.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031994"
FT /product="dre-miR-430a-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 19 A; 15 C; 22 G; 0 T; 26 other;
gucacuaucg guacccucac aaaggcacug acuuggaugc uguaauuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-9 standard; RNA; DRE; 82 BP.
XX
AC MI0002118;
XX
DE Danio rerio miR-430a-9 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628754; mir430a-9.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031994"
FT /product="dre-miR-430a-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 19 A; 15 C; 22 G; 0 T; 26 other;
gucacuaucg guacccucac aaaggcacug acuuggaugc uguaauuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-10 standard; RNA; DRE; 82 BP.
XX
AC MI0002119;
XX
DE Danio rerio miR-430a-10 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628755; mir430a-10.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031994"
FT /product="dre-miR-430a-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 19 A; 15 C; 22 G; 0 T; 26 other;
gucacuaucg guacccucac aaaggcacug acuuggaugc uguaauuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-11 standard; RNA; DRE; 82 BP.
XX
AC MI0002120;
XX
DE Danio rerio miR-430a-11 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628929; mir430a-11.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031996"
FT /product="dre-miR-430a-11-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 19 A; 15 C; 20 G; 0 T; 28 other;
gucucuaucg guacccucac aaaagcacug acuuugaugc uguaauuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-12 standard; RNA; DRE; 82 BP.
XX
AC MI0002121;
XX
DE Danio rerio miR-430a-12 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628837; mir430a-12.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031997"
FT /product="dre-miR-430a-12-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 18 A; 15 C; 20 G; 0 T; 29 other;
gucucuaucg guacccucac aaaagcacug acuuugaugc uguauuuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-13 standard; RNA; DRE; 82 BP.
XX
AC MI0002122;
XX
DE Danio rerio miR-430a-13 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628873; mir430a-13.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031998"
FT /product="dre-miR-430a-13-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 18 A; 15 C; 20 G; 0 T; 29 other;
gucucuaucg guacccucac aaaagcacug acuuugaugc uguauuuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-14 standard; RNA; DRE; 82 BP.
XX
AC MI0002123;
XX
DE Danio rerio miR-430a-14 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628756; mir430a-14.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031999"
FT /product="dre-miR-430a-14-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 18 A; 15 C; 20 G; 0 T; 29 other;
gucucuaucg guacccucac aaaagcacug acuuugaugc uguauuuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-15 standard; RNA; DRE; 82 BP.
XX
AC MI0002124;
XX
DE Danio rerio miR-430a-15 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628757; mir430a-15.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0032000"
FT /product="dre-miR-430a-15-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 18 A; 15 C; 20 G; 0 T; 29 other;
gucucuaucg guacccucac aaaagcacug acuuugaugc uguauuuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-16 standard; RNA; DRE; 82 BP.
XX
AC MI0002125;
XX
DE Danio rerio miR-430a-16 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628758; mir430a-16.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0032001"
FT /product="dre-miR-430a-16-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 18 A; 14 C; 20 G; 0 T; 30 other;
gucucuaucg guacccucac aaaagcacug acuuugaugc uguauuuggu aagugcuauu 60
uguuggggua guuuuaagug ac 82
//
ID dre-mir-430a-17 standard; RNA; DRE; 82 BP.
XX
AC MI0002126;
XX
DE Danio rerio miR-430a-17 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628930; mir430a-17.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0032002"
FT /product="dre-miR-430a-17-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 18 A; 14 C; 20 G; 0 T; 30 other;
gucucuaucg guacccucac aaaagcacug acuuugaugc uguauuuggu aagugcuauu 60
uguuggggua guuuuaagug ac 82
//
ID dre-mir-430i-1 standard; RNA; DRE; 82 BP.
XX
AC MI0002139;
XX
DE Danio rerio miR-430i-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628838; mir430i-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0032003"
FT /product="dre-miR-430i-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001880"
FT /product="dre-miR-430i-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 82 BP; 18 A; 16 C; 19 G; 0 T; 29 other;
gucucuaucg guacccucac aaaagcacug acuuugaugc uguauuuggu aagugcuauu 60
uguuggcgua guuucaagug ac 82
//
ID dre-mir-430i-2 standard; RNA; DRE; 82 BP.
XX
AC MI0002140;
XX
DE Danio rerio miR-430i-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628762; mir430i-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0032003"
FT /product="dre-miR-430i-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001880"
FT /product="dre-miR-430i-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 82 BP; 18 A; 16 C; 19 G; 0 T; 29 other;
gucucuaucg guacccucac aaaagcacug acuuugaugc uguauuuggu aagugcuauu 60
uguuggcgua guuucaagug ac 82
//
ID dre-mir-430i-3 standard; RNA; DRE; 82 BP.
XX
AC MI0002141;
XX
DE Danio rerio miR-430i-3 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628874; mir430i-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0032003"
FT /product="dre-miR-430i-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001880"
FT /product="dre-miR-430i-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 82 BP; 18 A; 16 C; 19 G; 0 T; 29 other;
gucucuaucg guacccucac aaaagcacug acuuugaugc uguauuuggu aagugcuauu 60
uguuggcgua guuucaagug ac 82
//
ID dre-mir-430b-2 standard; RNA; DRE; 81 BP.
XX
AC MI0002142;
XX
DE Danio rerio miR-430b-2 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628763; mir430b-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 22 A; 12 C; 19 G; 0 T; 28 other;
caguugaggu caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-3 standard; RNA; DRE; 81 BP.
XX
AC MI0002143;
XX
DE Danio rerio miR-430b-3 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628932; mir430b-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 22 A; 12 C; 19 G; 0 T; 28 other;
caguugaggu caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-4 standard; RNA; DRE; 81 BP.
XX
AC MI0002144;
XX
DE Danio rerio miR-430b-4 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628764; mir430b-4.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 22 A; 14 C; 18 G; 0 T; 27 other;
caguugacau caacucuaac uuuagcaucu uucuuuuaag cagagcagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-6 standard; RNA; DRE; 81 BP.
XX
AC MI0002146;
XX
DE Danio rerio miR-430b-6 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628839; mir430b-6.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 21 A; 13 C; 19 G; 0 T; 28 other;
caguugacgu caacucuaac uuuagcaucu uucuuuuaag cagaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-7 standard; RNA; DRE; 81 BP.
XX
AC MI0002147;
XX
DE Danio rerio miR-430b-7 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628765; mir430b-7.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 21 A; 13 C; 19 G; 0 T; 28 other;
caguugacgu caacucuaac uuuagcaucu uucuuuuaag cagaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-8 standard; RNA; DRE; 81 BP.
XX
AC MI0002148;
XX
DE Danio rerio miR-430b-8 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628766; mir430b-8.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 21 A; 13 C; 19 G; 0 T; 28 other;
caguugacgu caacucuaac uuuagcaucu uucuuuuaag cagaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-9 standard; RNA; DRE; 81 BP.
XX
AC MI0002149;
XX
DE Danio rerio miR-430b-9 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628875; mir430b-9.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 22 A; 12 C; 18 G; 0 T; 29 other;
caguugaggu caacucuaac uuuagcaucu uucuuuuaag cauaguagaa agugcuauca 60
aguuggggua gauguuuacu g 81
//
ID dre-mir-430b-10 standard; RNA; DRE; 81 BP.
XX
AC MI0002150;
XX
DE Danio rerio miR-430b-10 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033509; mirn430b-10.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 23 A; 13 C; 17 G; 0 T; 28 other;
caguugacau caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-11 standard; RNA; DRE; 81 BP.
XX
AC MI0002151;
XX
DE Danio rerio miR-430b-11 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628933; mir430b-11.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 23 A; 13 C; 17 G; 0 T; 28 other;
caguugacau caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-12 standard; RNA; DRE; 81 BP.
XX
AC MI0002152;
XX
DE Danio rerio miR-430b-12 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628767; mir430b-12.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 23 A; 13 C; 17 G; 0 T; 28 other;
caguugacau caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-13 standard; RNA; DRE; 81 BP.
XX
AC MI0002153;
XX
DE Danio rerio miR-430b-13 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628959; mir430b-13.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 23 A; 13 C; 17 G; 0 T; 28 other;
caguugacau caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-14 standard; RNA; DRE; 81 BP.
XX
AC MI0002154;
XX
DE Danio rerio miR-430b-14 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628768; mir430b-14.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 23 A; 13 C; 17 G; 0 T; 28 other;
caguugacau caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-15 standard; RNA; DRE; 81 BP.
XX
AC MI0002155;
XX
DE Danio rerio miR-430b-15 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628934; mir430b-15.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 23 A; 13 C; 17 G; 0 T; 28 other;
caguugacau caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-16 standard; RNA; DRE; 81 BP.
XX
AC MI0002156;
XX
DE Danio rerio miR-430b-16 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628876; mir430b-16.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 23 A; 13 C; 17 G; 0 T; 28 other;
caguugacau caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-17 standard; RNA; DRE; 81 BP.
XX
AC MI0002157;
XX
DE Danio rerio miR-430b-17 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628769; mir430b-17.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 23 A; 13 C; 17 G; 0 T; 28 other;
caguugacau caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-18 standard; RNA; DRE; 81 BP.
XX
AC MI0002158;
XX
DE Danio rerio miR-430b-18 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628770; mir430b-18.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 22 A; 11 C; 19 G; 0 T; 29 other;
caguugaggu caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuuguu g 81
//
ID dre-mir-430b-5 standard; RNA; DRE; 81 BP.
XX
AC MI0002166;
XX
DE Danio rerio miR-430b-5 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628840; mir430b-5.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 23 A; 13 C; 17 G; 0 T; 28 other;
caguugacau caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-19 standard; RNA; DRE; 81 BP.
XX
AC MI0002170;
XX
DE Danio rerio miR-430b-19 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628771; mir430b-19.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 22 A; 11 C; 19 G; 0 T; 29 other;
caguugaggu caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuuguu g 81
//
ID dre-mir-430b-20 standard; RNA; DRE; 81 BP.
XX
AC MI0002171;
XX
DE Danio rerio miR-430b-20 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628935; mir430b-20.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 22 A; 12 C; 18 G; 0 T; 29 other;
caguugaggu caacucuaac uuuagcaucu uucuuuuaag cauaguagaa agugcuauca 60
aguuggggua gauguuuacu g 81
//
ID dre-mir-457a standard; RNA; DRE; 83 BP.
XX
AC MI0002177;
XX
DE Danio rerio miR-457a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628773; mir457a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001883"
FT /product="dre-miR-457a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 83 BP; 16 A; 24 C; 21 G; 0 T; 22 other;
ugccugacag aagcagcaca ucaauauugg cagcugcccu cucucugggu ugccaguaug 60
guuugugcug cucccgucag aca 83
//
ID dre-mir-457b standard; RNA; DRE; 78 BP.
XX
AC MI0002178;
XX
DE Danio rerio miR-457b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628774; mir457b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001884"
FT /product="dre-miR-457b-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 48..69
FT /accession="MIMAT0032004"
FT /product="dre-miR-457b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 78 BP; 22 A; 12 C; 20 G; 0 T; 24 other;
gaauguacua aagcagcaca uaaauacugg aggugauugu gguguuaucc aguauugcug 60
uucugcugua guaagacc 78
//
ID dre-mir-458 standard; RNA; DRE; 78 BP.
XX
AC MI0002179;
XX
DE Danio rerio miR-458 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628937; mir458.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0032005"
FT /product="dre-miR-458-5p"
FT /evidence=not_experimental
FT miRNA 48..69
FT /accession="MIMAT0001885"
FT /product="dre-miR-458-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 78 BP; 22 A; 17 C; 17 G; 0 T; 22 other;
gugcagauag cagcgccauu uacagagcua uaagcaucau aguugucaua gcucuuugaa 60
ugguacugcc auaugcac 78
//
ID dre-mir-460 standard; RNA; DRE; 77 BP.
XX
AC MI0002181;
XX
DE Danio rerio miR-460 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628842; mir460.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001887"
FT /product="dre-miR-460-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 48..69
FT /accession="MIMAT0001888"
FT /product="dre-miR-460-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 77 BP; 19 A; 20 C; 21 G; 0 T; 17 other;
cuccucggcu ccugcauugu acacacugug cggaaaacau ggacaugcac agcgcauaca 60
auguggaugc uguggag 77
//
ID mmu-mir-463 standard; RNA; MMU; 75 BP.
XX
AC MI0002398;
XX
DE Mus musculus miR-463 stem-loop
XX
RN [1]
RX PUBMED; 15901636.
RA Yu Z, Raabe T, Hecht NB;
RT "MicroRNA Mirn122a reduces expression of the posttranscriptionally
RT regulated germ cell transition protein 2 (Tnp2) messenger RNA (mRNA) by
RT mRNA cleavage";
RL Biol Reprod. 73:427-433(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619451; Mir463.
DR ENTREZGENE; 723887; Mir463.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0002104"
FT /product="mmu-miR-463-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 41..62
FT /accession="MIMAT0004758"
FT /product="mmu-miR-463-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 75 BP; 27 A; 12 C; 13 G; 0 T; 23 other;
cuuuaccuaa uuuguugucc aucauguaaa acauaaauga ugauagacac cauauaaggu 60
agaggaaggu ucacu 75
//
ID mmu-mir-467a-1 standard; RNA; MMU; 73 BP.
XX
AC MI0002402;
XX
DE Mus musculus miR-467a-1 stem-loop
XX
RN [1]
RX PUBMED; 15901636.
RA Yu Z, Raabe T, Hecht NB;
RT "MicroRNA Mirn122a reduces expression of the posttranscriptionally
RT regulated germ cell transition protein 2 (Tnp2) messenger RNA (mRNA) by
RT mRNA cleavage";
RL Biol Reprod. 73:427-433(2005).
XX
RN [2]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629612; Mirn467a.
DR ENTREZGENE; 735286; Mir467a-1.
XX
CC The sequence of miR-467 is of low complexity. The sequence maps exactly
CC to several genomic positions, and many more with 1 or 2 substitutions.
CC Confidence in this miRNA might therefore be reduced.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0003409"
FT /product="mmu-miR-467a-5p"
FT /evidence=experimental
FT /experiment="MPSS [2], cloned [3], Illumina [4-5]"
FT miRNA 45..66
FT /accession="MIMAT0002108"
FT /product="mmu-miR-467a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
XX
SQ Sequence 73 BP; 21 A; 17 C; 12 G; 0 T; 23 other;
cugugugcgu aagugccugc auguauaugc guguauauuu uaugcauaua cauacacaca 60
ccuacacaca cau 73
//
ID mmu-mir-470 standard; RNA; MMU; 75 BP.
XX
AC MI0002405;
XX
DE Mus musculus miR-470 stem-loop
XX
RN [1]
RX PUBMED; 15901636.
RA Yu Z, Raabe T, Hecht NB;
RT "MicroRNA Mirn122a reduces expression of the posttranscriptionally
RT regulated germ cell transition protein 2 (Tnp2) messenger RNA (mRNA) by
RT mRNA cleavage";
RL Biol Reprod. 73:427-433(2005).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619418; Mir470.
DR ENTREZGENE; 723873; Mir470.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0002111"
FT /product="mmu-miR-470-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 44..65
FT /accession="MIMAT0004760"
FT /product="mmu-miR-470-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 75 BP; 23 A; 16 C; 16 G; 0 T; 20 other;
cagugcucuu cuuggacugg cacuggugag uuaaacuaaa uacaaccagu accuuucuga 60
gaagaguaaa gcuca 75
//
ID mmu-mir-471 standard; RNA; MMU; 67 BP.
XX
AC MI0002406;
XX
DE Mus musculus miR-471 stem-loop
XX
RN [1]
RX PUBMED; 15901636.
RA Yu Z, Raabe T, Hecht NB;
RT "MicroRNA Mirn122a reduces expression of the posttranscriptionally
RT regulated germ cell transition protein 2 (Tnp2) messenger RNA (mRNA) by
RT mRNA cleavage";
RL Biol Reprod. 73:427-433(2005).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619419; Mir471.
DR ENTREZGENE; 723939; Mir471.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0002112"
FT /product="mmu-miR-471-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 42..63
FT /accession="MIMAT0017195"
FT /product="mmu-miR-471-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 67 BP; 23 A; 9 C; 14 G; 0 T; 21 other;
gugcuuuacg uaguauagug cuuuucacau uaaacaaaaa gugaaaggug ccauacuaug 60
uauagga 67
//
ID ssc-mir-145 standard; RNA; SSC; 86 BP.
XX
AC MI0002417;
XX
DE Sus scrofa miR-145 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 18548309.
RA Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS;
RT "Identification and characterization of new microRNAs from pig";
RL Mamm Genome. 19:570-580(2008).
XX
RN [3]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [4]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [5]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [6]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316550; MIR145.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0002123"
FT /product="ssc-miR-145-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [3,5-6]"
FT /similarity="MI0000461"
FT miRNA 54..75
FT /accession="MIMAT0022919"
FT /product="ssc-miR-145-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 86 BP; 17 A; 21 C; 22 G; 0 T; 26 other;
caccuugucc ucacggucca guuuucccag gaaucccuua gaugcugaga uggggauucc 60
uggaaauacu guucuugagg ucaugg 86
//
ID ssc-mir-148a standard; RNA; SSC; 68 BP.
XX
AC MI0002418;
XX
DE Sus scrofa miR-148a stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [3]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [4]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [5]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316604; MIR148A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0022920"
FT /product="ssc-miR-148a-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 44..65
FT /accession="MIMAT0002124"
FT /product="ssc-miR-148a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2,4-5], cloned [3]"
FT /similarity="MI0000253"
XX
SQ Sequence 68 BP; 21 A; 15 C; 15 G; 0 T; 17 other;
gaggcaaagu ucugagacac uccgacucug aauaugauag aagucagugc acuacagaac 60
uuugucuc 68
//
ID ssc-mir-24-1 standard; RNA; SSC; 72 BP.
XX
AC MI0002428;
XX
DE Sus scrofa miR-24-1 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 18548309.
RA Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS;
RT "Identification and characterization of new microRNAs from pig";
RL Mamm Genome. 19:570-580(2008).
XX
RN [3]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [4]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [5]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [6]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316553; MIR24-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..35
FT /accession="MIMAT0015210"
FT /product="ssc-miR-24-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [3,5-6]"
FT miRNA 50..71
FT /accession="MIMAT0002134"
FT /product="ssc-miR-24-3p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [3,5-6]"
FT /similarity="MI0000081"
XX
SQ Sequence 72 BP; 16 A; 20 C; 19 G; 0 T; 17 other;
cucugccucc cgugccuacu gagcugaaac acaguugauu ugugcagacu ggcucaguuc 60
agcaggaaca gg 72
//
ID ssc-mir-28 standard; RNA; SSC; 86 BP.
XX
AC MI0002430;
XX
DE Sus scrofa miR-28 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [4]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316590; MIR28.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002136"
FT /product="ssc-miR-28-5p"
FT /evidence=experimental
FT /experiment="Illumina [2-3]"
FT /similarity="MI0000086"
FT miRNA 54..75
FT /accession="MIMAT0015211"
FT /product="ssc-miR-28-3p"
FT /evidence=experimental
FT /experiment="Illumina [2-4]"
XX
SQ Sequence 86 BP; 14 A; 25 C; 22 G; 0 T; 25 other;
gguccuugcc cucaaggagc ucacagucua uugaguugcc uuucugucuu ccccacuaga 60
uugugagcuc cuggagggca ggcacu 86
//
ID ssc-mir-140 standard; RNA; SSC; 70 BP.
XX
AC MI0002437;
XX
DE Sus scrofa miR-140 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 18548309.
RA Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS;
RT "Identification and characterization of new microRNAs from pig";
RL Mamm Genome. 19:570-580(2008).
XX
RN [3]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [4]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316558; MIR140.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..27
FT /accession="MIMAT0002143"
FT /product="ssc-miR-140-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000456"
FT miRNA 45..67
FT /accession="MIMAT0006786"
FT /product="ssc-miR-140-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 70 BP; 15 A; 18 C; 19 G; 0 T; 18 other;
ccugccagug guuuuacccu augguagguu acgucaugcu guucuaccac aggguagaac 60
cacggacagg 70
//
ID ssc-mir-214 standard; RNA; SSC; 110 BP.
XX
AC MI0002441;
XX
DE Sus scrofa miR-214 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [3]
RX PUBMED; 25230983.
RA Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M;
RT "The characteristics of the porcine (Sus scrofa) liver miRNAome with the
RT use of next generation sequencing";
RL J Appl Genet. 56:239-252(2015).
XX
DR ENTREZGENE; 100316560; MIR214.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..51
FT /accession="MIMAT0037318"
FT /product="ssc-miR-214-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 71..91
FT /accession="MIMAT0002147"
FT /product="ssc-miR-214-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000290"
XX
SQ Sequence 110 BP; 24 A; 34 C; 29 G; 0 T; 23 other;
ggccuggcug gacggaguug ucaugugucu gccugucuac acuugcugug cagaacaucc 60
gcucaccugu acagcaggca cagacaggca gucacaugac aacccagccu 110
//
ID ssc-mir-21 standard; RNA; SSC; 92 BP.
XX
AC MI0002459;
XX
DE Sus scrofa miR-21 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 18548309.
RA Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS;
RT "Identification and characterization of new microRNAs from pig";
RL Mamm Genome. 19:570-580(2008).
XX
RN [3]
RX PUBMED; 19196471.
RA Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva
RA U, Zhang W, Sunkar R;
RT "Cloning, characterization and expression analysis of porcine microRNAs";
RL BMC Genomics. 10:65(2009).
XX
RN [4]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [5]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [6]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [7]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
RN [8]
RX PUBMED; 25230983.
RA Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M;
RT "The characteristics of the porcine (Sus scrofa) liver miRNAome with the
RT use of next generation sequencing";
RL J Appl Genet. 56:239-252(2015).
XX
DR ENTREZGENE; 100316568; MIR21.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0002165"
FT /product="ssc-miR-21-5p"
FT /evidence=experimental
FT /experiment="cloned [2,5], 454 [3], Illumina [4,6-7]"
FT /similarity="MI0000850"
FT miRNA 56..76
FT /accession="MIMAT0037322"
FT /product="ssc-miR-21-3p"
FT /evidence=experimental
FT /experiment="Illumina [8]"
XX
SQ Sequence 92 BP; 19 A; 19 C; 24 G; 0 T; 30 other;
uguaccaccu ugucggguag cuuaucagac ugauguugac uguugaaucu cauggcaaca 60
gcagucgaug ggcugucuga cauuuuggua uc 92
//
ID hsa-mir-410 standard; RNA; HSA; 80 BP.
XX
AC MI0002465;
XX
DE Homo sapiens miR-410 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [3]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [4]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 32065; MIR410.
DR ENTREZGENE; 574434; MIR410.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0026558"
FT /product="hsa-miR-410-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 50..70
FT /accession="MIMAT0002171"
FT /product="hsa-miR-410-3p"
FT /evidence=experimental
FT /experiment="array-cloned [2], cloned [3-5], Northern [3],
FT Illumina [6]"
FT /similarity="MI0001161"
XX
SQ Sequence 80 BP; 21 A; 13 C; 20 G; 0 T; 26 other;
gguaccugag aagagguugu cugugaugag uucgcuuuua uuaaugacga auauaacaca 60
gauggccugu uuucaguacc 80
//
ID hsa-mir-376b standard; RNA; HSA; 100 BP.
XX
AC MI0002466;
XX
DE Homo sapiens miR-376b stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 17322061.
RA Kawahara Y, Zinshteyn B, Sethupathy P, Iizasa H, Hatzigeorgiou AG,
RA Nishikura K;
RT "Redirection of silencing targets by adenosine-to-inosine editing of
RT miRNAs";
RL Science. 315:1137-1140(2007).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 22282338.
RA Voellenkle C, Rooij Jv, Guffanti A, Brini E, Fasanaro P, Isaia E, Croft L,
RA David M, Capogrossi MC, Moles A, Felsani A, Martelli F;
RT "Deep-sequencing of endothelial cells exposed to hypoxia reveals the
RT complexity of known and novel microRNAs";
RL RNA. 18:472-484(2012).
XX
DR HGNC; 32066; MIR376B.
DR ENTREZGENE; 574435; MIR376B.
XX
CC The mature miR-376b products have been shown to be modified by A to I
CC edits [2].
XX
FH Key Location/Qualifiers
FH
FT modified_base 67
FT /mod_base=i
FT miRNA 24..45
FT /accession="MIMAT0022923"
FT /product="hsa-miR-376b-5p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
FT miRNA 62..83
FT /accession="MIMAT0002172"
FT /product="hsa-miR-376b-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
FT /similarity="MI0001162"
XX
SQ Sequence 100 BP; 26 A; 17 C; 18 G; 0 T; 39 other;
caguccuucu uugguauuua aaacguggau auuccuucua uguuuacgug auuccugguu 60
aaucauagag gaaaauccau guuuucagua ucaaaugcug 100
//
ID hsa-mir-483 standard; RNA; HSA; 76 BP.
XX
AC MI0002467;
XX
DE Homo sapiens miR-483 stem-loop
XX
RN [1]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32340; MIR483.
DR ENTREZGENE; 619552; MIR483.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0004761"
FT /product="hsa-miR-483-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 48..68
FT /accession="MIMAT0002173"
FT /product="hsa-miR-483-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
XX
SQ Sequence 76 BP; 14 A; 25 C; 21 G; 0 T; 16 other;
gagggggaag acgggaggaa agaagggagu gguuccauca cgccuccuca cuccucuccu 60
cccgucuucu ccucuc 76
//
ID hsa-mir-485 standard; RNA; HSA; 73 BP.
XX
AC MI0002469;
XX
DE Homo sapiens miR-485 stem-loop
XX
RN [1]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [2]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32067; MIR485.
DR ENTREZGENE; 574436; MIR485.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0002175"
FT /product="hsa-miR-485-5p"
FT /evidence=experimental
FT /experiment="array-cloned [2], cloned [3]"
FT miRNA 46..67
FT /accession="MIMAT0002176"
FT /product="hsa-miR-485-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], array-cloned [2]"
XX
SQ Sequence 73 BP; 17 A; 17 C; 18 G; 0 T; 21 other;
acuuggagag aggcuggccg ugaugaauuc gauucaucaa agcgagucau acacggcucu 60
ccucucuuuu agu 73
//
ID hsa-mir-486-1 standard; RNA; HSA; 68 BP.
XX
AC MI0002470;
XX
DE Homo sapiens miR-486 stem-loop
XX
RN [1]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32342; MIR486.
DR ENTREZGENE; 619554; MIR486.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0002177"
FT /product="hsa-miR-486-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
FT miRNA 46..66
FT /accession="MIMAT0004762"
FT /product="hsa-miR-486-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 68 BP; 12 A; 24 C; 19 G; 0 T; 13 other;
gcauccugua cugagcugcc ccgaggcccu ucaugcugcc cagcucgggg cagcucagua 60
caggauac 68
//
ID hsa-mir-487a standard; RNA; HSA; 80 BP.
XX
AC MI0002471;
XX
DE Homo sapiens miR-487a stem-loop
XX
RN [1]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 32343; MIR487A.
DR ENTREZGENE; 619555; MIR487A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0026559"
FT /product="hsa-miR-487a-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 49..70
FT /accession="MIMAT0002178"
FT /product="hsa-miR-487a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], Illumina [4]"
XX
SQ Sequence 80 BP; 19 A; 15 C; 18 G; 0 T; 28 other;
gguacuugaa gagugguuau cccugcugug uucgcuuaau uuaugacgaa ucauacaggg 60
acauccaguu uuucaguauc 80
//
ID mml-mir-141 standard; RNA; MML; 95 BP.
XX
AC MI0002485;
XX
DE Macaca mulatta miR-141 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315119; MIR141.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..38
FT /accession="MIMAT0026561"
FT /product="mml-miR-141-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 60..80
FT /accession="MIMAT0002196"
FT /product="mml-miR-141-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000457"
XX
SQ Sequence 95 BP; 16 A; 24 C; 28 G; 0 T; 27 other;
uggccggccc uggguccauc uuccaguaca guguuggaug gucuaauugu gaagcuccua 60
acacugucug guaaagaugg cccccggguc gguuu 95
//
ID mml-mir-15b standard; RNA; MML; 98 BP.
XX
AC MI0002496;
XX
DE Macaca mulatta miR-15b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315379; MIR15B.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0002207"
FT /product="mml-miR-15b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000438"
FT miRNA 58..79
FT /accession="MIMAT0026562"
FT /product="mml-miR-15b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 98 BP; 32 A; 17 C; 18 G; 0 T; 31 other;
uugaggccuu aaaguacugu agcagcacau caugguuuac auacuacagu caagaugcga 60
aucauuauuu gcugcucuag aaauuuaagg aaauucau 98
//
ID mml-mir-30b standard; RNA; MML; 88 BP.
XX
AC MI0002502;
XX
DE Macaca mulatta miR-30b stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315434; MIR30B.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0002213"
FT /product="mml-miR-30b-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000441"
FT miRNA 55..76
FT /accession="MIMAT0026563"
FT /product="mml-miR-30b-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 88 BP; 23 A; 17 C; 21 G; 0 T; 27 other;
accaaguuuc aguucaugua aacauccuac acucagcugu aauacaugga uuggcuggga 60
gguggauguu uacuucagcu gacuugga 88
//
ID mml-mir-125b-1 standard; RNA; MML; 88 BP.
XX
AC MI0002514;
XX
DE Macaca mulatta miR-125b-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315120; MIR125B-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002225"
FT /product="mml-miR-125b-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000446"
FT miRNA 55..76
FT /accession="MIMAT0026564"
FT /product="mml-miR-125b-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 88 BP; 14 A; 24 C; 23 G; 0 T; 27 other;
ugcgcuccuc ucagucccug agacccuaac uugugauguu uaccguuuaa auccacgggu 60
uaggcucuug ggagcugcga gucgugcu 88
//
ID mml-mir-128a standard; RNA; MML; 82 BP.
XX
AC MI0002518;
XX
DE Macaca mulatta miR-128a stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315121; MIR128A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0026565"
FT /product="mml-miR-128a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 50..71
FT /accession="MIMAT0002229"
FT /product="mml-miR-128a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000447"
XX
SQ Sequence 82 BP; 13 A; 19 C; 22 G; 0 T; 28 other;
ugagcuguug gauucggggc cguagcacug ucugagaggu uuacauuucu cacagugaac 60
cggucucuuu uucagcugcu uc 82
//
ID mml-mir-130a standard; RNA; MML; 81 BP.
XX
AC MI0002524;
XX
DE Macaca mulatta miR-130a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315485; MIR130A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0026566"
FT /product="mml-miR-130a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 55..74
FT /accession="MIMAT0002235"
FT /product="mml-miR-130a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000448"
XX
SQ Sequence 81 BP; 16 A; 21 C; 20 G; 0 T; 24 other;
ugcugcuggc cagagcucuu uucacauugu gcuacugucu gcaccuguca cuagcagugc 60
aauguuaaaa gggcauuggc c 81
//
ID mml-mir-133a standard; RNA; MML; 88 BP.
XX
AC MI0002533;
XX
DE Macaca mulatta miR-133a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315122; MIR133A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..74
FT /accession="MIMAT0002244"
FT /product="mml-miR-133a"
FT /evidence=not_experimental
FT /similarity="MI0000450"
XX
SQ Sequence 88 BP; 24 A; 21 C; 18 G; 0 T; 25 other;
acaaugcuuu gcuagagcug guaaaaugga accaaaucgc cucuucaaug gauuuggucc 60
ccuucaacca gcuguagcua ugcauuga 88
//
ID mml-mir-135a-2 standard; RNA; MML; 100 BP.
XX
AC MI0002540;
XX
DE Macaca mulatta miR-135a-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315574; MIR135A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0002251"
FT /product="mml-miR-135a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000453"
FT miRNA 61..82
FT /accession="MIMAT0026567"
FT /product="mml-miR-135a-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 100 BP; 34 A; 13 C; 19 G; 0 T; 34 other;
agauaaauuc acucuagugc uuuauggcuu uuuauuccua ugugauagua auaaagucuc 60
auguagggau ggaagccaug aaauacauug ugaaaaauca 100
//
ID mml-mir-145 standard; RNA; MML; 88 BP.
XX
AC MI0002558;
XX
DE Macaca mulatta miR-145 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315123; MIR145.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0002266"
FT /product="mml-miR-145-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000461"
FT miRNA 54..76
FT /accession="MIMAT0026568"
FT /product="mml-miR-145-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 88 BP; 19 A; 21 C; 20 G; 0 T; 28 other;
caccuugucc ucacggucca guuuucccag gaaucccuua aaugcuaaga uggggauucc 60
uggaaauacu guucuugagg ucaugguu 88
//
ID mml-mir-153-1 standard; RNA; MML; 90 BP.
XX
AC MI0002563;
XX
DE Macaca mulatta miR-153-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315124; MIR153-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0026569"
FT /product="mml-miR-153-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 54..73
FT /accession="MIMAT0002271"
FT /product="mml-miR-153-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000463"
XX
SQ Sequence 90 BP; 20 A; 21 C; 21 G; 0 T; 28 other;
cucacagcug ccagugucau uuuugugauc ugcagcuagu auucucacuc caguugcaua 60
gucacaaaag ugaucauugg cagguguggc 90
//
ID mml-mir-153-2 standard; RNA; MML; 87 BP.
XX
AC MI0002566;
XX
DE Macaca mulatta miR-153-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315435; MIR153-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0031060"
FT /product="mml-miR-153-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 53..72
FT /accession="MIMAT0002271"
FT /product="mml-miR-153-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000464"
XX
SQ Sequence 87 BP; 23 A; 14 C; 24 G; 0 T; 26 other;
agcgguggcc agugucauuu uugugauguu gcagcuagua auaugagccc aguugcauag 60
ucacaaaagu gaucauugga aacugug 87
//
ID mml-mir-125b-2 standard; RNA; MML; 89 BP.
XX
AC MI0002579;
XX
DE Macaca mulatta miR-125b-2 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315486; MIR125B-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0002225"
FT /product="mml-miR-125b-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000470"
FT miRNA 56..77
FT /accession="MIMAT0031073"
FT /product="mml-miR-125b-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 89 BP; 22 A; 21 C; 23 G; 0 T; 23 other;
accagacuuu uccuaguccc ugagacccua acuugugagg uauuuuagua acaucacaag 60
ucaggcucuu gggaccuagg cggagggga 89
//
ID mml-mir-127 standard; RNA; MML; 97 BP.
XX
AC MI0002582;
XX
DE Macaca mulatta miR-127 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 606739; MIR127.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0026570"
FT /product="mml-miR-127-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 57..78
FT /accession="MIMAT0002281"
FT /product="mml-miR-127-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000472"
XX
SQ Sequence 97 BP; 19 A; 26 C; 26 G; 0 T; 26 other;
ugugaucacu gucuccagcc ugcugaagcu cagagggcuc ugauucagaa agaucaucgg 60
auccgucuga gcuuggcugg ucggaagucu ccucauc 97
//
ID mml-mir-188 standard; RNA; MML; 86 BP.
XX
AC MI0002608;
XX
DE Macaca mulatta miR-188 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315380; MIR188.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002307"
FT /product="mml-miR-188-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000484"
FT miRNA 55..74
FT /accession="MIMAT0026571"
FT /product="mml-miR-188-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 86 BP; 16 A; 25 C; 23 G; 0 T; 22 other;
ugcucccucu cucacauccc uugcauggug gagggugagc uuuaugaaaa ccccucccac 60
augcaggguu ugcaggaugg ugagcc 86
//
ID mml-mir-190a standard; RNA; MML; 85 BP.
XX
AC MI0002613;
XX
DE Macaca mulatta miR-190a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315126; MIR190A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002312"
FT /product="mml-miR-190a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000486"
FT miRNA 52..72
FT /accession="MIMAT0026572"
FT /product="mml-miR-190a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 85 BP; 22 A; 15 C; 14 G; 0 T; 34 other;
ugcaggccuc ugugugauau guuugauaua uuagguuguu auuuaaucca acuauauauc 60
aaacauauuc cuacaguguc uugcc 85
//
ID mml-mir-21 standard; RNA; MML; 72 BP.
XX
AC MI0002621;
XX
DE Macaca mulatta miR-21 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315127; MIR21.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0002320"
FT /product="mml-miR-21-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000077"
FT miRNA 46..67
FT /accession="MIMAT0026573"
FT /product="mml-miR-21-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 72 BP; 16 A; 15 C; 20 G; 0 T; 21 other;
ugucggguag cuuaucagac ugauguugac uguugaaucu cauggcaaca ccagucgaug 60
ggcugucuga ca 72
//
ID mml-mir-22 standard; RNA; MML; 85 BP.
XX
AC MI0002631;
XX
DE Macaca mulatta miR-22 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315487; MIR22.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0002330"
FT /product="mml-miR-22"
FT /evidence=not_experimental
FT /similarity="MI0000078"
XX
SQ Sequence 85 BP; 17 A; 24 C; 22 G; 0 T; 22 other;
ggcugagccg caguaguucu ucaguggcaa gcuuuauguc cugacccagc uaaagcugcc 60
aguugaagaa cuguugcccu cugcc 85
//
ID mml-mir-24-1 standard; RNA; MML; 68 BP.
XX
AC MI0002637;
XX
DE Macaca mulatta miR-24-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315128; MIR24-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0002336"
FT /product="mml-miR-24-5p"
FT /evidence=not_experimental
FT /similarity="MI0000080"
FT miRNA 44..65
FT /accession="MIMAT0002337"
FT /product="mml-miR-24-3p"
FT /evidence=not_experimental
FT /similarity="MI0000080"
XX
SQ Sequence 68 BP; 16 A; 18 C; 16 G; 0 T; 18 other;
cuccggugcc uacugagcug auaucaguuc ucauuuuaca cacuggcuca guucagcagg 60
aacaggag 68
//
ID mml-mir-26a-1 standard; RNA; MML; 77 BP.
XX
AC MI0002646;
XX
DE Macaca mulatta miR-26a-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315436; MIR26A-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0002349"
FT /product="mml-miR-26a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000083"
FT miRNA 49..70
FT /accession="MIMAT0026574"
FT /product="mml-miR-26a-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 77 BP; 14 A; 19 C; 24 G; 0 T; 20 other;
guggccucgu ucaaguaauc caggauaggc ugugcagguc ccaaugggcc uauucuuggu 60
uacuugcacg gggacgc 77
//
ID mml-mir-29a standard; RNA; MML; 64 BP.
XX
AC MI0002662;
XX
DE Macaca mulatta miR-29a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315129; MIR29A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0026576"
FT /product="mml-miR-29a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 41..62
FT /accession="MIMAT0002365"
FT /product="mml-miR-29a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000087"
XX
SQ Sequence 64 BP; 17 A; 10 C; 11 G; 0 T; 26 other;
augacugauu ucuuuuggug uucagaguca auauaauuuu cuagcaccau cugaaaucgg 60
uuau 64
//
ID mml-mir-30a standard; RNA; MML; 71 BP.
XX
AC MI0002666;
XX
DE Macaca mulatta miR-30a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315130; MIR30A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0002369"
FT /product="mml-miR-30a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000088"
FT miRNA 47..68
FT /accession="MIMAT0002370"
FT /product="mml-miR-30a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000088"
XX
SQ Sequence 71 BP; 16 A; 16 C; 21 G; 0 T; 18 other;
gcgacuguaa acauccucga cuggaagcug ugaagccaua gaugggcuuu cagucggaug 60
uuugcagcug c 71
//
ID mml-mir-32 standard; RNA; MML; 70 BP.
XX
AC MI0002677;
XX
DE Macaca mulatta miR-32 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315131; MIR32.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0002385"
FT /product="mml-miR-32-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000090"
FT miRNA 48..67
FT /accession="MIMAT0026578"
FT /product="mml-miR-32-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 70 BP; 17 A; 11 C; 16 G; 0 T; 26 other;
ggagauauug cacauuacua aguugcaugu ugucacggcc ucaaugcaau uuagugugug 60
ugauauuuuc 70
//
ID mml-mir-33a standard; RNA; MML; 69 BP.
XX
AC MI0002684;
XX
DE Macaca mulatta miR-33a stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315132; MIR33A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..24
FT /accession="MIMAT0002392"
FT /product="mml-miR-33a"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT /similarity="MI0000091"
XX
SQ Sequence 69 BP; 13 A; 15 C; 18 G; 0 T; 23 other;
cugcggugca uuguaguugc auugcauguu cuggugguac ccaugcaaug uuuccacagu 60
gcauuacag 69
//
ID mml-mir-99a standard; RNA; MML; 81 BP.
XX
AC MI0002702;
XX
DE Macaca mulatta miR-99a stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315133; MIR99A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0002410"
FT /product="mml-miR-99a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000101"
FT miRNA 51..71
FT /accession="MIMAT0026579"
FT /product="mml-miR-99a-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 81 BP; 16 A; 20 C; 23 G; 0 T; 22 other;
cccauuggca uaaacccgua gauccgaucu uguggugaag uggaccgcac aagcucgcuu 60
cuaugggucu gugucagugu g 81
//
ID mml-mir-100 standard; RNA; MML; 80 BP.
XX
AC MI0002714;
XX
DE Macaca mulatta miR-100 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315489; MIR100.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0002422"
FT /product="mml-miR-100-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000102"
FT miRNA 49..69
FT /accession="MIMAT0026580"
FT /product="mml-miR-100-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 80 BP; 17 A; 18 C; 19 G; 0 T; 26 other;
ccuguugcca caaacccgua gauccgaacu ugugguauua guccgcacaa gcuugugucu 60
auagguaugu gucuuuuagg 80
//
ID mml-mir-101-1 standard; RNA; MML; 75 BP.
XX
AC MI0002723;
XX
DE Macaca mulatta miR-101-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315134; MIR101-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..32
FT /accession="MIMAT0026581"
FT /product="mml-miR-101-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 47..68
FT /accession="MIMAT0002431"
FT /product="mml-miR-101-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000103"
XX
SQ Sequence 75 BP; 19 A; 16 C; 19 G; 0 T; 21 other;
ugcccuggcu caguuaucac agugcugaug cuguccauuc uaaagguaca guacugugau 60
aacugaagga uggca 75
//
ID mml-mir-103-1 standard; RNA; MML; 78 BP.
XX
AC MI0002743;
XX
DE Macaca mulatta miR-103-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315593; MIR103-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..33
FT /accession="MIMAT0026582"
FT /product="mml-miR-103-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 48..70
FT /accession="MIMAT0002447"
FT /product="mml-miR-103-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000109"
XX
SQ Sequence 78 BP; 16 A; 18 C; 20 G; 0 T; 24 other;
uacugcccuc ggcuucuuua cagugcugcc uuguugcaua uggaucaagc agcauuguac 60
agggcuauga aggcauug 78
//
ID mml-mir-105-1 standard; RNA; MML; 81 BP.
XX
AC MI0002750;
XX
DE Macaca mulatta miR-105-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315135; MIR105-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0002454"
FT /product="mml-miR-105-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000111"
FT miRNA 51..72
FT /accession="MIMAT0026583"
FT /product="mml-miR-105-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 81 BP; 14 A; 19 C; 24 G; 0 T; 24 other;
ugugcaucgu ggucaaaugc ucagacuccu gugguggcug cucaugcacc acggauguuu 60
gagcaugugc uacggugucu a 81
//
ID mml-mir-107 standard; RNA; MML; 81 BP.
XX
AC MI0002754;
XX
DE Macaca mulatta miR-107 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315478; MIR107.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0026584"
FT /product="mml-miR-107-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 50..72
FT /accession="MIMAT0002458"
FT /product="mml-miR-107-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000114"
XX
SQ Sequence 81 BP; 18 A; 19 C; 19 G; 0 T; 25 other;
cucucugcuu ucagcuucuu uacaguguug ccuuguggca uggaguucaa gcagcauugu 60
acagggcuau caaagcacag a 81
//
ID mml-mir-124a-1 standard; RNA; MML; 109 BP.
XX
AC MI0002766;
XX
DE Macaca mulatta miR-124a-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315490; MIR124A-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..46
FT /accession="MIMAT0026585"
FT /product="mml-miR-124a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 61..82
FT /accession="MIMAT0002470"
FT /product="mml-miR-124a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000444"
XX
SQ Sequence 109 BP; 29 A; 28 C; 28 G; 0 T; 24 other;
aucaagauca gaggcucugc ccuccguguu cacagcggac cuugauuuaa ugucauacaa 60
uuaaggcacg cggugaaugc caagagcgga gccuacggcu gcacuugaa 109
//
ID mml-mir-181c standard; RNA; MML; 110 BP.
XX
AC MI0002811;
XX
DE Macaca mulatta miR-181c stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315138; MIR181C.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..48
FT /accession="MIMAT0002509"
FT /product="mml-miR-181c-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000271"
FT miRNA 67..87
FT /accession="MIMAT0026587"
FT /product="mml-miR-181c-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 110 BP; 24 A; 27 C; 34 G; 0 T; 25 other;
cggagaauuu gccaaggguu ugggggaaca uucaaccugu cggugaguuu gggcagcuca 60
ggcaaaccau cgaccguuga guggacccug agaccuggac uugccauccu 110
//
ID mml-mir-199a-1 standard; RNA; MML; 110 BP.
XX
AC MI0002834;
XX
DE Macaca mulatta miR-199a-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315491; MIR199A-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..53
FT /accession="MIMAT0002531"
FT /product="mml-miR-199a"
FT /evidence=not_experimental
FT /similarity="MI0000281"
XX
SQ Sequence 110 BP; 25 A; 27 C; 32 G; 0 T; 26 other;
aggaagcuuc uggagauccu gcuccgucgc cccaguguuc agacuaccug uucaggacaa 60
ugccguugua caguagucug cacauugguu agacugggca agggagagca 110
//
ID mml-mir-214 standard; RNA; MML; 110 BP.
XX
AC MI0002858;
XX
DE Macaca mulatta miR-214 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315140; MIR214.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..51
FT /accession="MIMAT0026588"
FT /product="mml-miR-214-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 71..91
FT /accession="MIMAT0002555"
FT /product="mml-miR-214-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000290"
XX
SQ Sequence 110 BP; 25 A; 34 C; 28 G; 0 T; 23 other;
ggccuggcug gacagaguug ucaugugucu gccugucuac acuugcugug cagaacaucc 60
gcucaccugu acagcaggca cagacaggca gucacaugac aacccagccu 110
//
ID mml-mir-218-2 standard; RNA; MML; 110 BP.
XX
AC MI0002880;
XX
DE Macaca mulatta miR-218-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315141; MIR218-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0002574"
FT /product="mml-miR-218-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000295"
FT miRNA 68..88
FT /accession="MIMAT0026589"
FT /product="mml-miR-218-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 110 BP; 23 A; 29 C; 32 G; 0 T; 26 other;
gaccagucgc ugcggggcuu uccuuugugc uugaucuaac cauguggugg aacgauggaa 60
acggaacaug guucugucaa gcaccgcgga aagcaccgug cucuccugca 110
//
ID mml-mir-219-1 standard; RNA; MML; 110 BP.
XX
AC MI0002884;
XX
DE Macaca mulatta miR-219-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315492; MIR219-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0002575"
FT /product="mml-miR-219"
FT /evidence=not_experimental
FT /similarity="MI0000296"
XX
SQ Sequence 110 BP; 17 A; 40 C; 34 G; 0 T; 19 other;
ccgccccggg ccgcggcucc ugauugucca aacgcaauuc ucgagucuau ggcucuggcc 60
gagaguugag ucuggacguc ccgagccgcc gcccccaaac cucgaggggg 110
//
ID mml-mir-221 standard; RNA; MML; 110 BP.
XX
AC MI0002892;
XX
DE Macaca mulatta miR-221 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315142; MIR221.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..50
FT /accession="MIMAT0026590"
FT /product="mml-miR-221-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 65..87
FT /accession="MIMAT0002583"
FT /product="mml-miR-221-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000298"
XX
SQ Sequence 110 BP; 25 A; 24 C; 28 G; 0 T; 33 other;
ugaacaucca ggucuggggc augaaccugg cauacaaugu agauuucugu guucguuagg 60
caacagcuac auugucugcu ggguuucagg cuaccuggaa acauguucuc 110
//
ID mml-mir-224 standard; RNA; MML; 81 BP.
XX
AC MI0002903;
XX
DE Macaca mulatta miR-224 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315143; MIR224.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0002594"
FT /product="mml-miR-224-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000301"
FT miRNA 56..76
FT /accession="MIMAT0026591"
FT /product="mml-miR-224-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 81 BP; 19 A; 16 C; 20 G; 0 T; 26 other;
gggcuuucaa gucacuagug guuccguuua guagaugauu gugcauuguu ucaaaauggu 60
gcccuaguga cuacaaagcc c 81
//
ID mml-mir-181a-1 standard; RNA; MML; 110 BP.
XX
AC MI0002931;
XX
DE Macaca mulatta miR-181a-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315493; MIR181A-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0002506"
FT /product="mml-miR-181a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000289"
FT miRNA 64..85
FT /accession="MIMAT0002622"
FT /product="mml-miR-181a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000289"
XX
SQ Sequence 110 BP; 30 A; 24 C; 22 G; 0 T; 34 other;
ugaguuuuga gguugcuuca gugaacauuc aacgcugucg gugaguuugg aauuaaaauc 60
aaaaccaucg accguugauu guacccuaug gcuaaccauc aucuacucca 110
//
ID mml-mir-181b-1 standard; RNA; MML; 110 BP.
XX
AC MI0002932;
XX
DE Macaca mulatta miR-181b-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315384; MIR181B-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 36..59
FT /accession="MIMAT0002623"
FT /product="mml-miR-181b-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000270"
FT miRNA 79..97
FT /accession="MIMAT0026592"
FT /product="mml-miR-181b-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 110 BP; 30 A; 23 C; 25 G; 0 T; 32 other;
ccugugcaga gauuauuuuu uaaaagguca caaucaacau ucauugcugu cgguggguug 60
aacuguguag acaagcucac ugaacaauga augcaacugu ggccccgcuu 110
//
ID mml-mir-16-1 standard; RNA; MML; 89 BP.
XX
AC MI0002958;
XX
DE Macaca mulatta miR-16-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315146; MIR16-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002651"
FT /product="mml-miR-16-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000070"
FT miRNA 56..78
FT /accession="MIMAT0026594"
FT /product="mml-miR-16-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 89 BP; 26 A; 16 C; 20 G; 0 T; 27 other;
gucagcagug ccuuagcagc acguaaauau uggcguuaag auucuaaaau uaucuccagu 60
auuaacugug cugcugaagu aagguugac 89
//
ID mml-mir-17 standard; RNA; MML; 84 BP.
XX
AC MI0003001;
XX
DE Macaca mulatta miR-17 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315147; MIR17.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..37
FT /accession="MIMAT0002700"
FT /product="mml-miR-17-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT /similarity="MI0000071"
FT miRNA 51..70
FT /accession="MIMAT0002701"
FT /product="mml-miR-17-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT /similarity="MI0000071"
XX
SQ Sequence 84 BP; 24 A; 13 C; 23 G; 0 T; 24 other;
gucagaauaa ugucaaagug cuuacagugc agguagugau augugcaucu acugcaguga 60
aggcacuugu agcauuaugg ugac 84
//
ID mml-mir-18a standard; RNA; MML; 71 BP.
XX
AC MI0003002;
XX
DE Macaca mulatta miR-18 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315148; MIR18.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0002702"
FT /product="mml-miR-18a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000072"
FT miRNA 47..70
FT /accession="MIMAT0026595"
FT /product="mml-miR-18a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 71 BP; 17 A; 15 C; 17 G; 0 T; 22 other;
uguucuaagg ugcaucuagu gcagauagug aaguagauua gcaucuacug cccuaagugc 60
uccuucuggc a 71
//
ID mml-mir-20a standard; RNA; MML; 71 BP.
XX
AC MI0003004;
XX
DE Macaca mulatta miR-20a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315385; MIR20A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0002704"
FT /product="mml-miR-20a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000076"
FT miRNA 44..66
FT /accession="MIMAT0026597"
FT /product="mml-miR-20a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 71 BP; 20 A; 11 C; 16 G; 0 T; 24 other;
guagcacuaa agugcuuaua gugcagguag uguuuaguua ucuacugcau uaugagcacu 60
uaaaguacug c 71
//
ID mml-mir-19b-1 standard; RNA; MML; 87 BP.
XX
AC MI0003005;
XX
DE Macaca mulatta miR-19b-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315594; MIR19B-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..76
FT /accession="MIMAT0002705"
FT /product="mml-miR-19b"
FT /evidence=not_experimental
FT /similarity="MI0000074"
XX
SQ Sequence 87 BP; 18 A; 16 C; 22 G; 0 T; 31 other;
cacuguucua ugguuaguuu ugcagguuug cauccagcug ugugauauuc ugcugugcaa 60
auccaugcaa aacugacugu gguagug 87
//
ID mml-mir-92a-1 standard; RNA; MML; 78 BP.
XX
AC MI0003006;
XX
DE Macaca mulatta miR-92a-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315494; MIR92A-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 48..69
FT /accession="MIMAT0002706"
FT /product="mml-miR-92a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT /similarity="MI0000093"
XX
SQ Sequence 78 BP; 10 A; 15 C; 23 G; 0 T; 30 other;
cuuucuacac agguugggau cgguugcaau gcuguguuuc uguaugguau ugcacuuguc 60
ccggccuguu gaguuugg 78
//
ID mml-mir-27a standard; RNA; MML; 78 BP.
XX
AC MI0003052;
XX
DE Macaca mulatta miR-27a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315576; MIR27A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0026600"
FT /product="mml-miR-27a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 51..72
FT /accession="MIMAT0002753"
FT /product="mml-miR-27a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000085"
XX
SQ Sequence 78 BP; 15 A; 23 C; 24 G; 0 T; 16 other;
cugaggagca gggcuuagcu gcuugugagc aggguccaca ccaagucgug uucacagugg 60
cuaaguuccg ccccccag 78
//
ID mml-mir-106b standard; RNA; MML; 82 BP.
XX
AC MI0003073;
XX
DE Macaca mulatta miR-106b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315153; MIR106B.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0002772"
FT /product="mml-miR-106b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000734"
FT miRNA 51..72
FT /accession="MIMAT0026601"
FT /product="mml-miR-106b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 82 BP; 13 A; 23 C; 26 G; 0 T; 20 other;
ccugcugggg cuaaagugcu gacagugcag auaguggucc ucuccgugcu accgcacugu 60
ggguacuugc ugcuccagca gg 82
//
ID mml-mir-93 standard; RNA; MML; 80 BP.
XX
AC MI0003074;
XX
DE Macaca mulatta miR-93 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315154; MIR93.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0002773"
FT /product="mml-miR-93-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000095"
FT miRNA 50..71
FT /accession="MIMAT0026602"
FT /product="mml-miR-93-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 80 BP; 15 A; 24 C; 23 G; 0 T; 18 other;
cugggggcuc caaagugcug uucgugcagg uagugugauu aaccgaccua cugcugagcu 60
agcacuuccc gagcccccag 80
//
ID mml-mir-25 standard; RNA; MML; 84 BP.
XX
AC MI0003075;
XX
DE Macaca mulatta miR-25 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315439; MIR25.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..73
FT /accession="MIMAT0002774"
FT /product="mml-miR-25"
FT /evidence=not_experimental
FT /similarity="MI0000082"
XX
SQ Sequence 84 BP; 12 A; 22 C; 31 G; 0 T; 19 other;
ggccaguguu gagaggcgga gacuugggca auugcuggac gcugcccugg gcauugcacu 60
ugucucgguc ugacagugcc ggcc 84
//
ID mml-mir-183 standard; RNA; MML; 110 BP.
XX
AC MI0003084;
XX
DE Macaca mulatta miR-183 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315155; MIR183.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..49
FT /accession="MIMAT0002783"
FT /product="mml-miR-183-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000273"
FT miRNA 66..88
FT /accession="MIMAT0026603"
FT /product="mml-miR-183-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 110 BP; 32 A; 26 C; 29 G; 0 T; 23 other;
ccgcagaacg ugacuccugu ucuguguaug gcacugguag aauucacugu gaacagucuc 60
ggucagugaa uuaccgaagg gccauaaaca gagcagagac agauccacga 110
//
ID mml-mir-106a standard; RNA; MML; 81 BP.
XX
AC MI0003107;
XX
DE Macaca mulatta miR-106a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315496; MIR106A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..36
FT /accession="MIMAT0002798"
FT /product="mml-miR-106a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000113"
FT miRNA 49..71
FT /accession="MIMAT0026604"
FT /product="mml-miR-106a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 81 BP; 21 A; 18 C; 17 G; 0 T; 25 other;
ccuuggccau guaaaagugc uuacagugca gguagcuuuu ugagaucuac ugcaaugcaa 60
gcacuucuua cauuaccaug g 81
//
ID hsa-mir-488 standard; RNA; HSA; 83 BP.
XX
AC MI0003123;
XX
DE Homo sapiens miR-488 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32073; MIR488.
DR ENTREZGENE; 574441; MIR488.
XX
CC miR-488-3p cloned in [2] has a 1 nt 3' extension (U), which is
CC incompatible with the genome sequence.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0002804"
FT /product="hsa-miR-488-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1]"
FT miRNA 52..72
FT /accession="MIMAT0004763"
FT /product="hsa-miR-488-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 83 BP; 24 A; 19 C; 14 G; 0 T; 26 other;
gagaaucauc ucucccagau aauggcacuc ucaaacaagu uuccaaauug uuugaaaggc 60
uauuucuugg ucagaugacu cuc 83
//
ID hsa-mir-490 standard; RNA; HSA; 128 BP.
XX
AC MI0003125;
XX
DE Homo sapiens miR-490 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 18230126.
RA Afanasyeva EA, Hotz-Wagenblatt A, Glatting KH, Westermann F;
RT "New miRNAs cloned from neuroblastoma";
RL BMC Genomics. 9:52(2008).
XX
DR HGNC; 32075; MIR490.
DR ENTREZGENE; 574443; MIR490.
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..58
FT /accession="MIMAT0004764"
FT /product="hsa-miR-490-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT miRNA 76..97
FT /accession="MIMAT0002806"
FT /product="hsa-miR-490-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1]"
XX
SQ Sequence 128 BP; 29 A; 30 C; 36 G; 0 T; 33 other;
uggaggccuu gcugguuugg aaaguucauu guucgacacc auggaucucc agguggguca 60
aguuuagaga ugcaccaacc uggaggacuc caugcuguug agcuguucac aagcagcgga 120
cacuucca 128
//
ID hsa-mir-491 standard; RNA; HSA; 84 BP.
XX
AC MI0003126;
XX
DE Homo sapiens miR-491 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 32076; MIR491.
DR ENTREZGENE; 574444; MIR491.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0002807"
FT /product="hsa-miR-491-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2-3]"
FT miRNA 50..71
FT /accession="MIMAT0004765"
FT /product="hsa-miR-491-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 84 BP; 17 A; 19 C; 24 G; 0 T; 24 other;
uugacuuagc uggguagugg ggaacccuuc caugaggagu agaacacucc uuaugcaaga 60
uucccuucua ccuggcuggg uugg 84
//
ID hsa-mir-511 standard; RNA; HSA; 87 BP.
XX
AC MI0003127;
XX
DE Homo sapiens miR-511 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 32077; MIR511-1.
DR ENTREZGENE; 574445; MIR511-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0002808"
FT /product="hsa-miR-511-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], Illumina [2]"
FT miRNA 54..73
FT /accession="MIMAT0026606"
FT /product="hsa-miR-511-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 87 BP; 24 A; 15 C; 19 G; 0 T; 29 other;
caauagacac ccaucguguc uuuugcucug cagucaguaa auauuuuuuu gugaaugugu 60
agcaaaagac agaauggugg uccauug 87
//
ID hsa-mir-146b standard; RNA; HSA; 73 BP.
XX
AC MI0003129;
XX
DE Homo sapiens miR-146b stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32079; MIR146B.
DR ENTREZGENE; 574447; MIR146B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0002809"
FT /product="hsa-miR-146b-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
FT miRNA 46..67
FT /accession="MIMAT0004766"
FT /product="hsa-miR-146b-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 73 BP; 14 A; 20 C; 21 G; 0 T; 18 other;
ccuggcacug agaacugaau uccauaggcu gugagcucua gcaaugcccu guggacucag 60
uucuggugcc cgg 73
//
ID hsa-mir-202 standard; RNA; HSA; 110 BP.
XX
AC MI0003130;
XX
DE Homo sapiens miR-202 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32080; MIR202.
DR ENTREZGENE; 574448; MIR202.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..49
FT /accession="MIMAT0002810"
FT /product="hsa-miR-202-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
FT miRNA 64..83
FT /accession="MIMAT0002811"
FT /product="hsa-miR-202-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000245"
XX
SQ Sequence 110 BP; 20 A; 32 C; 32 G; 0 T; 26 other;
cgccucagag ccgcccgccg uuccuuuuuc cuaugcauau acuucuuuga ggaucuggcc 60
uaaagaggua uagggcaugg gaaaacgggg cggucggguc cuccccagcg 110
//
ID hsa-mir-493 standard; RNA; HSA; 89 BP.
XX
AC MI0003132;
XX
DE Homo sapiens miR-493 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32082; MIR493.
DR ENTREZGENE; 574450; MIR493.
XX
CC The mature miRNA sequences were named miR-493-5p and miR-493-3p in [1,2]
CC and here. Landgraf et al. showed that the 3' product is the predominant
CC one [3]. The mature sequence shown here represents the most commonly
CC cloned form from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0002813"
FT /product="hsa-miR-493-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2-3]"
FT miRNA 57..78
FT /accession="MIMAT0003161"
FT /product="hsa-miR-493-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
XX
SQ Sequence 89 BP; 13 A; 23 C; 25 G; 0 T; 28 other;
cuggccucca gggcuuugua caugguaggc uuucauucau ucguuugcac auucggugaa 60
ggucuacugu gugccaggcc cugugccag 89
//
ID hsa-mir-494 standard; RNA; HSA; 81 BP.
XX
AC MI0003134;
XX
DE Homo sapiens miR-494 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 32084; MIR494.
DR ENTREZGENE; 574452; MIR494.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0026607"
FT /product="hsa-miR-494-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 48..69
FT /accession="MIMAT0002816"
FT /product="hsa-miR-494-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2-3], Illumina [4]"
XX
SQ Sequence 81 BP; 20 A; 14 C; 17 G; 0 T; 30 other;
gauacucgaa ggagagguug uccguguugu cuucucuuua uuuaugauga aacauacacg 60
ggaaaccucu uuuuuaguau c 81
//
ID hsa-mir-495 standard; RNA; HSA; 82 BP.
XX
AC MI0003135;
XX
DE Homo sapiens miR-495 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 22282338.
RA Voellenkle C, Rooij Jv, Guffanti A, Brini E, Fasanaro P, Isaia E, Croft L,
RA David M, Capogrossi MC, Moles A, Felsani A, Martelli F;
RT "Deep-sequencing of endothelial cells exposed to hypoxia reveals the
RT complexity of known and novel microRNAs";
RL RNA. 18:472-484(2012).
XX
DR HGNC; 32085; MIR495.
DR ENTREZGENE; 574453; MIR495.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0022924"
FT /product="hsa-miR-495-5p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
FT miRNA 50..71
FT /accession="MIMAT0002817"
FT /product="hsa-miR-495-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2], SOLiD [3]"
XX
SQ Sequence 82 BP; 22 A; 15 C; 16 G; 0 T; 29 other;
ugguaccuga aaagaaguug cccauguuau uuucgcuuua uaugugacga aacaaacaug 60
gugcacuucu uuuucgguau ca 82
//
ID hsa-mir-193b standard; RNA; HSA; 83 BP.
XX
AC MI0003137;
XX
DE Homo sapiens miR-193b stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 32087; MIR193B.
DR ENTREZGENE; 574455; MIR193B.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0004767"
FT /product="hsa-miR-193b-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT miRNA 51..72
FT /accession="MIMAT0002819"
FT /product="hsa-miR-193b-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2-4]"
XX
SQ Sequence 83 BP; 15 A; 16 C; 25 G; 0 T; 27 other;
guggucucag aaucgggguu uugagggcga gaugaguuua uguuuuaucc aacuggcccu 60
caaagucccg cuuuuggggu cau 83
//
ID hsa-mir-181d standard; RNA; HSA; 137 BP.
XX
AC MI0003139;
XX
DE Homo sapiens miR-181d stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 32089; MIR181D.
DR ENTREZGENE; 574457; MIR181D.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 36..58
FT /accession="MIMAT0002821"
FT /product="hsa-miR-181d-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2], Illumina [3]"
FT miRNA 79..99
FT /accession="MIMAT0026608"
FT /product="hsa-miR-181d-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 137 BP; 29 A; 36 C; 46 G; 0 T; 26 other;
guccccuccc cuaggccaca gccgagguca caaucaacau ucauuguugu cgguggguug 60
ugaggacuga ggccagaccc accgggggau gaaugucacu guggcugggc cagacacggc 120
uuaaggggaa uggggac 137
//
ID hsa-mir-512-1 standard; RNA; HSA; 84 BP.
XX
AC MI0003140;
XX
DE Homo sapiens miR-512-1 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32090; MIR512-1.
DR ENTREZGENE; 574458; MIR512-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0002822"
FT /product="hsa-miR-512-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1]"
FT miRNA 51..72
FT /accession="MIMAT0002823"
FT /product="hsa-miR-512-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
XX
SQ Sequence 84 BP; 18 A; 19 C; 25 G; 0 T; 22 other;
ucucagucug uggcacucag ccuugagggc acuuucuggu gccagaauga aagugcuguc 60
auagcugagg uccaaugacu gagg 84
//
ID hsa-mir-512-2 standard; RNA; HSA; 98 BP.
XX
AC MI0003141;
XX
DE Homo sapiens miR-512-2 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32091; MIR512-2.
DR ENTREZGENE; 574459; MIR512-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0002822"
FT /product="hsa-miR-512-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1]"
FT miRNA 57..78
FT /accession="MIMAT0002823"
FT /product="hsa-miR-512-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
XX
SQ Sequence 98 BP; 21 A; 24 C; 29 G; 0 T; 24 other;
gguacuucuc agucuguggc acucagccuu gagggcacuu ucuggugcca gaaugaaagu 60
gcugucauag cugaggucca augacugagg cgagcacc 98
//
ID hsa-mir-519c standard; RNA; HSA; 87 BP.
XX
AC MI0003148;
XX
DE Homo sapiens miR-519c stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32098; MIR519C.
DR ENTREZGENE; 574466; MIR519C.
XX
CC The 5' arm of this precursor expresses a product related to miR-526
CC (previously named miR-526c here). Landgraf et al. confirm mature miRNA
CC expression from both arms of the precursor [2], leading to the -5p, -3p
CC designations. The mature sequence shown here represents the most commonly
CC cloned form from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0002831"
FT /product="hsa-miR-519c-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
FT miRNA 54..75
FT /accession="MIMAT0002832"
FT /product="hsa-miR-519c-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1]"
XX
SQ Sequence 87 BP; 24 A; 15 C; 22 G; 0 T; 26 other;
ucucagccug ugacccucua gagggaagcg cuuucuguug ucugaaagaa aagaaagugc 60
aucuuuuuag aggauuacag uuugaga 87
//
ID hsa-mir-520a standard; RNA; HSA; 85 BP.
XX
AC MI0003149;
XX
DE Homo sapiens miR-520a stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32099; MIR520A.
DR ENTREZGENE; 574467; MIR520A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0002833"
FT /product="hsa-miR-520a-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
FT miRNA 53..74
FT /accession="MIMAT0002834"
FT /product="hsa-miR-520a-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1]"
XX
SQ Sequence 85 BP; 18 A; 17 C; 24 G; 0 T; 26 other;
cucaggcugu gacccuccag agggaaguac uuucuguugu cugagagaaa agaaagugcu 60
ucccuuugga cuguuucggu uugag 85
//
ID hsa-mir-526b standard; RNA; HSA; 83 BP.
XX
AC MI0003150;
XX
DE Homo sapiens miR-526b stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32100; MIR526B.
DR ENTREZGENE; 574468; MIR526B.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0002835"
FT /product="hsa-miR-526b-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
FT miRNA 51..72
FT /accession="MIMAT0002836"
FT /product="hsa-miR-526b-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
XX
SQ Sequence 83 BP; 19 A; 16 C; 22 G; 0 T; 26 other;
ucaggcugug acccucuuga gggaagcacu uucuguuguc ugaaagaaga gaaagugcuu 60
ccuuuuagag gcuuacuguc uga 83
//
ID hsa-mir-519b standard; RNA; HSA; 81 BP.
XX
AC MI0003151;
XX
DE Homo sapiens miR-519b stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32101; MIR519B.
DR ENTREZGENE; 574469; MIR519B.
XX
CC The 5' arm of this precursor expresses a product related to miR-526
CC (previously named miR-526c here). Landgraf et al. confirm mature miRNA
CC expression from both arms of the precursor [2], leading to the -5p, -3p
CC designations. The mature sequence shown here represents the most commonly
CC cloned form from large-scale cloning studies [2]. The mature sequence
CC shown here represents the most commonly cloned form from large-scale
CC cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0005454"
FT /product="hsa-miR-519b-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
FT miRNA 51..72
FT /accession="MIMAT0002837"
FT /product="hsa-miR-519b-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
XX
SQ Sequence 81 BP; 20 A; 14 C; 21 G; 0 T; 26 other;
caugcuguga cccucuagag ggaagcgcuu ucuguugucu gaaagaaaag aaagugcauc 60
cuuuuagagg uuuacuguuu g 81
//
ID hsa-mir-523 standard; RNA; HSA; 87 BP.
XX
AC MI0003153;
XX
DE Homo sapiens miR-523 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32103; MIR523.
DR ENTREZGENE; 574471; MIR523.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0005449"
FT /product="hsa-miR-523-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
FT miRNA 53..75
FT /accession="MIMAT0002840"
FT /product="hsa-miR-523-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
XX
SQ Sequence 87 BP; 21 A; 20 C; 22 G; 0 T; 24 other;
ucucaugcug ugacccucua gagggaagcg cuuucuguug ucugaaagaa aagaacgcgc 60
uucccuauag aggguuaccc uuugaga 87
//
ID hsa-mir-518f standard; RNA; HSA; 87 BP.
XX
AC MI0003154;
XX
DE Homo sapiens miR-518f stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32104; MIR518F.
DR ENTREZGENE; 574472; MIR518F.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0002841"
FT /product="hsa-miR-518f-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
FT miRNA 53..73
FT /accession="MIMAT0002842"
FT /product="hsa-miR-518f-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
XX
SQ Sequence 87 BP; 24 A; 18 C; 18 G; 0 T; 27 other;
ucucaugcug ugacccucua gagggaagca cuuucucuug ucuaaaagaa aagaaagcgc 60
uucucuuuag aggauuacuc uuugaga 87
//
ID hsa-mir-520b standard; RNA; HSA; 61 BP.
XX
AC MI0003155;
XX
DE Homo sapiens miR-520b stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 25822230.
RA Asikainen S, Heikkinen L, Juhila J, Holm F, Weltner J, Trokovic R, Mikkola
RA M, Toivonen S, Balboa D, Lampela R, Icay K, Tuuri T, Otonkoski T, Wong G,
RA Hovatta O;
RT "Selective microRNA-Offset RNA expression in human embryonic stem cells";
RL PLoS One. 10:e0116668(2015).
XX
DR HGNC; 32105; MIR520B.
DR ENTREZGENE; 574473; MIR520B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..22
FT /accession="MIMAT0037325"
FT /product="hsa-miR-520b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 41..61
FT /accession="MIMAT0002843"
FT /product="hsa-miR-520b-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1]"
XX
SQ Sequence 61 BP; 16 A; 12 C; 16 G; 0 T; 17 other;
cccucuacag ggaagcgcuu ucuguugucu gaaagaaaag aaagugcuuc cuuuuagagg 60
g 61
//
ID hsa-mir-520c standard; RNA; HSA; 87 BP.
XX
AC MI0003158;
XX
DE Homo sapiens miR-520c stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32108; MIR520C.
DR ENTREZGENE; 574476; MIR520C.
XX
CC The 5' arm of this precursor expresses a product related to miR-526
CC (previously named miR-526c here). Landgraf et al. confirm mature miRNA
CC expression from both arms of the precursor [2], leading to the -5p, -3p
CC designations. The mature sequence shown here represents the most commonly
CC cloned form from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0005455"
FT /product="hsa-miR-520c-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
FT miRNA 54..75
FT /accession="MIMAT0002846"
FT /product="hsa-miR-520c-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
XX
SQ Sequence 87 BP; 21 A; 16 C; 23 G; 0 T; 27 other;
ucucaggcug ucguccucua gagggaagca cuuucuguug ucugaaagaa aagaaagugc 60
uuccuuuuag aggguuaccg uuugaga 87
//
ID hsa-mir-518c standard; RNA; HSA; 101 BP.
XX
AC MI0003159;
XX
DE Homo sapiens miR-518c stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32109; MIR518C.
DR ENTREZGENE; 574477; MIR518C.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0002847"
FT /product="hsa-miR-518c-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1]"
FT miRNA 62..84
FT /accession="MIMAT0002848"
FT /product="hsa-miR-518c-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
XX
SQ Sequence 101 BP; 28 A; 18 C; 27 G; 0 T; 28 other;
gcgagaagau cucaugcugu gacucucugg agggaagcac uuucuguugu cugaaagaaa 60
acaaagcgcu ucucuuuaga guguuacggu uugagaaaag c 101
//
ID hsa-mir-518e standard; RNA; HSA; 88 BP.
XX
AC MI0003169;
XX
DE Homo sapiens miR-518e stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32119; MIR518E.
DR ENTREZGENE; 574487; MIR518E.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0005450"
FT /product="hsa-miR-518e-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
FT miRNA 54..74
FT /accession="MIMAT0002861"
FT /product="hsa-miR-518e-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
XX
SQ Sequence 88 BP; 23 A; 19 C; 23 G; 0 T; 23 other;
ucucaggcug ugacccucua gagggaagcg cuuucuguug gcuaaaagaa aagaaagcgc 60
uucccuucag aguguuaacg cuuugaga 88
//
ID hsa-mir-518a-1 standard; RNA; HSA; 85 BP.
XX
AC MI0003170;
XX
DE Homo sapiens miR-518a-1 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32120; MIR518A1.
DR ENTREZGENE; 574488; MIR518A1.
XX
CC The 5' mature product was previously named miR-527 in [1] and here.
CC Landgraf et al. showed that products from both arms are approximately
CC equally expressed [2]. miR-527 is renamed miR-518a-5p here. The mature
CC sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [2]. The 5' end of the miRNA may be offset
CC with respect to previous annotations. miR-518a-5p cloned in [2] has a 1
CC nt 3' extension (A), which is incompatible with the genome sequence.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..33
FT /accession="MIMAT0005457"
FT /product="hsa-miR-518a-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
FT miRNA 51..72
FT /accession="MIMAT0002863"
FT /product="hsa-miR-518a-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
XX
SQ Sequence 85 BP; 21 A; 17 C; 23 G; 0 T; 24 other;
ucucaagcug ugacugcaaa gggaagcccu uucuguuguc ugaaagaaga gaaagcgcuu 60
cccuuugcug gauuacgguu ugaga 85
//
ID hsa-mir-518a-2 standard; RNA; HSA; 87 BP.
XX
AC MI0003173;
XX
DE Homo sapiens miR-518a-2 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32123; MIR518A2.
DR ENTREZGENE; 574491; MIR518A2.
XX
CC The 5' mature product was previously named miR-527 in [1] and here.
CC Landgraf et al. showed that products from both arms are approximately
CC equally expressed [2]. miR-527 is renamed miR-518a-5p here. The mature
CC sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [2]. The 5' end of the miRNA may be offset
CC with respect to previous annotations. miR-518a-5p cloned in [2] has a 1
CC nt 3' extension (A), which is incompatible with the genome sequence.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..35
FT /accession="MIMAT0005457"
FT /product="hsa-miR-518a-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1]"
FT miRNA 53..74
FT /accession="MIMAT0002863"
FT /product="hsa-miR-518a-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
XX
SQ Sequence 87 BP; 21 A; 17 C; 24 G; 0 T; 25 other;
ucucaagcug ugggucugca aagggaagcc cuuucuguug ucuaaaagaa gagaaagcgc 60
uucccuuugc uggauuacgg uuugaga 87
//
ID hsa-mir-522 standard; RNA; HSA; 87 BP.
XX
AC MI0003177;
XX
DE Homo sapiens miR-522 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 32127; MIR522.
DR ENTREZGENE; 574495; MIR522.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0005451"
FT /product="hsa-miR-522-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
FT miRNA 54..75
FT /accession="MIMAT0002868"
FT /product="hsa-miR-522-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2-3]"
XX
SQ Sequence 87 BP; 21 A; 16 C; 23 G; 0 T; 27 other;
ucucaggcug ugucccucua gagggaagcg cuuucuguug ucugaaagaa aagaaaaugg 60
uucccuuuag aguguuacgc uuugaga 87
//
ID hsa-mir-519a-1 standard; RNA; HSA; 85 BP.
XX
AC MI0003178;
XX
DE Homo sapiens miR-519a-1 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32128; MIR519A1.
DR ENTREZGENE; 574496; MIR519A1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0005452"
FT /product="hsa-miR-519a-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
FT miRNA 53..74
FT /accession="MIMAT0002869"
FT /product="hsa-miR-519a-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
XX
SQ Sequence 85 BP; 21 A; 14 C; 24 G; 0 T; 26 other;
cucaggcugu gacacucuag agggaagcgc uuucuguugu cugaaagaaa ggaaagugca 60
uccuuuuaga guguuacugu uugag 85
//
ID hsa-mir-519a-2 standard; RNA; HSA; 87 BP.
XX
AC MI0003182;
XX
DE Homo sapiens miR-519a-2 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 25822230.
RA Asikainen S, Heikkinen L, Juhila J, Holm F, Weltner J, Trokovic R, Mikkola
RA M, Toivonen S, Balboa D, Lampela R, Icay K, Tuuri T, Otonkoski T, Wong G,
RA Hovatta O;
RT "Selective microRNA-Offset RNA expression in human embryonic stem cells";
RL PLoS One. 10:e0116668(2015).
XX
DR HGNC; 32132; MIR519A2.
DR ENTREZGENE; 574500; MIR519A2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0037327"
FT /product="hsa-miR-519a-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 54..75
FT /accession="MIMAT0002869"
FT /product="hsa-miR-519a-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
XX
SQ Sequence 87 BP; 20 A; 16 C; 23 G; 0 T; 28 other;
ucucaggcug ugucccucua cagggaagcg cuuucuguug ucugaaagaa aggaaagugc 60
auccuuuuag aguguuacug uuugaga 87
//
ID hsa-mir-499a standard; RNA; HSA; 122 BP.
XX
AC MI0003183;
XX
DE Homo sapiens miR-499a stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32133; MIR499.
DR ENTREZGENE; 574501; MIR499.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 33..53
FT /accession="MIMAT0002870"
FT /product="hsa-miR-499a-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
FT miRNA 70..91
FT /accession="MIMAT0004772"
FT /product="hsa-miR-499a-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 122 BP; 17 A; 39 C; 34 G; 0 T; 32 other;
gcccuguccc cugugccuug ggcgggcggc uguuaagacu ugcagugaug uuuaacuccu 60
cuccacguga acaucacagc aagucugugc ugcuucccgu cccuacgcug ccugggcagg 120
gu 122
//
ID hsa-mir-500a standard; RNA; HSA; 84 BP.
XX
AC MI0003184;
XX
DE Homo sapiens miR-500a stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32134; MIR500.
DR ENTREZGENE; 574502; MIR500A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0004773"
FT /product="hsa-miR-500a-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 52..73
FT /accession="MIMAT0002871"
FT /product="hsa-miR-500a-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
XX
SQ Sequence 84 BP; 17 A; 23 C; 24 G; 0 T; 20 other;
gcucccccuc ucuaauccuu gcuaccuggg ugagagugcu gucugaaugc aaugcaccug 60
ggcaaggauu cugagagcga gagc 84
//
ID hsa-mir-501 standard; RNA; HSA; 84 BP.
XX
AC MI0003185;
XX
DE Homo sapiens miR-501 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32135; MIR501.
DR ENTREZGENE; 574503; MIR501.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002872"
FT /product="hsa-miR-501-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
FT miRNA 51..72
FT /accession="MIMAT0004774"
FT /product="hsa-miR-501-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 84 BP; 15 A; 21 C; 24 G; 0 T; 24 other;
gcucuuccuc ucuaauccuu ugucccuggg ugagagugcu uucugaaugc aaugcacccg 60
ggcaaggauu cugagagggu gagc 84
//
ID hsa-mir-502 standard; RNA; HSA; 86 BP.
XX
AC MI0003186;
XX
DE Homo sapiens miR-502 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32136; MIR502.
DR ENTREZGENE; 574504; MIR502.
XX
CC Extensive cloning studies suggest that the 3' product may be the
CC predominant one [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0002873"
FT /product="hsa-miR-502-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1]"
FT miRNA 52..73
FT /accession="MIMAT0004775"
FT /product="hsa-miR-502-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 86 BP; 16 A; 23 C; 25 G; 0 T; 22 other;
ugcucccccu cucuaauccu ugcuaucugg gugcuagugc uggcucaaug caaugcaccu 60
gggcaaggau ucagagaggg ggagcu 86
//
ID hsa-mir-450a-2 standard; RNA; HSA; 100 BP.
XX
AC MI0003187;
XX
DE Homo sapiens miR-450a-2 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [3]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32137; MIR450A2.
DR ENTREZGENE; 574505; MIR450A2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0001545"
FT /product="hsa-miR-450a-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1,3], cloned [1,4]"
FT miRNA 58..79
FT /accession="MIMAT0031074"
FT /product="hsa-miR-450a-2-3p"
FT /evidence=not_experimental
XX
SQ Sequence 100 BP; 33 A; 11 C; 18 G; 0 T; 38 other;
ccaaagaaag augcuaaacu auuuuugcga uguguuccua auauguaaua uaaauguauu 60
ggggacauuu ugcauucaua guuuuguauc aauaauaugg 100
//
ID hsa-mir-503 standard; RNA; HSA; 71 BP.
XX
AC MI0003188;
XX
DE Homo sapiens miR-503 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 22282338.
RA Voellenkle C, Rooij Jv, Guffanti A, Brini E, Fasanaro P, Isaia E, Croft L,
RA David M, Capogrossi MC, Moles A, Felsani A, Martelli F;
RT "Deep-sequencing of endothelial cells exposed to hypoxia reveals the
RT complexity of known and novel microRNAs";
RL RNA. 18:472-484(2012).
XX
DR HGNC; 32138; MIR503.
DR ENTREZGENE; 574506; MIR503.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0002874"
FT /product="hsa-miR-503-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2-3], SOLiD [4]"
FT miRNA 46..68
FT /accession="MIMAT0022925"
FT /product="hsa-miR-503-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 71 BP; 11 A; 17 C; 25 G; 0 T; 18 other;
ugcccuagca gcgggaacag uucugcagug agcgaucggu gcucuggggu auuguuuccg 60
cugccagggu a 71
//
ID hsa-mir-504 standard; RNA; HSA; 83 BP.
XX
AC MI0003189;
XX
DE Homo sapiens miR-504 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 32139; MIR504.
DR ENTREZGENE; 574507; MIR504.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0002875"
FT /product="hsa-miR-504-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2], Illumina [3]"
FT miRNA 50..70
FT /accession="MIMAT0026612"
FT /product="hsa-miR-504-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 83 BP; 15 A; 19 C; 27 G; 0 T; 22 other;
gcugcuguug ggagacccug gucugcacuc uaucuguauu cuuacugaag ggagugcagg 60
gcaggguuuc ccauacagag ggc 83
//
ID hsa-mir-513a-1 standard; RNA; HSA; 129 BP.
XX
AC MI0003191;
XX
DE Homo sapiens miR-513a-1 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32141; MIR513A1.
DR ENTREZGENE; 574509; MIR513A1.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 37..54
FT /accession="MIMAT0002877"
FT /product="hsa-miR-513a-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
FT miRNA 72..94
FT /accession="MIMAT0004777"
FT /product="hsa-miR-513a-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 129 BP; 35 A; 27 C; 30 G; 0 T; 37 other;
gggaugccac auucagccau ucagcguaca gugccuuuca cagggaggug ucauuuaugu 60
gaacuaaaau auaaauuuca ccuuucugag aaggguaaug uacagcaugc acugcauaug 120
ugguguccc 129
//
ID hsa-mir-513a-2 standard; RNA; HSA; 127 BP.
XX
AC MI0003192;
XX
DE Homo sapiens miR-513a-2 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32142; MIR513A2.
DR ENTREZGENE; 574510; MIR513A2.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 36..53
FT /accession="MIMAT0002877"
FT /product="hsa-miR-513a-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
FT miRNA 71..93
FT /accession="MIMAT0004777"
FT /product="hsa-miR-513a-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 127 BP; 34 A; 25 C; 30 G; 0 T; 38 other;
ggaugccaca uucagccauu cagugugcag ugccuuucac agggaggugu cauuuaugug 60
aacuaaaaua uaaauuucac cuuucugaga aggguaaugu acagcaugca cugcauaugu 120
ggugucc 127
//
ID hsa-mir-506 standard; RNA; HSA; 124 BP.
XX
AC MI0003193;
XX
DE Homo sapiens miR-506 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
DR HGNC; 32143; MIR506.
DR ENTREZGENE; 574511; MIR506.
XX
FH Key Location/Qualifiers
FH
FT miRNA 35..56
FT /accession="MIMAT0022701"
FT /product="hsa-miR-506-5p"
FT /evidence=not_experimental
FT miRNA 71..91
FT /accession="MIMAT0002878"
FT /product="hsa-miR-506-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1]"
XX
SQ Sequence 124 BP; 35 A; 24 C; 28 G; 0 T; 37 other;
gccaccacca ucagccauac uauguguagu gccuuauuca ggaagguguu acuuaauaga 60
uuaauauuug uaaggcaccc uucugaguag aguaaugugc aacauggaca acauuugugg 120
uggc 124
//
ID hsa-mir-508 standard; RNA; HSA; 115 BP.
XX
AC MI0003195;
XX
DE Homo sapiens miR-508 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32145; MIR508.
DR ENTREZGENE; 574513; MIR508.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..48
FT /accession="MIMAT0004778"
FT /product="hsa-miR-508-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 61..83
FT /accession="MIMAT0002880"
FT /product="hsa-miR-508-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
XX
SQ Sequence 115 BP; 32 A; 26 C; 26 G; 0 T; 31 other;
ccaccuucag cugaguguag ugcccuacuc cagagggcgu cacucaugua aacuaaaaca 60
ugauuguagc cuuuuggagu agaguaauac acaucacgua acgcauauuu ggugg 115
//
ID hsa-mir-509-1 standard; RNA; HSA; 94 BP.
XX
AC MI0003196;
XX
DE Homo sapiens miR-509-1 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17573847.
RA Novotny GW, Nielsen JE, Sonne SB, Skakkebaek NE, Rajpert-De Meyts E,
RA Leffers H;
RT "Analysis of gene expression in normal and neoplastic human testis: new
RT roles of RNA";
RL Int J Androl. 30:316-326(2007).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32146; MIR509-1.
DR ENTREZGENE; 574514; MIR509-1.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The cloned miR-509-5p sequence from
CC [3] includes a 1 nt extension at the 3' end (A), which is incompatible
CC with the genome sequence.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..40
FT /accession="MIMAT0004779"
FT /product="hsa-miR-509-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 55..76
FT /accession="MIMAT0002881"
FT /product="hsa-miR-509-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2-3]"
XX
SQ Sequence 94 BP; 26 A; 16 C; 25 G; 0 T; 27 other;
caugcugugu gugguacccu acugcagaca guggcaauca uguauaauua aaaaugauug 60
guacgucugu ggguagagua cugcaugaca caug 94
//
ID hsa-mir-510 standard; RNA; HSA; 74 BP.
XX
AC MI0003197;
XX
DE Homo sapiens miR-510 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 32147; MIR510.
DR ENTREZGENE; 574515; MIR510.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0002882"
FT /product="hsa-miR-510-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2], Illumina [3]"
FT miRNA 47..67
FT /accession="MIMAT0026613"
FT /product="hsa-miR-510-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 74 BP; 22 A; 12 C; 21 G; 0 T; 19 other;
gugguguccu acucaggaga guggcaauca cauguaauua ggugugauug aaaccucuaa 60
gaguggagua acac 74
//
ID hsa-mir-514a-1 standard; RNA; HSA; 98 BP.
XX
AC MI0003198;
XX
DE Homo sapiens miR-514a-1 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32148; MIR514-1.
DR ENTREZGENE; 574516; MIR514-1.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0022702"
FT /product="hsa-miR-514a-5p"
FT /evidence=not_experimental
FT miRNA 59..79
FT /accession="MIMAT0002883"
FT /product="hsa-miR-514a-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
XX
SQ Sequence 98 BP; 29 A; 17 C; 22 G; 0 T; 30 other;
aacauguugu cugugguacc cuacucugga gagugacaau cauguauaau uaaauuugau 60
ugacacuucu gugaguagag uaacgcauga cacguacg 98
//
ID hsa-mir-514a-2 standard; RNA; HSA; 88 BP.
XX
AC MI0003199;
XX
DE Homo sapiens miR-514a-2 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32149; MIR514-2.
DR ENTREZGENE; 574517; MIR514-2.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0022702"
FT /product="hsa-miR-514a-5p"
FT /evidence=not_experimental
FT miRNA 54..74
FT /accession="MIMAT0002883"
FT /product="hsa-miR-514a-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
XX
SQ Sequence 88 BP; 25 A; 16 C; 20 G; 0 T; 27 other;
guugucugug guacccuacu cuggagagug acaaucaugu auaacuaaau uugauugaca 60
cuucugugag uagaguaacg caugacac 88
//
ID hsa-mir-514a-3 standard; RNA; HSA; 88 BP.
XX
AC MI0003200;
XX
DE Homo sapiens miR-514a-3 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32150; MIR514-3.
DR ENTREZGENE; 574518; MIR514-3.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0022702"
FT /product="hsa-miR-514a-5p"
FT /evidence=not_experimental
FT miRNA 54..74
FT /accession="MIMAT0002883"
FT /product="hsa-miR-514a-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2]"
XX
SQ Sequence 88 BP; 25 A; 16 C; 20 G; 0 T; 27 other;
guugucugug guacccuacu cuggagagug acaaucaugu auaacuaaau uugauugaca 60
cuucugugag uagaguaacg caugacac 88
//
ID hsa-mir-532 standard; RNA; HSA; 91 BP.
XX
AC MI0003205;
XX
DE Homo sapiens miR-532 stem-loop
XX
RN [1]
RA Lu DP, Read RL, Humphreys DT, Battah FM, Martin DIK, Rasko JEJ;
RT "PCR-based expression analysis and identification of microRNAs";
RL RNAi and Gene Silencing 1:44-49(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 32795; MIR532.
DR ENTREZGENE; 693124; MIR532.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0002888"
FT /product="hsa-miR-532-5p"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2-3]"
FT miRNA 57..78
FT /accession="MIMAT0004780"
FT /product="hsa-miR-532-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 91 BP; 18 A; 30 C; 19 G; 0 T; 24 other;
cgacuugcuu ucucuccucc augccuugag uguaggaccg uuggcaucuu aauuacccuc 60
ccacacccaa ggcuugcaga agagcgagcc u 91
//
ID mmu-mir-532 standard; RNA; MMU; 96 BP.
XX
AC MI0003206;
XX
DE Mus musculus miR-532 stem-loop
XX
RN [1]
RA Lu DP, Read RL, Humphreys DT, Battah FM, Martin DIK, Rasko JEJ;
RT "PCR-based expression analysis and identification of microRNAs";
RL RNAi and Gene Silencing 1:44-49(2005).
XX
RN [2]
RX PUBMED; 16973894.
RA Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP,
RA Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk
RA RH, Cuppen E, Mano H;
RT "Mouse microRNA profiles determined with a new and sensitive cloning
RT method";
RL Nucleic Acids Res. 34:e115(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629950; Mir532.
DR ENTREZGENE; 751544; Mir532.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0002889"
FT /product="mmu-miR-532-5p"
FT /evidence=experimental
FT /experiment="PCR [1], miRAP-cloned [2], cloned [3],
FT Illumina [4-5]"
FT miRNA 58..79
FT /accession="MIMAT0004781"
FT /product="mmu-miR-532-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 96 BP; 20 A; 29 C; 18 G; 0 T; 29 other;
cagauuugcu uuuucucuuc caugccuuga guguaggacc guugacaucu uaauuacccu 60
cccacaccca aggcuugcag gagagcaagc cuucuc 96
//
ID dre-mir-184-2 standard; RNA; DRE; 79 BP.
XX
AC MI0003243;
XX
DE Danio rerio miR-184-2 stem-loop
XX
DR ENTREZGENE; 100628777; mir184-2.
XX
CC This zebrafish miRNA sequence is predicted based on homology with a
CC verified mammalian sequence (Mihaela Zavolan, personal communication).
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..70
FT /accession="MIMAT0001853"
FT /product="dre-miR-184"
FT /evidence=not_experimental
FT /similarity="MI0002026"
XX
SQ Sequence 79 BP; 19 A; 20 C; 20 G; 0 T; 20 other;
cacaucuccu uaucacuuuu ccagcccagc uaacgauggu gaauccguug gacggagaac 60
ugauaagggc auguggcug 79
//
ID dre-let-7j standard; RNA; DRE; 83 BP.
XX
AC MI0003343;
XX
DE Danio rerio let-7j stem-loop
XX
DR ENTREZGENE; 100628938; mirlet7j.
XX
CC This zebrafish miRNA sequence is predicted based on homology with a
CC verified mammalian sequence (Mihaela Zavolan, personal communication).
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0003015"
FT /product="dre-let-7j"
FT /evidence=not_experimental
FT /similarity="MI0001874"
XX
SQ Sequence 83 BP; 15 A; 15 C; 22 G; 0 T; 31 other;
gguugaggua guuguuugua caguuuuuag ggucuguuau ucugcccugu uaaggagcua 60
acuguacaga cuacugccuu gcc 83
//
ID dre-mir-135b standard; RNA; DRE; 82 BP.
XX
AC MI0003364;
XX
DE Danio rerio miR-135b stem-loop
XX
DR ENTREZGENE; 100628778; mir135b.
XX
CC This zebrafish miRNA sequence is predicted based on homology with a
CC verified mammalian sequence (Mihaela Zavolan, personal communication).
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0003032"
FT /product="dre-miR-135b-5p"
FT /evidence=not_experimental
FT /similarity="MI0001996"
FT miRNA 52..73
FT /accession="MIMAT0032006"
FT /product="dre-miR-135b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 82 BP; 16 A; 18 C; 23 G; 0 T; 25 other;
cucuuugccc cguauggcuu uuuauuccua ucugagaauu gcucaggacu cauauaggga 60
uggaagccau gcagggcugg gg 82
//
ID dre-mir-212 standard; RNA; DRE; 94 BP.
XX
AC MI0003385;
XX
DE Danio rerio miR-212 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
DR ENTREZGENE; 100628960; mir212.
XX
CC This miRNA was predicted by computational methods using conservation
CC between human, mouse and Fugu rubripes sequences [1]. Expression of the
CC excised miR was validated in zebrafish, and the 5' end mapped by PCR. The
CC 3' end was not experimentally determined.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..81
FT /accession="MIMAT0003049"
FT /product="dre-miR-212"
FT /evidence=experimental
FT /experiment="PCR [1]"
XX
SQ Sequence 94 BP; 24 A; 22 C; 21 G; 0 T; 27 other;
gucagugcau caauaccuug gcucuagacu gcuuacugcu aaaugugucu gaaaguacag 60
uaacagucua cagucauggc uacugacguc uggc 94
//
ID dre-mir-181a-2 standard; RNA; DRE; 79 BP.
XX
AC MI0003387;
XX
DE Danio rerio miR-181a-2 stem-loop
XX
DR ENTREZGENE; 100033726; mir181a-2.
XX
CC This zebrafish miRNA sequence is predicted based on homology with a
CC verified mammalian sequence (Mihaela Zavolan, personal communication).
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0001623"
FT /product="dre-miR-181a-5p"
FT /evidence=not_experimental
FT /similarity="MI0001380"
FT miRNA 48..69
FT /accession="MIMAT0032007"
FT /product="dre-miR-181a-2-3p"
FT /evidence=not_experimental
XX
SQ Sequence 79 BP; 16 A; 18 C; 22 G; 0 T; 23 other;
uuggugaaca uucaacgcug ucggugaguu uugcgcuucu guaacaaacc aucgaccguu 60
gacuguaccc ugagggugg 79
//
ID rno-mir-489 standard; RNA; RNO; 106 BP.
XX
AC MI0003477;
XX
DE Rattus norvegicus miR-489 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314071; Mir489.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..46
FT /accession="MIMAT0017196"
FT /product="rno-miR-489-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 61..82
FT /accession="MIMAT0003113"
FT /product="rno-miR-489-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0003124"
XX
SQ Sequence 106 BP; 30 A; 22 C; 25 G; 0 T; 29 other;
acugcuacag uggcagcuug guugucguau gcgugaugac acguucucgu guauuccaga 60
augacaucac auauauggca gcuaaacugu uacaggaaca acaagu 106
//
ID rno-mir-383 standard; RNA; RNO; 74 BP.
XX
AC MI0003478;
XX
DE Rattus norvegicus miR-383 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314072; Mir383.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..25
FT /accession="MIMAT0003114"
FT /product="rno-miR-383-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0000791"
FT miRNA 47..67
FT /accession="MIMAT0017197"
FT /product="rno-miR-383-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 74 BP; 20 A; 16 C; 21 G; 0 T; 17 other;
uccucagauc agaaggugac uguggcuuug gguggauauu aaucagccac agcacugccu 60
ggucagaaag agca 74
//
ID rno-mir-501 standard; RNA; RNO; 84 BP.
XX
AC MI0003480;
XX
DE Rattus norvegicus miR-501 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314166; Mir501.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..33
FT /accession="MIMAT0003116"
FT /product="rno-miR-501-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0003185"
FT miRNA 51..73
FT /accession="MIMAT0017198"
FT /product="rno-miR-501-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 84 BP; 18 A; 19 C; 23 G; 0 T; 24 other;
gcucguccuc ucuaauccuu ugucccuggg ugaaaaugcu auuuguaugc aaugcacccg 60
ggcaaggauu uggggaaggu aagc 84
//
ID rno-mir-361 standard; RNA; RNO; 70 BP.
XX
AC MI0003481;
XX
DE Rattus norvegicus miR-361 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314073; Mir361.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0003117"
FT /product="rno-miR-361-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0000761"
FT miRNA 44..67
FT /accession="MIMAT0017199"
FT /product="rno-miR-361-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 70 BP; 17 A; 14 C; 15 G; 0 T; 24 other;
gaagcuuauc agaaucucca gggguacuua uuauuugaaa agucccccag gugugauucu 60
gauucguuuc 70
//
ID rno-mir-215 standard; RNA; RNO; 101 BP.
XX
AC MI0003482;
XX
DE Rattus norvegicus miR-215 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314074; Mir215.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0003118"
FT /product="rno-miR-215"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0000974"
XX
SQ Sequence 101 BP; 21 A; 22 C; 23 G; 0 T; 35 other;
gguguacagg acaaugaccu augauuugac agacagugug gcucnnugcg ugugucuguc 60
auucuguagg ccaauauucu guaugucucu ccuccuuaca a 101
//
ID rno-mir-224 standard; RNA; RNO; 82 BP.
XX
AC MI0003483;
XX
DE Rattus norvegicus miR-224 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314075; Mir224.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0003119"
FT /product="rno-miR-224-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0000711"
FT miRNA 55..76
FT /accession="MIMAT0017200"
FT /product="rno-miR-224-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 82 BP; 18 A; 16 C; 20 G; 0 T; 28 other;
gggcuuucaa gucacuagug guuccguuua guagaugguu uuugcauugu uucaaaaugg 60
ugcccuagug acuacaaagc cc 82
//
ID mmu-mir-483 standard; RNA; MMU; 73 BP.
XX
AC MI0003484;
XX
DE Mus musculus miR-483 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619420; Mir483.
DR ENTREZGENE; 723874; Mir483.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0004782"
FT /product="mmu-miR-483-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT miRNA 45..65
FT /accession="MIMAT0003120"
FT /product="mmu-miR-483-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT /similarity="MI0002467"
XX
SQ Sequence 73 BP; 12 A; 18 C; 25 G; 0 T; 18 other;
gagggggaag acgggagaag agaagggagu gguuuuuggg ugccucacuc cuccccuccc 60
gucuuguucu cuc 73
//
ID rno-mir-483 standard; RNA; RNO; 73 BP.
XX
AC MI0003485;
XX
DE Rattus norvegicus miR-483 stem-loop
XX
RN [1]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314198; Mir483.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0017201"
FT /product="rno-miR-483-5p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
FT miRNA 46..67
FT /accession="MIMAT0003121"
FT /product="rno-miR-483-3p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
FT /similarity="MI0002467"
XX
SQ Sequence 73 BP; 12 A; 18 C; 25 G; 0 T; 18 other;
gagggggaag acgggagaag agaagggagu gguuuuuggg ugccucacuc cuccccuccc 60
gucuuguucu cuc 73
//
ID rno-mir-370 standard; RNA; RNO; 79 BP.
XX
AC MI0003486;
XX
DE Rattus norvegicus miR-370 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314254; Mir370.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..36
FT /accession="MIMAT0017202"
FT /product="rno-miR-370-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 48..69
FT /accession="MIMAT0003122"
FT /product="rno-miR-370-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0001165"
XX
SQ Sequence 79 BP; 16 A; 19 C; 24 G; 0 T; 20 other;
agacagagag accaggucac gucucugcag uuacacagcu caugagugcc ugcuggggug 60
gaaccugguu ugucugucu 79
//
ID rno-mir-377 standard; RNA; RNO; 72 BP.
XX
AC MI0003487;
XX
DE Rattus norvegicus miR-377 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314283; Mir377.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0017203"
FT /product="rno-miR-377-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 43..65
FT /accession="MIMAT0003123"
FT /product="rno-miR-377-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0000794"
XX
SQ Sequence 72 BP; 17 A; 12 C; 19 G; 0 T; 24 other;
cuugagcaga gguugcccuu ggugaauucg cuuuauugau guugaaucac acaaaggcaa 60
cuuuugguug ag 72
//
ID rno-mir-412 standard; RNA; RNO; 70 BP.
XX
AC MI0003488;
XX
DE Rattus norvegicus miR-412 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314076; Mir412.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..28
FT /accession="MIMAT0017204"
FT /product="rno-miR-412-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 45..66
FT /accession="MIMAT0003124"
FT /product="rno-miR-412-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0001164"
XX
SQ Sequence 70 BP; 15 A; 16 C; 20 G; 0 T; 19 other;
gggacggaug gucgaccagc uggaaaguaa uuguuucuaa uguacuucac cugguccacu 60
agccgucggu 70
//
ID rno-mir-133b standard; RNA; RNO; 84 BP.
XX
AC MI0003490;
XX
DE Rattus norvegicus miR-133b stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314078; Mir133b.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0017205"
FT /product="rno-miR-133b-5p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
FT miRNA 48..69
FT /accession="MIMAT0003126"
FT /product="rno-miR-133b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000821"
XX
SQ Sequence 84 BP; 17 A; 27 C; 22 G; 0 T; 18 other;
cccugcucug gcuggucaaa cggaaccaag uccgucuucc ugagagguuu gguccccuuc 60
aaccagcuac agcagggcug gcaa 84
//
ID mmu-mir-486a standard; RNA; MMU; 128 BP.
XX
AC MI0003493;
XX
DE Mus musculus miR-486a stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619423; Mir486.
DR ENTREZGENE; 723876; Mir486.
XX
FH Key Location/Qualifiers
FH
FT miRNA 33..54
FT /accession="MIMAT0003130"
FT /product="mmu-miR-486a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT /similarity="MI0002470"
FT miRNA 75..95
FT /accession="MIMAT0017206"
FT /product="mmu-miR-486a-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 128 BP; 24 A; 40 C; 41 G; 0 T; 23 other;
cagccagcuc ugaucucgcc cucccugagg gguccuguac ugagcugccc cgagguccuu 60
cacugugcuc agcucggggc agcucaguac aggaugcguc agggugggag acaacgggga 120
acaagcca 128
//
ID hsa-mir-539 standard; RNA; HSA; 78 BP.
XX
AC MI0003514;
XX
DE Homo sapiens miR-539 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 16973894.
RA Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP,
RA Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk
RA RH, Cuppen E, Mano H;
RT "Mouse microRNA profiles determined with a new and sensitive cloning
RT method";
RL Nucleic Acids Res. 34:e115(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32529; MIR539.
DR ENTREZGENE; 664612; MIR539.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0003163"
FT /product="hsa-miR-539-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], miRAP-cloned [2]"
FT miRNA 49..70
FT /accession="MIMAT0022705"
FT /product="hsa-miR-539-3p"
FT /evidence=not_experimental
XX
SQ Sequence 78 BP; 22 A; 9 C; 15 G; 0 T; 32 other;
auacuugagg agaaauuauc cuuggugugu ucgcuuuauu uaugaugaau cauacaagga 60
caauuucuuu uugaguau 78
//
ID hsa-mir-544a standard; RNA; HSA; 91 BP.
XX
AC MI0003515;
XX
DE Homo sapiens miR-544a stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32530; MIR544.
DR ENTREZGENE; 664613; MIR544.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 55..76
FT /accession="MIMAT0003164"
FT /product="hsa-miR-544a"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 91 BP; 27 A; 16 C; 17 G; 0 T; 31 other;
auuuucauca ccuagggauc uuguuaaaaa gcagauucug auucagggac caagauucug 60
cauuuuuagc aaguucucaa gugaugcuaa u 91
//
ID hsa-mir-545 standard; RNA; HSA; 106 BP.
XX
AC MI0003516;
XX
DE Homo sapiens miR-545 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32531; MIR545.
DR ENTREZGENE; 664614; MIR545.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0004785"
FT /product="hsa-miR-545-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 63..84
FT /accession="MIMAT0003165"
FT /product="hsa-miR-545-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 106 BP; 33 A; 22 C; 22 G; 0 T; 29 other;
cccagccugg cacauuagua ggccucagua aauguuuauu agaugaauaa augaaugacu 60
caucagcaaa cauuuauugu gugccugcua aagugagcuc cacagg 106
//
ID mmu-mir-540 standard; RNA; MMU; 67 BP.
XX
AC MI0003518;
XX
DE Mus musculus miR-540 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 16973894.
RA Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP,
RA Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk
RA RH, Cuppen E, Mano H;
RT "Mouse microRNA profiles determined with a new and sensitive cloning
RT method";
RL Nucleic Acids Res. 34:e115(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619429; Mir540.
DR ENTREZGENE; 723880; Mir540.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0004786"
FT /product="mmu-miR-540-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT miRNA 43..62
FT /accession="MIMAT0003167"
FT /product="mmu-miR-540-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], miRAP-cloned [2], Illumina [4]"
XX
SQ Sequence 67 BP; 13 A; 18 C; 23 G; 0 T; 13 other;
ugggccaagg gucacccucu gacucugugg ccaaggguag acaggucaga ggucgauccu 60
gggccua 67
//
ID mmu-mir-539 standard; RNA; MMU; 74 BP.
XX
AC MI0003520;
XX
DE Mus musculus miR-539 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [3]
RX PUBMED; 16973894.
RA Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP,
RA Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk
RA RH, Cuppen E, Mano H;
RT "Mouse microRNA profiles determined with a new and sensitive cloning
RT method";
RL Nucleic Acids Res. 34:e115(2006).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619427; Mir539.
DR ENTREZGENE; 723917; Mir539.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0003169"
FT /product="mmu-miR-539-5p"
FT /evidence=experimental
FT /experiment="MPSS [2], miRAP-cloned [3], Illumina [4-5]"
FT /similarity="MI0003514"
FT miRNA 48..69
FT /accession="MIMAT0017208"
FT /product="mmu-miR-539-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 74 BP; 19 A; 8 C; 17 G; 0 T; 30 other;
uacuugagga gaaauuaucc uugguguguu ggcucuuuug gaugaaucau acaaggauaa 60
uuucuuuuug agua 74
//
ID mmu-mir-541 standard; RNA; MMU; 90 BP.
XX
AC MI0003521;
XX
DE Mus musculus miR-541 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 16973894.
RA Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP,
RA Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk
RA RH, Cuppen E, Mano H;
RT "Mouse microRNA profiles determined with a new and sensitive cloning
RT method";
RL Nucleic Acids Res. 34:e115(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619430; Mir541.
DR ENTREZGENE; 723941; Mir541.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..38
FT /accession="MIMAT0003170"
FT /product="mmu-miR-541-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], miRAP-cloned [2], Illumina [4]"
FT miRNA 58..79
FT /accession="MIMAT0017209"
FT /product="mmu-miR-541-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 90 BP; 29 A; 18 C; 21 G; 0 T; 22 other;
gccaaaauca gagaagggau ucugauguug gucacacucc aagaguuuua aaaugagugg 60
cgaacacaga auccauacuc ugcuuauggc 90
//
ID mmu-mir-542 standard; RNA; MMU; 85 BP.
XX
AC MI0003522;
XX
DE Mus musculus miR-542 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [3]
RX PUBMED; 16973894.
RA Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP,
RA Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk
RA RH, Cuppen E, Mano H;
RT "Mouse microRNA profiles determined with a new and sensitive cloning
RT method";
RL Nucleic Acids Res. 34:e115(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619431; Mir542.
DR ENTREZGENE; 723901; Mir542.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0003171"
FT /product="mmu-miR-542-5p"
FT /evidence=experimental
FT /experiment="cloned [1,4], miRAP-cloned [3], Illumina [5]"
FT miRNA 52..73
FT /accession="MIMAT0003172"
FT /product="mmu-miR-542-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4], MPSS [2], miRAP-cloned [3],
FT Illumina [5-6]"
XX
SQ Sequence 85 BP; 21 A; 20 C; 24 G; 0 T; 20 other;
ggaucucaga cgucucgggg aucaucaugu cacgagauac cacugugccc uugugacaga 60
uugauaacug aaaggucugg gagcc 85
//
ID mmu-mir-547 standard; RNA; MMU; 78 BP.
XX
AC MI0003523;
XX
DE Mus musculus miR-547 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619434; Mir547.
DR ENTREZGENE; 723918; Mir547.
XX
CC The predominant miRNA cloned by Langraf et al. has a 3' terminal U
CC residue, which is incompatible with the genome sequence [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0017210"
FT /product="mmu-miR-547-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 49..69
FT /accession="MIMAT0003173"
FT /product="mmu-miR-547-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 78 BP; 24 A; 15 C; 17 G; 0 T; 22 other;
gugugaugua ucacuugagg auguaccacc cauuuaacag gaaacaugcu ugguacaucu 60
uugagugaga uaacacac 78
//
ID rno-mir-540 standard; RNA; RNO; 84 BP.
XX
AC MI0003524;
XX
DE Rattus norvegicus miR-540 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314255; Mir540.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0017211"
FT /product="rno-miR-540-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 52..73
FT /accession="MIMAT0003174"
FT /product="rno-miR-540-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0003518"
XX
SQ Sequence 84 BP; 13 A; 24 C; 31 G; 0 T; 16 other;
cccuggggcu gggccaaggg ucacccucug acucuguggc caaggguaga caggucagag 60
gucgauccug ggccuacucu gggg 84
//
ID rno-mir-543 standard; RNA; RNO; 80 BP.
XX
AC MI0003525;
XX
DE Rattus norvegicus miR-543 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314079; Mir543.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0004787"
FT /product="rno-miR-543-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT miRNA 49..69
FT /accession="MIMAT0003175"
FT /product="rno-miR-543-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
FT /similarity="MI0003519"
XX
SQ Sequence 80 BP; 15 A; 17 C; 19 G; 0 T; 29 other;
ggugcuuaau gagaaguugc ccgcguguuu uucgcuuuau augugacgaa acauucgcgg 60
ugcacuucuu uuucagcauc 80
//
ID rno-mir-539 standard; RNA; RNO; 76 BP.
XX
AC MI0003526;
XX
DE Rattus norvegicus miR-539 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314167; Mir539.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0003176"
FT /product="rno-miR-539-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT /similarity="MI0003514"
FT miRNA 49..70
FT /accession="MIMAT0017212"
FT /product="rno-miR-539-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 76 BP; 19 A; 9 C; 17 G; 0 T; 31 other;
auacuugagg agaaauuauc cuuggugugu uugcucuuuu ggaugaauca uacaagggua 60
auuucuuuuc gaguau 76
//
ID rno-mir-541 standard; RNA; RNO; 90 BP.
XX
AC MI0003527;
XX
DE Rattus norvegicus miR-541 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314080; Mir541.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..38
FT /accession="MIMAT0003177"
FT /product="rno-miR-541-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT /similarity="MI0003521"
FT miRNA 56..78
FT /accession="MIMAT0017213"
FT /product="rno-miR-541-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 90 BP; 30 A; 18 C; 20 G; 0 T; 22 other;
gccaaaauca gagaagggau ucugauguug gucacacucc aagaauuuua aaaugagugg 60
cgaacacaga auccauacuc ugcuuauggc 90
//
ID rno-mir-542-1 standard; RNA; RNO; 79 BP.
XX
AC MI0003528;
XX
DE Rattus norvegicus miR-542-1 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314199; Mir542.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0003178"
FT /product="rno-miR-542-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT miRNA 49..70
FT /accession="MIMAT0003179"
FT /product="rno-miR-542-3p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT /similarity="MI0003686"
XX
SQ Sequence 79 BP; 21 A; 18 C; 21 G; 0 T; 19 other;
ucucagacgu cucggggauc aucaugucac gagauaccac ugcgcacuug ugacagauug 60
auaacugaaa ggucuggga 79
//
ID hsa-mir-376a-2 standard; RNA; HSA; 80 BP.
XX
AC MI0003529;
XX
DE Homo sapiens miR-376a-2 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 17322061.
RA Kawahara Y, Zinshteyn B, Sethupathy P, Iizasa H, Hatzigeorgiou AG,
RA Nishikura K;
RT "Redirection of silencing targets by adenosine-to-inosine editing of
RT miRNAs";
RL Science. 315:1137-1140(2007).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 22282338.
RA Voellenkle C, Rooij Jv, Guffanti A, Brini E, Fasanaro P, Isaia E, Croft L,
RA David M, Capogrossi MC, Moles A, Felsani A, Martelli F;
RT "Deep-sequencing of endothelial cells exposed to hypoxia reveals the
RT complexity of known and novel microRNAs";
RL RNA. 18:472-484(2012).
XX
DR HGNC; 32532; MIR376A2.
DR ENTREZGENE; 664615; MIR376A2.
XX
CC The mature miR-376a products have been shown to be modified by A to I
CC edits [2].
XX
FH Key Location/Qualifiers
FH
FT modified_base 15
FT /mod_base=i
FT modified_base 55
FT /mod_base=i
FT miRNA 12..32
FT /accession="MIMAT0022928"
FT /product="hsa-miR-376a-2-5p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
FT miRNA 50..70
FT /accession="MIMAT0000729"
FT /product="hsa-miR-376a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], SOLiD [4]"
XX
SQ Sequence 80 BP; 22 A; 10 C; 17 G; 0 T; 31 other;
gguauuuaaa agguagauuu uccuucuaug guuacguguu ugaugguuaa ucauagagga 60
aaauccacgu uuucaguauc 80
//
ID mmu-mir-494 standard; RNA; MMU; 85 BP.
XX
AC MI0003532;
XX
DE Mus musculus miR-494 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619426; Mir494.
DR ENTREZGENE; 723878; Mir494.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0017215"
FT /product="mmu-miR-494-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 50..71
FT /accession="MIMAT0003182"
FT /product="mmu-miR-494-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], MPSS [2], Illumina [4-5]"
XX
SQ Sequence 85 BP; 22 A; 13 C; 17 G; 0 T; 33 other;
uugauacuug aaggagaggu uguccguguu gucuucucuu uauuuaugau gaaacauaca 60
cgggaaaccu cuuuuuuagu aucaa 85
//
ID mmu-mir-376c standard; RNA; MMU; 86 BP.
XX
AC MI0003533;
XX
DE Mus musculus miR-376c stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 17322061.
RA Kawahara Y, Zinshteyn B, Sethupathy P, Iizasa H, Hatzigeorgiou AG,
RA Nishikura K;
RT "Redirection of silencing targets by adenosine-to-inosine editing of
RT miRNAs";
RL Science. 315:1137-1140(2007).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619381; Mir376c.
DR ENTREZGENE; 723856; Mir376c.
XX
CC The mature miR-376c products have been shown to be modified by A to I
CC edits [2].
XX
FH Key Location/Qualifiers
FH
FT modified_base 58
FT /mod_base=i
FT miRNA 16..37
FT /accession="MIMAT0005295"
FT /product="mmu-miR-376c-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [4-5]"
FT miRNA 53..73
FT /accession="MIMAT0003183"
FT /product="mmu-miR-376c-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [4-5]"
XX
SQ Sequence 86 BP; 24 A; 9 C; 16 G; 0 T; 37 other;
uuugguauuu aaaaggugga uauuccuucu auguuuaugc uuuuugugau uaaacauaga 60
ggaaauuuca cguuuucagu gucaaa 86
//
ID mmu-mir-369 standard; RNA; MMU; 79 BP.
XX
AC MI0003535;
XX
DE Mus musculus miR-369 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619374; Mir369.
DR ENTREZGENE; 723933; Mir369.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0003185"
FT /product="mmu-miR-369-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 49..69
FT /accession="MIMAT0003186"
FT /product="mmu-miR-369-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 79 BP; 18 A; 14 C; 19 G; 0 T; 28 other;
gguacuugaa gggagaucga ccguguuaua uucgcuuggc ugacuucgaa uaauacaugg 60
uugaucuuuu cucaguauc 79
//
ID mmu-mir-20b standard; RNA; MMU; 80 BP.
XX
AC MI0003536;
XX
DE Mus musculus miR-20b stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618748; Mir20b.
DR ENTREZGENE; 723923; Mir20b.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..34
FT /accession="MIMAT0003187"
FT /product="mmu-miR-20b-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], MPSS [2], Illumina [5-6]"
FT miRNA 50..71
FT /accession="MIMAT0004788"
FT /product="mmu-miR-20b-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 80 BP; 18 A; 19 C; 18 G; 0 T; 25 other;
ccuaguagug ccaaagugcu cauagugcag guaguuuuua uaccacucua cugcagugug 60
agcacuucua guacuccugg 80
//
ID mmu-mir-450a-2 standard; RNA; MMU; 69 BP.
XX
AC MI0003537;
XX
DE Mus musculus miR-450a-2 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619411; Mirn450-2.
DR ENTREZGENE; 723938; Mir450-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0001546"
FT /product="mmu-miR-450a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0003187"
FT miRNA 43..64
FT /accession="MIMAT0004789"
FT /product="mmu-miR-450a-2-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 69 BP; 15 A; 9 C; 16 G; 0 T; 29 other;
gaacuauuuu ugcgaugugu uccuaauaug uacuaugagu auauugggga ugcuuugcau 60
ucaugguuc 69
//
ID mmu-mir-503 standard; RNA; MMU; 71 BP.
XX
AC MI0003538;
XX
DE Mus musculus miR-503 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [3]
RX PUBMED; 16973894.
RA Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP,
RA Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk
RA RH, Cuppen E, Mano H;
RT "Mouse microRNA profiles determined with a new and sensitive cloning
RT method";
RL Nucleic Acids Res. 34:e115(2006).
XX
RN [4]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619428; Mir503.
DR ENTREZGENE; 723879; Mir503.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [5].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0003188"
FT /product="mmu-miR-503-5p"
FT /evidence=experimental
FT /experiment="cloned [1,4-5], MPSS [2], miRAP-cloned [3],
FT Illumina [6-7]"
FT miRNA 47..68
FT /accession="MIMAT0004790"
FT /product="mmu-miR-503-3p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
XX
SQ Sequence 71 BP; 12 A; 16 C; 23 G; 0 T; 20 other;
ugcccuagca gcgggaacag uacugcagug aguguuuggu gcccuggagu auuguuucca 60
cugccugggu a 71
//
ID mmu-mir-291b standard; RNA; MMU; 79 BP.
XX
AC MI0003539;
XX
DE Mus musculus miR-291b stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718464; Mir291b.
DR ENTREZGENE; 100093701; Mirn291b.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0003189"
FT /product="mmu-miR-291b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 48..69
FT /accession="MIMAT0003190"
FT /product="mmu-miR-291b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 79 BP; 14 A; 18 C; 23 G; 0 T; 24 other;
acauacagug ucgaucaaag uggaggcccu cuccgcggcu uggcgggaaa gugcauccau 60
uuuguuuguc ucugugugu 79
//
ID rno-mir-493 standard; RNA; RNO; 84 BP.
XX
AC MI0003540;
XX
DE Rattus norvegicus miR-493 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314081; Mir493.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0017217"
FT /product="rno-miR-493-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 54..74
FT /accession="MIMAT0003191"
FT /product="rno-miR-493-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0003132"
XX
SQ Sequence 84 BP; 12 A; 22 C; 24 G; 0 T; 26 other;
ggccuccagg gccuuguaca ugguaggcuu ucauucauug uuugcacauu cggugaaggu 60
cuacugugug ccaggcccug ugcc 84
//
ID rno-mir-379 standard; RNA; RNO; 85 BP.
XX
AC MI0003541;
XX
DE Rattus norvegicus miR-379 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314168; Mir379.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0003192"
FT /product="rno-miR-379-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT /similarity="MI0000787"
FT miRNA 52..73
FT /accession="MIMAT0004791"
FT /product="rno-miR-379-3p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
XX
SQ Sequence 85 BP; 20 A; 18 C; 21 G; 0 T; 26 other;
ugguuccugc agagguggua gacuauggaa cguaggcguu auguuucuga ccuauguaac 60
augguccacu aacucucagu aucca 85
//
ID rno-mir-494 standard; RNA; RNO; 83 BP.
XX
AC MI0003542;
XX
DE Rattus norvegicus miR-494 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314082; Mir494.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0017218"
FT /product="rno-miR-494-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 49..71
FT /accession="MIMAT0003193"
FT /product="rno-miR-494-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0003134"
XX
SQ Sequence 83 BP; 21 A; 13 C; 17 G; 0 T; 32 other;
ugauacuuga aggagagguu guccguguug ucuucucuuu auuuaugaug aaacauacac 60
gggaaaccuc uuuuuuagua uca 83
//
ID rno-mir-376c standard; RNA; RNO; 84 BP.
XX
AC MI0003543;
XX
DE Rattus norvegicus miR-376c stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314083; Mir376c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0017219"
FT /product="rno-miR-376c-5p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
FT miRNA 52..72
FT /accession="MIMAT0003194"
FT /product="rno-miR-376c-3p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT /similarity="MI0003533"
XX
SQ Sequence 84 BP; 25 A; 8 C; 16 G; 0 T; 35 other;
uugguauuua aaagguggau auuccuucua uguuuauggu auuuaugauu aaacauagag 60
gaaauuucac guuuucagug ucaa 84
//
ID rno-mir-376b standard; RNA; RNO; 86 BP.
XX
AC MI0003544;
XX
DE Rattus norvegicus miR-376b stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314200; Mir376b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0003195"
FT /product="rno-miR-376b-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], SOLiD [4]"
FT /similarity="MI0001162"
FT miRNA 53..73
FT /accession="MIMAT0003196"
FT /product="rno-miR-376b-3p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [4]"
FT /similarity="MI0001162"
XX
SQ Sequence 86 BP; 24 A; 14 C; 16 G; 0 T; 32 other;
uuugguauuu aaaaggugga uauuccuucu augguuacgu gcuuccugga uaaucauaga 60
ggaacaucca cuuuuucagu aucaaa 86
//
ID rno-mir-376a standard; RNA; RNO; 82 BP.
XX
AC MI0003545;
XX
DE Rattus norvegicus miR-376a stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314256; Mir376a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0003197"
FT /product="rno-miR-376a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
FT /similarity="MI0000793"
FT miRNA 51..71
FT /accession="MIMAT0003198"
FT /product="rno-miR-376a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT /similarity="MI0000793"
XX
SQ Sequence 82 BP; 29 A; 12 C; 13 G; 0 T; 28 other;
ugauauuuaa aagguagauu cuccuucuau gaguacaaua uuaaugacua aucguagagg 60
aaaauccacg uuuucaguau ca 82
//
ID rno-mir-381 standard; RNA; RNO; 61 BP.
XX
AC MI0003546;
XX
DE Rattus norvegicus miR-381 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314084; Mir381.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..22
FT /accession="MIMAT0017220"
FT /product="rno-miR-381-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 42..59
FT /accession="MIMAT0003199"
FT /product="rno-miR-381-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0000798"
XX
SQ Sequence 61 BP; 14 A; 11 C; 16 G; 0 T; 20 other;
agcgagguug cccuuuguau auucgguuua uugacauggg auauacaagg gcaagcucuc 60
u 61
//
ID rno-mir-487b standard; RNA; RNO; 82 BP.
XX
AC MI0003547;
XX
DE Rattus norvegicus miR-487b stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314284; Mir487b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0017221"
FT /product="rno-miR-487b-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 50..71
FT /accession="MIMAT0003200"
FT /product="rno-miR-487b-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0003534"
XX
SQ Sequence 82 BP; 15 A; 21 C; 17 G; 0 T; 29 other;
ugguacuugg agagugguua ucccuguccu cuucgcuuca cuuaugccga aucguacagg 60
gucauccacu uuuucaguau ca 82
//
ID rno-mir-382 standard; RNA; RNO; 80 BP.
XX
AC MI0003548;
XX
DE Rattus norvegicus miR-382 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314085; Mir382.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0003201"
FT /product="rno-miR-382-5p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
FT /similarity="MI0000799"
FT miRNA 49..69
FT /accession="MIMAT0003202"
FT /product="rno-miR-382-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2], SOLiD [4]"
XX
SQ Sequence 80 BP; 19 A; 15 C; 19 G; 0 T; 27 other;
gguacuugaa gagaaguugu ucguggugga uucgcuuuac uugugacgaa ucauucacgg 60
acaacacuuu uuucaguacc 80
//
ID rno-mir-485 standard; RNA; RNO; 79 BP.
XX
AC MI0003549;
XX
DE Rattus norvegicus miR-485 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314086; Mir485.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0003203"
FT /product="rno-miR-485-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT /similarity="MI0003492"
FT miRNA 51..72
FT /accession="MIMAT0017222"
FT /product="rno-miR-485-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 79 BP; 18 A; 19 C; 19 G; 0 T; 23 other;
gauacuugga gagaggcugg ccgugaugaa uucgauucau cuaaacgagu cauacacggc 60
ucuccucucu ucuaguguc 79
//
ID rno-mir-409a standard; RNA; RNO; 77 BP.
XX
AC MI0003550;
XX
DE Rattus norvegicus miR-409 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314257; Mir409.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0003204"
FT /product="rno-miR-409a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0001160"
FT miRNA 47..66
FT /accession="MIMAT0003205"
FT /product="rno-miR-409a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0001160"
XX
SQ Sequence 77 BP; 16 A; 18 C; 23 G; 0 T; 20 other;
gguacucgga gagagguuac ccgagcaacu uugcaucugg aggacgaaug uugcucggug 60
aaccccuuuu cgguauc 77
//
ID rno-mir-369 standard; RNA; RNO; 79 BP.
XX
AC MI0003551;
XX
DE Rattus norvegicus miR-369 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314087; Mir369.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0003206"
FT /product="rno-miR-369-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT /similarity="MI0003535"
FT miRNA 49..69
FT /accession="MIMAT0003207"
FT /product="rno-miR-369-3p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT /similarity="MI0003535"
XX
SQ Sequence 79 BP; 19 A; 14 C; 18 G; 0 T; 28 other;
gguacuugaa gggagaucga ccguguuaua uucgcuuagc ugacuucgaa uaauacaugg 60
uugaucuuuu cucaguauc 79
//
ID rno-mir-374 standard; RNA; RNO; 68 BP.
XX
AC MI0003552;
XX
DE Rattus norvegicus miR-374 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314088; Mir374.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0003208"
FT /product="rno-miR-374-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [2], SOLiD [4]"
FT miRNA 40..61
FT /accession="MIMAT0017223"
FT /product="rno-miR-374-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 68 BP; 18 A; 13 C; 14 G; 0 T; 23 other;
cucggaugga uauaauacaa ccugcuaagu guucuagcac uuagcacguu guauuauuau 60
uguccgag 68
//
ID rno-mir-20b standard; RNA; RNO; 72 BP.
XX
AC MI0003554;
XX
DE Rattus norvegicus miR-20b stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314201; Mir20b.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0003211"
FT /product="rno-miR-20b-5p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
FT /similarity="MI0001519"
FT miRNA 46..67
FT /accession="MIMAT0003212"
FT /product="rno-miR-20b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
XX
SQ Sequence 72 BP; 14 A; 16 C; 20 G; 0 T; 22 other;
guagugccaa agugcucaua gugcagguag guuuugcugc acucuacugc agugugagca 60
cuucugguac uc 72
//
ID rno-mir-503-1 standard; RNA; RNO; 71 BP.
XX
AC MI0003555;
XX
DE Rattus norvegicus miR-503-1 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314089; Mir503.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0003213"
FT /product="rno-miR-503-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT miRNA 46..68
FT /accession="MIMAT0017224"
FT /product="rno-miR-503-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 71 BP; 11 A; 16 C; 24 G; 0 T; 20 other;
ugcccuagca gcgggaacag uacugcagug aguguuuggu gcccuggagu auuguuuccg 60
cugccugggu a 71
//
ID hsa-mir-552 standard; RNA; HSA; 96 BP.
XX
AC MI0003557;
XX
DE Homo sapiens miR-552 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 32808; MIR552.
DR ENTREZGENE; 693137; MIR552.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0026615"
FT /product="hsa-miR-552-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 61..81
FT /accession="MIMAT0003215"
FT /product="hsa-miR-552-3p"
FT /evidence=experimental
FT /experiment="SAGE [1], Illumina [2]"
XX
SQ Sequence 96 BP; 28 A; 18 C; 18 G; 0 T; 32 other;
aaccauucaa auauaccaca guuuguuuaa ccuuuugccu guugguugaa gaugccuuuc 60
aacaggugac ugguuagaca aacuguggua uauaca 96
//
ID hsa-mir-92b standard; RNA; HSA; 96 BP.
XX
AC MI0003560;
XX
DE Homo sapiens miR-92b stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 32920; MIR92B.
DR ENTREZGENE; 693235; MIR92B.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0004792"
FT /product="hsa-miR-92b-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 61..82
FT /accession="MIMAT0003218"
FT /product="hsa-miR-92b-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], RT-PCR [1], SAGE [1], cloned
FT [2-3]"
XX
SQ Sequence 96 BP; 8 A; 38 C; 34 G; 0 T; 16 other;
cgggccccgg gcgggcggga gggacgggac gcggugcagu guuguuuuuu cccccgccaa 60
uauugcacuc gucccggccu ccggcccccc cggccc 96
//
ID hsa-mir-556 standard; RNA; HSA; 95 BP.
XX
AC MI0003562;
XX
DE Homo sapiens miR-556 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32812; MIR556.
DR ENTREZGENE; 693141; MIR556.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0003220"
FT /product="hsa-miR-556-5p"
FT /evidence=experimental
FT /experiment="SAGE [1], cloned [2]"
FT miRNA 55..76
FT /accession="MIMAT0004793"
FT /product="hsa-miR-556-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 95 BP; 32 A; 16 C; 10 G; 0 T; 37 other;
gauaguaaua agaaagauga gcucauugua auaugagcuu cauuuauaca uuucauauua 60
ccauuagcuc aucuuuuuua uuacuaccuu caaca 95
//
ID hsa-mir-561 standard; RNA; HSA; 97 BP.
XX
AC MI0003567;
XX
DE Homo sapiens miR-561 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32817; MIR561.
DR ENTREZGENE; 693146; MIR561.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..47
FT /accession="MIMAT0022706"
FT /product="hsa-miR-561-5p"
FT /evidence=not_experimental
FT miRNA 61..82
FT /accession="MIMAT0003225"
FT /product="hsa-miR-561-3p"
FT /evidence=experimental
FT /experiment="SAGE [1], cloned [2]"
XX
SQ Sequence 97 BP; 30 A; 25 C; 19 G; 0 T; 23 other;
cuucauccac caguccucca ggaacaucaa ggaucuuaaa cuuugccaga gcuacaaagg 60
caaaguuuaa gauccuugaa guuccugggg gaaccau 97
//
ID hsa-mir-551b standard; RNA; HSA; 96 BP.
XX
AC MI0003575;
XX
DE Homo sapiens miR-551b stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32807; MIR551B.
DR ENTREZGENE; 693136; MIR551B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0004794"
FT /product="hsa-miR-551b-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 61..81
FT /accession="MIMAT0003233"
FT /product="hsa-miR-551b-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], RT-PCR [1], SAGE [1], cloned
FT [2]"
XX
SQ Sequence 96 BP; 25 A; 20 C; 31 G; 0 T; 20 other;
agaugugcuc uccuggccca ugaaaucaag cgugggugag accuggugca gaacgggaag 60
gcgacccaua cuugguuuca gaggcuguga gaauaa 96
//
ID hsa-mir-574 standard; RNA; HSA; 96 BP.
XX
AC MI0003581;
XX
DE Homo sapiens miR-574 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 32830; MIR574.
DR ENTREZGENE; 693159; MIR574.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..47
FT /accession="MIMAT0004795"
FT /product="hsa-miR-574-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 61..82
FT /accession="MIMAT0003239"
FT /product="hsa-miR-574-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], RT-PCR [1], SAGE [1], cloned
FT [2-3]"
XX
SQ Sequence 96 BP; 13 A; 28 C; 35 G; 0 T; 20 other;
gggaccugcg ugggugcggg cgugugagug ugugugugug aguguguguc gcuccggguc 60
cacgcucaug cacacaccca cacgcccaca cucagg 96
//
ID hsa-mir-576 standard; RNA; HSA; 98 BP.
XX
AC MI0003583;
XX
DE Homo sapiens miR-576 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32832; MIR576.
DR ENTREZGENE; 693161; MIR576.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0003241"
FT /product="hsa-miR-576-5p"
FT /evidence=experimental
FT /experiment="SAGE [1], cloned [2]"
FT miRNA 55..76
FT /accession="MIMAT0004796"
FT /product="hsa-miR-576-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 98 BP; 31 A; 17 C; 19 G; 0 T; 31 other;
uacaauccaa cgaggauucu aauuucucca cgucuuuggu aauaagguuu ggcaaagaug 60
uggaaaaauu ggaauccuca uucgauuggu uauaacca 98
//
ID hsa-mir-577 standard; RNA; HSA; 96 BP.
XX
AC MI0003584;
XX
DE Homo sapiens miR-577 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
DR HGNC; 32833; MIR577.
DR ENTREZGENE; 693162; MIR577.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0003242"
FT /product="hsa-miR-577"
FT /evidence=experimental
FT /experiment="Microarray [1], RT-PCR [1], SAGE [1]"
XX
SQ Sequence 96 BP; 26 A; 18 C; 20 G; 0 T; 32 other;
ugggggagug aagaguagau aaaauauugg uaccugauga aucugaggcc agguuucaau 60
acuuuaucug cucuucauuu ccccauaucu acuuac 96
//
ID hsa-mir-579 standard; RNA; HSA; 98 BP.
XX
AC MI0003586;
XX
DE Homo sapiens miR-579 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 32835; MIR579.
DR ENTREZGENE; 693164; MIR579.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0026616"
FT /product="hsa-miR-579-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 62..84
FT /accession="MIMAT0003244"
FT /product="hsa-miR-579-3p"
FT /evidence=experimental
FT /experiment="SAGE [1], cloned [2], Illumina [3]"
XX
SQ Sequence 98 BP; 32 A; 14 C; 18 G; 0 T; 34 other;
cauauuaggu uaaugcaaaa guaaucgcgg uuugugccag augacgauuu gaauuaauaa 60
auucauuugg uauaaaccgc gauuauuuuu gcaucaac 98
//
ID hsa-mir-582 standard; RNA; HSA; 98 BP.
XX
AC MI0003589;
XX
DE Homo sapiens miR-582 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 32838; MIR582.
DR ENTREZGENE; 693167; MIR582.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0003247"
FT /product="hsa-miR-582-5p"
FT /evidence=experimental
FT /experiment="Microarray [1], RT-PCR [1], SAGE [1], cloned
FT [2]"
FT miRNA 53..74
FT /accession="MIMAT0004797"
FT /product="hsa-miR-582-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
XX
SQ Sequence 98 BP; 33 A; 18 C; 17 G; 0 T; 30 other;
aucugugcuc uuugauuaca guuguucaac caguuacuaa ucuaacuaau uguaacuggu 60
ugaacaacug aacccaaagg gugcaaagua gaaacauu 98
//
ID hsa-mir-584 standard; RNA; HSA; 97 BP.
XX
AC MI0003591;
XX
DE Homo sapiens miR-584 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 32840; MIR584.
DR ENTREZGENE; 693169; MIR584.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0003249"
FT /product="hsa-miR-584-5p"
FT /evidence=experimental
FT /experiment="Microarray [1], RT-PCR [1], SAGE [1], cloned
FT [2-3]"
FT miRNA 55..76
FT /accession="MIMAT0022708"
FT /product="hsa-miR-584-3p"
FT /evidence=not_experimental
XX
SQ Sequence 97 BP; 20 A; 22 C; 30 G; 0 T; 25 other;
uagggugacc agccauuaug guuugccugg gacugaggaa uuugcuggga uaugucaguu 60
ccaggccaac caggcugguu ggucucccug aagcaac 97
//
ID hsa-mir-585 standard; RNA; HSA; 94 BP.
XX
AC MI0003592;
XX
DE Homo sapiens miR-585 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 32841; MIR585.
DR ENTREZGENE; 693170; MIR585.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0026618"
FT /product="hsa-miR-585-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 61..79
FT /accession="MIMAT0003250"
FT /product="hsa-miR-585-3p"
FT /evidence=experimental
FT /experiment="SAGE [1], Illumina [2]"
XX
SQ Sequence 94 BP; 22 A; 22 C; 29 G; 0 T; 21 other;
uggggugucu gugcuauggc agcccuagca cacagauacg cccagagaaa gccugaacgu 60
ugggcguauc uguaugcuag ggcugcugua acaa 94
//
ID hsa-mir-548b standard; RNA; HSA; 97 BP.
XX
AC MI0003596;
XX
DE Homo sapiens miR-548b stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32799; MIR548B.
DR ENTREZGENE; 693128; MIR548B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0004798"
FT /product="hsa-miR-548b-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 61..82
FT /accession="MIMAT0003254"
FT /product="hsa-miR-548b-3p"
FT /evidence=experimental
FT /experiment="SAGE [1], cloned [2]"
XX
SQ Sequence 97 BP; 25 A; 17 C; 19 G; 0 T; 36 other;
cagacuauau auuuagguug gcgcaaaagu aauugugguu uuggccuuua uuuucaaugg 60
caagaaccuc aguugcuuuu gugccaaccu aauacuu 97
//
ID hsa-mir-589 standard; RNA; HSA; 99 BP.
XX
AC MI0003599;
XX
DE Homo sapiens miR-589 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32845; MIR589.
DR ENTREZGENE; 693174; MIR589.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0004799"
FT /product="hsa-miR-589-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 61..84
FT /accession="MIMAT0003256"
FT /product="hsa-miR-589-3p"
FT /evidence=experimental
FT /experiment="SAGE [1]"
XX
SQ Sequence 99 BP; 18 A; 36 C; 26 G; 0 T; 19 other;
uccagccugu gcccagcagc cccugagaac cacgucugcu cugagcuggg uacugccugu 60
ucagaacaaa ugccgguucc cagacgcugc cagcuggcc 99
//
ID hsa-mir-550a-1 standard; RNA; HSA; 97 BP.
XX
AC MI0003600;
XX
DE Homo sapiens miR-550a-1 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32804; MIR550-1.
DR ENTREZGENE; 693133; MIR550A1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0004800"
FT /product="hsa-miR-550a-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 61..82
FT /accession="MIMAT0003257"
FT /product="hsa-miR-550a-3p"
FT /evidence=experimental
FT /experiment="SAGE [1]"
XX
SQ Sequence 97 BP; 19 A; 23 C; 26 G; 0 T; 29 other;
ugaugcuuug cuggcuggug cagugccuga gggaguaaga gcccuguugu uguaagauag 60
ugucuuacuc ccucaggcac aucuccaaca agucucu 97
//
ID hsa-mir-550a-2 standard; RNA; HSA; 97 BP.
XX
AC MI0003601;
XX
DE Homo sapiens miR-550a-2 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32805; MIR550-2.
DR ENTREZGENE; 693134; MIR550A2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0004800"
FT /product="hsa-miR-550a-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 61..82
FT /accession="MIMAT0003257"
FT /product="hsa-miR-550a-3p"
FT /evidence=experimental
FT /experiment="SAGE [1]"
XX
SQ Sequence 97 BP; 16 A; 24 C; 28 G; 0 T; 29 other;
ugaugcuuug cuggcuggug cagugccuga gggaguaaga gcccuguugu ugucagauag 60
ugucuuacuc ccucaggcac aucuccagcg agucucu 97
//
ID hsa-mir-590 standard; RNA; HSA; 97 BP.
XX
AC MI0003602;
XX
DE Homo sapiens miR-590 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32846; MIR590.
DR ENTREZGENE; 693175; MIR590.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0003258"
FT /product="hsa-miR-590-5p"
FT /evidence=experimental
FT /experiment="Microarray [1], SAGE [1], cloned [2]"
FT miRNA 56..76
FT /accession="MIMAT0004801"
FT /product="hsa-miR-590-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 97 BP; 33 A; 14 C; 20 G; 0 T; 30 other;
uagccaguca gaaaugagcu uauucauaaa agugcaguau ggugaaguca aucuguaauu 60
uuauguauaa gcuagucucu gauugaaaca ugcagca 97
//
ID hsa-mir-597 standard; RNA; HSA; 97 BP.
XX
AC MI0003609;
XX
DE Homo sapiens miR-597 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 32853; MIR597.
DR ENTREZGENE; 693182; MIR597.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0003265"
FT /product="hsa-miR-597-5p"
FT /evidence=experimental
FT /experiment="SAGE [1], cloned [2], Illumina [3]"
FT miRNA 58..80
FT /accession="MIMAT0026619"
FT /product="hsa-miR-597-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 97 BP; 24 A; 19 C; 24 G; 0 T; 30 other;
uacuuacucu acgugugugu cacucgauga ccacugugaa gacaguaaaa uguacagugg 60
uucucuugug gcucaagcgu aauguagagu acugguc 97
//
ID hsa-mir-598 standard; RNA; HSA; 97 BP.
XX
AC MI0003610;
XX
DE Homo sapiens miR-598 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 32854; MIR598.
DR ENTREZGENE; 693183; MIR598.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0026620"
FT /product="hsa-miR-598-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 61..82
FT /accession="MIMAT0003266"
FT /product="hsa-miR-598-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], SAGE [1], cloned [2],
FT Illumina [3]"
XX
SQ Sequence 97 BP; 17 A; 21 C; 31 G; 0 T; 28 other;
gcuugaugau gcugcugaug cuggcgguga ucccgauggu gugagcugga aauggggugc 60
uacgucaucg uugucaucgu caucaucauc auccgag 97
//
ID hsa-mir-548a-3 standard; RNA; HSA; 97 BP.
XX
AC MI0003612;
XX
DE Homo sapiens miR-548a-3 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32798; MIR548A3.
DR ENTREZGENE; 693127; MIR548A3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0004803"
FT /product="hsa-miR-548a-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 61..82
FT /accession="MIMAT0003251"
FT /product="hsa-miR-548a-3p"
FT /evidence=experimental
FT /experiment="SAGE [1], cloned [2]"
XX
SQ Sequence 97 BP; 30 A; 18 C; 17 G; 0 T; 32 other;
ccuagaaugu uauuaggucg gugcaaaagu aauugcgagu uuuaccauua cuuucaaugg 60
caaaacuggc aauuacuuuu gcaccaacgu aauacuu 97
//
ID hsa-mir-605 standard; RNA; HSA; 83 BP.
XX
AC MI0003618;
XX
DE Homo sapiens miR-605 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 23226537.
RA Ple H, Landry P, Benham A, Coarfa C, Gunaratne PH, Provost P;
RT "The repertoire and features of human platelet microRNAs";
RL PLoS One. 7:e50746(2012).
XX
DR HGNC; 32861; MIR605.
DR ENTREZGENE; 693190; MIR605.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0003273"
FT /product="hsa-miR-605-5p"
FT /evidence=experimental
FT /experiment="SAGE [1]"
FT miRNA 51..72
FT /accession="MIMAT0026621"
FT /product="hsa-miR-605-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 83 BP; 24 A; 17 C; 20 G; 0 T; 22 other;
gcccuagcuu gguucuaaau cccauggugc cuucuccuug ggaaaaacag agaaggcacu 60
augagauuua gaaucaaguu agg 83
//
ID hsa-mir-615 standard; RNA; HSA; 96 BP.
XX
AC MI0003628;
XX
DE Homo sapiens miR-615 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32871; MIR615.
DR ENTREZGENE; 693200; MIR615.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0004804"
FT /product="hsa-miR-615-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 61..82
FT /accession="MIMAT0003283"
FT /product="hsa-miR-615-3p"
FT /evidence=experimental
FT /experiment="RT-PCR [1], SAGE [1], cloned [2]"
XX
SQ Sequence 96 BP; 8 A; 34 C; 34 G; 0 T; 20 other;
cucgggaggg gcgggagggg gguccccggu gcucggaucu cgagggugcu uauuguucgg 60
uccgagccug ggucucccuc uuccccccaa cccccc 96
//
ID hsa-mir-616 standard; RNA; HSA; 97 BP.
XX
AC MI0003629;
XX
DE Homo sapiens miR-616 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32872; MIR616.
DR ENTREZGENE; 693201; MIR616.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0003284"
FT /product="hsa-miR-616-5p"
FT /evidence=experimental
FT /experiment="SAGE [1]"
FT miRNA 56..77
FT /accession="MIMAT0004805"
FT /product="hsa-miR-616-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 97 BP; 31 A; 18 C; 21 G; 0 T; 27 other;
uuagguaauu ccuccacuca aaacccuuca gugacuucca ugacaugaaa uaggaaguca 60
uuggaggguu ugagcagagg aaugaccugu uuuaaaa 97
//
ID hsa-mir-625 standard; RNA; HSA; 85 BP.
XX
AC MI0003639;
XX
DE Homo sapiens miR-625 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32881; MIR625.
DR ENTREZGENE; 693210; MIR625.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0003294"
FT /product="hsa-miR-625-5p"
FT /evidence=experimental
FT /experiment="Microarray [1], RT-PCR [1], SAGE [1], cloned
FT [2]"
FT miRNA 52..73
FT /accession="MIMAT0004808"
FT /product="hsa-miR-625-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 85 BP; 21 A; 20 C; 21 G; 0 T; 23 other;
aggguagagg gaugaggggg aaaguucuau aguccuguaa uuagaucuca ggacuauaga 60
acuuuccccc ucaucccucu gcccu 85
//
ID hsa-mir-627 standard; RNA; HSA; 97 BP.
XX
AC MI0003641;
XX
DE Homo sapiens miR-627 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23226537.
RA Ple H, Landry P, Benham A, Coarfa C, Gunaratne PH, Provost P;
RT "The repertoire and features of human platelet microRNAs";
RL PLoS One. 7:e50746(2012).
XX
DR HGNC; 32883; MIR627.
DR ENTREZGENE; 693212; MIR627.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0003296"
FT /product="hsa-miR-627-5p"
FT /evidence=experimental
FT /experiment="SAGE [1], cloned [2]"
FT miRNA 55..74
FT /accession="MIMAT0026623"
FT /product="hsa-miR-627-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 97 BP; 29 A; 17 C; 17 G; 0 T; 34 other;
uacuuauuac ugguagugag ucucuaagaa aagaggaggu gguuguuuuc cuccucuuuu 60
cuuugagacu cacuaccaau aauaagaaau acuacua 97
//
ID hsa-mir-629 standard; RNA; HSA; 97 BP.
XX
AC MI0003643;
XX
DE Homo sapiens miR-629 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32885; MIR629.
DR ENTREZGENE; 693214; MIR629.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..42
FT /accession="MIMAT0004810"
FT /product="hsa-miR-629-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 61..82
FT /accession="MIMAT0003298"
FT /product="hsa-miR-629-3p"
FT /evidence=experimental
FT /experiment="SAGE [1], cloned [2]"
XX
SQ Sequence 97 BP; 16 A; 31 C; 27 G; 0 T; 23 other;
ucccuuuccc aggggagggg cuggguuuac guugggagaa cuuuuacggu gaaccaggag 60
guucucccaa cguaagccca gccccucccc ucugccu 97
//
ID hsa-mir-33b standard; RNA; HSA; 96 BP.
XX
AC MI0003646;
XX
DE Homo sapiens miR-33b stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32791; MIR33B.
DR ENTREZGENE; 693120; MIR33B.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..35
FT /accession="MIMAT0003301"
FT /product="hsa-miR-33b-5p"
FT /evidence=experimental
FT /experiment="SAGE [1], cloned [2]"
FT miRNA 54..75
FT /accession="MIMAT0004811"
FT /product="hsa-miR-33b-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 96 BP; 10 A; 32 C; 38 G; 0 T; 16 other;
gcgggcggcc ccgcggugca uugcuguugc auugcacgug ugugaggcgg gugcagugcc 60
ucggcagugc agcccggagc cggccccugg caccac 96
//
ID hsa-mir-642a standard; RNA; HSA; 97 BP.
XX
AC MI0003657;
XX
DE Homo sapiens miR-642a stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 21767385.
RA Zaragosi LE, Wdziekonski B, Brigand KL, Villageois P, Mari B, Waldmann R,
RA Dani C, Barbry P;
RT "Small RNA sequencing reveals miR-642a-3p as a novel adipocyte-specific
RT microRNA and miR-30 as a key regulator of human adipogenesis";
RL Genome Biol. 12:R64(2011).
XX
DR HGNC; 32898; MIR642.
DR ENTREZGENE; 693227; MIR642A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0003312"
FT /product="hsa-miR-642a-5p"
FT /evidence=experimental
FT /experiment="RT-PCR [1], SAGE [1], cloned [2]"
FT miRNA 51..72
FT /accession="MIMAT0020924"
FT /product="hsa-miR-642a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 97 BP; 20 A; 24 C; 29 G; 0 T; 24 other;
aucugaguug ggaggguccc ucuccaaaug ugucuugggg ugggggauca agacacauuu 60
ggagagggaa ccucccaacu cggccucugc caucauu 97
//
ID hsa-mir-643 standard; RNA; HSA; 97 BP.
XX
AC MI0003658;
XX
DE Homo sapiens miR-643 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
DR HGNC; 32899; MIR643.
DR ENTREZGENE; 693228; MIR643.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..82
FT /accession="MIMAT0003313"
FT /product="hsa-miR-643"
FT /evidence=experimental
FT /experiment="SAGE [1]"
XX
SQ Sequence 97 BP; 32 A; 16 C; 21 G; 0 T; 28 other;
accaagugau auucauuguc uaccugagcu agaauacaag uaguuggcgu cuucagagac 60
acuuguaugc uagcucaggu agauauugaa ugaaaaa 97
//
ID hsa-mir-651 standard; RNA; HSA; 97 BP.
XX
AC MI0003666;
XX
DE Homo sapiens miR-651 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 32907; MIR651.
DR ENTREZGENE; 723779; MIR651.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0003321"
FT /product="hsa-miR-651-5p"
FT /evidence=experimental
FT /experiment="RT-PCR [1], SAGE [1], cloned [2], Illumina
FT [3]"
FT miRNA 54..75
FT /accession="MIMAT0026624"
FT /product="hsa-miR-651-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 97 BP; 35 A; 12 C; 17 G; 0 T; 33 other;
aaucuaucac ugcuuuuuag gauaagcuug acuuuuguuc aaauaaaaau gcaaaaggaa 60
aguguauccu aaaaggcaau gacaguuuaa uguguuu 97
//
ID hsa-mir-652 standard; RNA; HSA; 98 BP.
XX
AC MI0003667;
XX
DE Homo sapiens miR-652 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32908; MIR652.
DR ENTREZGENE; 724022; MIR652.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The 3' end of the miRNA is offset
CC with respect to previous annotations. miR-652 cloned in [2] has a 1 nt 3'
CC extension (U), which is incompatible with the genome sequence.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..45
FT /accession="MIMAT0022709"
FT /product="hsa-miR-652-5p"
FT /evidence=not_experimental
FT miRNA 61..81
FT /accession="MIMAT0003322"
FT /product="hsa-miR-652-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], SAGE [1], cloned [2]"
XX
SQ Sequence 98 BP; 29 A; 25 C; 24 G; 0 T; 20 other;
acgaauggcu augcacugca caacccuagg agagggugcc auucacauag acuauaauug 60
aauggcgcca cuaggguugu gcagugcaca accuacac 98
//
ID hsa-mir-548d-1 standard; RNA; HSA; 97 BP.
XX
AC MI0003668;
XX
DE Homo sapiens miR-548d-1 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32801; MIR548D1.
DR ENTREZGENE; 693130; MIR548D1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0004812"
FT /product="hsa-miR-548d-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 61..82
FT /accession="MIMAT0003323"
FT /product="hsa-miR-548d-3p"
FT /evidence=experimental
FT /experiment="RT-PCR [1], SAGE [1], cloned [2]"
XX
SQ Sequence 97 BP; 35 A; 13 C; 19 G; 0 T; 30 other;
aaacaaguua uauuagguug gugcaaaagu aauugugguu uuugccugua aaaguaaugg 60
caaaaaccac aguuucuuuu gcaccagacu aauaaag 97
//
ID hsa-mir-548d-2 standard; RNA; HSA; 97 BP.
XX
AC MI0003671;
XX
DE Homo sapiens miR-548d-2 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32802; MIR548D2.
DR ENTREZGENE; 693131; MIR548D2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0004812"
FT /product="hsa-miR-548d-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 61..82
FT /accession="MIMAT0003323"
FT /product="hsa-miR-548d-3p"
FT /evidence=experimental
FT /experiment="RT-PCR [1], SAGE [1], cloned [2]"
XX
SQ Sequence 97 BP; 34 A; 13 C; 22 G; 0 T; 28 other;
gagagggaag auuuagguug gugcaaaagu aauugugguu uuugccauug aaaguaaugg 60
caaaaaccac aguuucuuuu gcaccaaccu aauaaaa 97
//
ID hsa-mir-449b standard; RNA; HSA; 97 BP.
XX
AC MI0003673;
XX
DE Homo sapiens miR-449b stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 19144710.
RA Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G;
RT "Identification of novel Epstein-Barr virus microRNA genes from
RT nasopharyngeal carcinomas";
RL J Virol. 83:3333-3341(2009).
XX
DR HGNC; 32794; MIR449B.
DR ENTREZGENE; 693123; MIR449B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0003327"
FT /product="hsa-miR-449b-5p"
FT /evidence=experimental
FT /experiment="Microarray [1], RT-PCR [1], SAGE [1], cloned
FT [2]"
FT miRNA 55..76
FT /accession="MIMAT0009203"
FT /product="hsa-miR-449b-3p"
FT /evidence=experimental
FT /experiment="454 [3]"
XX
SQ Sequence 97 BP; 21 A; 24 C; 23 G; 0 T; 29 other;
ugaccugaau cagguaggca guguauuguu agcuggcugc uugggucaag ucagcagcca 60
caacuacccu gccacuugcu ucuggauaaa uucuucu 97
//
ID hsa-mir-653 standard; RNA; HSA; 96 BP.
XX
AC MI0003674;
XX
DE Homo sapiens miR-653 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 32909; MIR653.
DR ENTREZGENE; 724023; MIR653.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0003328"
FT /product="hsa-miR-653-5p"
FT /evidence=experimental
FT /experiment="SAGE [1], cloned [2], Illumina [3]"
FT miRNA 51..72
FT /accession="MIMAT0026625"
FT /product="hsa-miR-653-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 96 BP; 31 A; 18 C; 17 G; 0 T; 30 other;
uucauuccuu caguguugaa acaaucucua cugaaccagc uucaaacaag uucacuggag 60
uuuguuucaa uauugcaaga augauaagau ggaagc 96
//
ID hsa-mir-411 standard; RNA; HSA; 96 BP.
XX
AC MI0003675;
XX
DE Homo sapiens miR-411 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32792; MIR411.
DR ENTREZGENE; 693121; MIR411.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0003329"
FT /product="hsa-miR-411-5p"
FT /evidence=experimental
FT /experiment="Microarray [1], RT-PCR [1], SAGE [1], cloned
FT [2]"
FT miRNA 51..72
FT /accession="MIMAT0004813"
FT /product="hsa-miR-411-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 96 BP; 26 A; 24 C; 21 G; 0 T; 25 other;
ugguacuugg agagauagua gaccguauag cguacgcuuu aucugugacg uauguaacac 60
gguccacuaa cccucaguau caaauccauc cccgag 96
//
ID hsa-mir-654 standard; RNA; HSA; 81 BP.
XX
AC MI0003676;
XX
DE Homo sapiens miR-654 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32910; MIR654.
DR ENTREZGENE; 724024; MIR654.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0003330"
FT /product="hsa-miR-654-5p"
FT /evidence=experimental
FT /experiment="Microarray [1], SAGE [1], cloned [2]"
FT miRNA 51..72
FT /accession="MIMAT0004814"
FT /product="hsa-miR-654-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 81 BP; 19 A; 18 C; 25 G; 0 T; 19 other;
ggguaagugg aaagauggug ggccgcagaa caugugcuga guucgugcca uaugucugcu 60
gaccaucacc uuuagaagcc c 81
//
ID hsa-mir-655 standard; RNA; HSA; 97 BP.
XX
AC MI0003677;
XX
DE Homo sapiens miR-655 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 32911; MIR655.
DR ENTREZGENE; 724025; MIR655.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0026626"
FT /product="hsa-miR-655-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 61..82
FT /accession="MIMAT0003331"
FT /product="hsa-miR-655-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], RT-PCR [1], SAGE [1], cloned
FT [2], Illumina [3]"
XX
SQ Sequence 97 BP; 28 A; 16 C; 18 G; 0 T; 35 other;
aacuaugcaa ggauauuuga ggagagguua uccguguuau guucgcuuca uucaucauga 60
auaauacaug guuaaccucu uuuugaauau cagacuc 97
//
ID hsa-mir-656 standard; RNA; HSA; 78 BP.
XX
AC MI0003678;
XX
DE Homo sapiens miR-656 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 32912; MIR656.
DR ENTREZGENE; 724026; MIR656.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..28
FT /accession="MIMAT0026627"
FT /product="hsa-miR-656-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 43..63
FT /accession="MIMAT0003332"
FT /product="hsa-miR-656-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], RT-PCR [1], SAGE [1],
FT Illumina [2]"
XX
SQ Sequence 78 BP; 21 A; 15 C; 14 G; 0 T; 28 other;
cugaaauagg uugccuguga gguguucacu uucuauauga ugaauauuau acagucaacc 60
ucuuuccgau aucgaauc 78
//
ID hsa-mir-659 standard; RNA; HSA; 97 BP.
XX
AC MI0003683;
XX
DE Homo sapiens miR-659 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
DR HGNC; 32915; MIR659.
DR ENTREZGENE; 724029; MIR659.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0022710"
FT /product="hsa-miR-659-5p"
FT /evidence=not_experimental
FT miRNA 61..82
FT /accession="MIMAT0003337"
FT /product="hsa-miR-659-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], SAGE [1]"
XX
SQ Sequence 97 BP; 21 A; 29 C; 23 G; 0 T; 24 other;
uaccgacccu cgauuugguu caggaccuuc ccugaaccaa ggaagaguca cagucucuuc 60
cuugguucag ggaggguccc caacaauguc cucaugg 97
//
ID hsa-mir-660 standard; RNA; HSA; 97 BP.
XX
AC MI0003684;
XX
DE Homo sapiens miR-660 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32916; MIR660.
DR ENTREZGENE; 724030; MIR660.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0003338"
FT /product="hsa-miR-660-5p"
FT /evidence=experimental
FT /experiment="Microarray [1], RT-PCR [1], SAGE [1], cloned
FT [2]"
FT miRNA 52..72
FT /accession="MIMAT0022711"
FT /product="hsa-miR-660-3p"
FT /evidence=not_experimental
XX
SQ Sequence 97 BP; 20 A; 26 C; 22 G; 0 T; 29 other;
cugcuccuuc ucccauaccc auugcauauc ggaguuguga auucucaaaa caccuccugu 60
gugcauggau uacaggaggg ugagccuugu caucgug 97
//
ID hsa-mir-421 standard; RNA; HSA; 85 BP.
XX
AC MI0003685;
XX
DE Homo sapiens miR-421 stem-loop
XX
RN [1]
RX PUBMED; 16505370.
RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
RA Kinzler KW, Vogelstein B, Velculescu VE;
RT "The colorectal microRNAome";
RL Proc Natl Acad Sci U S A. 103:3687-3692(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32793; MIR421.
DR ENTREZGENE; 693122; MIR421.
XX
FH Key Location/Qualifiers
FH
FT miRNA 48..70
FT /accession="MIMAT0003339"
FT /product="hsa-miR-421"
FT /evidence=experimental
FT /experiment="Microarray [1], SAGE [1], cloned [2]"
XX
SQ Sequence 85 BP; 26 A; 16 C; 17 G; 0 T; 26 other;
gcacauugua ggccucauua aauguuuguu gaaugaaaaa augaaucauc aacagacauu 60
aauugggcgc cugcucugug aucuc 85
//
ID hsa-mir-542 standard; RNA; HSA; 97 BP.
XX
AC MI0003686;
XX
DE Homo sapiens miR-542 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 32534; MIR542.
DR ENTREZGENE; 664617; MIR542.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0003340"
FT /product="hsa-miR-542-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
FT miRNA 53..74
FT /accession="MIMAT0003389"
FT /product="hsa-miR-542-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 97 BP; 27 A; 23 C; 23 G; 0 T; 24 other;
cagaucucag acaucucggg gaucaucaug ucacgagaua ccagugugca cuugugacag 60
auugauaacu gaaaggucug ggagccacuc aucuuca 97
//
ID dre-mir-31 standard; RNA; DRE; 72 BP.
XX
AC MI0003691;
XX
DE Danio rerio miR-31 stem-loop
XX
RN [1]
RX PUBMED; 15919954.
RA Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de
RA Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH;
RT "MicroRNA expression in zebrafish embryonic development";
RL Science. 309:310-311(2005).
XX
DR ENTREZGENE; 100628781; mir31.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0003347"
FT /product="dre-miR-31"
FT /evidence=experimental
FT /experiment="array [1], in-situ [1]"
XX
SQ Sequence 72 BP; 16 A; 13 C; 19 G; 0 T; 24 other;
gaagagaugg caagauguug gcauagcugu uaauguuuau gggccugcua ugccuccaua 60
uugccauuuc ug 72
//
ID dre-mir-139 standard; RNA; DRE; 69 BP.
XX
AC MI0003693;
XX
DE Danio rerio miR-139 stem-loop
XX
RN [1]
RX PUBMED; 15919954.
RA Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de
RA Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH;
RT "MicroRNA expression in zebrafish embryonic development";
RL Science. 309:310-311(2005).
XX
DR ENTREZGENE; 100628843; mir139.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..24
FT /accession="MIMAT0003349"
FT /product="dre-miR-139-5p"
FT /evidence=experimental
FT /experiment="in-situ [1]"
FT miRNA 44..66
FT /accession="MIMAT0032008"
FT /product="dre-miR-139-3p"
FT /evidence=not_experimental
XX
SQ Sequence 69 BP; 13 A; 14 C; 21 G; 0 T; 21 other;
cuguauucua cagugcaugu gucuccagug uuucuauggc gacuggggag gcagcgcugu 60
uggaauaac 69
//
ID gga-mir-9-1 standard; RNA; GGA; 88 BP.
XX
AC MI0003694;
XX
DE Gallus gallus miR-9-1 stem-loop
XX
DR ENTREZGENE; 777892; MIR9-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0001195"
FT /product="gga-miR-9-5p"
FT /evidence=not_experimental
FT /similarity="MI0000466"
FT miRNA 54..74
FT /accession="MIMAT0003350"
FT /product="gga-miR-9-3p"
FT /evidence=not_experimental
FT /similarity="MI0000466"
XX
SQ Sequence 88 BP; 22 A; 14 C; 21 G; 0 T; 31 other;
uuggguuggu uuuucucuuu gguuaucuag cuguaugagu guaugugaua ucauaaagcu 60
agagaaccga auguaaaaac ccgcucgc 88
//
ID gga-mir-146b standard; RNA; GGA; 105 BP.
XX
AC MI0003695;
XX
DE Gallus gallus miR-146b stem-loop
XX
RN [1]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777893; MIR146B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0003351"
FT /product="gga-miR-146b-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0003129"
FT miRNA 59..78
FT /accession="MIMAT0003724"
FT /product="gga-miR-146b-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 105 BP; 29 A; 25 C; 25 G; 0 T; 26 other;
ggacuggcug cuuggcuuug agaacugaau uccauaggcg uuaaagcauc caaaaaugcc 60
cuauggauuc aguucugcag uugggcagca aauaaaccuc cagcc 105
//
ID gga-mir-193b standard; RNA; GGA; 83 BP.
XX
AC MI0003698;
XX
DE Gallus gallus miR-193b stem-loop
XX
RN [1]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777896; MIR193B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0026629"
FT /product="gga-miR-193b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 51..74
FT /accession="MIMAT0003353"
FT /product="gga-miR-193b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT /similarity="MI0003137"
XX
SQ Sequence 83 BP; 14 A; 17 C; 27 G; 0 T; 25 other;
gugguuccag agucgggguu uugggggcga gaugagcuua uguuuuaucc aacuggccca 60
caaagucccg cuuuuggugg uca 83
//
ID gga-mir-365-1 standard; RNA; GGA; 85 BP.
XX
AC MI0003703;
XX
DE Gallus gallus miR-365-1 stem-loop
XX
RN [1]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777901; MIR365-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0026630"
FT /product="gga-miR-365-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 54..75
FT /accession="MIMAT0003361"
FT /product="gga-miR-365-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT /similarity="MI0000767"
XX
SQ Sequence 85 BP; 23 A; 18 C; 19 G; 0 T; 25 other;
cgcagggaaa augagggacu uuugggggca gauguguuuc cauuacacua ucauaaugcc 60
ccuaaaaauc cuuauugcuc uugca 85
//
ID gga-mir-365-2 standard; RNA; GGA; 96 BP.
XX
AC MI0003704;
XX
DE Gallus gallus miR-365-2 stem-loop
XX
RN [1]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777902; MIR365-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0031075"
FT /product="gga-miR-365-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 57..78
FT /accession="MIMAT0003361"
FT /product="gga-miR-365-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT /similarity="MI0000769"
XX
SQ Sequence 96 BP; 29 A; 20 C; 21 G; 0 T; 26 other;
ggcagcaaga aaaaugaggg acuuucaggg gcagcugugu uuuacuaacc cagucauaau 60
gccccuaaaa auccuuauug uucuugcaau ggucaa 96
//
ID gga-mir-383 standard; RNA; GGA; 73 BP.
XX
AC MI0003706;
XX
DE Gallus gallus miR-383 stem-loop
XX
RN [1]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777904; MIR383.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0003363"
FT /product="gga-miR-383-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT /similarity="MI0000791"
FT miRNA 48..68
FT /accession="MIMAT0026631"
FT /product="gga-miR-383-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 73 BP; 20 A; 15 C; 21 G; 0 T; 17 other;
cuccucagau cagaagguga uuguggcuuu ggguaaauau ugagcagcca cagcacugcc 60
uggucagaaa gag 73
//
ID gga-mir-489 standard; RNA; GGA; 84 BP.
XX
AC MI0003708;
XX
DE Gallus gallus miR-489 stem-loop
XX
RN [1]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777906; MIR489.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0026632"
FT /product="gga-miR-489-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 51..73
FT /accession="MIMAT0003365"
FT /product="gga-miR-489-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT /similarity="MI0003124"
XX
SQ Sequence 84 BP; 16 A; 14 C; 25 G; 0 T; 29 other;
gugguggcuu gguggucgua uguaugacgu cauuuacuug gacuuuuagg agugacauca 60
uauguacggc ugcuaaacug cugc 84
//
ID gga-mir-490 standard; RNA; GGA; 93 BP.
XX
AC MI0003709;
XX
DE Gallus gallus miR-490 stem-loop
XX
RN [1]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777907; MIR490.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..37
FT /accession="MIMAT0026633"
FT /product="gga-miR-490-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 57..78
FT /accession="MIMAT0003366"
FT /product="gga-miR-490-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT /similarity="MI0003125"
XX
SQ Sequence 93 BP; 26 A; 21 C; 23 G; 0 T; 23 other;
aaguucaugg uucgacacca uggaucucca ggugggucaa gauuauagag auacaccaac 60
cuggaggacu ccaugcuguu gagcuguuca caa 93
//
ID gga-mir-499 standard; RNA; GGA; 91 BP.
XX
AC MI0003710;
XX
DE Gallus gallus miR-499 stem-loop
XX
RN [1]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777908; MIR499.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0003367"
FT /product="gga-miR-499-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT /similarity="MI0003183"
FT miRNA 55..76
FT /accession="MIMAT0026634"
FT /product="gga-miR-499-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 91 BP; 23 A; 15 C; 19 G; 0 T; 34 other;
uuugagggag cggcaguuaa gacuuguagu gauguuuaga uaauguauua caugaacauc 60
acuuuaaguc ugugcuacuu cucuccucau u 91
//
ID gga-mir-429 standard; RNA; GGA; 84 BP.
XX
AC MI0003714;
XX
DE Gallus gallus miR-429 stem-loop
XX
RN [1]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777912; MIR429.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0026635"
FT /product="gga-miR-429-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 52..73
FT /accession="MIMAT0003371"
FT /product="gga-miR-429-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT /similarity="MI0001643"
XX
SQ Sequence 84 BP; 18 A; 19 C; 19 G; 0 T; 28 other;
gccugcugau ugcugucuua ccaggcaaag uuagaucuag cuauuucugu cuaauacugu 60
cugguaaugc cgucaaucgc augg 84
//
ID mmu-mir-302c standard; RNA; MMU; 68 BP.
XX
AC MI0003717;
XX
DE Mus musculus miR-302c stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619327; Mir302c.
DR ENTREZGENE; 723835; Mir302c.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [1]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0003375"
FT /product="mmu-miR-302c-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
FT /similarity="MI0000773"
FT miRNA 44..65
FT /accession="MIMAT0003376"
FT /product="mmu-miR-302c-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
FT /similarity="MI0000773"
XX
SQ Sequence 68 BP; 15 A; 14 C; 18 G; 0 T; 21 other;
ccucugcuuu aacauggggu uaccugcugu guuaaacaaa agcaagugcu uccauguuuc 60
aguggggg 68
//
ID mmu-mir-302d standard; RNA; MMU; 66 BP.
XX
AC MI0003718;
XX
DE Mus musculus miR-302d stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619328; Mir302d.
DR ENTREZGENE; 723928; Mir302d.
XX
CC Mouse miR-302d was verified experimentally by Mineno et al using MPSS
CC technology [1]. The MPSS protocol used provides 22nt sequences, but the
CC true extents of the mature miRNA are not reliably obtained. The mature
CC sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [2]. The 5' end of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0017225"
FT /product="mmu-miR-302d-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 42..64
FT /accession="MIMAT0003377"
FT /product="mmu-miR-302d-3p"
FT /evidence=experimental
FT /experiment="MPSS [1], cloned [2], Illumina [3]"
FT /similarity="MI0000774"
XX
SQ Sequence 66 BP; 16 A; 11 C; 15 G; 0 T; 24 other;
ccuuuacuuu aacauggagg cacuugcugu gcauuuaaaa auaagugcuu ccauguuuga 60
gugugg 66
//
ID rno-mir-378a standard; RNA; RNO; 65 BP.
XX
AC MI0003719;
XX
DE Rattus norvegicus miR-378 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314258; Mir378.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0003378"
FT /product="rno-miR-378a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
FT /similarity="MI0000795"
FT miRNA 42..62
FT /accession="MIMAT0003379"
FT /product="rno-miR-378a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], SOLiD [3]"
XX
SQ Sequence 65 BP; 13 A; 17 C; 19 G; 0 T; 16 other;
gggcuccuga cuccaggucc uguguguuac cucgaaauag cacuggacuu ggagucagaa 60
ggccu 65
//
ID rno-mir-499 standard; RNA; RNO; 65 BP.
XX
AC MI0003721;
XX
DE Rattus norvegicus miR-499 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314091; Mir499.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..25
FT /accession="MIMAT0003381"
FT /product="rno-miR-499-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], SOLiD [2]"
FT miRNA 42..63
FT /accession="MIMAT0017227"
FT /product="rno-miR-499-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 65 BP; 14 A; 16 C; 15 G; 0 T; 20 other;
gcuguuaaga cuugcaguga uguuuagcuc cucuccaugu gaacaucaca gcaagucugu 60
gcugc 65
//
ID hsa-mir-758 standard; RNA; HSA; 88 BP.
XX
AC MI0003757;
XX
DE Homo sapiens miR-758 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 22282338.
RA Voellenkle C, Rooij Jv, Guffanti A, Brini E, Fasanaro P, Isaia E, Croft L,
RA David M, Capogrossi MC, Moles A, Felsani A, Martelli F;
RT "Deep-sequencing of endothelial cells exposed to hypoxia reveals the
RT complexity of known and novel microRNAs";
RL RNA. 18:472-484(2012).
XX
DR HGNC; 33133; MIR758.
DR ENTREZGENE; 768212; MIR758.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0022929"
FT /product="hsa-miR-758-5p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
FT miRNA 52..73
FT /accession="MIMAT0003879"
FT /product="hsa-miR-758-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
XX
SQ Sequence 88 BP; 20 A; 22 C; 21 G; 0 T; 25 other;
gccuggauac augagauggu ugaccagaga gcacacgcuu uauuugugcc guuugugacc 60
ugguccacua acccucagua ucuaaugc 88
//
ID hsa-mir-671 standard; RNA; HSA; 118 BP.
XX
AC MI0003760;
XX
DE Homo sapiens miR-671 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 33134; MIR671.
DR ENTREZGENE; 768213; MIR671.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..51
FT /accession="MIMAT0003880"
FT /product="hsa-miR-671-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT miRNA 68..88
FT /accession="MIMAT0004819"
FT /product="hsa-miR-671-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 118 BP; 20 A; 28 C; 47 G; 0 T; 23 other;
gcaggugaac uggcaggcca ggaagaggag gaagcccugg aggggcugga ggugauggau 60
guuuuccucc gguucucagg gcuccaccuc uuucgggccg uagagccagg gcuggugc 118
//
ID hsa-mir-767 standard; RNA; HSA; 109 BP.
XX
AC MI0003763;
XX
DE Homo sapiens miR-767 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
DR HGNC; 33136; MIR767.
DR ENTREZGENE; 768215; MIR767.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..49
FT /accession="MIMAT0003882"
FT /product="hsa-miR-767-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 61..83
FT /accession="MIMAT0003883"
FT /product="hsa-miR-767-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 109 BP; 19 A; 26 C; 24 G; 0 T; 40 other;
gcuuuuauau uguagguuuu ugcucaugca ccaugguugu cugagcaugc agcaugcuug 60
ucugcucaua ccccaugguu ucugagcagg aaccuucauu gucuacugc 109
//
ID hsa-mir-1296 standard; RNA; HSA; 92 BP.
XX
AC MI0003780;
XX
DE Homo sapiens miR-1296 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 18285502.
RA Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL,
RA Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA;
RT "Application of massively parallel sequencing to microRNA profiling and
RT discovery in human embryonic stem cells";
RL Genome Res. 18:610-621(2008).
XX
RN [3]
RX PUBMED; 19508715.
RA Nygaard S, Jacobsen A, Lindow M, Eriksen J, Balslev E, Flyger H, Tolstrup
RA N, Moller S, Krogh A, Litman T;
RT "Identification and analysis of miRNAs in human breast cancer and teratoma
RT samples using deep sequencing";
RL BMC Med Genomics. 2:35(2009).
XX
RN [4]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 35249; MIR1296.
DR ENTREZGENE; 100302150; MIR1296.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0005794"
FT /product="hsa-miR-1296-5p"
FT /evidence=experimental
FT /experiment="Illumina [2,4], 454 [3]"
FT miRNA 59..80
FT /accession="MIMAT0026637"
FT /product="hsa-miR-1296-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 92 BP; 16 A; 26 C; 27 G; 0 T; 23 other;
accuaccuaa cuggguuagg gcccuggcuc caucuccuuu aggaaaaccu ucugugggga 60
guggggcuuc gacccuaacc caggugggcu gu 92
//
ID hsa-mir-1271 standard; RNA; HSA; 86 BP.
XX
AC MI0003814;
XX
DE Homo sapiens miR-1271 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 18285502.
RA Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL,
RA Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA;
RT "Application of massively parallel sequencing to microRNA profiling and
RT discovery in human embryonic stem cells";
RL Genome Res. 18:610-621(2008).
XX
RN [3]
RX PUBMED; 19508715.
RA Nygaard S, Jacobsen A, Lindow M, Eriksen J, Balslev E, Flyger H, Tolstrup
RA N, Moller S, Krogh A, Litman T;
RT "Identification and analysis of miRNAs in human breast cancer and teratoma
RT samples using deep sequencing";
RL BMC Med Genomics. 2:35(2009).
XX
DR HGNC; 35252; MIR1271.
DR ENTREZGENE; 100302203; MIR1271.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0005796"
FT /product="hsa-miR-1271-5p"
FT /evidence=experimental
FT /experiment="Illumina [2], 454 [3]"
FT miRNA 51..72
FT /accession="MIMAT0022712"
FT /product="hsa-miR-1271-3p"
FT /evidence=not_experimental
XX
SQ Sequence 86 BP; 19 A; 21 C; 23 G; 0 T; 23 other;
cacccagauc agugcuuggc accuagcaag cacucaguaa auauuuguug agugccugcu 60
augugccagg cauugugcug agggcu 86
//
ID hsa-mir-1301 standard; RNA; HSA; 82 BP.
XX
AC MI0003815;
XX
DE Homo sapiens miR-1301 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 18285502.
RA Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL,
RA Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA;
RT "Application of massively parallel sequencing to microRNA profiling and
RT discovery in human embryonic stem cells";
RL Genome Res. 18:610-621(2008).
XX
RN [3]
RX PUBMED; 19144710.
RA Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G;
RT "Identification of novel Epstein-Barr virus microRNA genes from
RT nasopharyngeal carcinomas";
RL J Virol. 83:3333-3341(2009).
XX
RN [4]
RX PUBMED; 19508715.
RA Nygaard S, Jacobsen A, Lindow M, Eriksen J, Balslev E, Flyger H, Tolstrup
RA N, Moller S, Krogh A, Litman T;
RT "Identification and analysis of miRNAs in human breast cancer and teratoma
RT samples using deep sequencing";
RL BMC Med Genomics. 2:35(2009).
XX
RN [5]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 35253; MIR1301.
DR ENTREZGENE; 100302246; MIR1301.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..33
FT /accession="MIMAT0026639"
FT /product="hsa-miR-1301-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 48..71
FT /accession="MIMAT0005797"
FT /product="hsa-miR-1301-3p"
FT /evidence=experimental
FT /experiment="Illumina [2,5], 454 [3-4]"
XX
SQ Sequence 82 BP; 12 A; 21 C; 30 G; 0 T; 19 other;
ggauuguggg gggucgcucu aggcaccgca gcacugugcu ggggauguug cagcugccug 60
ggagugacuu cacacagucc uc 82
//
ID hsa-mir-454 standard; RNA; HSA; 115 BP.
XX
AC MI0003820;
XX
DE Homo sapiens miR-454 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 33137; MIR454.
DR ENTREZGENE; 768216; MIR454.
XX
CC The mature miRNA sequences were named miR-454-5p and miR-454-3p in [1] and
CC here. Landgraf et al. showed that the 3' product is the predominant one
CC [2]. The mature sequence shown here represents the most commonly cloned
CC form from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0003884"
FT /product="hsa-miR-454-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT miRNA 64..86
FT /accession="MIMAT0003885"
FT /product="hsa-miR-454-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 115 BP; 30 A; 18 C; 27 G; 0 T; 40 other;
ucuguuuauc accagauccu agaacccuau caauauuguc ucugcugugu aaauaguucu 60
gaguagugca auauugcuua uaggguuuug guguuuggaa agaacaaugg gcagg 115
//
ID hsa-mir-1185-2 standard; RNA; HSA; 86 BP.
XX
AC MI0003821;
XX
DE Homo sapiens miR-1185-2 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17922033.
RA Subramanian S, Lui WO, Lee CH, Espinosa I, Nielsen TO, Heinrich MC,
RA Corless CL, Fire AZ, van de Rijn M;
RT "MicroRNA expression signature of human sarcomas";
RL Oncogene. 27:2015-2026(2008).
XX
DR HGNC; 35254; MIR1185-2.
DR ENTREZGENE; 100302209; MIR1185-2.
XX
CC This sequence was proposed as a miRNA candidate by Berezikov et al by RAKE
CC analysis [1], and validated by cloning independently by Subramanian et al
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0005798"
FT /product="hsa-miR-1185-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 53..74
FT /accession="MIMAT0022713"
FT /product="hsa-miR-1185-2-3p"
FT /evidence=not_experimental
XX
SQ Sequence 86 BP; 25 A; 13 C; 20 G; 0 T; 28 other;
uuugguacuu aaagagagga uacccuuugu auguucacuu gauuaauggc gaauauacag 60
ggggagacuc ucauuugcgu aucaaa 86
//
ID hsa-mir-449c standard; RNA; HSA; 92 BP.
XX
AC MI0003823;
XX
DE Homo sapiens miR-449c stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 19390579.
RA Wyman SK, Parkin RK, Mitchell PS, Fritz BR, O'Briant K, Godwin AK, Urban
RA N, Drescher CW, Knudsen BS, Tewari M;
RT "Repertoire of microRNAs in epithelial ovarian cancer as determined by
RT next generation sequencing of small RNA cDNA libraries";
RL PLoS One. 4:e5311(2009).
XX
DR ENTREZGENE; 100313923; MIR449C.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al.
CC using the RAKE techniques [1]. Expression was later confirmed by Wyman et
CC al. [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..41
FT /accession="MIMAT0010251"
FT /product="hsa-miR-449c-5p"
FT /evidence=experimental
FT /experiment="RAKE [1], 454 [2]"
FT miRNA 57..79
FT /accession="MIMAT0013771"
FT /product="hsa-miR-449c-3p"
FT /evidence=experimental
FT /experiment="454 [2]"
XX
SQ Sequence 92 BP; 18 A; 17 C; 26 G; 0 T; 31 other;
gcugggaugu gucagguagg caguguauug cuagcggcug uuaaugauuu uaacaguugc 60
uaguugcacu ccucucuguu gcauucagaa gc 92
//
ID hsa-mir-769 standard; RNA; HSA; 118 BP.
XX
AC MI0003834;
XX
DE Homo sapiens miR-769 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
DR HGNC; 33138; MIR769.
DR ENTREZGENE; 768217; MIR769.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..51
FT /accession="MIMAT0003886"
FT /product="hsa-miR-769-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 69..91
FT /accession="MIMAT0003887"
FT /product="hsa-miR-769-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 118 BP; 11 A; 31 C; 42 G; 0 T; 34 other;
gccuuggugc ugauuccugg gcucugaccu gagaccucug gguucugagc ugugauguug 60
cucucgagcu gggaucuccg gggucuuggu ucagggccgg ggccucuggg uuccaagc 118
//
ID hsa-mir-766 standard; RNA; HSA; 111 BP.
XX
AC MI0003836;
XX
DE Homo sapiens miR-766 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
DR HGNC; 33139; MIR766.
DR ENTREZGENE; 768218; MIR766.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..50
FT /accession="MIMAT0022714"
FT /product="hsa-miR-766-5p"
FT /evidence=not_experimental
FT miRNA 65..86
FT /accession="MIMAT0003888"
FT /product="hsa-miR-766-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 111 BP; 21 A; 31 C; 31 G; 0 T; 28 other;
gcauccucag gaccugggcu ugggugguag gaggaauugg ugcuggucuu ucauuuugga 60
uuugacucca gccccacagc cucagccacc ccagccaauu gucauaggag c 111
//
ID hsa-mir-1185-1 standard; RNA; HSA; 86 BP.
XX
AC MI0003844;
XX
DE Homo sapiens miR-1185-1 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17922033.
RA Subramanian S, Lui WO, Lee CH, Espinosa I, Nielsen TO, Heinrich MC,
RA Corless CL, Fire AZ, van de Rijn M;
RT "MicroRNA expression signature of human sarcomas";
RL Oncogene. 27:2015-2026(2008).
XX
DR HGNC; 35257; MIR1185-1.
DR ENTREZGENE; 100302157; MIR1185-1.
XX
CC This sequence was proposed as a miRNA candidate by Berezikov et al by RAKE
CC analysis [1], and validated by cloning independently by Subramanian et al
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0005798"
FT /product="hsa-miR-1185-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 53..74
FT /accession="MIMAT0022838"
FT /product="hsa-miR-1185-1-3p"
FT /evidence=not_experimental
XX
SQ Sequence 86 BP; 24 A; 12 C; 21 G; 0 T; 29 other;
uuugguacuu gaagagagga uacccuuugu auguucacuu gauuaauggc gaauauacag 60
ggggagacuc uuauuugcgu aucaaa 86
//
ID hsa-mir-1298 standard; RNA; HSA; 112 BP.
XX
AC MI0003938;
XX
DE Homo sapiens miR-1298 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 18285502.
RA Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL,
RA Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA;
RT "Application of massively parallel sequencing to microRNA profiling and
RT discovery in human embryonic stem cells";
RL Genome Res. 18:610-621(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 35258; MIR1298.
DR ENTREZGENE; 100302153; MIR1298.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0005800"
FT /product="hsa-miR-1298-5p"
FT /evidence=experimental
FT /experiment="Illumina [2-3]"
FT miRNA 72..92
FT /accession="MIMAT0026641"
FT /product="hsa-miR-1298-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 112 BP; 31 A; 23 C; 23 G; 0 T; 35 other;
agacgaggag uuaagaguuc auucggcugu ccagauguau ccaaguaccc uguguuauuu 60
ggcaauaaau acaucugggc aacugacuga acuuuucacu uuucaugacu ca 112
//
ID mmu-mir-1247 standard; RNA; MMU; 82 BP.
XX
AC MI0004120;
XX
DE Mus musculus miR-1247 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526515; Mir1247.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al [1],
CC and confirmed later by sequencing [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0014800"
FT /product="mmu-miR-1247-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 52..72
FT /accession="MIMAT0014801"
FT /product="mmu-miR-1247-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 82 BP; 9 A; 34 C; 27 G; 0 T; 12 other;
cggccgccgg gcgcacccgu cccguucguc cccggacguu gcucucugcc ccgggaacgu 60
cgagacugga gcgcccgaac ug 82
//
ID mmu-mir-301b standard; RNA; MMU; 97 BP.
XX
AC MI0004122;
XX
DE Mus musculus miR-301b stem-loop
XX
RN [1]
RX PUBMED; 16973894.
RA Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP,
RA Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk
RA RH, Cuppen E, Mano H;
RT "Mouse microRNA profiles determined with a new and sensitive cloning
RT method";
RL Nucleic Acids Res. 34:e115(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17989215.
RA Calabrese JM, Seila AC, Yeo GW, Sharp PA;
RT "RNA sequence analysis defines Dicer's role in mouse embryonic stem
RT cells";
RL Proc Natl Acad Sci U S A. 104:18097-18102(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3691602; Mir301b.
DR ENTREZGENE; 791069; Mir301b.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0017232"
FT /product="mmu-miR-301b-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 55..77
FT /accession="MIMAT0004186"
FT /product="mmu-miR-301b-3p"
FT /evidence=experimental
FT /experiment="miRAP-cloned [1], cloned [2], 454 [3],
FT Illumina [4-5]"
XX
SQ Sequence 97 BP; 19 A; 22 C; 30 G; 0 T; 26 other;
uuuccugcug gcugcgggug cucugacuag guugcacuac ugugcuguga gaagcagugc 60
aaugguauug ucaaagcauc ugggaccagc cucgaag 97
//
ID mmu-mir-675 standard; RNA; MMU; 84 BP.
XX
AC MI0004123;
XX
DE Mus musculus miR-675 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629709; Mir675.
DR ENTREZGENE; 735280; Mir675.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0003725"
FT /product="mmu-miR-675-5p"
FT /evidence=experimental
FT /experiment="MPSS [1], Illumina [2-3]"
FT miRNA 49..70
FT /accession="MIMAT0003726"
FT /product="mmu-miR-675-3p"
FT /evidence=experimental
FT /experiment="MPSS [1], Illumina [2-3]"
XX
SQ Sequence 84 BP; 15 A; 25 C; 28 G; 0 T; 16 other;
ugcggcccag ggacuggugc ggaaagggcc cacaguggac uugguacacu guaugcccua 60
accgcucagu cccugggucu ggca 84
//
ID mmu-mir-744 standard; RNA; MMU; 100 BP.
XX
AC MI0004124;
XX
DE Mus musculus miR-744 stem-loop
XX
RN [1]
RX PUBMED; 16973894.
RA Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP,
RA Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk
RA RH, Cuppen E, Mano H;
RT "Mouse microRNA profiles determined with a new and sensitive cloning
RT method";
RL Nucleic Acids Res. 34:e115(2006).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17989215.
RA Calabrese JM, Seila AC, Yeo GW, Sharp PA;
RT "RNA sequence analysis defines Dicer's role in mouse embryonic stem
RT cells";
RL Proc Natl Acad Sci U S A. 104:18097-18102(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3691603; Mir744.
DR ENTREZGENE; 791070; Mir744.
XX
CC mir-744 was also named mir-803 in Takada et al., supplementary information
CC [1]. The mature sequence shown here represents the most commonly cloned
CC form from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0004187"
FT /product="mmu-miR-744-5p"
FT /evidence=experimental
FT /experiment="miRAP-cloned [1], cloned [2-3], 454 [4],
FT Illumina [5-6]"
FT miRNA 70..91
FT /accession="MIMAT0004820"
FT /product="mmu-miR-744-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [5-6]"
XX
SQ Sequence 100 BP; 22 A; 29 C; 27 G; 0 T; 22 other;
ggcugggcaa ggugcggggc uagggcuaac agcagucuua cugacgguuu ccuggaaacc 60
acacacaugc uguugccacu aaccucaacc uuacucgguc 100
//
ID mmu-mir-374b standard; RNA; MMU; 95 BP.
XX
AC MI0004125;
XX
DE Mus musculus miR-374b stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629958; Mir374.
DR ENTREZGENE; 751546; Mir374.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0003727"
FT /product="mmu-miR-374b-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0000782"
FT miRNA 59..80
FT /accession="MIMAT0003728"
FT /product="mmu-miR-374b-3p"
FT /evidence=experimental
FT /experiment="MPSS [1], Illumina [3-4]"
XX
SQ Sequence 95 BP; 24 A; 19 C; 22 G; 0 T; 30 other;
gaagaaaucc uacucgggug gauauaauac aaccugcuaa guguucuagc acuuagcagg 60
uuguauuauc auuguccgag guuauggcuc ucguc 95
//
ID mmu-mir-216b standard; RNA; MMU; 86 BP.
XX
AC MI0004126;
XX
DE Mus musculus miR-216b stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3640613; Mir216b.
DR ENTREZGENE; 735308; Mir216b.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0003729"
FT /product="mmu-miR-216b-5p"
FT /evidence=experimental
FT /experiment="MPSS [1], cloned [2], Illumina [3-4]"
FT miRNA 54..75
FT /accession="MIMAT0017233"
FT /product="mmu-miR-216b-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 86 BP; 27 A; 19 C; 19 G; 0 T; 21 other;
uuggcagacu gggaaaucuc ugcaggcaaa ugugauguca cugaagaaac cacacacuua 60
ccuguagaga uucuucaguc ugacaa 86
//
ID mmu-mir-592 standard; RNA; MMU; 96 BP.
XX
AC MI0004127;
XX
DE Mus musculus miR-592 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629661; Mir592.
DR ENTREZGENE; 735266; Mir592.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..40
FT /accession="MIMAT0003730"
FT /product="mmu-miR-592-5p"
FT /evidence=experimental
FT /experiment="MPSS [1], Illumina [2]"
FT miRNA 58..79
FT /accession="MIMAT0017234"
FT /product="mmu-miR-592-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 96 BP; 27 A; 18 C; 24 G; 0 T; 27 other;
ugauauuaug ccaugacauu gugucaauau gcgaugaugu guugugaugg cacagcguca 60
ucacguggug acgcaacauc augacguaag acauca 96
//
ID mmu-mir-758 standard; RNA; MMU; 81 BP.
XX
AC MI0004129;
XX
DE Mus musculus miR-758 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17989215.
RA Calabrese JM, Seila AC, Yeo GW, Sharp PA;
RT "RNA sequence analysis defines Dicer's role in mouse embryonic stem
RT cells";
RL Proc Natl Acad Sci U S A. 104:18097-18102(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3691604; Mir758.
DR ENTREZGENE; 791071; Mir758.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0017235"
FT /product="mmu-miR-758-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 49..67
FT /accession="MIMAT0003889"
FT /product="mmu-miR-758-3p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2], Illumina [3-4]"
XX
SQ Sequence 81 BP; 16 A; 19 C; 23 G; 0 T; 23 other;
ugggugcgug aggugguuga ccagagagca cacgcuauau uugugccguu ugugaccugg 60
uccacuaacc cucaguaucu a 81
//
ID mmu-mir-1264 standard; RNA; MMU; 86 BP.
XX
AC MI0004130;
XX
DE Mus musculus miR-1264 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526460; Mir1264.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al [1],
CC and confirmed later by sequencing [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0014802"
FT /product="mmu-miR-1264-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 55..76
FT /accession="MIMAT0014803"
FT /product="mmu-miR-1264-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 86 BP; 30 A; 13 C; 18 G; 0 T; 25 other;
ccuggcauau agcagguccu caauaaguau uuguugaaaa aauaaaugaa gcaacaaauc 60
uuauuugagc accuguuaug uggagg 86
//
ID mmu-mir-551b standard; RNA; MMU; 98 BP.
XX
AC MI0004131;
XX
DE Mus musculus miR-551b stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3691605; Mir551b.
DR ENTREZGENE; 791072; Mir551b.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..40
FT /accession="MIMAT0017236"
FT /product="mmu-miR-551b-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 57..77
FT /accession="MIMAT0003890"
FT /product="mmu-miR-551b-3p"
FT /evidence=experimental
FT /experiment="MPSS [1], cloned [2], Illumina [3-4]"
XX
SQ Sequence 98 BP; 24 A; 21 C; 30 G; 0 T; 23 other;
gugcucuugu ggcccaugaa aucaagcuug ggugagaccu ggugcagaac aggaaggcga 60
cccauacuug guuucagugg cugcaagaau gacugcau 98
//
ID mmu-mir-1249 standard; RNA; MMU; 98 BP.
XX
AC MI0004132;
XX
DE Mus musculus miR-1249 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17989215.
RA Calabrese JM, Seila AC, Yeo GW, Sharp PA;
RT "RNA sequence analysis defines Dicer's role in mouse embryonic stem
RT cells";
RL Proc Natl Acad Sci U S A. 104:18097-18102(2007).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526461; Mir1249.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al [1],
CC and confirmed later in mouse ES cells [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..45
FT /accession="MIMAT0014804"
FT /product="mmu-miR-1249-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 58..79
FT /accession="MIMAT0010560"
FT /product="mmu-miR-1249-3p"
FT /evidence=experimental
FT /experiment="RAKE [1], 454 [2], Illumina [3]"
XX
SQ Sequence 98 BP; 14 A; 31 C; 29 G; 0 T; 24 other;
cgauucuugu uugcgugggg aggagggagg ggaugggcca aguucccuau gccuggaacg 60
cccuuccccc ccuucuucac cuggcgaacu ccuacucg 98
//
ID mmu-mir-671 standard; RNA; MMU; 98 BP.
XX
AC MI0004133;
XX
DE Mus musculus miR-671 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629656; Mir671.
DR ENTREZGENE; 735264; Mir671.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0003731"
FT /product="mmu-miR-671-5p"
FT /evidence=experimental
FT /experiment="MPSS [1], RAKE [2], cloned [3], Illumina [4]"
FT miRNA 58..78
FT /accession="MIMAT0004821"
FT /product="mmu-miR-671-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 98 BP; 18 A; 24 C; 36 G; 0 T; 20 other;
uggcaggcca ggaagaggag gaagcccugg aggggcugga ggugauggau guuuuccucc 60
gguucucagg gcuccaccuc uuucgagccg uagagcca 98
//
ID mmu-mir-668 standard; RNA; MMU; 66 BP.
XX
AC MI0004134;
XX
DE Mus musculus miR-668 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629905; Mir668.
DR ENTREZGENE; 751523; Mir668.
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..25
FT /accession="MIMAT0017237"
FT /product="mmu-miR-668-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 43..66
FT /accession="MIMAT0003732"
FT /product="mmu-miR-668-3p"
FT /evidence=experimental
FT /experiment="MPSS [1], cloned [2], RAKE [2], Illumina [3]"
XX
SQ Sequence 66 BP; 12 A; 17 C; 20 G; 0 T; 17 other;
gguaagugug ccucggguga gcaugcacuu aauguaggug uaugucacuc ggcucggccc 60
acuacc 66
//
ID mmu-mir-1843a standard; RNA; MMU; 65 BP.
XX
AC MI0004155;
XX
DE Mus musculus miR-1843 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
RN [3]
RX PUBMED; 20935160.
RA Fehniger TA, Wylie T, Germino E, Leong JW, Magrini VJ, Koul S, Keppel CR,
RA Schneider SE, Koboldt DC, Sullivan RP, Heinz ME, Crosby SD, Nagarajan R,
RA Ramsingh G, Link DC, Ley TJ, Mardis ER;
RT "Next-generation sequencing identifies the natural killer cell microRNA
RT transcriptome";
RL Genome Res. 20:1590-1604(2010).
XX
DR ENTREZGENE; 100526530; Mir1843.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al [1],
CC and confirmed later by sequencing [2]. This sequence was retracted by the
CC authors prior to publication [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..24
FT /accession="MIMAT0014805"
FT /product="mmu-miR-1843a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2-3]"
FT miRNA 42..63
FT /accession="MIMAT0014806"
FT /product="mmu-miR-1843a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2-3]"
XX
SQ Sequence 65 BP; 16 A; 15 C; 15 G; 0 T; 19 other;
gaauauggag gucucugucu gacuuagaau agcuggcuga gucugaucgu ucaccuccau 60
acaac 65
//
ID mmu-mir-665 standard; RNA; MMU; 94 BP.
XX
AC MI0004171;
XX
DE Mus musculus miR-665 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629896; Mir665.
DR ENTREZGENE; 751555; Mir665.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..43
FT /accession="MIMAT0017238"
FT /product="mmu-miR-665-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 55..74
FT /accession="MIMAT0003733"
FT /product="mmu-miR-665-3p"
FT /evidence=experimental
FT /experiment="MPSS [1], cloned [2-3], Illumina [4-5]"
XX
SQ Sequence 94 BP; 17 A; 25 C; 25 G; 0 T; 27 other;
agaacagggu cuccuugagg ggccucugcc ucuauccagg auuauguuuu uaugaccagg 60
aggcugaggu cccuuacagg cggccucuua cucu 94
//
ID mmu-mir-667 standard; RNA; MMU; 92 BP.
XX
AC MI0004196;
XX
DE Mus musculus miR-667 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629904; Mir667.
DR ENTREZGENE; 751552; Mir667.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..39
FT /accession="MIMAT0017239"
FT /product="mmu-miR-667-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 56..78
FT /accession="MIMAT0003734"
FT /product="mmu-miR-667-3p"
FT /evidence=experimental
FT /experiment="MPSS [1], cloned [2], Illumina [3-4]"
XX
SQ Sequence 92 BP; 18 A; 31 C; 26 G; 0 T; 17 other;
guggguacug gccucggugc ugguggagca gugagcacgc cauacauuau aucugugaca 60
ccugccaccc agcccaaggc cccuaggccc ac 92
//
ID mmu-mir-770 standard; RNA; MMU; 94 BP.
XX
AC MI0004203;
XX
DE Mus musculus miR-770 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3691606; Mir770.
DR ENTREZGENE; 791079; Mir770.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0004822"
FT /product="mmu-miR-770-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 53..74
FT /accession="MIMAT0003891"
FT /product="mmu-miR-770-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 94 BP; 13 A; 32 C; 34 G; 0 T; 15 other;
gccaccuucu gugcccccag caccacgugu cugggccacg ugagcaacgc cacgugggcc 60
ugacguggag cuggggccgc aggggucuga uggc 94
//
ID mmu-mir-344d-3 standard; RNA; MMU; 80 BP.
XX
AC MI0004227;
XX
DE Mus musculus miR-344d-3 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526543; Mir344d-3.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al [1],
CC and confirmed later by sequencing [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0014807"
FT /product="mmu-miR-344d-3-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 52..73
FT /accession="MIMAT0014808"
FT /product="mmu-miR-344d-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 80 BP; 20 A; 18 C; 19 G; 0 T; 23 other;
agauuucauc agucaggcua gugguuauac uccaggacuu aucugguccu ggauauaacc 60
acugccagac ugaauggugc 80
//
ID mmu-mir-802 standard; RNA; MMU; 97 BP.
XX
AC MI0004249;
XX
DE Mus musculus miR-802 stem-loop
XX
RN [1]
RX PUBMED; 16973894.
RA Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP,
RA Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk
RA RH, Cuppen E, Mano H;
RT "Mouse microRNA profiles determined with a new and sensitive cloning
RT method";
RL Nucleic Acids Res. 34:e115(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3691608; Mir802.
DR ENTREZGENE; 791074; Mir802.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0004188"
FT /product="mmu-miR-802-5p"
FT /evidence=experimental
FT /experiment="miRAP-cloned [1], cloned [2], Illumina [3]"
FT miRNA 56..77
FT /accession="MIMAT0017240"
FT /product="mmu-miR-802-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 97 BP; 29 A; 22 C; 15 G; 0 T; 31 other;
gguccuauua uuugcaauca guaacaaaga uucauccuug ugucaaucau acaacacgga 60
gagucuuugu cacucagugu aauuaauagc cuucacc 97
//
ID mmu-mir-672 standard; RNA; MMU; 100 BP.
XX
AC MI0004258;
XX
DE Mus musculus miR-672 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629959; Mir672.
DR ENTREZGENE; 751535; Mir672.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..47
FT /accession="MIMAT0003735"
FT /product="mmu-miR-672-5p"
FT /evidence=experimental
FT /experiment="MPSS [1], cloned [2-3], Illumina [4-5]"
FT miRNA 63..83
FT /accession="MIMAT0017241"
FT /product="mmu-miR-672-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 100 BP; 24 A; 17 C; 25 G; 0 T; 34 other;
gauggugauc uagcccuuua guuuugaggu ugguguacug ugugugagua uacauauuua 60
ucacacacag ucacuaucuu cgaaagugag ggugcacauc 100
//
ID mmu-mir-670 standard; RNA; MMU; 100 BP.
XX
AC MI0004295;
XX
DE Mus musculus miR-670 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629629; Mir670.
DR ENTREZGENE; 735259; Mir670.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0003736"
FT /product="mmu-miR-670-5p"
FT /evidence=experimental
FT /experiment="MPSS [1], RAKE [2], Illumina [3,5]"
FT miRNA 60..84
FT /accession="MIMAT0017242"
FT /product="mmu-miR-670-3p"
FT /evidence=experimental
FT /experiment="454 [4], Illumina [5]"
XX
SQ Sequence 100 BP; 15 A; 25 C; 29 G; 0 T; 31 other;
gguuuggagg ugggccugac aucccugagu guauguggug aaccugaacu ugcccugggu 60
uuccucauau ccauucagga gugucagcug ccucuucgcu 100
//
ID mmu-mir-1298 standard; RNA; MMU; 98 BP.
XX
AC MI0004300;
XX
DE Mus musculus miR-1298 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526462; Mir1298.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al [1],
CC and confirmed later by sequencing [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0014809"
FT /product="mmu-miR-1298-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 66..87
FT /accession="MIMAT0014810"
FT /product="mmu-miR-1298-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 98 BP; 23 A; 22 C; 22 G; 0 T; 31 other;
gagggguuaa gaguucauuc ggcuguccag auguacccaa guacccuguu auuuggcaau 60
acauacaucu gggcaacuga uugaacuuuu cgcuucuc 98
//
ID mmu-mir-764 standard; RNA; MMU; 108 BP.
XX
AC MI0004310;
XX
DE Mus musculus miR-764 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3691610; Mir764.
DR ENTREZGENE; 791081; Mir764.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..45
FT /accession="MIMAT0003894"
FT /product="mmu-miR-764-5p"
FT /evidence=experimental
FT /experiment="PCR [1], RAKE [1], Illumina [2]"
FT miRNA 66..87
FT /accession="MIMAT0003895"
FT /product="mmu-miR-764-3p"
FT /evidence=experimental
FT /experiment="PCR [1], RAKE [1], Illumina [2]"
XX
SQ Sequence 108 BP; 28 A; 25 C; 25 G; 0 T; 30 other;
ucaacacaau cugaaucuug gaggcaggug cucacauguc cuccuccaug cuuauaaaua 60
cauggaggag gccauagugg caacugucac caugauugau uucguugg 108
//
ID mmu-mir-3059 standard; RNA; MMU; 81 BP.
XX
AC MI0004412;
XX
DE Mus musculus miR-3059 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526516; Mir3059.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al [1],
CC and confirmed later by sequencing [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0014811"
FT /product="mmu-miR-3059-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 49..70
FT /accession="MIMAT0014812"
FT /product="mmu-miR-3059-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 81 BP; 16 A; 22 C; 23 G; 0 T; 20 other;
ggugguacgc ccuuuccucu cugccccaua ggguguagcu cuaacuaccc ucuagggaag 60
agaagguugg gugaacagcc u 81
//
ID mmu-mir-3058 standard; RNA; MMU; 91 BP.
XX
AC MI0004418;
XX
DE Mus musculus miR-3058 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526463; Mir3058.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al [1],
CC and confirmed later by sequencing [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0014813"
FT /product="mmu-miR-3058-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 58..78
FT /accession="MIMAT0014814"
FT /product="mmu-miR-3058-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 91 BP; 14 A; 24 C; 25 G; 0 T; 28 other;
uccagcguug gagucagcca cggcuuaccu ggaagauuga augucuacuu ggcuuucuuc 60
cugucagccg ugggugccuc uugcuacugg a 91
//
ID mmu-mir-669a-1 standard; RNA; MMU; 97 BP.
XX
AC MI0004523;
XX
DE Mus musculus miR-669a-1 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629611; Mirn669a-1.
DR ENTREZGENE; 735256; Mir669a-1.
XX
CC The sequence of miR-669a-1 is of low complexity. The sequence maps
CC exactly to several genomic positions, and many more with 1 or 2
CC substitutions. Confidence in this miRNA might therefore be reduced.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..43
FT /accession="MIMAT0003477"
FT /product="mmu-miR-669a-5p"
FT /evidence=experimental
FT /experiment="MPSS [1], Illumina [2,4]"
FT miRNA 56..78
FT /accession="MIMAT0017243"
FT /product="mmu-miR-669a-3p"
FT /evidence=experimental
FT /experiment="454 [3], Illumina [4]"
XX
SQ Sequence 97 BP; 32 A; 17 C; 17 G; 0 T; 31 other;
uguaugugca uguguguaua guugugugug cauguucaug ucuauauuug aauauacaua 60
acauacacac acacguauaa acgcaagcac acauaca 97
//
ID mmu-mir-666 standard; RNA; MMU; 99 BP.
XX
AC MI0004553;
XX
DE Mus musculus miR-666 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629901; Mir666.
DR ENTREZGENE; 751521; Mir666.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0003737"
FT /product="mmu-miR-666-5p"
FT /evidence=experimental
FT /experiment="MPSS [1], cloned [2-3], Illumina [4-5]"
FT miRNA 56..77
FT /accession="MIMAT0004823"
FT /product="mmu-miR-666-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 99 BP; 19 A; 29 C; 35 G; 0 T; 16 other;
cugauucugc cugcguggag cgggcacagc ugugagagcc cccuagguac agcggggcug 60
cagcgugauc gccugcucac gcacaggaag ugacgacag 99
//
ID mmu-mir-496a standard; RNA; MMU; 79 BP.
XX
AC MI0004589;
XX
DE Mus musculus miR-496 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629907; Mir496.
DR ENTREZGENE; 751524; Mir496.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0017244"
FT /product="mmu-miR-496a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 47..68
FT /accession="MIMAT0003738"
FT /product="mmu-miR-496a-3p"
FT /evidence=experimental
FT /experiment="MPSS [1], Illumina [2-3]"
XX
SQ Sequence 79 BP; 16 A; 14 C; 19 G; 0 T; 30 other;
aguguucgaa uggagguugc ccauggugug uucauuuuau uuaugaugag uauuacaugg 60
ccaaucuccu uucggcacu 79
//
ID mmu-mir-673 standard; RNA; MMU; 91 BP.
XX
AC MI0004601;
XX
DE Mus musculus miR-673 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [3]
RX PUBMED; 16973894.
RA Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP,
RA Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk
RA RH, Cuppen E, Mano H;
RT "Mouse microRNA profiles determined with a new and sensitive cloning
RT method";
RL Nucleic Acids Res. 34:e115(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629894; Mir673.
DR ENTREZGENE; 751547; Mir673.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0003739"
FT /product="mmu-miR-673-5p"
FT /evidence=experimental
FT /experiment="MPSS [1], cloned [2,4], miRAP-cloned [3],
FT Illumina [5-6]"
FT miRNA 55..77
FT /accession="MIMAT0004824"
FT /product="mmu-miR-673-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 91 BP; 14 A; 29 C; 27 G; 0 T; 21 other;
uggagccuga ggggcucaca gcucuggucc uuggagcucc agagaaaaug uugcuccggg 60
gcugaguucu gugcaccccc cuugcccucc a 91
//
ID mmu-mir-760 standard; RNA; MMU; 119 BP.
XX
AC MI0004605;
XX
DE Mus musculus miR-760 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3691613; Mir760.
DR ENTREZGENE; 791077; Mir760.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 33..55
FT /accession="MIMAT0017245"
FT /product="mmu-miR-760-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 70..89
FT /accession="MIMAT0003898"
FT /product="mmu-miR-760-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], RAKE [1], Illumina [3-4]"
XX
SQ Sequence 119 BP; 21 A; 42 C; 38 G; 0 T; 18 other;
cgggaggaug ccucggugcg gggcgcgucg ccccccucag gccaccagag cccggauacc 60
ucagaaauuc ggcucugggu cuguggggag cgaaaugcaa cccaaacccc guuuccccg 119
//
ID mmu-mir-674 standard; RNA; MMU; 100 BP.
XX
AC MI0004611;
XX
DE Mus musculus miR-674 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [3]
RX PUBMED; 16973894.
RA Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP,
RA Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk
RA RH, Cuppen E, Mano H;
RT "Mouse microRNA profiles determined with a new and sensitive cloning
RT method";
RL Nucleic Acids Res. 34:e115(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629631; Mir674.
DR ENTREZGENE; 732489; Mir674.
XX
CC Landgraf et al. show that the 5' miRNA product is the predominant one [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0003740"
FT /product="mmu-miR-674-5p"
FT /evidence=experimental
FT /experiment="MPSS [1], cloned [2,4], miRAP-cloned [3],
FT Illumina [5-6]"
FT miRNA 60..81
FT /accession="MIMAT0003741"
FT /product="mmu-miR-674-3p"
FT /evidence=experimental
FT /experiment="MPSS [1], cloned [2,4], Illumina [5-6]"
XX
SQ Sequence 100 BP; 21 A; 27 C; 30 G; 0 T; 22 other;
ggccuaguca ucacccugag ccuugcacug agaugggagu gguguaaggc ucagguaugc 60
acagcuccca ucucagaaca aggcucgggu gugcucagcu 100
//
ID mmu-mir-488 standard; RNA; MMU; 109 BP.
XX
AC MI0004633;
XX
DE Mus musculus miR-488 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629597; Mir488.
DR ENTREZGENE; 735253; Mir488.
XX
CC The predominant miRNA cloned by Langraf et al. has a 3' terminal U
CC residue, which is incompatible with the genome sequence [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..47
FT /accession="MIMAT0003449"
FT /product="mmu-miR-488-5p"
FT /evidence=experimental
FT /experiment="Illumina [3-4]"
FT /similarity="MI0003123"
FT miRNA 65..85
FT /accession="MIMAT0003450"
FT /product="mmu-miR-488-3p"
FT /evidence=experimental
FT /experiment="MPSS [1], cloned [2], Illumina [3-4]"
XX
SQ Sequence 109 BP; 27 A; 23 C; 23 G; 0 T; 36 other;
uucgggugag agugagaauc cucucuccca gauaauagca cucucaaaca aguuuccaug 60
uuguuugaaa ggcuguuucu uggucagaag acucucaauu ucuucugga 109
//
ID mmu-mir-423 standard; RNA; MMU; 109 BP.
XX
AC MI0004637;
XX
DE Mus musculus miR-423 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629888; Mir423.
DR ENTREZGENE; 751519; Mir423.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..51
FT /accession="MIMAT0004825"
FT /product="mmu-miR-423-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 65..87
FT /accession="MIMAT0003454"
FT /product="mmu-miR-423-3p"
FT /evidence=experimental
FT /experiment="MPSS [1], cloned [2], Illumina [3-4]"
XX
SQ Sequence 109 BP; 25 A; 26 C; 30 G; 0 T; 28 other;
acuugugagg aaauaaagga aguuaggcug aggggcagag agcgagacuu uucuauuuuc 60
caaaagcucg gucugaggcc ccucagucuu gcuuccuacc ccgcgcuug 109
//
ID mmu-mir-679 standard; RNA; MMU; 74 BP.
XX
AC MI0004638;
XX
DE Mus musculus miR-679 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629899; Mir679.
DR ENTREZGENE; 751539; Mir679.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0003455"
FT /product="mmu-miR-679-5p"
FT /evidence=experimental
FT /experiment="MPSS [1], Illumina [2-3]"
FT miRNA 48..69
FT /accession="MIMAT0017248"
FT /product="mmu-miR-679-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 74 BP; 13 A; 15 C; 21 G; 0 T; 25 other;
cuauggcuuu ggacugugag gugacucuug gugugugaug gcuuuucagc aagguccucc 60
ucacaguagc uaua 74
//
ID mmu-mir-495 standard; RNA; MMU; 63 BP.
XX
AC MI0004639;
XX
DE Mus musculus miR-495 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629903; Mir495.
DR ENTREZGENE; 751522; Mir495.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..26
FT /accession="MIMAT0017249"
FT /product="mmu-miR-495-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 42..63
FT /accession="MIMAT0003456"
FT /product="mmu-miR-495-3p"
FT /evidence=experimental
FT /experiment="MPSS [1], cloned [2], Illumina [3-4]"
XX
SQ Sequence 63 BP; 17 A; 11 C; 11 G; 0 T; 24 other;
aaagaaguug cccauguuau uuuucgcuuu uauuugugac gaaacaaaca uggugcacuu 60
cuu 63
//
ID mmu-mir-146b standard; RNA; MMU; 109 BP.
XX
AC MI0004665;
XX
DE Mus musculus miR-146b stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629945; Mir146b.
DR ENTREZGENE; 751550; Mir146b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..50
FT /accession="MIMAT0003475"
FT /product="mmu-miR-146b-5p"
FT /evidence=experimental
FT /experiment="MPSS [1], cloned [2], Illumina [3-4]"
FT miRNA 67..88
FT /accession="MIMAT0004826"
FT /product="mmu-miR-146b-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 109 BP; 23 A; 30 C; 30 G; 0 T; 26 other;
gacugagaga acuuuggcca ccuggcucug agaacugaau uccauaggcu gugagcucua 60
gcagacgccc uagggacuca guucuggugc ccggcugugc uauaccauc 109
//
ID mmu-mir-669b standard; RNA; MMU; 97 BP.
XX
AC MI0004666;
XX
DE Mus musculus miR-669b stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629607; Mir669b.
DR ENTREZGENE; 735255; Mir669b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0003476"
FT /product="mmu-miR-669b-5p"
FT /evidence=experimental
FT /experiment="MPSS [1], Illumina [2]"
FT miRNA 62..84
FT /accession="MIMAT0017250"
FT /product="mmu-miR-669b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 97 BP; 30 A; 15 C; 19 G; 0 T; 33 other;
augaauguau gugcaugugu auauaguuuu gugugcaugu gcaugugugu cuauuaaugu 60
acauauacau acacacaaac auauacacgc augcgca 97
//
ID mmu-mir-669a-2 standard; RNA; MMU; 97 BP.
XX
AC MI0004667;
XX
DE Mus musculus miR-669a-2 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629622; Mir669a-2.
DR ENTREZGENE; 735258; Mir669a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..45
FT /accession="MIMAT0003477"
FT /product="mmu-miR-669a-5p"
FT /evidence=experimental
FT /experiment="MPSS [1], Illumina [2-3]"
FT miRNA 58..80
FT /accession="MIMAT0017243"
FT /product="mmu-miR-669a-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 97 BP; 32 A; 18 C; 17 G; 0 T; 30 other;
cauguaugug caugugugua uaguugugug ugcauguuca ugucuauauu ugaauauaca 60
uaacauacac acacacguau aaacgcaagc acacaca 97
//
ID mmu-mir-669a-3 standard; RNA; MMU; 109 BP.
XX
AC MI0004668;
XX
DE Mus musculus miR-669a-3 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629609; Mir669a-3.
DR ENTREZGENE; 735272; Mir669a-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..51
FT /accession="MIMAT0003477"
FT /product="mmu-miR-669a-5p"
FT /evidence=experimental
FT /experiment="MPSS [1], Illumina [2-3]"
FT miRNA 64..86
FT /accession="MIMAT0017251"
FT /product="mmu-miR-669a-3-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 109 BP; 35 A; 21 C; 18 G; 0 T; 35 other;
uuccuccaug uaugugcaug uguguauagu ugugugugca uguucauguc uauauuugaa 60
uauacauaac auacacacac auguauaaac gcaagcacac auacacaga 109
//
ID mmu-mir-467b standard; RNA; MMU; 73 BP.
XX
AC MI0004671;
XX
DE Mus musculus miR-467b stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629617; Mir467b.
DR ENTREZGENE; 735257; Mir467b.
XX
CC The sequence of miR-467 is of low complexity. The sequence maps exactly
CC to several genomic positions, and many more with 1 or 2 substitutions.
CC Confidence in this miRNA might therefore be reduced.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0005448"
FT /product="mmu-miR-467b-5p"
FT /evidence=experimental
FT /experiment="MPSS [1], Illumina [2-3]"
FT miRNA 46..67
FT /accession="MIMAT0003478"
FT /product="mmu-miR-467b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2-3]"
FT /similarity="MI0002402"
XX
SQ Sequence 73 BP; 22 A; 18 C; 12 G; 0 T; 21 other;
ccgugugcgu aagugccugc auguauaugc guguauauuu uaugcauaua cauacacaca 60
ccaacacaca cau 73
//
ID mmu-mir-669c standard; RNA; MMU; 109 BP.
XX
AC MI0004673;
XX
DE Mus musculus miR-669c stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629619; Mir669c.
DR ENTREZGENE; 735273; Mir669c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0003479"
FT /product="mmu-miR-669c-5p"
FT /evidence=experimental
FT /experiment="MPSS [1], cloned [2], Illumina [3-4]"
FT miRNA 64..85
FT /accession="MIMAT0017253"
FT /product="mmu-miR-669c-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 109 BP; 38 A; 21 C; 22 G; 0 T; 28 other;
ccuccaugua ugugcaugug uguauaguug uguguggaug uguguauuug cauauaaaua 60
acauacacac acacacacaa guaaacacaa gugcacaaac agacacagg 109
//
ID mmu-mir-297b standard; RNA; MMU; 109 BP.
XX
AC MI0004674;
XX
DE Mus musculus miR-297b stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629625; Mir297b.
DR ENTREZGENE; 735281; Mir297b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0003480"
FT /product="mmu-miR-297b-5p"
FT /evidence=experimental
FT /experiment="MPSS [1], Illumina [3-4]"
FT miRNA 57..78
FT /accession="MIMAT0004827"
FT /product="mmu-miR-297b-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 109 BP; 42 A; 19 C; 16 G; 0 T; 32 other;
ucuauuugcu uguguguaua uguaugugug caugaacaug uguauaugaa uauacauaua 60
cauacacaca uacccauaca aacaugcaua caaacacaca gaaaaugga 109
//
ID mmu-mir-499 standard; RNA; MMU; 79 BP.
XX
AC MI0004676;
XX
DE Mus musculus miR-499 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629633; Mir499.
DR ENTREZGENE; 735275; Mir499.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0003482"
FT /product="mmu-miR-499-5p"
FT /evidence=experimental
FT /experiment="MPSS [1], cloned [2], Illumina [3-4]"
FT miRNA 50..72
FT /accession="MIMAT0017254"
FT /product="mmu-miR-499-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 79 BP; 15 A; 18 C; 23 G; 0 T; 23 other;
gggugggcag cuguuaagac uugcagugau guuuagcucc ucugcaugug aacaucacag 60
caagucugug cugcugccu 79
//
ID mmu-mir-491 standard; RNA; MMU; 86 BP.
XX
AC MI0004680;
XX
DE Mus musculus miR-491 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629651; Mir491.
DR ENTREZGENE; 735282; Mir491.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0003486"
FT /product="mmu-miR-491-5p"
FT /evidence=experimental
FT /experiment="MPSS [1], Illumina [2-3]"
FT miRNA 52..73
FT /accession="MIMAT0017255"
FT /product="mmu-miR-491-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 86 BP; 23 A; 19 C; 21 G; 0 T; 23 other;
aauugacuua gcugggaagu ggggaacccu uccaugagga guagaacacu ccuuaugcaa 60
gauucccuuc uaccugacug aguuga 86
//
ID mmu-mir-698 standard; RNA; MMU; 109 BP.
XX
AC MI0004682;
XX
DE Mus musculus miR-698 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
DR MGI; 3629653; Mir698.
DR ENTREZGENE; 735263; Mir698.
XX
FH Key Location/Qualifiers
FH
FT miRNA 38..58
FT /accession="MIMAT0022930"
FT /product="mmu-miR-698-5p"
FT /evidence=not_experimental
FT miRNA 72..90
FT /accession="MIMAT0003488"
FT /product="mmu-miR-698-3p"
FT /evidence=experimental
FT /experiment="MPSS [1]"
XX
SQ Sequence 109 BP; 19 A; 25 C; 33 G; 0 T; 32 other;
ucaucucugc ccucacugua agggagggug guggcuaugu gggugggaca gggauguuca 60
guugcuaaag acauucucgu uuccuucccu cagugucccc agaugguga 109
//
ID mmu-mir-700 standard; RNA; MMU; 79 BP.
XX
AC MI0004684;
XX
DE Mus musculus miR-700 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629655; Mir700.
DR ENTREZGENE; 735285; Mir700.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0017256"
FT /product="mmu-miR-700-5p"
FT /evidence=experimental
FT /experiment="454 [3], Illumina [4]"
FT miRNA 53..73
FT /accession="MIMAT0003490"
FT /product="mmu-miR-700-3p"
FT /evidence=experimental
FT /experiment="MPSS [1], Illumina [2,4]"
XX
SQ Sequence 79 BP; 18 A; 23 C; 23 G; 0 T; 15 other;
uucacuggga guaaggcucc uuccugugcu ugcaggggag aaauacgaac ugcacgcggg 60
aaccgagucc acccccagu 79
//
ID mmu-mir-701 standard; RNA; MMU; 109 BP.
XX
AC MI0004685;
XX
DE Mus musculus miR-701 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629658; Mir701.
DR ENTREZGENE; 735278; Mir701.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..47
FT /accession="MIMAT0003491"
FT /product="mmu-miR-701-5p"
FT /evidence=experimental
FT /experiment="MPSS [1], Illumina [2]"
FT miRNA 65..84
FT /accession="MIMAT0017257"
FT /product="mmu-miR-701-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 109 BP; 34 A; 21 C; 25 G; 0 T; 29 other;
guggagcauc uaccuugagc aaguaauuag ccgcugaaau agauggauug uauagaugag 60
guucuaucua uuaaagaggc uagccacuua ucaagugcua acagcccac 109
//
ID mmu-mir-708 standard; RNA; MMU; 109 BP.
XX
AC MI0004692;
XX
DE Mus musculus miR-708 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 16973894.
RA Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP,
RA Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk
RA RH, Cuppen E, Mano H;
RT "Mouse microRNA profiles determined with a new and sensitive cloning
RT method";
RL Nucleic Acids Res. 34:e115(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629686; Mir708.
DR ENTREZGENE; 735284; Mir708.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..49
FT /accession="MIMAT0004828"
FT /product="mmu-miR-708-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT miRNA 73..94
FT /accession="MIMAT0003498"
FT /product="mmu-miR-708-3p"
FT /evidence=experimental
FT /experiment="MPSS [1], miRAP-cloned [2], cloned [3],
FT Illumina [4-5]"
XX
SQ Sequence 109 BP; 27 A; 22 C; 33 G; 0 T; 27 other;
cuguguuuga aauggggacu gcccucaagg agcuuacaau cuagcugggg guagaugacu 60
ugcacuugaa cacaacuaga cugugagcuu cuagagggca ggggccuua 109
//
ID mmu-mir-500 standard; RNA; MMU; 92 BP.
XX
AC MI0004702;
XX
DE Mus musculus miR-500 stem-loop
XX
RN [1]
RX PUBMED; 16566924.
RA Wheeler G, Ntounia-Fousara S, Granda B, Rathjen T, Dalmay T;
RT "Identification of new central nervous system specific mouse microRNAs";
RL FEBS Lett. 580:2195-2200(2006).
XX
RN [2]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3624341; Mir500.
DR ENTREZGENE; 723974; Mir500.
XX
CC Mouse miR-500 was identified independently by two groups. Wheeler et al
CC cloned a mature product with the same length as the human ortholog
CC (MIR:MI0003184) [1]. Mineno et al report a shorter mature product with 1
CC additional base at the 5' end and 3 fewer at the 3' end
CC (AAUGCACCUGGGCAAGGGUU), referred to as miR-500b in [2]. The mature
CC sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [3]. The 5' end of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..45
FT /accession="MIMAT0017258"
FT /product="mmu-miR-500-5p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
FT miRNA 59..80
FT /accession="MIMAT0003507"
FT /product="mmu-miR-500-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], insitu [1], Northern [1], MPSS
FT [2], Illumina [4,6]"
XX
SQ Sequence 92 BP; 17 A; 27 C; 22 G; 0 T; 26 other;
cuccucugcu cccccucucu aauccuugcu aucugggugc uuagugcuau cucaaugcaa 60
ugcaccuggg caaggguuca gagaagguga gc 92
//
ID mmu-mir-501 standard; RNA; MMU; 109 BP.
XX
AC MI0004703;
XX
DE Mus musculus miR-501 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629949; Mir501.
DR ENTREZGENE; 751560; Mir501.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0003508"
FT /product="mmu-miR-501-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0003185"
FT miRNA 61..82
FT /accession="MIMAT0003509"
FT /product="mmu-miR-501-3p"
FT /evidence=experimental
FT /experiment="MPSS [1], cloned [2], Illumina [3-4]"
XX
SQ Sequence 109 BP; 21 A; 26 C; 29 G; 0 T; 33 other;
cuucugcucu gcucauccuc ucuaauccuu ugucccuggg ugaaaaugcu auuuguaugc 60
aaugcacccg ggcaaggauu uggggaaggu gagccugauc ugcauggag 109
//
ID mmu-mir-450b standard; RNA; MMU; 82 BP.
XX
AC MI0004705;
XX
DE Mus musculus miR-450b stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629953; Mir450b.
DR ENTREZGENE; 751532; Mir450b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0003511"
FT /product="mmu-miR-450b-5p"
FT /evidence=experimental
FT /experiment="MPSS [1], cloned [2], Illumina [3-4]"
FT miRNA 50..71
FT /accession="MIMAT0003512"
FT /product="mmu-miR-450b-3p"
FT /evidence=experimental
FT /experiment="MPSS [1], cloned [2], Illumina [3-4]"
XX
SQ Sequence 82 BP; 26 A; 11 C; 14 G; 0 T; 31 other;
gauacagaau uauuuuugca guauguuccu gaauacauaa cauaagcgua uugggaacau 60
uuugcaugca uaauuuugua uc 82
//
ID bta-mir-26a-2 standard; RNA; BTA; 84 BP.
XX
AC MI0004731;
XX
DE Bos taurus miR-26a-2 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
RN [3]
RX PUBMED; 19267191.
RA Long JE, Chen HX;
RT "Identification and characteristics of cattle microRNAs by homology
RT searching and small RNA cloning";
RL Biochem Genet. 47:329-343(2009).
XX
DR ENTREZGENE; 790971; MIR26A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0003516"
FT /product="bta-miR-26a"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
XX
SQ Sequence 84 BP; 15 A; 16 C; 24 G; 0 T; 29 other;
ggcuguggcu ggauucaagu aauccaggau aggcuguuuc caucugugag gccuauucuu 60
gauuacuugu uucuggaggc agcu 84
//
ID bta-mir-18b standard; RNA; BTA; 75 BP.
XX
AC MI0004732;
XX
DE Bos taurus miR-18b stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
DR ENTREZGENE; 790972; MIR18B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0003517"
FT /product="bta-miR-18b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 75 BP; 18 A; 18 C; 17 G; 0 T; 22 other;
cuuguguuaa ggugcaucua gugcaguuag ugaagcagcu cagaaucuac ugcccuaaau 60
gcuccuucug gcaca 75
//
ID bta-mir-29a standard; RNA; BTA; 64 BP.
XX
AC MI0004733;
XX
DE Bos taurus miR-29a stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
DR ENTREZGENE; 790973; MIR29A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 41..63
FT /accession="MIMAT0003518"
FT /product="bta-miR-29a"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 64 BP; 17 A; 10 C; 11 G; 0 T; 26 other;
augacugauu ucuuuuggug uucagaguca auauaauuuu cuagcaccau cugaaaucgg 60
uuau 64
//
ID bta-let-7f-2 standard; RNA; BTA; 83 BP.
XX
AC MI0004734;
XX
DE Bos taurus let-7f-2 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
RN [3]
RX PUBMED; 19267191.
RA Long JE, Chen HX;
RT "Identification and characteristics of cattle microRNAs by homology
RT searching and small RNA cloning";
RL Biochem Genet. 47:329-343(2009).
XX
DR ENTREZGENE; 790974; MIRLET7F-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0003519"
FT /product="bta-let-7f"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
XX
SQ Sequence 83 BP; 20 A; 15 C; 20 G; 0 T; 28 other;
ugugggauga gguaguagau uguauaguuu uagggucaua ccccaucuug gagauaacua 60
uacagucuac ugucuuuccc acg 83
//
ID bta-mir-148a standard; RNA; BTA; 68 BP.
XX
AC MI0004737;
XX
DE Bos taurus miR-148a stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 19267191.
RA Long JE, Chen HX;
RT "Identification and characteristics of cattle microRNAs by homology
RT searching and small RNA cloning";
RL Biochem Genet. 47:329-343(2009).
XX
DR ENTREZGENE; 790977; MIR148A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 44..65
FT /accession="MIMAT0003522"
FT /product="bta-miR-148a"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 68 BP; 21 A; 15 C; 15 G; 0 T; 17 other;
gaggcaaagu ucugagacac uccgacucug aauaugauag aagucagugc acuacagaac 60
uuugucuc 68
//
ID bta-mir-151 standard; RNA; BTA; 69 BP.
XX
AC MI0004738;
XX
DE Bos taurus miR-151 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
DR ENTREZGENE; 790978; MIR151.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..28
FT /accession="MIMAT0003523"
FT /product="bta-miR-151-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 44..64
FT /accession="MIMAT0003524"
FT /product="bta-miR-151-3p"
FT /evidence=not_experimental
FT /similarity="MI0000173"
XX
SQ Sequence 69 BP; 15 A; 23 C; 16 G; 0 T; 15 other;
ccugcccucg aggagcucac agucuaguac gucucauccc cuacuagacu gaagcuccuu 60
gaggacagg 69
//
ID bta-mir-18a standard; RNA; BTA; 71 BP.
XX
AC MI0004740;
XX
DE Bos taurus miR-18a stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
DR ENTREZGENE; 790980; MIR18A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0003526"
FT /product="bta-miR-18a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 71 BP; 17 A; 15 C; 17 G; 0 T; 22 other;
uguucuaagg ugcaucuagu gcagauagug aaguagauua gcaucuacug cccuaagugc 60
uccuucuggc a 71
//
ID bta-mir-20a standard; RNA; BTA; 71 BP.
XX
AC MI0004741;
XX
DE Bos taurus miR-20a stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
DR ENTREZGENE; 790981; MIR20A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0003527"
FT /product="bta-miR-20a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 71 BP; 20 A; 11 C; 16 G; 0 T; 24 other;
guagcacuaa agugcuuaua gugcagguag uguuuaguua ucuacugcau uaugagcacu 60
uaaaguacug c 71
//
ID bta-mir-21 standard; RNA; BTA; 72 BP.
XX
AC MI0004742;
XX
DE Bos taurus miR-21 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
RN [3]
RX PUBMED; 19267191.
RA Long JE, Chen HX;
RT "Identification and characteristics of cattle microRNAs by homology
RT searching and small RNA cloning";
RL Biochem Genet. 47:329-343(2009).
XX
DR ENTREZGENE; 790982; MIR21.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..31
FT /accession="MIMAT0003528"
FT /product="bta-miR-21-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
FT miRNA 47..68
FT /accession="MIMAT0003745"
FT /product="bta-miR-21-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 72 BP; 16 A; 14 C; 21 G; 0 T; 21 other;
ugucggguag cuuaucagac ugauguugac uguugaaucu cauggcaaca gcagucgaug 60
ggcugucuga ca 72
//
ID bta-mir-26b standard; RNA; BTA; 85 BP.
XX
AC MI0004745;
XX
DE Bos taurus miR-26b stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 19267191.
RA Long JE, Chen HX;
RT "Identification and characteristics of cattle microRNAs by homology
RT searching and small RNA cloning";
RL Biochem Genet. 47:329-343(2009).
XX
DR ENTREZGENE; 790985; MIR26B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0003531"
FT /product="bta-miR-26b"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 85 BP; 12 A; 24 C; 26 G; 0 T; 23 other;
ugcccgggac ccaguucaag uaauucagga uagguugugu gcuguccagc cuguucucca 60
uuacuuggcu cgggggccgg ugccc 85
//
ID bta-mir-27a standard; RNA; BTA; 78 BP.
XX
AC MI0004746;
XX
DE Bos taurus miR-27a stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 19633723.
RA Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ;
RT "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed
RT upon viral infection";
RL PLoS One. 4:e6349(2009).
XX
DR ENTREZGENE; 790986; MIR27A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0012532"
FT /product="bta-miR-27a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 54..73
FT /accession="MIMAT0003532"
FT /product="bta-miR-27a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
XX
SQ Sequence 78 BP; 14 A; 22 C; 24 G; 0 T; 18 other;
uggccugggg agcagggcuu agcugcuugu gagcaggucc acaucaaauc guguucacag 60
uggcuaaguu ccgccccc 78
//
ID bta-mir-30d standard; RNA; BTA; 70 BP.
XX
AC MI0004747;
XX
DE Bos taurus miR-30d stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
DR ENTREZGENE; 790987; MIR30D.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..29
FT /accession="MIMAT0003533"
FT /product="bta-miR-30d"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 70 BP; 17 A; 18 C; 15 G; 0 T; 20 other;
guuguuguaa acauccccga cuggaagcug uaccacacag cuaagcuuuc agucagaugu 60
uugcugcuac 70
//
ID bta-mir-99a standard; RNA; BTA; 81 BP.
XX
AC MI0004751;
XX
DE Bos taurus miR-99a stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
RN [3]
RX PUBMED; 19267191.
RA Long JE, Chen HX;
RT "Identification and characteristics of cattle microRNAs by homology
RT searching and small RNA cloning";
RL Biochem Genet. 47:329-343(2009).
XX
DR ENTREZGENE; 790991; MIR99A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0003537"
FT /product="bta-miR-99a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Array [2], qRT-PCR [2]"
FT miRNA 50..68
FT /accession="MIMAT0012533"
FT /product="bta-miR-99a-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 81 BP; 16 A; 20 C; 23 G; 0 T; 22 other;
cccauuggca uaaacccgua gauccgaucu uguggugaag uggaccgcac aagcucgcuu 60
cuaugggucu gugucagugu g 81
//
ID bta-mir-125a standard; RNA; BTA; 86 BP.
XX
AC MI0004752;
XX
DE Bos taurus miR-125a stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
RN [3]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
DR ENTREZGENE; 790992; MIR125A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0003538"
FT /product="bta-miR-125a"
FT /evidence=experimental
FT /experiment="cloned [1-2], Array [3], qRT-PCR [3]"
XX
SQ Sequence 86 BP; 11 A; 27 C; 29 G; 0 T; 19 other;
ugccggccuc ugcgucccug agacccuuua accugugagg acguccaggg ucacagguga 60
gguucuuggg agccuggcgu ccggcc 86
//
ID bta-mir-125b-1 standard; RNA; BTA; 88 BP.
XX
AC MI0004753;
XX
DE Bos taurus miR-125b-1 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
RN [3]
RX PUBMED; 19267191.
RA Long JE, Chen HX;
RT "Identification and characteristics of cattle microRNAs by homology
RT searching and small RNA cloning";
RL Biochem Genet. 47:329-343(2009).
XX
DR ENTREZGENE; 790993; MIR125B-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0003539"
FT /product="bta-miR-125b"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
XX
SQ Sequence 88 BP; 15 A; 27 C; 23 G; 0 T; 23 other;
cgcgcgccuc ucaaucccug agacccuaac uugugauguu uaccguuuaa auccacgggu 60
uaggcucuug ggagcugcga gucgcgcc 88
//
ID bta-mir-126 standard; RNA; BTA; 73 BP.
XX
AC MI0004754;
XX
DE Bos taurus miR-126 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
RN [3]
RX PUBMED; 19267191.
RA Long JE, Chen HX;
RT "Identification and characteristics of cattle microRNAs by homology
RT searching and small RNA cloning";
RL Biochem Genet. 47:329-343(2009).
XX
DR ENTREZGENE; 790994; MIR126.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0004328"
FT /product="bta-miR-126-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 47..67
FT /accession="MIMAT0003540"
FT /product="bta-miR-126-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
XX
SQ Sequence 73 BP; 18 A; 16 C; 17 G; 0 T; 22 other;
ugacgggaca uuauuacuuu ugguacgcgc ugugacacuu caaacucgua ccgugaguaa 60
uaaugcgcug uca 73
//
ID bta-mir-128-1 standard; RNA; BTA; 82 BP.
XX
AC MI0004755;
XX
DE Bos taurus miR-128-1 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
DR ENTREZGENE; 790995; MIR128-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..70
FT /accession="MIMAT0003541"
FT /product="bta-miR-128"
FT /evidence=experimental
FT /experiment="cloned [1], Array [2], qRT-PCR [2]"
XX
SQ Sequence 82 BP; 13 A; 19 C; 22 G; 0 T; 28 other;
ugagcuguug gauucggggc cguagcacug ucugagaggu uuacauuucu cacagugaac 60
cggucucuuu uucagcugcu uc 82
//
ID bta-mir-145 standard; RNA; BTA; 88 BP.
XX
AC MI0004756;
XX
DE Bos taurus miR-145 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
RN [3]
RX PUBMED; 19267191.
RA Long JE, Chen HX;
RT "Identification and characteristics of cattle microRNAs by homology
RT searching and small RNA cloning";
RL Biochem Genet. 47:329-343(2009).
XX
DR ENTREZGENE; 790996; MIR145.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0003542"
FT /product="bta-miR-145"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
XX
SQ Sequence 88 BP; 18 A; 21 C; 21 G; 0 T; 28 other;
caccuugucc ucacggucca guuuucccag gaaucccuua gaugcuaaga uggggauucc 60
uggaaauacu guucuugagg ucaugguu 88
//
ID bta-mir-199a-1 standard; RNA; BTA; 104 BP.
XX
AC MI0004758;
XX
DE Bos taurus miR-199a-1 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
RN [3]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 790998; MIR199A-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..52
FT /accession="MIMAT0003544"
FT /product="bta-miR-199a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
FT miRNA 70..91
FT /accession="MIMAT0003746"
FT /product="bta-miR-199a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
XX
SQ Sequence 104 BP; 21 A; 26 C; 30 G; 0 T; 27 other;
uggaagcuuc uggagauccu gcuccgucgc cccaguguuc agacuaccug uucaggacaa 60
ugccguugua caguagucug cacauugguu agacugggca aggg 104
//
ID bta-mir-205 standard; RNA; BTA; 69 BP.
XX
AC MI0004759;
XX
DE Bos taurus miR-205 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
DR ENTREZGENE; 790999; MIR205.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0003545"
FT /product="bta-miR-205"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 69 BP; 14 A; 19 C; 16 G; 0 T; 20 other;
cucuuguccu ucauuccacc ggagucuguc ucguacccaa ccagauuuca guggagugaa 60
guucaggag 69
//
ID bta-mir-27b standard; RNA; BTA; 97 BP.
XX
AC MI0004760;
XX
DE Bos taurus miR-27b stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
DR ENTREZGENE; 791000; MIR27B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..81
FT /accession="MIMAT0003546"
FT /product="bta-miR-27b"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 97 BP; 21 A; 20 C; 29 G; 0 T; 27 other;
accucucuga cgaggugcag agcuuagcug auuggugaac agugacuggu uuccgcuuug 60
uucacagugg cuaaguucug caccugaaga gaaggug 97
//
ID bta-mir-30b standard; RNA; BTA; 88 BP.
XX
AC MI0004761;
XX
DE Bos taurus miR-30b stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
RN [3]
RX PUBMED; 19633723.
RA Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ;
RT "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed
RT upon viral infection";
RL PLoS One. 4:e6349(2009).
XX
DR ENTREZGENE; 791001; MIR30B.
XX
CC High-throughput sequencing suggests that the dominant miRNA arises from
CC the 3' arm of this precursor [2], in contrast to earlier cloning studies.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0003547"
FT /product="bta-miR-30b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3]"
FT miRNA 55..75
FT /accession="MIMAT0012534"
FT /product="bta-miR-30b-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 88 BP; 22 A; 20 C; 21 G; 0 T; 25 other;
ccaaguuuuc aguucaugua aacauccuac acucagcugu aacacacgag ucggcuggga 60
gguggauguu uacuucagcu gacuugga 88
//
ID bta-mir-31 standard; RNA; BTA; 94 BP.
XX
AC MI0004762;
XX
DE Bos taurus miR-31 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
DR ENTREZGENE; 791002; MIR31.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0003548"
FT /product="bta-miR-31"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 94 BP; 22 A; 23 C; 24 G; 0 T; 25 other;
uccuguaacu uggaacugga gaggaggcaa gaugcuggca uagcuguuga acugcgaacc 60
ugcuaugcca acauauugcc aucucucuug uccg 94
//
ID bta-mir-34b standard; RNA; BTA; 84 BP.
XX
AC MI0004763;
XX
DE Bos taurus miR-34b stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
DR ENTREZGENE; 791003; MIR34B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0003549"
FT /product="bta-miR-34b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 84 BP; 22 A; 20 C; 17 G; 0 T; 25 other;
gugcucgguu uguaggcagu guaauuagcu gauuguacuc ucaugcuuac aaucacuagu 60
uccacugcca ucaaaacaag gcac 84
//
ID dre-mir-499 standard; RNA; DRE; 91 BP.
XX
AC MI0004766;
XX
DE Danio rerio miR-499 stem-loop
XX
RN [1]
RX PUBMED; 16698962.
RA Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J,
RA Verheul M, Cuppen E, Plasterk RH;
RT "Cloning and expression of new microRNAs from zebrafish";
RL Nucleic Acids Res. 34:2558-2569(2006).
XX
DR ENTREZGENE; 100628940; mir499.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0003749"
FT /product="dre-miR-499-5p"
FT /evidence=experimental
FT /experiment="cloned [1], in-situ [1], Northern [1]"
FT miRNA 54..75
FT /accession="MIMAT0032009"
FT /product="dre-miR-499-3p"
FT /evidence=not_experimental
XX
SQ Sequence 91 BP; 24 A; 15 C; 25 G; 0 T; 27 other;
acugagaggg aggcaguuaa gacuugcagu gauguuuaga gaaaugucac augaacauca 60
cuuuaagucu gugcuggcuc cuguucugag u 91
//
ID dre-mir-725 standard; RNA; DRE; 80 BP.
XX
AC MI0004769;
XX
DE Danio rerio miR-725 stem-loop
XX
RN [1]
RX PUBMED; 16698962.
RA Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J,
RA Verheul M, Cuppen E, Plasterk RH;
RT "Cloning and expression of new microRNAs from zebrafish";
RL Nucleic Acids Res. 34:2558-2569(2006).
XX
DR ENTREZGENE; 100628844; mir725.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0032010"
FT /product="dre-miR-725-5p"
FT /evidence=not_experimental
FT miRNA 48..69
FT /accession="MIMAT0003753"
FT /product="dre-miR-725-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1]"
XX
SQ Sequence 80 BP; 18 A; 14 C; 26 G; 0 T; 22 other;
cugcagugca cauugcuagg aaugguggcu gagaugaaga gcaggauuuc agucauuguu 60
ucuaguagug cgcgcugcag 80
//
ID dre-mir-34c standard; RNA; DRE; 84 BP.
XX
AC MI0004774;
XX
DE Danio rerio miR-34c stem-loop
XX
RN [1]
RX PUBMED; 16698962.
RA Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J,
RA Verheul M, Cuppen E, Plasterk RH;
RT "Cloning and expression of new microRNAs from zebrafish";
RL Nucleic Acids Res. 34:2558-2569(2006).
XX
DR ENTREZGENE; 100628788; mir34c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0003759"
FT /product="dre-miR-34c-5p"
FT /evidence=experimental
FT /experiment="cloned [1], in-situ [1], Northern [1]"
FT miRNA 51..72
FT /accession="MIMAT0032011"
FT /product="dre-miR-34c-3p"
FT /evidence=not_experimental
XX
SQ Sequence 84 BP; 25 A; 18 C; 19 G; 0 T; 22 other;
ugcugugugg ucaccaggca gugcaguuag uugauuacaa uccauaaagu aaucacuaac 60
cucacuacca ggugaaggcu agua 84
//
ID dre-mir-730 standard; RNA; DRE; 84 BP.
XX
AC MI0004775;
XX
DE Danio rerio miR-730 stem-loop
XX
RN [1]
RX PUBMED; 16698962.
RA Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J,
RA Verheul M, Cuppen E, Plasterk RH;
RT "Cloning and expression of new microRNAs from zebrafish";
RL Nucleic Acids Res. 34:2558-2569(2006).
XX
DR ENTREZGENE; 100628845; mir730.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0003760"
FT /product="dre-miR-730"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1]"
XX
SQ Sequence 84 BP; 10 A; 23 C; 26 G; 0 T; 25 other;
ggguucuccg gucuccucau ugugcaugcu gugugucuuc agucuggucc ucacagcgcc 60
ugcaaugugg aggcuagggg acuc 84
//
ID dre-mir-731 standard; RNA; DRE; 90 BP.
XX
AC MI0004776;
XX
DE Danio rerio miR-731 stem-loop
XX
RN [1]
RX PUBMED; 16698962.
RA Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J,
RA Verheul M, Cuppen E, Plasterk RH;
RT "Cloning and expression of new microRNAs from zebrafish";
RL Nucleic Acids Res. 34:2558-2569(2006).
XX
DR ENTREZGENE; 100628789; mir731.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0003761"
FT /product="dre-miR-731"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1]"
XX
SQ Sequence 90 BP; 21 A; 23 C; 22 G; 0 T; 24 other;
ugaugcugau cuggaaugac acguuuucuc ccggaucgcc agaaauaugu uucgccaccg 60
ggaacuucgu gucagccaag auuggcauca 90
//
ID dre-mir-15c standard; RNA; DRE; 83 BP.
XX
AC MI0004779;
XX
DE Danio rerio miR-15c stem-loop
XX
RN [1]
RX PUBMED; 16698962.
RA Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J,
RA Verheul M, Cuppen E, Plasterk RH;
RT "Cloning and expression of new microRNAs from zebrafish";
RL Nucleic Acids Res. 34:2558-2569(2006).
XX
DR ENTREZGENE; 100628791; mir15c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0003764"
FT /product="dre-miR-15c"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1]"
XX
SQ Sequence 83 BP; 22 A; 18 C; 20 G; 0 T; 23 other;
ccuuagaccg cuaaagcagc gcgucauggu uuucaacauu agagaaggug caagccauca 60
uuugcugcuc uagaguuuua agg 83
//
ID dre-mir-737 standard; RNA; DRE; 96 BP.
XX
AC MI0004783;
XX
DE Danio rerio miR-737 stem-loop
XX
RN [1]
RX PUBMED; 16698962.
RA Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J,
RA Verheul M, Cuppen E, Plasterk RH;
RT "Cloning and expression of new microRNAs from zebrafish";
RL Nucleic Acids Res. 34:2558-2569(2006).
XX
DR ENTREZGENE; 100033750; mir737.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..40
FT /accession="MIMAT0032013"
FT /product="dre-miR-737-5p"
FT /evidence=not_experimental
FT miRNA 60..80
FT /accession="MIMAT0003768"
FT /product="dre-miR-737-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1]"
XX
SQ Sequence 96 BP; 29 A; 13 C; 22 G; 0 T; 32 other;
ccacagcugc ugugcuguug uuuuuuuagg uuuugauuuu ugugaaaugu cgaugagaaa 60
aucaaaaccu aaagaaaaua cugcgcagau agaugg 96
//
ID mmu-mir-652 standard; RNA; MMU; 98 BP.
XX
AC MI0004965;
XX
DE Mus musculus miR-652 stem-loop
XX
RN [1]
RX PUBMED; 16566924.
RA Wheeler G, Ntounia-Fousara S, Granda B, Rathjen T, Dalmay T;
RT "Identification of new central nervous system specific mouse microRNAs";
RL FEBS Lett. 580:2195-2200(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3624350; Mir652.
DR ENTREZGENE; 723976; Mir652.
XX
CC The predominant miRNA cloned by Langraf et al. has a 3' terminal U
CC residue, which is incompatible with the genome sequence [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..44
FT /accession="MIMAT0017260"
FT /product="mmu-miR-652-5p"
FT /evidence=experimental
FT /experiment="454 [4], Illumina [5]"
FT miRNA 61..81
FT /accession="MIMAT0003711"
FT /product="mmu-miR-652-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3,5]"
FT /similarity="MI0003667"
XX
SQ Sequence 98 BP; 28 A; 22 C; 27 G; 0 T; 21 other;
aggaacagcu auguacugca caacccuagg agggggugcc auucacauag aguauaauug 60
aauggcgcca cuaggguugu gcaguguaca gccuacac 98
//
ID bmo-let-7 standard; RNA; BMO; 104 BP.
XX
AC MI0004968;
XX
DE Bombyx mori let-7 stem-loop
XX
RN [1]
RX PUBMED; 16972323.
RA Tong CZ, Jin YF, Zhang YZ;
RT "Computational prediction of microRNA genes in silkworm genome";
RL J Zhejiang Univ Sci B. 7:806-816(2006).
XX
RN [2]
RX PUBMED; 17651473.
RA Liu S, Xia Q, Zhao P, Cheng T, Hong K, Xiang Z;
RT "Characterization and expression patterns of let-7 microRNA in the
RT silkworm (Bombyx mori)";
RL BMC Dev Biol. 7:88(2007).
XX
RN [3]
RX PUBMED; 18507836.
RA He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X,
RA Jin Y, Zhang Y;
RT "Identification and characteristics of microRNAs from Bombyx mori";
RL BMC Genomics. 9:248(2008).
XX
RN [4]
RX PUBMED; 18977439.
RA Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y;
RT "Identification of conserved microRNAs in Bombyx mori (silkworm) and
RT regulation of fibroin L chain production by microRNAs in heterologous
RT system";
RL Insect Biochem Mol Biol. 38:1066-1071(2008).
XX
RN [5]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..40
FT /accession="MIMAT0004190"
FT /product="bmo-let-7-5p"
FT /evidence=experimental
FT /experiment="Northern [1-3], RT-PCR [4], Illumina [5]"
FT /similarity="MI0000001"
FT miRNA 66..87
FT /accession="MIMAT0015221"
FT /product="bmo-let-7-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 104 BP; 27 A; 20 C; 30 G; 0 T; 27 other;
gguacugccg ucggcuuguu gagguaguag guuguauagu acggaaauac aacacauagg 60
ugcgacugua uagccugcua acuuuccgag cugacggaau gaca 104
//
ID bmo-mir-8 standard; RNA; BMO; 102 BP.
XX
AC MI0004971;
XX
DE Bombyx mori miR-8 stem-loop
XX
RN [1]
RX PUBMED; 16972323.
RA Tong CZ, Jin YF, Zhang YZ;
RT "Computational prediction of microRNA genes in silkworm genome";
RL J Zhejiang Univ Sci B. 7:806-816(2006).
XX
RN [2]
RX PUBMED; 18507836.
RA He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X,
RA Jin Y, Zhang Y;
RT "Identification and characteristics of microRNAs from Bombyx mori";
RL BMC Genomics. 9:248(2008).
XX
RN [3]
RX PUBMED; 18714353.
RA Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J;
RT "The silkworm (Bombyx mori) microRNAs and their expressions in multiple
RT developmental stages";
RL PLoS One. 3:e2997(2008).
XX
RN [4]
RX PUBMED; 18977439.
RA Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y;
RT "Identification of conserved microRNAs in Bombyx mori (silkworm) and
RT regulation of fibroin L chain production by microRNAs in heterologous
RT system";
RL Insect Biochem Mol Biol. 38:1066-1071(2008).
XX
RN [5]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0015224"
FT /product="bmo-miR-8-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 60..82
FT /accession="MIMAT0004193"
FT /product="bmo-miR-8-3p"
FT /evidence=experimental
FT /experiment="Northern [2], cloned [3], RT-PCR [4],
FT Illumina [5]"
FT /similarity="MI0000128"
XX
SQ Sequence 102 BP; 22 A; 27 C; 24 G; 0 T; 29 other;
cacgacggag uaacgguucg caucuuaccg ggcagcauua gaguccuguc uauauuuucu 60
aauacuguca gguaaagaug ucguccgcgc uccacguucg uc 102
//
ID bmo-mir-9a standard; RNA; BMO; 90 BP.
XX
AC MI0004972;
XX
DE Bombyx mori miR-9a stem-loop
XX
RN [1]
RX PUBMED; 16972323.
RA Tong CZ, Jin YF, Zhang YZ;
RT "Computational prediction of microRNA genes in silkworm genome";
RL J Zhejiang Univ Sci B. 7:806-816(2006).
XX
RN [2]
RX PUBMED; 18507836.
RA He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X,
RA Jin Y, Zhang Y;
RT "Identification and characteristics of microRNAs from Bombyx mori";
RL BMC Genomics. 9:248(2008).
XX
RN [3]
RX PUBMED; 18714353.
RA Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J;
RT "The silkworm (Bombyx mori) microRNAs and their expressions in multiple
RT developmental stages";
RL PLoS One. 3:e2997(2008).
XX
RN [4]
RX PUBMED; 18977439.
RA Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y;
RT "Identification of conserved microRNAs in Bombyx mori (silkworm) and
RT regulation of fibroin L chain production by microRNAs in heterologous
RT system";
RL Insect Biochem Mol Biol. 38:1066-1071(2008).
XX
RN [5]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..40
FT /accession="MIMAT0004194"
FT /product="bmo-miR-9a-5p"
FT /evidence=experimental
FT /experiment="Northern [2], cloned [3], RT-PCR [4],
FT Illumina [5]"
FT /similarity="MI0000129"
FT miRNA 55..77
FT /accession="MIMAT0015225"
FT /product="bmo-miR-9a-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 90 BP; 24 A; 13 C; 21 G; 0 T; 32 other;
aguagauugg uuaauuaucu uugguuaucu agcuguauga guauuacuga cgucauaaag 60
cuagguuacc ggaguuaagu gccgucuaca 90
//
ID bmo-mir-10 standard; RNA; BMO; 84 BP.
XX
AC MI0004973;
XX
DE Bombyx mori miR-10 stem-loop
XX
RN [1]
RX PUBMED; 16972323.
RA Tong CZ, Jin YF, Zhang YZ;
RT "Computational prediction of microRNA genes in silkworm genome";
RL J Zhejiang Univ Sci B. 7:806-816(2006).
XX
RN [2]
RX PUBMED; 18507836.
RA He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X,
RA Jin Y, Zhang Y;
RT "Identification and characteristics of microRNAs from Bombyx mori";
RL BMC Genomics. 9:248(2008).
XX
RN [3]
RX PUBMED; 18714353.
RA Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J;
RT "The silkworm (Bombyx mori) microRNAs and their expressions in multiple
RT developmental stages";
RL PLoS One. 3:e2997(2008).
XX
RN [4]
RX PUBMED; 18977439.
RA Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y;
RT "Identification of conserved microRNAs in Bombyx mori (silkworm) and
RT regulation of fibroin L chain production by microRNAs in heterologous
RT system";
RL Insect Biochem Mol Biol. 38:1066-1071(2008).
XX
RN [5]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
CC Tong et al erroneously published the reverse complement of the sequence
CC shown here [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0004195"
FT /product="bmo-miR-10-5p"
FT /evidence=experimental
FT /experiment="cloned [3], RT-PCR [4], Illumina [5]"
FT /similarity="MI0000130"
FT miRNA 50..72
FT /accession="MIMAT0015226"
FT /product="bmo-miR-10-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 84 BP; 19 A; 16 C; 24 G; 0 T; 25 other;
agugcccuac aucuacccug uagauccgaa uuuguuugaa gugaggcgac aaauucgguu 60
cuagagaggu uuguguggug cacg 84
//
ID bmo-mir-14 standard; RNA; BMO; 80 BP.
XX
AC MI0004974;
XX
DE Bombyx mori miR-14 stem-loop
XX
RN [1]
RX PUBMED; 16972323.
RA Tong CZ, Jin YF, Zhang YZ;
RT "Computational prediction of microRNA genes in silkworm genome";
RL J Zhejiang Univ Sci B. 7:806-816(2006).
XX
RN [2]
RX PUBMED; 18507836.
RA He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X,
RA Jin Y, Zhang Y;
RT "Identification and characteristics of microRNAs from Bombyx mori";
RL BMC Genomics. 9:248(2008).
XX
RN [3]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0015227"
FT /product="bmo-miR-14-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 48..68
FT /accession="MIMAT0004196"
FT /product="bmo-miR-14-3p"
FT /evidence=experimental
FT /experiment="Northern [2], Illumina [3]"
FT /similarity="MI0000136"
XX
SQ Sequence 80 BP; 16 A; 13 C; 19 G; 0 T; 32 other;
uugucauuug ugucggggag agaaaucgac gaggcuguuu uauuuaguca gucuuuuucu 60
cucuccuaua ugagugacau 80
//
ID bmo-mir-34 standard; RNA; BMO; 98 BP.
XX
AC MI0004975;
XX
DE Bombyx mori miR-34 stem-loop
XX
RN [1]
RX PUBMED; 16972323.
RA Tong CZ, Jin YF, Zhang YZ;
RT "Computational prediction of microRNA genes in silkworm genome";
RL J Zhejiang Univ Sci B. 7:806-816(2006).
XX
RN [2]
RX PUBMED; 18507836.
RA He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X,
RA Jin Y, Zhang Y;
RT "Identification and characteristics of microRNAs from Bombyx mori";
RL BMC Genomics. 9:248(2008).
XX
RN [3]
RX PUBMED; 18977439.
RA Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y;
RT "Identification of conserved microRNAs in Bombyx mori (silkworm) and
RT regulation of fibroin L chain production by microRNAs in heterologous
RT system";
RL Insect Biochem Mol Biol. 38:1066-1071(2008).
XX
RN [4]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0004197"
FT /product="bmo-miR-34-5p"
FT /evidence=experimental
FT /experiment="RT-PCR [3], Illumina [4]"
FT /similarity="MI0000371"
FT miRNA 60..81
FT /accession="MIMAT0015228"
FT /product="bmo-miR-34-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 98 BP; 26 A; 23 C; 27 G; 0 T; 22 other;
agaaucaggg uagaccgcgu uggcagugug guuagcuggu uguguaugga aaugacaaca 60
gccacuaacg acacugcucc ugcgugcacc cuaaauca 98
//
ID bmo-mir-263a standard; RNA; BMO; 95 BP.
XX
AC MI0004978;
XX
DE Bombyx mori miR-263a stem-loop
XX
RN [1]
RX PUBMED; 16972323.
RA Tong CZ, Jin YF, Zhang YZ;
RT "Computational prediction of microRNA genes in silkworm genome";
RL J Zhejiang Univ Sci B. 7:806-816(2006).
XX
RN [2]
RX PUBMED; 18507836.
RA He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X,
RA Jin Y, Zhang Y;
RT "Identification and characteristics of microRNAs from Bombyx mori";
RL BMC Genomics. 9:248(2008).
XX
RN [3]
RX PUBMED; 18714353.
RA Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J;
RT "The silkworm (Bombyx mori) microRNAs and their expressions in multiple
RT developmental stages";
RL PLoS One. 3:e2997(2008).
XX
RN [4]
RX PUBMED; 18977439.
RA Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y;
RT "Identification of conserved microRNAs in Bombyx mori (silkworm) and
RT regulation of fibroin L chain production by microRNAs in heterologous
RT system";
RL Insect Biochem Mol Biol. 38:1066-1071(2008).
XX
RN [5]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0004200"
FT /product="bmo-miR-263a-5p"
FT /evidence=experimental
FT /experiment="Northern [2], cloned [3], RT-PCR [4],
FT Illumina [5]"
FT /similarity="MI0000343"
FT miRNA 60..81
FT /accession="MIMAT0015230"
FT /product="bmo-miR-263a-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 95 BP; 25 A; 22 C; 24 G; 0 T; 24 other;
aucgauccaa gcacaggcaa uggcacugga agaauucacg gguucaguuu auauauuccc 60
gugaucucuu aguggcauca cuggugcagg acgac 95
//
ID bmo-mir-276 standard; RNA; BMO; 84 BP.
XX
AC MI0004980;
XX
DE Bombyx mori miR-276 stem-loop
XX
RN [1]
RX PUBMED; 16972323.
RA Tong CZ, Jin YF, Zhang YZ;
RT "Computational prediction of microRNA genes in silkworm genome";
RL J Zhejiang Univ Sci B. 7:806-816(2006).
XX
RN [2]
RX PUBMED; 18507836.
RA He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X,
RA Jin Y, Zhang Y;
RT "Identification and characteristics of microRNAs from Bombyx mori";
RL BMC Genomics. 9:248(2008).
XX
RN [3]
RX PUBMED; 18977439.
RA Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y;
RT "Identification of conserved microRNAs in Bombyx mori (silkworm) and
RT regulation of fibroin L chain production by microRNAs in heterologous
RT system";
RL Insect Biochem Mol Biol. 38:1066-1071(2008).
XX
RN [4]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0004202"
FT /product="bmo-miR-276-5p"
FT /evidence=experimental
FT /experiment="Northern [2], RT-PCR [3], Illumina [4]"
FT /similarity="MI0000359"
FT miRNA 51..72
FT /accession="MIMAT0015232"
FT /product="bmo-miR-276-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 84 BP; 21 A; 19 C; 19 G; 0 T; 25 other;
cugguaauua ccacuagcga gguauagagu uccuacguau gcuaacacug uaggaacuuc 60
auaccgugcu cuuggguuug ccaa 84
//
ID bmo-mir-277 standard; RNA; BMO; 122 BP.
XX
AC MI0004981;
XX
DE Bombyx mori miR-277 stem-loop
XX
RN [1]
RX PUBMED; 16972323.
RA Tong CZ, Jin YF, Zhang YZ;
RT "Computational prediction of microRNA genes in silkworm genome";
RL J Zhejiang Univ Sci B. 7:806-816(2006).
XX
RN [2]
RX PUBMED; 18507836.
RA He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X,
RA Jin Y, Zhang Y;
RT "Identification and characteristics of microRNAs from Bombyx mori";
RL BMC Genomics. 9:248(2008).
XX
RN [3]
RX PUBMED; 18977439.
RA Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y;
RT "Identification of conserved microRNAs in Bombyx mori (silkworm) and
RT regulation of fibroin L chain production by microRNAs in heterologous
RT system";
RL Insect Biochem Mol Biol. 38:1066-1071(2008).
XX
RN [4]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0015233"
FT /product="bmo-miR-277-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 81..103
FT /accession="MIMAT0004203"
FT /product="bmo-miR-277-3p"
FT /evidence=experimental
FT /experiment="Northern [2], RT-PCR [3], Illumina [4]"
FT /similarity="MI0000360"
XX
SQ Sequence 122 BP; 27 A; 27 C; 35 G; 0 T; 33 other;
uugauuacgc cucgggguuc gugccaggag ugcguuugca aagaggccga cauguuugcg 60
uuauugcaau guuaacacug uaaaugcacu aucugguacg acaucccggg gcguguagca 120
ac 122
//
ID bmo-mir-282 standard; RNA; BMO; 85 BP.
XX
AC MI0004983;
XX
DE Bombyx mori miR-282 stem-loop
XX
RN [1]
RX PUBMED; 16972323.
RA Tong CZ, Jin YF, Zhang YZ;
RT "Computational prediction of microRNA genes in silkworm genome";
RL J Zhejiang Univ Sci B. 7:806-816(2006).
XX
RN [2]
RX PUBMED; 18507836.
RA He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X,
RA Jin Y, Zhang Y;
RT "Identification and characteristics of microRNAs from Bombyx mori";
RL BMC Genomics. 9:248(2008).
XX
RN [3]
RX PUBMED; 18714353.
RA Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J;
RT "The silkworm (Bombyx mori) microRNAs and their expressions in multiple
RT developmental stages";
RL PLoS One. 3:e2997(2008).
XX
RN [4]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..37
FT /accession="MIMAT0004205"
FT /product="bmo-miR-282-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4]"
FT /similarity="MI0000367"
FT miRNA 54..75
FT /accession="MIMAT0015234"
FT /product="bmo-miR-282-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 85 BP; 13 A; 21 C; 20 G; 0 T; 31 other;
cgggacuuug accuagccuc uccuuggcuu ugucuguuuc guuaguagcu cagacauagc 60
cugauagagg uuacguuuug ucccu 85
//
ID bmo-mir-283 standard; RNA; BMO; 83 BP.
XX
AC MI0004984;
XX
DE Bombyx mori miR-283 stem-loop
XX
RN [1]
RX PUBMED; 16972323.
RA Tong CZ, Jin YF, Zhang YZ;
RT "Computational prediction of microRNA genes in silkworm genome";
RL J Zhejiang Univ Sci B. 7:806-816(2006).
XX
RN [2]
RX PUBMED; 18507836.
RA He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X,
RA Jin Y, Zhang Y;
RT "Identification and characteristics of microRNAs from Bombyx mori";
RL BMC Genomics. 9:248(2008).
XX
RN [3]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0004206"
FT /product="bmo-miR-283-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT /similarity="MI0000368"
FT miRNA 50..71
FT /accession="MIMAT0015235"
FT /product="bmo-miR-283-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 83 BP; 23 A; 17 C; 16 G; 0 T; 27 other;
aacguuuccc gacuaaauau cagcugguaa uucugggcuu uauuaauccc aggcuaucag 60
cugguauaca guuaugauac gua 83
//
ID bmo-mir-305 standard; RNA; BMO; 91 BP.
XX
AC MI0004985;
XX
DE Bombyx mori miR-305 stem-loop
XX
RN [1]
RX PUBMED; 16972323.
RA Tong CZ, Jin YF, Zhang YZ;
RT "Computational prediction of microRNA genes in silkworm genome";
RL J Zhejiang Univ Sci B. 7:806-816(2006).
XX
RN [2]
RX PUBMED; 18507836.
RA He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X,
RA Jin Y, Zhang Y;
RT "Identification and characteristics of microRNAs from Bombyx mori";
RL BMC Genomics. 9:248(2008).
XX
RN [3]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0004207"
FT /product="bmo-miR-305-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT /similarity="MI0000412"
FT miRNA 55..75
FT /accession="MIMAT0015236"
FT /product="bmo-miR-305-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 91 BP; 15 A; 26 C; 25 G; 0 T; 25 other;
cgaccgccgc acgcccauug uacuucauca ggugcucugg ugaucauagu uccaggcgcu 60
uguuggagua cacuuaccgu gucggcgguu a 91
//
ID gga-mir-21 standard; RNA; GGA; 97 BP.
XX
AC MI0004994;
XX
DE Gallus gallus miR-21 stem-loop
XX
RN [1]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777914; MIR21.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0003774"
FT /product="gga-miR-21-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3]"
FT miRNA 56..77
FT /accession="MIMAT0026643"
FT /product="gga-miR-21-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 97 BP; 21 A; 21 C; 23 G; 0 T; 32 other;
uguaccaucc ugucggauag cuuaucagac ugauguugac uguuggaucu cauggcaaca 60
acagucggua ggcugucuga cauuuuggua ucucuca 97
//
ID gga-mir-144 standard; RNA; GGA; 85 BP.
XX
AC MI0004996;
XX
DE Gallus gallus miR-144 stem-loop
XX
RN [1]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777916; MIR144.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0026644"
FT /product="gga-miR-144-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 53..74
FT /accession="MIMAT0003776"
FT /product="gga-miR-144-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], Illumina [2]"
XX
SQ Sequence 85 BP; 20 A; 24 C; 19 G; 0 T; 22 other;
cccgccgccc ugggcuggau aucaucauau acuguaaguu cacuaugaga cacuacagua 60
uagaugaugu acuccccugg gcugc 85
//
ID gga-mir-460a standard; RNA; GGA; 90 BP.
XX
AC MI0004998;
XX
DE Gallus gallus miR-460a stem-loop
XX
RN [1]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777918; MIR460A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0003778"
FT /product="gga-miR-460a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
FT miRNA 52..73
FT /accession="MIMAT0026646"
FT /product="gga-miR-460a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 90 BP; 26 A; 20 C; 19 G; 0 T; 25 other;
cugacuauau agcaccugca uuguacacac uguguguguu aacuggaaau gcacagcgca 60
uacaaugugg auucuguaga agucacucac 90
//
ID mmu-mir-490 standard; RNA; MMU; 84 BP.
XX
AC MI0005002;
XX
DE Mus musculus miR-490 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629662; Mir490.
DR ENTREZGENE; 735279; Mir490.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..41
FT /accession="MIMAT0017261"
FT /product="mmu-miR-490-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 59..80
FT /accession="MIMAT0003780"
FT /product="mmu-miR-490-3p"
FT /evidence=experimental
FT /experiment="MPSS [1], Illumina [2-3]"
XX
SQ Sequence 84 BP; 21 A; 19 C; 21 G; 0 T; 23 other;
uggaaaguuc auuguucgac accauggauc uccagguggg ucacguuuag auauacacca 60
accuggagga cuccaugcug uuga 84
//
ID mmu-mir-676 standard; RNA; MMU; 89 BP.
XX
AC MI0005003;
XX
DE Mus musculus miR-676 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629957; Mir676.
DR ENTREZGENE; 751534; Mir676.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0003781"
FT /product="mmu-miR-676-5p"
FT /evidence=experimental
FT /experiment="MPSS [1], Illumina [3-4]"
FT miRNA 55..75
FT /accession="MIMAT0003782"
FT /product="mmu-miR-676-3p"
FT /evidence=experimental
FT /experiment="MPSS [1], cloned [2], Illumina [3-4]"
XX
SQ Sequence 89 BP; 19 A; 19 C; 24 G; 0 T; 27 other;
cuuugccuga augcaugacu cuacaaccuu aggacuugca gaauuaaagg aaugccgucc 60
ugagguuguu gagcugugcg uuucugggc 89
//
ID mmu-mir-615 standard; RNA; MMU; 92 BP.
XX
AC MI0005004;
XX
DE Mus musculus miR-615 stem-loop
XX
RN [1]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629927; Mir615.
DR ENTREZGENE; 751557; Mir615.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0004837"
FT /product="mmu-miR-615-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 60..81
FT /accession="MIMAT0003783"
FT /product="mmu-miR-615-3p"
FT /evidence=experimental
FT /experiment="MPSS [1], cloned [2], Illumina [3-4]"
XX
SQ Sequence 92 BP; 7 A; 30 C; 34 G; 0 T; 21 other;
ucgggagggg cgggaggggg guccccggug cucggaucuc gagggugcuu auuguucggu 60
ccgagccugg gucucccucu uccccccauc cc 92
//
ID bta-mir-107 standard; RNA; BTA; 81 BP.
XX
AC MI0005006;
XX
DE Bos taurus miR-107 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
DR ENTREZGENE; 791005; MIR107.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..71
FT /accession="MIMAT0003785"
FT /product="bta-miR-107"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 81 BP; 18 A; 19 C; 19 G; 0 T; 25 other;
cucucugcuu ucagcuucuu uacaguguug ccuuguggca uggaguucaa gcagcauugu 60
acagggcuau caaagcacag a 81
//
ID bta-mir-10a standard; RNA; BTA; 109 BP.
XX
AC MI0005007;
XX
DE Bos taurus miR-10a stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
DR ENTREZGENE; 791006; MIR10A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0003786"
FT /product="bta-miR-10a"
FT /evidence=experimental
FT /experiment="cloned [1], Array [2], qRT-PCR [2]"
XX
SQ Sequence 109 BP; 29 A; 20 C; 22 G; 0 T; 38 other;
gaucugucug ucuucuguau auacccugua gauccgaauu uguguaagga auuuugugau 60
cacaaauucg uaucuagggg aauauguagu ugacauaaac acuccgcuc 109
//
ID bta-mir-127 standard; RNA; BTA; 95 BP.
XX
AC MI0005008;
XX
DE Bos taurus miR-127 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
DR ENTREZGENE; 791007; MIR127.
XX
FH Key Location/Qualifiers
FH
FT miRNA 55..76
FT /accession="MIMAT0003787"
FT /product="bta-miR-127"
FT /evidence=experimental
FT /experiment="cloned [1], Array [2], qRT-PCR [2]"
XX
SQ Sequence 95 BP; 19 A; 26 C; 25 G; 0 T; 25 other;
ugaucacugu cuccagccug cugaagcuca gagggcucug auucagaaag aucaucggau 60
ccgucugagc uuggcugguc ggaagucucc ucauc 95
//
ID bta-mir-139 standard; RNA; BTA; 68 BP.
XX
AC MI0005009;
XX
DE Bos taurus miR-139 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
DR ENTREZGENE; 791008; MIR139.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0003788"
FT /product="bta-miR-139"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 68 BP; 11 A; 17 C; 24 G; 0 T; 16 other;
guguacucua cagugcacgu gucuccagug uggcucggag gcuggagacg cggcccuguu 60
ggaguaac 68
//
ID bta-mir-140 standard; RNA; BTA; 94 BP.
XX
AC MI0005010;
XX
DE Bos taurus miR-140 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
RN [3]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
DR ENTREZGENE; 791009; MIR140.
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..77
FT /accession="MIMAT0003789"
FT /product="bta-miR-140"
FT /evidence=experimental
FT /experiment="cloned [1-2], Array [3], qRT-PCR [3]"
XX
SQ Sequence 94 BP; 18 A; 26 C; 25 G; 0 T; 25 other;
ucucucugug uccugccagu gguuuuaccc uaugguaggu uacgucaugc uguucuacca 60
caggguagaa ccacggacag gauaccgggg cacc 94
//
ID bta-mir-15b standard; RNA; BTA; 98 BP.
XX
AC MI0005012;
XX
DE Bos taurus miR-15b stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
DR ENTREZGENE; 791011; MIR15B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0003792"
FT /product="bta-miR-15b"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 98 BP; 33 A; 17 C; 17 G; 0 T; 31 other;
uugagaccuu aaaguacugu agcagcacau caugguuuac auacuacagu caagaugcga 60
aucauuauuu gcugcucuag aaauuuaagg aaauucau 98
//
ID bta-mir-193a standard; RNA; BTA; 81 BP.
XX
AC MI0005014;
XX
DE Bos taurus miR-193a stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 19633723.
RA Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ;
RT "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed
RT upon viral infection";
RL PLoS One. 4:e6349(2009).
XX
DR ENTREZGENE; 791013; MIR193A.
XX
CC High-throughput sequencing suggests that the dominant miRNA arises from
CC the 5' arm of this precursor [2], in contrast to earlier cloning studies.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0003794"
FT /product="bta-miR-193a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
FT miRNA 49..70
FT /accession="MIMAT0003795"
FT /product="bta-miR-193a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
XX
SQ Sequence 81 BP; 14 A; 22 C; 28 G; 0 T; 17 other;
ugggagcuga gagcuggguc uuugcgggcg agaugaaggu gucgguucaa cuggccuaca 60
aagucccagu ccucggcccc c 81
//
ID bta-mir-215 standard; RNA; BTA; 79 BP.
XX
AC MI0005016;
XX
DE Bos taurus miR-215 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
DR ENTREZGENE; 791015; MIR215.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0003797"
FT /product="bta-miR-215"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 79 BP; 23 A; 14 C; 17 G; 0 T; 25 other;
uguacaggaa aaugaccuau gaauugacag acaacgugac uaagucuguc ugucauuucu 60
guaggccaau guucuguau 79
//
ID bta-mir-30e standard; RNA; BTA; 92 BP.
XX
AC MI0005018;
XX
DE Bos taurus miR-30e stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
DR ENTREZGENE; 791017; MIR30E.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..40
FT /accession="MIMAT0003799"
FT /product="bta-miR-30e-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 92 BP; 20 A; 20 C; 28 G; 0 T; 24 other;
gggcagucuu ugcuacugua aacauccuug acuggaagcu guaaggcguu gcaaggagcu 60
uucagucgga uguuuacagc ggcaggcugc ca 92
//
ID bta-mir-345 standard; RNA; BTA; 91 BP.
XX
AC MI0005019;
XX
DE Bos taurus miR-345 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 19633723.
RA Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ;
RT "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed
RT upon viral infection";
RL PLoS One. 4:e6349(2009).
XX
DR ENTREZGENE; 791018; MIR345.
XX
CC High-throughput sequencing suggests that the dominant miRNA arises from
CC the 3' arm of this precursor [2], in contrast to earlier cloning studies.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0003800"
FT /product="bta-miR-345-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
FT miRNA 55..74
FT /accession="MIMAT0012535"
FT /product="bta-miR-345-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 91 BP; 16 A; 23 C; 29 G; 0 T; 23 other;
acccaaaccc aggucugcug acuccuaguc cagugcuugu gauggcuggu gggcccugaa 60
cuaggggucu ggaggccugg guuugaauau c 91
//
ID bta-mir-369 standard; RNA; BTA; 69 BP.
XX
AC MI0005020;
XX
DE Bos taurus miR-369 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
DR ENTREZGENE; 791019; MIR369.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..29
FT /accession="MIMAT0003801"
FT /product="bta-miR-369-5p"
FT /evidence=not_experimental
FT /similarity="MI0000777"
FT miRNA 43..63
FT /accession="MIMAT0003802"
FT /product="bta-miR-369-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 69 BP; 17 A; 11 C; 15 G; 0 T; 26 other;
ugaagggaga ucgaccgugu uauauucgcu uuauugacuu cgaauaauac augguugauc 60
uuuucucag 69
//
ID bta-mir-487a standard; RNA; BTA; 80 BP.
XX
AC MI0005022;
XX
DE Bos taurus miR-487a stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
DR ENTREZGENE; 791021; MIR487A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..69
FT /accession="MIMAT0003805"
FT /product="bta-miR-487a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 80 BP; 18 A; 15 C; 19 G; 0 T; 28 other;
gguacuugaa gagugguuau cccugcugug uucgcuguau uuaugacgaa ucauacaggg 60
acauccaguu uuucaguauc 80
//
ID bta-mir-545 standard; RNA; BTA; 106 BP.
XX
AC MI0005023;
XX
DE Bos taurus miR-545 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
DR ENTREZGENE; 791022; MIR545.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0003806"
FT /product="bta-miR-545-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 62..83
FT /accession="MIMAT0003807"
FT /product="bta-miR-545-3p"
FT /evidence=experimental
FT /experiment="Array [2], qRT-PCR [2]"
FT /similarity="MI0003516"
XX
SQ Sequence 106 BP; 30 A; 24 C; 22 G; 0 T; 30 other;
cccagccugg cacauucgua ggccucagua aauguuuauu ggaugaauaa augaauggcu 60
caucaacaaa cauuuauugu gugccugcua acgugaucuc cacagg 106
//
ID bta-mir-98 standard; RNA; BTA; 119 BP.
XX
AC MI0005025;
XX
DE Bos taurus miR-98 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
DR ENTREZGENE; 791024; MIR98.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0003809"
FT /product="bta-miR-98"
FT /evidence=experimental
FT /experiment="cloned [1], Array [2], qRT-PCR [2]"
XX
SQ Sequence 119 BP; 28 A; 20 C; 32 G; 0 T; 39 other;
aggacucugc ucaugcuggg gugagguagu aaguuguauu guuguggggu agggauuuua 60
ggccccaauu ugaagauaac uauacaacuu acuacuuucc cuggugugua gcacauuca 119
//
ID bta-let-7d standard; RNA; BTA; 87 BP.
XX
AC MI0005026;
XX
DE Bos taurus let-7d stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
DR ENTREZGENE; 791025; MIRLET7D.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0003810"
FT /product="bta-let-7d"
FT /evidence=experimental
FT /experiment="cloned [1], Array [2], qRT-PCR [2]"
XX
SQ Sequence 87 BP; 20 A; 17 C; 26 G; 0 T; 24 other;
ccuaggaaga gguaguaggu ugcauaguuu ucgggcaggg auuuugccca caaggaggua 60
acuauacgac cugcugccuu ucuuagg 87
//
ID bta-mir-132 standard; RNA; BTA; 101 BP.
XX
AC MI0005028;
XX
DE Bos taurus miR-132 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
DR ENTREZGENE; 791027; MIR132.
XX
FH Key Location/Qualifiers
FH
FT miRNA 59..80
FT /accession="MIMAT0003812"
FT /product="bta-miR-132"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 101 BP; 17 A; 38 C; 29 G; 0 T; 17 other;
ccgcccccgc gucuccaggg caaccguggc uuucgauugu uacuguggga accggaggua 60
acagucuaca gccauggucg ccccgcagca cgcccacgcg c 101
//
ID bta-mir-138-2 standard; RNA; BTA; 83 BP.
XX
AC MI0005029;
XX
DE Bos taurus miR-138-2 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
DR ENTREZGENE; 791028; MIR138-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0003813"
FT /product="bta-miR-138"
FT /evidence=experimental
FT /experiment="cloned [1], Array [2], qRT-PCR [2]"
XX
SQ Sequence 83 BP; 16 A; 24 C; 23 G; 0 T; 20 other;
guugcugcag cugguguugu gaaucaggcc gacgagcagc gcauccucuu acccggcuau 60
uucacgacac caggguugca uca 83
//
ID bta-mir-148b standard; RNA; BTA; 90 BP.
XX
AC MI0005030;
XX
DE Bos taurus miR-148b stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
DR ENTREZGENE; 791029; MIR148B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..75
FT /accession="MIMAT0003814"
FT /product="bta-miR-148b"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 90 BP; 22 A; 18 C; 20 G; 0 T; 30 other;
uuagcauuug aggugaaguu cuguuauaca cucaggcugu ggcucucuga aagucagugc 60
aucacagaac uuugucucga aagcuuucua 90
//
ID bta-mir-17 standard; RNA; BTA; 84 BP.
XX
AC MI0005031;
XX
DE Bos taurus miR-17 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
DR ENTREZGENE; 791030; MIR17.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..37
FT /accession="MIMAT0003815"
FT /product="bta-miR-17-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT miRNA 51..70
FT /accession="MIMAT0003816"
FT /product="bta-miR-17-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 84 BP; 24 A; 13 C; 23 G; 0 T; 24 other;
gucagaauaa ugucaaagug cuuacagugc agguagugau augugcaucu acugcaguga 60
aggcacuugu agcauuaugg ugac 84
//
ID bta-mir-181c standard; RNA; BTA; 97 BP.
XX
AC MI0005032;
XX
DE Bos taurus miR-181c stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
DR ENTREZGENE; 791031; MIR181C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..42
FT /accession="MIMAT0003817"
FT /product="bta-miR-181c"
FT /evidence=experimental
FT /experiment="cloned [1], Array [2], qRT-PCR [2]"
XX
SQ Sequence 97 BP; 20 A; 25 C; 32 G; 0 T; 20 other;
uugccaaggg uuugggggaa cauucaaccu gucggugagu uugggcagcu caggcaaacc 60
aucgaccguu gaguggaccc cgaggccugg aacugcc 97
//
ID bta-mir-186 standard; RNA; BTA; 86 BP.
XX
AC MI0005033;
XX
DE Bos taurus miR-186 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 19267191.
RA Long JE, Chen HX;
RT "Identification and characteristics of cattle microRNAs by homology
RT searching and small RNA cloning";
RL Biochem Genet. 47:329-343(2009).
XX
DR ENTREZGENE; 791032; MIR186.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0003818"
FT /product="bta-miR-186"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 86 BP; 20 A; 13 C; 16 G; 0 T; 37 other;
ugcuuauaac uuuccaaaga auucuccuuu ugggcuuucu gauuuuauuu uaagcccaaa 60
ggugaauuuu uugggaaguu ugagcu 86
//
ID bta-mir-191 standard; RNA; BTA; 91 BP.
XX
AC MI0005034;
XX
DE Bos taurus miR-191 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
DR ENTREZGENE; 791033; MIR191.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0003819"
FT /product="bta-miR-191"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 91 BP; 16 A; 29 C; 24 G; 0 T; 22 other;
ggcuggacag cgggcaacgg aaucccaaaa gcagcuguug ucuccagagc auuccagcug 60
cgcuuggauu ucguucccug cucuccugcc u 91
//
ID bta-mir-192 standard; RNA; BTA; 106 BP.
XX
AC MI0005035;
XX
DE Bos taurus miR-192 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
RN [3]
RX PUBMED; 19267191.
RA Long JE, Chen HX;
RT "Identification and characteristics of cattle microRNAs by homology
RT searching and small RNA cloning";
RL Biochem Genet. 47:329-343(2009).
XX
DR ENTREZGENE; 791034; MIR192.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0003820"
FT /product="bta-miR-192"
FT /evidence=experimental
FT /experiment="cloned [1,3], Array [2], qRT-PCR [2]"
XX
SQ Sequence 106 BP; 22 A; 32 C; 26 G; 0 T; 26 other;
agaccgagug cacagggcuc ugaccuauga auugacagcc agugcucuug uguccccucu 60
ggcugccaau uccauagguc acagguaugu ucgccucaau gccagc 106
//
ID bta-mir-199b standard; RNA; BTA; 100 BP.
XX
AC MI0005036;
XX
DE Bos taurus miR-199b stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
DR ENTREZGENE; 791035; MIR199B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0003821"
FT /product="bta-miR-199b"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 100 BP; 19 A; 28 C; 24 G; 0 T; 29 other;
ccuccacucc gucuacccag uguuuagacu aucuguucag gacucccaaa uuguacagua 60
gucugcacau ugguuaggcu gggcuggguu agacccucgg 100
//
ID bta-mir-200a standard; RNA; BTA; 86 BP.
XX
AC MI0005037;
XX
DE Bos taurus miR-200a stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
DR ENTREZGENE; 791036; MIR200A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..74
FT /accession="MIMAT0003822"
FT /product="bta-miR-200a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 86 BP; 17 A; 23 C; 23 G; 0 T; 23 other;
gggccucugu ggacaucuua ccggacagug cuggauuucu cggcucgacu cuaacacugu 60
cugguaacga uguucaaagg ugaccc 86
//
ID bta-mir-200c standard; RNA; BTA; 65 BP.
XX
AC MI0005038;
XX
DE Bos taurus miR-200c stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
DR ENTREZGENE; 791037; MIR200C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 41..63
FT /accession="MIMAT0003823"
FT /product="bta-miR-200c"
FT /evidence=experimental
FT /experiment="cloned [1], Array [2], qRT-PCR [2]"
XX
SQ Sequence 65 BP; 11 A; 12 C; 23 G; 0 T; 19 other;
cgucuuaccc agcaguguuu gggugcuggu ugggagucuc uaauacugcc ggguaaugau 60
ggagg 65
//
ID bta-mir-210 standard; RNA; BTA; 98 BP.
XX
AC MI0005039;
XX
DE Bos taurus miR-210 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
DR ENTREZGENE; 791038; MIR210.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..76
FT /accession="MIMAT0003824"
FT /product="bta-miR-210"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 98 BP; 14 A; 40 C; 30 G; 0 T; 14 other;
ccuccaggcg cagggcagcc acugcccacc gcacacugcg cugcuccgga cccacugugc 60
gugugacagc ggcugaucug ucccugggca gcgcgacc 98
//
ID bta-mir-214 standard; RNA; BTA; 110 BP.
XX
AC MI0005040;
XX
DE Bos taurus miR-214 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
RN [3]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
DR ENTREZGENE; 791039; MIR214.
XX
CC The mature sequence shown here was cloned by Gu et al. [2] and is
CC consistent with that identified in rat (MIR:MI0000954) and zebrafish
CC (MIR:MI0001381). The mature product reported by Coutinho et al. is
CC extended by two bases at the 5' end [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 71..92
FT /accession="MIMAT0003825"
FT /product="bta-miR-214"
FT /evidence=experimental
FT /experiment="cloned [1-2], Array [3], qRT-PCR [3]"
XX
SQ Sequence 110 BP; 24 A; 34 C; 29 G; 0 T; 23 other;
ggccuggcug gacggaguug ucaugugucu gccugucuac acuugcugug cagaacaucc 60
gcucaccugu acagcaggca cagacaggca gucacaugac aacccagccu 110
//
ID bta-mir-22 standard; RNA; BTA; 85 BP.
XX
AC MI0005041;
XX
DE Bos taurus miR-22 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
RN [3]
RX PUBMED; 19267191.
RA Long JE, Chen HX;
RT "Identification and characteristics of cattle microRNAs by homology
RT searching and small RNA cloning";
RL Biochem Genet. 47:329-343(2009).
XX
DR ENTREZGENE; 791040; MIR22.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0003826"
FT /product="bta-miR-22-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Array [2], qRT-PCR [2]"
FT miRNA 53..73
FT /accession="MIMAT0012536"
FT /product="bta-miR-22-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 85 BP; 17 A; 24 C; 22 G; 0 T; 22 other;
ggcugagccg caguaguucu ucaguggcaa gcuuuauguc cugacccagc uaaagcugcc 60
aguugaagaa cuguugcccu cugcc 85
//
ID bta-mir-29b-2 standard; RNA; BTA; 81 BP.
XX
AC MI0005043;
XX
DE Bos taurus miR-29b-2 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
DR ENTREZGENE; 791042; MIR29B-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..74
FT /accession="MIMAT0003828"
FT /product="bta-miR-29b"
FT /evidence=experimental
FT /experiment="cloned [1], Array [2], qRT-PCR [2]"
XX
SQ Sequence 81 BP; 17 A; 14 C; 18 G; 0 T; 32 other;
cuucuggaag cugguuucac augguggcuu agauuuuucc aucuuuguau cuagcaccau 60
uugaaaucag uguuuuagga g 81
//
ID bta-mir-423 standard; RNA; BTA; 94 BP.
XX
AC MI0005046;
XX
DE Bos taurus miR-423 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
RN [3]
RX PUBMED; 19633723.
RA Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ;
RT "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed
RT upon viral infection";
RL PLoS One. 4:e6349(2009).
XX
DR ENTREZGENE; 791045; MIR423.
XX
CC High-throughput sequencing suggests that the dominant miRNA arises from
CC the 5' arm of this precursor [3], in contrast to earlier studies.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0012537"
FT /product="bta-miR-423-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 52..75
FT /accession="MIMAT0003831"
FT /product="bta-miR-423-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Array [2], qRT-PCR [2], Illumina
FT [3]"
XX
SQ Sequence 94 BP; 21 A; 25 C; 25 G; 0 T; 23 other;
auaaaggaag uuaggcugag gggcagagag cgagacuuuu cuauuuucca aaagcucggu 60
cugaggcccc ucagucuugc uuccuacccc gcgc 94
//
ID bta-mir-425 standard; RNA; BTA; 87 BP.
XX
AC MI0005047;
XX
DE Bos taurus miR-425 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
DR ENTREZGENE; 791046; MIR425.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0003832"
FT /product="bta-miR-425-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 55..76
FT /accession="MIMAT0003833"
FT /product="bta-miR-425-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 87 BP; 19 A; 25 C; 24 G; 0 T; 19 other;
gaaagcgcuu uggaaugaca cgaucacucc cguugagugg gcacccaaga agccaucggg 60
aaugucgugu ccgcccagug cucuuuc 87
//
ID bta-mir-455 standard; RNA; BTA; 89 BP.
XX
AC MI0005049;
XX
DE Bos taurus miR-455 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
DR ENTREZGENE; 791048; MIR455.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0003835"
FT /product="bta-miR-455-5p"
FT /evidence=not_experimental
FT /similarity="MI0003516"
FT miRNA 54..75
FT /accession="MIMAT0003836"
FT /product="bta-miR-455-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 89 BP; 19 A; 25 C; 24 G; 0 T; 21 other;
ucccuggcgu gaggguaugu gccuuuggac uacaucgugg aagccagcac caugcagucc 60
augggcauau acacuugccu caaggccua 89
//
ID bta-mir-93 standard; RNA; BTA; 77 BP.
XX
AC MI0005050;
XX
DE Bos taurus miR-93 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
DR ENTREZGENE; 791049; MIR93.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0003837"
FT /product="bta-miR-93"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 77 BP; 13 A; 25 C; 22 G; 0 T; 17 other;
cugggggcuc caaagugcug uucgugcagg uagugugauc accugaccua cugcugagcc 60
agcacuuccc gagcccc 77
//
ID bta-let-7g standard; RNA; BTA; 83 BP.
XX
AC MI0005051;
XX
DE Bos taurus let-7g stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 19267191.
RA Long JE, Chen HX;
RT "Identification and characteristics of cattle microRNAs by homology
RT searching and small RNA cloning";
RL Biochem Genet. 47:329-343(2009).
XX
DR ENTREZGENE; 791050; MIRLET7G.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0003838"
FT /product="bta-let-7g"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 83 BP; 20 A; 18 C; 24 G; 0 T; 21 other;
aggcugaggu aguaguuugu acaguuugag ggucuaugau accacccggu acaggagaua 60
acuguacagg ccacugccuu gcc 83
//
ID bta-mir-24-2 standard; RNA; BTA; 72 BP.
XX
AC MI0005053;
XX
DE Bos taurus miR-24-2 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
DR ENTREZGENE; 791052; MIR24-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..71
FT /accession="MIMAT0003840"
FT /product="bta-miR-24-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 72 BP; 16 A; 21 C; 18 G; 0 T; 17 other;
cucugccucc cgugccuacu gagcugaaac acaguugauu ugugcacacu ggcucaguuc 60
agcaggaaca gg 72
//
ID bta-mir-200b standard; RNA; BTA; 59 BP.
XX
AC MI0005055;
XX
DE Bos taurus miR-200b stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 21912509.
RA Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao
RA Y, Hou M, Zhong J;
RT "Solexa sequencing of novel and differentially expressed microRNAs in
RT testicular and ovarian tissues in Holstein cattle";
RL Int J Biol Sci. 7:1016-1026(2011).
XX
DR ENTREZGENE; 791054; MIR200B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 38..58
FT /accession="MIMAT0003842"
FT /product="bta-miR-200b"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
XX
SQ Sequence 59 BP; 12 A; 12 C; 16 G; 0 T; 19 other;
ccaucuuacu gggcagcauu ggaugguguc uggucucuaa uacugccugg uaaugauga 59
//
ID bta-let-7a-1 standard; RNA; BTA; 80 BP.
XX
AC MI0005057;
XX
DE Bos taurus let-7a-1 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
DR ENTREZGENE; 791056; MIRLET7A-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0003844"
FT /product="bta-let-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 80 BP; 21 A; 15 C; 19 G; 0 T; 25 other;
ugggaugagg uaguagguug uauaguuuua gggucacacc caccacuggg agauaacuau 60
acaaucuacu gucuuuccua 80
//
ID bta-mir-342 standard; RNA; BTA; 94 BP.
XX
AC MI0005059;
XX
DE Bos taurus miR-342 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
RN [3]
RX PUBMED; 19267191.
RA Long JE, Chen HX;
RT "Identification and characteristics of cattle microRNAs by homology
RT searching and small RNA cloning";
RL Biochem Genet. 47:329-343(2009).
XX
DR ENTREZGENE; 791058; MIR342.
XX
CC The miR-342 mature product reported by Gu et al. is truncated at the 3'
CC end [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..85
FT /accession="MIMAT0003846"
FT /product="bta-miR-342"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
XX
SQ Sequence 94 BP; 22 A; 25 C; 30 G; 0 T; 17 other;
uggaagcggg ugcgaggcga ggggugcuau cugugguuga ggacacggca aaugaaacug 60
ucucacacag aaaucgcacc caucuccucg gccc 94
//
ID bta-mir-532 standard; RNA; BTA; 86 BP.
XX
AC MI0005061;
XX
DE Bos taurus miR-532 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
DR ENTREZGENE; 791060; MIR532.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0003848"
FT /product="bta-miR-532"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 86 BP; 18 A; 26 C; 18 G; 0 T; 24 other;
gacuugcuuu cucucuuaca ugccuugagu guaggaccgu uggcaucuua auuacccucc 60
cacacccaag gcuugcagga gagcca 86
//
ID bta-let-7f-1 standard; RNA; BTA; 87 BP.
XX
AC MI0005062;
XX
DE Bos taurus let-7f-1 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
RN [3]
RX PUBMED; 19267191.
RA Long JE, Chen HX;
RT "Identification and characteristics of cattle microRNAs by homology
RT searching and small RNA cloning";
RL Biochem Genet. 47:329-343(2009).
XX
DR ENTREZGENE; 791061; MIRLET7F-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0003519"
FT /product="bta-let-7f"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
XX
SQ Sequence 87 BP; 22 A; 13 C; 22 G; 0 T; 30 other;
ucagagugag guaguagauu guauaguugu gggguaguga uuuuacccug uucaggagau 60
aacuauacaa ucuauugccu ucccuga 87
//
ID bta-mir-30c standard; RNA; BTA; 105 BP.
XX
AC MI0005064;
XX
DE Bos taurus miR-30c stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
DR ENTREZGENE; 791063; MIR30C.
XX
CC The mature miR-30c sequence identified by Sonstegard et al [1] has an
CC additional G base at the 3' end, which conflicts with the draft genome
CC sequence.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..48
FT /accession="MIMAT0003850"
FT /product="bta-miR-30c"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 105 BP; 23 A; 25 C; 29 G; 0 T; 28 other;
cagacuguaa ccaugccgua guguguguaa acauccuaca cucucagcug ugagcucgag 60
guggcuggga gaggguuguu uacuccuucu gccauggaaa acguc 105
//
ID bta-let-7i standard; RNA; BTA; 84 BP.
XX
AC MI0005065;
XX
DE Bos taurus let-7i stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
RN [3]
RX PUBMED; 19267191.
RA Long JE, Chen HX;
RT "Identification and characteristics of cattle microRNAs by homology
RT searching and small RNA cloning";
RL Biochem Genet. 47:329-343(2009).
XX
DR ENTREZGENE; 791064; MIRLET7I.
XX
CC The 5' terminal base of the mature let-7i sequence identified by Coutinho
CC et al [1] is reported as C, which conflicts with the draft genome sequence
CC that requires U as shown here. The 5' end reported by Gu et al. is
CC shorter by 7 nts [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0003851"
FT /product="bta-let-7i"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
XX
SQ Sequence 84 BP; 13 A; 17 C; 28 G; 0 T; 26 other;
cuggcugagg uaguaguuug ugcuguuggu cggguuguga cauugcccgc uguggagaua 60
acugcgcaag cuacugccuu gcua 84
//
ID bta-mir-23b standard; RNA; BTA; 60 BP.
XX
AC MI0005066;
XX
DE Bos taurus miR-23b stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
RN [3]
RX PUBMED; 19633723.
RA Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ;
RT "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed
RT upon viral infection";
RL PLoS One. 4:e6349(2009).
XX
DR ENTREZGENE; 791065; MIR23B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..21
FT /accession="MIMAT0012538"
FT /product="bta-miR-23b-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 38..60
FT /accession="MIMAT0003852"
FT /product="bta-miR-23b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3]"
XX
SQ Sequence 60 BP; 16 A; 12 C; 14 G; 0 T; 18 other;
ggguuccugg caugcugauu ugugacuuaa gauuaaaauc acauugccag ggauuaccac 60
//
ID bta-mir-25 standard; RNA; BTA; 84 BP.
XX
AC MI0005067;
XX
DE Bos taurus miR-25 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
RN [3]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
DR ENTREZGENE; 791066; MIR25.
XX
CC The mature miR-25 sequence identified by Coutinho et al [1] has an
CC additional A base at the 5' end, which conflicts with the draft genome
CC sequence.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..73
FT /accession="MIMAT0003853"
FT /product="bta-miR-25"
FT /evidence=experimental
FT /experiment="cloned [1-2], Array [3], qRT-PCR [3]"
XX
SQ Sequence 84 BP; 12 A; 23 C; 31 G; 0 T; 18 other;
ggccaguguu gagaggcgga gacuugggca auugcuggac gcugccccgg gcauugcacu 60
ugucucgguc ugacagugcc ggcc 84
//
ID bta-mir-363 standard; RNA; BTA; 74 BP.
XX
AC MI0005069;
XX
DE Bos taurus miR-363 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
DR ENTREZGENE; 791068; MIR363.
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..71
FT /accession="MIMAT0003855"
FT /product="bta-miR-363"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 74 BP; 22 A; 11 C; 19 G; 0 T; 22 other;
uguugucggg uggaucacga ugcaauuuug auuaguauaa uaggagaaaa auugcacggu 60
auccaucugc gaac 74
//
ID cel-mir-786 standard; RNA; CEL; 90 BP.
XX
AC MI0005186;
XX
DE Caenorhabditis elegans miR-786 stem-loop
XX
RN [1]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [2]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [3]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0015239"
FT /product="cel-miR-786-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [3]"
FT miRNA 54..76
FT /accession="MIMAT0004221"
FT /product="cel-miR-786-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2], CLIPseq [3]"
XX
SQ Sequence 90 BP; 29 A; 14 C; 21 G; 0 T; 26 other;
gggauaguuc ccgaucgaau aucaguuggg guauuuacaa aaagacaaaa uuguaaugcc 60
cugaaugaug uucaaucggu gaugaaucuc 90
//
ID cel-mir-788 standard; RNA; CEL; 78 BP.
XX
AC MI0005188;
XX
DE Caenorhabditis elegans miR-788 stem-loop
XX
RN [1]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [2]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [3]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [4]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..33
FT /accession="MIMAT0004223"
FT /product="cel-miR-788-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2,4], CLIPseq [3]"
FT miRNA 48..71
FT /accession="MIMAT0015240"
FT /product="cel-miR-788-3p"
FT /evidence=experimental
FT /experiment="CLIPseq [3], Illumina [4]"
XX
SQ Sequence 78 BP; 22 A; 14 C; 16 G; 0 T; 26 other;
gcucacuuuu ccgcuucuaa cuuccauuug cagaguucaa guaaucugga aauggauuag 60
aaucguggaa aaguuagu 78
//
ID cel-mir-789-1 standard; RNA; CEL; 97 BP.
XX
AC MI0005189;
XX
DE Caenorhabditis elegans miR-789-1 stem-loop
XX
RN [1]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [2]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0032016"
FT /product="cel-miR-789-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 60..82
FT /accession="MIMAT0004224"
FT /product="cel-miR-789-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 97 BP; 23 A; 28 C; 26 G; 0 T; 20 other;
uguccugaag gcaggcaauu gaugacccag acaaggacua aucaagauug ucgaucuagu 60
cccugccugg gucaccaauu gucggccccc gcgggca 97
//
ID cel-mir-789-2 standard; RNA; CEL; 97 BP.
XX
AC MI0005190;
XX
DE Caenorhabditis elegans miR-789-2 stem-loop
XX
RN [1]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [2]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0032017"
FT /product="cel-miR-789-2-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 60..82
FT /accession="MIMAT0004224"
FT /product="cel-miR-789-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 97 BP; 21 A; 26 C; 27 G; 0 T; 23 other;
uguccugaag gcggacaauu gaugacucag gcagggacua aucaugauug ucgauuuagu 60
cccugccugg gucaccaauu gucggccccc gcggaca 97
//
ID cel-mir-790 standard; RNA; CEL; 70 BP.
XX
AC MI0005191;
XX
DE Caenorhabditis elegans miR-790 stem-loop
XX
RN [1]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [2]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [3]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0004225"
FT /product="cel-miR-790-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2-3]"
FT miRNA 45..67
FT /accession="MIMAT0020349"
FT /product="cel-miR-790-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 70 BP; 13 A; 23 C; 18 G; 0 T; 16 other;
gccggcuugg cacucgcgaa caccgcgauu ucacuuauaa cucgcggcgu uagcucugug 60
ucaaaccggc 70
//
ID cel-mir-791 standard; RNA; CEL; 85 BP.
XX
AC MI0005192;
XX
DE Caenorhabditis elegans miR-791 stem-loop
XX
RN [1]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [2]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [3]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [4]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0020350"
FT /product="cel-miR-791-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 52..75
FT /accession="MIMAT0004226"
FT /product="cel-miR-791-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2,4], CLIPseq [3]"
XX
SQ Sequence 85 BP; 23 A; 21 C; 18 G; 0 T; 23 other;
gaaccuucga uuaccuuauc cguuguagcc aaaguucaac gaagcggcaa cuuuggcacu 60
ccgcagauaa ggcaaucgau uguuu 85
//
ID cel-mir-794 standard; RNA; CEL; 84 BP.
XX
AC MI0005195;
XX
DE Caenorhabditis elegans miR-794 stem-loop
XX
RN [1]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [2]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [3]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0004229"
FT /product="cel-miR-794-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2-3]"
FT miRNA 52..73
FT /accession="MIMAT0020352"
FT /product="cel-miR-794-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 84 BP; 21 A; 16 C; 20 G; 0 T; 27 other;
cugagcgugu cucuugaggu aaucaucguu gucacuucgc aaaguuggaa uugaaaacgu 60
ugucuaucuc gaaaggcuua ucag 84
//
ID cel-mir-795 standard; RNA; CEL; 89 BP.
XX
AC MI0005196;
XX
DE Caenorhabditis elegans miR-795 stem-loop
XX
RN [1]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [2]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [3]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [4]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0004230"
FT /product="cel-miR-795-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2,4], CLIPseq [3]"
FT miRNA 53..75
FT /accession="MIMAT0020353"
FT /product="cel-miR-795-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 89 BP; 22 A; 19 C; 21 G; 0 T; 27 other;
gaaacguuac cugcugaggu agauugauca gcgagcuuga uaccccguuc aaaaucguga 60
ucaguauacu ucgucaggca gcuuguuuu 89
//
ID cel-mir-797 standard; RNA; CEL; 89 BP.
XX
AC MI0005198;
XX
DE Caenorhabditis elegans miR-797 stem-loop
XX
RN [1]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [2]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [3]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..39
FT /accession="MIMAT0004232"
FT /product="cel-miR-797-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2], CLIPseq [3]"
FT miRNA 56..77
FT /accession="MIMAT0015241"
FT /product="cel-miR-797-3p"
FT /evidence=experimental
FT /experiment="CLIPseq [3]"
XX
SQ Sequence 89 BP; 29 A; 16 C; 16 G; 0 T; 28 other;
cguccaaugg acgauaucac agcaaucaca augagaagaa uacaucuaga uacucuuuuc 60
auugguuucu gugaaaucgu auuugaaug 89
//
ID cel-mir-800 standard; RNA; CEL; 73 BP.
XX
AC MI0005201;
XX
DE Caenorhabditis elegans miR-800 stem-loop
XX
RN [1]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [2]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [3]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0020354"
FT /product="cel-miR-800-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 46..67
FT /accession="MIMAT0004235"
FT /product="cel-miR-800-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2-3]"
XX
SQ Sequence 73 BP; 17 A; 20 C; 18 G; 0 T; 18 other;
acggcggcug acaauuuccg aguuaggcca cucuuauaau caguggccaa acucggaaau 60
ugucugccgc cgu 73
//
ID mmu-mir-741 standard; RNA; MMU; 71 BP.
XX
AC MI0005205;
XX
DE Mus musculus miR-741 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17989215.
RA Calabrese JM, Seila AC, Yeo GW, Sharp PA;
RT "RNA sequence analysis defines Dicer's role in mouse embryonic stem
RT cells";
RL Proc Natl Acad Sci U S A. 104:18097-18102(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3709839; Mir741.
DR ENTREZGENE; 100049545; Mir741.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0017262"
FT /product="mmu-miR-741-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 45..67
FT /accession="MIMAT0004236"
FT /product="mmu-miR-741-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4-5]"
XX
SQ Sequence 71 BP; 23 A; 10 C; 14 G; 0 T; 24 other;
uugaucuacg uagauuggua ccuaucaugu aaaucaugua agcaugagag augccauucu 60
auguagauua a 71
//
ID mmu-mir-742 standard; RNA; MMU; 65 BP.
XX
AC MI0005206;
XX
DE Mus musculus miR-742 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17989215.
RA Calabrese JM, Seila AC, Yeo GW, Sharp PA;
RT "RNA sequence analysis defines Dicer's role in mouse embryonic stem
RT cells";
RL Proc Natl Acad Sci U S A. 104:18097-18102(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3709840; Mir742.
DR ENTREZGENE; 100049548; Mir742.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0004838"
FT /product="mmu-miR-742-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [4-5]"
FT miRNA 41..62
FT /accession="MIMAT0004237"
FT /product="mmu-miR-742-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4-5]"
XX
SQ Sequence 65 BP; 18 A; 13 C; 17 G; 0 T; 17 other;
ugcucuacuc acaugguugc uaaucacgug aaguguaggu gaaagccacc augcugggua 60
aagua 65
//
ID mmu-mir-743a standard; RNA; MMU; 62 BP.
XX
AC MI0005207;
XX
DE Mus musculus miR-743a stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3709841; Mirn743.
DR ENTREZGENE; 100049546; Mir743.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0017263"
FT /product="mmu-miR-743a-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 38..59
FT /accession="MIMAT0004238"
FT /product="mmu-miR-743a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 62 BP; 20 A; 9 C; 15 G; 0 T; 18 other;
cuguauucag auuggugccu gucauguuua uaagaaugaa agacaccaag cugaguagag 60
ua 62
//
ID mdo-mir-9a-2 standard; RNA; MDO; 87 BP.
XX
AC MI0005271;
XX
DE Monodelphis domestica miR-9a-2 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
DR ENTREZGENE; 100034312; MIR9-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0004087"
FT /product="mdo-miR-9a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000840"
FT miRNA 53..74
FT /accession="MIMAT0004088"
FT /product="mdo-miR-9a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000840"
XX
SQ Sequence 87 BP; 26 A; 12 C; 19 G; 0 T; 30 other;
ggaagugagu uguuaucuuu gguuaucuag cuguaugagu guauuggucu ucauaaagcu 60
agauaaccga aaguaaaaac uccuuca 87
//
ID mdo-mir-10a standard; RNA; MDO; 90 BP.
XX
AC MI0005273;
XX
DE Monodelphis domestica miR-10a stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034314; MIR10A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0004089"
FT /product="mdo-miR-10a-5p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0000841"
FT miRNA 57..77
FT /accession="MIMAT0026648"
FT /product="mdo-miR-10a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 90 BP; 24 A; 13 C; 20 G; 0 T; 33 other;
cugucuucug uauauacccu guagauccga auuuguguaa ggaauuuugu ggucacaaau 60
ucguaucuag gggaauaugu aguugacaua 90
//
ID mdo-mir-22 standard; RNA; MDO; 81 BP.
XX
AC MI0005276;
XX
DE Monodelphis domestica miR-22 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034317; MIR22.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0026651"
FT /product="mdo-miR-22-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 51..72
FT /accession="MIMAT0004092"
FT /product="mdo-miR-22-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0000570"
XX
SQ Sequence 81 BP; 17 A; 22 C; 21 G; 0 T; 21 other;
ccgagccaca gcaguucuuc aguggcgagc uuuaugucuu gucccagcua aagcugccag 60
uugaagaacu gcugagcucu g 81
//
ID mdo-mir-30a standard; RNA; MDO; 72 BP.
XX
AC MI0005277;
XX
DE Monodelphis domestica miR-30a stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034318; MIR30A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0004093"
FT /product="mdo-miR-30a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001204"
FT miRNA 49..69
FT /accession="MIMAT0026652"
FT /product="mdo-miR-30a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 72 BP; 15 A; 16 C; 24 G; 0 T; 17 other;
gcggcuguaa acauccucga cuggaagcug ugaagcagca gauggggcuu ucagucggau 60
guuugcagcu gc 72
//
ID mdo-mir-31 standard; RNA; MDO; 87 BP.
XX
AC MI0005278;
XX
DE Monodelphis domestica miR-31 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034319; MIR31.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..33
FT /accession="MIMAT0004094"
FT /product="mdo-miR-31-5p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0000579"
FT miRNA 49..70
FT /accession="MIMAT0026653"
FT /product="mdo-miR-31-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 87 BP; 23 A; 18 C; 22 G; 0 T; 24 other;
agcuggagag gaggcaagau guuggcauag cuguugaacu gagaaccugc uaugccaaca 60
uauugccauc uuucuugucu aucagca 87
//
ID mdo-mir-32 standard; RNA; MDO; 69 BP.
XX
AC MI0005279;
XX
DE Monodelphis domestica miR-32 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034320; MIR32.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0004095"
FT /product="mdo-miR-32-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000090"
FT miRNA 48..67
FT /accession="MIMAT0026654"
FT /product="mdo-miR-32-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 69 BP; 17 A; 8 C; 16 G; 0 T; 28 other;
ggagauauug cacauuacua aguugcaugu ugucacggcu uuagugcaau uuaguaugug 60
ugauauuuu 69
//
ID mdo-mir-34a standard; RNA; MDO; 111 BP.
XX
AC MI0005280;
XX
DE Monodelphis domestica miR-34a stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034321; MIR34A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0004096"
FT /product="mdo-miR-34a-5p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0000268"
FT miRNA 66..87
FT /accession="MIMAT0026655"
FT /product="mdo-miR-34a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 111 BP; 25 A; 20 C; 33 G; 0 T; 33 other;
ggccagcugu gaguguuucu uuggcagugu cuuagcuggu uguugugagu aauagauaag 60
gaagcaauca gcaaguauac ugcccuagaa gugcugcacg uuguuaggcc c 111
//
ID mdo-mir-100 standard; RNA; MDO; 80 BP.
XX
AC MI0005281;
XX
DE Monodelphis domestica miR-100 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034322; MIR100.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0004097"
FT /product="mdo-miR-100-5p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0001258"
FT miRNA 49..69
FT /accession="MIMAT0026656"
FT /product="mdo-miR-100-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 80 BP; 18 A; 19 C; 19 G; 0 T; 24 other;
ccuguugcca caaacccgua gauccgaacu uguggugaua uuccacacaa gcuugugucu 60
auagguaugu gucugucagg 80
//
ID mdo-mir-101-1 standard; RNA; MDO; 83 BP.
XX
AC MI0005283;
XX
DE Monodelphis domestica miR-101-1 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034324; MIR101-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0031076"
FT /product="mdo-miR-101-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 51..72
FT /accession="MIMAT0004098"
FT /product="mdo-miR-101-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000148"
XX
SQ Sequence 83 BP; 19 A; 20 C; 23 G; 0 T; 21 other;
aggcugcccu ggcucaguua ucacagugcu gaugcugucc guucucaagg uacaguacug 60
ugauaacuga aggauggcag cca 83
//
ID mdo-mir-103-1 standard; RNA; MDO; 76 BP.
XX
AC MI0005284;
XX
DE Monodelphis domestica miR-103-1 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034325; MIR103-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..31
FT /accession="MIMAT0026658"
FT /product="mdo-miR-103-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 46..68
FT /accession="MIMAT0004099"
FT /product="mdo-miR-103-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0000587"
XX
SQ Sequence 76 BP; 16 A; 15 C; 19 G; 0 T; 26 other;
uugucuucgg cuucuuuaca gugcugccuu guugcauaug gaucaagcag cauuguacag 60
ggcuaugaag acauug 76
//
ID mdo-mir-103-2 standard; RNA; MDO; 84 BP.
XX
AC MI0005285;
XX
DE Monodelphis domestica miR-103-2 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034326; MIR103-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0031097"
FT /product="mdo-miR-103-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 50..72
FT /accession="MIMAT0004099"
FT /product="mdo-miR-103-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0000588"
XX
SQ Sequence 84 BP; 20 A; 17 C; 20 G; 0 T; 27 other;
cuuggugcuu ucagcuucuu uacagugcug ccuuguugca uugaugucaa gcagcauugu 60
acagggcuau gaaagaacca agau 84
//
ID mdo-mir-124a-1 standard; RNA; MDO; 85 BP.
XX
AC MI0005288;
XX
DE Monodelphis domestica miR-124a-1 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034329; MIR124A-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0026660"
FT /product="mdo-miR-124a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 52..73
FT /accession="MIMAT0004102"
FT /product="mdo-miR-124a-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0000443"
XX
SQ Sequence 85 BP; 21 A; 21 C; 22 G; 0 T; 21 other;
aggccucucu cuccguguuc acagcggacc uugauuuaaa uguccauaca auuaaggcac 60
gcggugaaug ccaagaaugg ggcug 85
//
ID mdo-mir-124a-2 standard; RNA; MDO; 93 BP.
XX
AC MI0005289;
XX
DE Monodelphis domestica miR-124a-2 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034330; MIR124A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0026660"
FT /product="mdo-miR-124a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 56..77
FT /accession="MIMAT0004102"
FT /product="mdo-miR-124a-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0000717"
XX
SQ Sequence 93 BP; 26 A; 22 C; 23 G; 0 T; 22 other;
aucagagacu cugucucucc guguucacag cggaccuuga uuuaauguca uacaauuaag 60
gcacgcggug aaugccaaga gcggagccug aaa 93
//
ID mdo-mir-124a-3 standard; RNA; MDO; 68 BP.
XX
AC MI0005290;
XX
DE Monodelphis domestica miR-124a-3 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034331; MIR124A-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..27
FT /accession="MIMAT0026660"
FT /product="mdo-miR-124a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 43..64
FT /accession="MIMAT0004102"
FT /product="mdo-miR-124a-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0000445"
XX
SQ Sequence 68 BP; 18 A; 15 C; 17 G; 0 T; 18 other;
cucugcgugu ucacagcgga ccuugauuua augucuauac aauuaaggca cgcggugaau 60
gccaagag 68
//
ID mdo-mir-125b-1 standard; RNA; MDO; 82 BP.
XX
AC MI0005291;
XX
DE Monodelphis domestica miR-125b-1 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034332; MIR125B-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0004103"
FT /product="mdo-miR-125b-5p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0001175"
FT miRNA 52..73
FT /accession="MIMAT0026661"
FT /product="mdo-miR-125b-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 82 BP; 17 A; 23 C; 22 G; 0 T; 20 other;
acuuuuccua gucccugaga cccuaacuug ugaggcuuuu cagcgacaac cacaggucag 60
gcucuuggga ccuaggcgga gg 82
//
ID mdo-mir-125b-2 standard; RNA; MDO; 63 BP.
XX
AC MI0005292;
XX
DE Monodelphis domestica miR-125b-2 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034333; MIR125B-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..24
FT /accession="MIMAT0004103"
FT /product="mdo-miR-125b-5p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0004753"
FT miRNA 43..63
FT /accession="MIMAT0031106"
FT /product="mdo-miR-125b-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 63 BP; 14 A; 15 C; 15 G; 0 T; 19 other;
aaucccugag acccuaacuu gugauguuua ccguuuaaau ccacggguua ggcucuuggg 60
agc 63
//
ID mdo-mir-128a standard; RNA; MDO; 84 BP.
XX
AC MI0005293;
XX
DE Monodelphis domestica miR-128a stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034334; MIR128.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0026662"
FT /product="mdo-miR-128a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 52..72
FT /accession="MIMAT0004104"
FT /product="mdo-miR-128a-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0001192"
XX
SQ Sequence 84 BP; 16 A; 20 C; 29 G; 0 T; 19 other;
ugugcagcag gaaggggggc cguuacacug ucagagagug aguagcaggu cucacaguga 60
accggucucu uucccugcug uggc 84
//
ID mdo-mir-129 standard; RNA; MDO; 74 BP.
XX
AC MI0005294;
XX
DE Monodelphis domestica miR-129 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034335; MIR129.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0004105"
FT /product="mdo-miR-129-5p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0000252"
FT miRNA 50..70
FT /accession="MIMAT0026663"
FT /product="mdo-miR-129-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 74 BP; 17 A; 17 C; 16 G; 0 T; 24 other;
uggaucuuuu ugcggucugg gcuugcuguu ccuuaaauca guagucagga agcccuuacc 60
ccaaaaagua ucua 74
//
ID mdo-mir-133a-1 standard; RNA; MDO; 87 BP.
XX
AC MI0005296;
XX
DE Monodelphis domestica miR-133a-1 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034337; MIR133A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0026665"
FT /product="mdo-miR-133a-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 53..74
FT /accession="MIMAT0004107"
FT /product="mdo-miR-133a-3p"
FT /evidence=experimental
FT /experiment="PCR [1], Illumina [2]"
FT /similarity="MI0001993"
XX
SQ Sequence 87 BP; 26 A; 20 C; 16 G; 0 T; 25 other;
caaugcuuug cuaaagcugg uaaaauggaa ccaaaucacc uauucaaugg auuugguccc 60
cuucaaccag cuguagcuau gcauuga 87
//
ID mdo-mir-135a standard; RNA; MDO; 100 BP.
XX
AC MI0005297;
XX
DE Monodelphis domestica miR-135a stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034338; MIR135A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0004108"
FT /product="mdo-miR-135a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000453"
FT miRNA 61..82
FT /accession="MIMAT0026666"
FT /product="mdo-miR-135a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 100 BP; 32 A; 13 C; 20 G; 0 T; 35 other;
agauaaauuc acucuagugu cuuauggcuu uuuauuccua ugugauagua auaaagucuc 60
auguagggau ggaagccaug aaauacauug ugaaauguca 100
//
ID mdo-mir-135b standard; RNA; MDO; 100 BP.
XX
AC MI0005298;
XX
DE Monodelphis domestica miR-135b stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034339; MIR135B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0004109"
FT /product="mdo-miR-135b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000645"
FT miRNA 57..78
FT /accession="MIMAT0026667"
FT /product="mdo-miR-135b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 100 BP; 19 A; 25 C; 28 G; 0 T; 28 other;
agcucucugc uguggccuau ggcuuuucau uccuauguga uugcuguucc caacucaugu 60
agggcuaaaa gccaugggcu acagggaggg gagagccucc 100
//
ID mdo-mir-143 standard; RNA; MDO; 63 BP.
XX
AC MI0005302;
XX
DE Monodelphis domestica miR-143 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034343; MIR143.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..26
FT /accession="MIMAT0026668"
FT /product="mdo-miR-143-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 40..61
FT /accession="MIMAT0004113"
FT /product="mdo-miR-143-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0000459"
XX
SQ Sequence 63 BP; 11 A; 14 C; 22 G; 0 T; 16 other;
cccgaggugc agugcugcau cucuggucag uugugagucu gagaugaagc acuguagcuc 60
ggg 63
//
ID mdo-mir-144 standard; RNA; MDO; 85 BP.
XX
AC MI0005303;
XX
DE Monodelphis domestica miR-144 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034344; MIR144.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0026669"
FT /product="mdo-miR-144-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 52..73
FT /accession="MIMAT0004114"
FT /product="mdo-miR-144-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0004996"
XX
SQ Sequence 85 BP; 21 A; 19 C; 26 G; 0 T; 19 other;
cggggcccag gccgggauau caucguauac uguaaguuug caaugagaca cuacaguaua 60
gaugauguac uggcgagggc cgccu 85
//
ID mdo-mir-152 standard; RNA; MDO; 73 BP.
XX
AC MI0005306;
XX
DE Monodelphis domestica miR-152 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034347; MIR152.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0026671"
FT /product="mdo-miR-152-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 47..68
FT /accession="MIMAT0004117"
FT /product="mdo-miR-152-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0000174"
XX
SQ Sequence 73 BP; 15 A; 20 C; 21 G; 0 T; 17 other;
cccggcccag guucugugau acacuccgac uuagacucug gagcagucag ugcaugacag 60
aacuugggcu ugg 73
//
ID mdo-mir-184 standard; RNA; MDO; 84 BP.
XX
AC MI0005308;
XX
DE Monodelphis domestica miR-184 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034349; MIR184.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0026673"
FT /product="mdo-miR-184-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 53..74
FT /accession="MIMAT0004119"
FT /product="mdo-miR-184-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0000226"
XX
SQ Sequence 84 BP; 21 A; 20 C; 18 G; 0 T; 25 other;
ccagucacau ccccuuauca cuuuuccagc ccagcuuucu aaugcuaauu guuggacgga 60
gaacugauaa ggguagguga uuga 84
//
ID mdo-mir-187 standard; RNA; MDO; 81 BP.
XX
AC MI0005309;
XX
DE Monodelphis domestica miR-187 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034350; MIR187.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0026674"
FT /product="mdo-miR-187-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 51..70
FT /accession="MIMAT0004120"
FT /product="mdo-miR-187-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0001193"
XX
SQ Sequence 81 BP; 18 A; 21 C; 23 G; 0 T; 19 other;
auugugagac cucuggcuac aacacaggac acgggagcuu uucugaaccc ucgugucuug 60
uguugcagcc agaggggcac a 81
//
ID mdo-mir-181a-3 standard; RNA; MDO; 72 BP.
XX
AC MI0005310;
XX
DE Monodelphis domestica miR-181a-3 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034351; MIR181C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0004154"
FT /product="mdo-miR-181a-5p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0005032"
FT miRNA 49..69
FT /accession="MIMAT0031039"
FT /product="mdo-miR-181a-3-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 72 BP; 17 A; 17 C; 24 G; 0 T; 14 other;
ugggggaaca uucaacgcug ucggugaguu ugagcagcug aaggcaaacc aucgaccguu 60
gaguggaccc cg 72
//
ID mdo-mir-186 standard; RNA; MDO; 68 BP.
XX
AC MI0005311;
XX
DE Monodelphis domestica miR-186 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034352; MIR186.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0004122"
FT /product="mdo-miR-186-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0005033"
FT miRNA 47..67
FT /accession="MIMAT0026676"
FT /product="mdo-miR-186-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 68 BP; 16 A; 13 C; 12 G; 0 T; 27 other;
accuuccaaa gaauucuccu uuugggcuuu ugauucuuaa uuucagccca aaggugaauu 60
uuuuggga 68
//
ID mdo-mir-193a standard; RNA; MDO; 66 BP.
XX
AC MI0005312;
XX
DE Monodelphis domestica miR-193a stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034353; MIR193.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0026677"
FT /product="mdo-miR-193a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 41..61
FT /accession="MIMAT0004123"
FT /product="mdo-miR-193a-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0000936"
XX
SQ Sequence 66 BP; 13 A; 13 C; 22 G; 0 T; 18 other;
gaggauuggg ucuuuguggg cgagaugagg gugucaguuc aacuggccua caaaguccca 60
guucuc 66
//
ID mdo-mir-199b-1 standard; RNA; MDO; 89 BP.
XX
AC MI0005314;
XX
DE Monodelphis domestica miR-199b-1 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034355; MIR199B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0004125"
FT /product="mdo-miR-199b-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000282"
FT miRNA 54..74
FT /accession="MIMAT0026678"
FT /product="mdo-miR-199b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 89 BP; 17 A; 23 C; 21 G; 0 T; 28 other;
cuccacuccg ucuacccagu guuuagacua ucuguucagg acuccaauau uguacaguag 60
ucugcacauu gguuaggcug ggcugggcu 89
//
ID mdo-mir-219-1 standard; RNA; MDO; 91 BP.
XX
AC MI0005323;
XX
DE Monodelphis domestica miR-219-1 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034260; MIR219.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0004134"
FT /product="mdo-miR-219-5p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0001385"
FT miRNA 59..80
FT /accession="MIMAT0026681"
FT /product="mdo-miR-219-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 91 BP; 17 A; 25 C; 27 G; 0 T; 22 other;
cagggguucc gccgcugauu guccaaacgc aauucuugug cgagucugca gccaaccgag 60
aauuguggcu ggacaucugu ggcugagcuc c 91
//
ID mdo-mir-223 standard; RNA; MDO; 111 BP.
XX
AC MI0005324;
XX
DE Monodelphis domestica miR-223 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034261; MIR223.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..52
FT /accession="MIMAT0026682"
FT /product="mdo-miR-223-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 72..92
FT /accession="MIMAT0004135"
FT /product="mdo-miR-223-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000963"
XX
SQ Sequence 111 BP; 24 A; 29 C; 27 G; 0 T; 31 other;
ucuggcccag auccuucagu gccacacucc guguauuuga caagcugagu uggacacucc 60
gugucguaga gugucaguuu gucaaauacc ccaagugagg cauuugccua g 111
//
ID mdo-mir-338 standard; RNA; MDO; 89 BP.
XX
AC MI0005325;
XX
DE Monodelphis domestica miR-338 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
DR ENTREZGENE; 100034262; MIR338.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..74
FT /accession="MIMAT0004136"
FT /product="mdo-miR-338"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1]"
FT /similarity="MI0000618"
XX
SQ Sequence 89 BP; 20 A; 23 C; 25 G; 0 T; 21 other;
ggccuuccuc cccaacaaua uccugaugcu gagugagcgg cacauggaga cuccagcauc 60
agugauuuug uugaagaggg uggcugcca 89
//
ID mdo-mir-365 standard; RNA; MDO; 87 BP.
XX
AC MI0005326;
XX
DE Monodelphis domestica miR-365 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034263; MIR365.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0026683"
FT /product="mdo-miR-365-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 55..76
FT /accession="MIMAT0004137"
FT /product="mdo-miR-365-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000767"
XX
SQ Sequence 87 BP; 23 A; 19 C; 20 G; 0 T; 25 other;
ccgcagggaa aaugagggac uuuugggggc agauguguuu ccauuacacu aucauaaugc 60
cccuaaaaau ccuuauugcu cuugcag 87
//
ID mdo-mir-383 standard; RNA; MDO; 70 BP.
XX
AC MI0005328;
XX
DE Monodelphis domestica miR-383 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034265; MIR383.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0004139"
FT /product="mdo-miR-383-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000800"
FT miRNA 45..65
FT /accession="MIMAT0026684"
FT /product="mdo-miR-383-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 70 BP; 20 A; 14 C; 21 G; 0 T; 15 other;
cucagaucag aaggugauug uggcuuucgg uagacaugga acagccacau cacuggcugg 60
ucagaaagag 70
//
ID mdo-let-7a-2 standard; RNA; MDO; 73 BP.
XX
AC MI0005330;
XX
DE Monodelphis domestica let-7a-2 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034267; MIRLET7A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0004141"
FT /product="mdo-let-7a-5p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0000061"
FT miRNA 50..71
FT /accession="MIMAT0026686"
FT /product="mdo-let-7a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 73 BP; 20 A; 11 C; 18 G; 0 T; 24 other;
agguugaggu aguagguugu auaguuuaga auuacaucaa gggagauaac uguacagccu 60
ccuagcuuuc cuu 73
//
ID mdo-let-7g standard; RNA; MDO; 83 BP.
XX
AC MI0005331;
XX
DE Monodelphis domestica let-7g stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034268; MIRLET7G.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..25
FT /accession="MIMAT0004142"
FT /product="mdo-let-7g-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000137"
FT miRNA 62..83
FT /accession="MIMAT0026687"
FT /product="mdo-let-7g-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 83 BP; 20 A; 18 C; 24 G; 0 T; 21 other;
aggcugaggu aguaguuugu acaguuugag ggucuaugau accacccggu acaggagaua 60
acuguacagg ccacugccuu gcc 83
//
ID mdo-let-7i standard; RNA; MDO; 84 BP.
XX
AC MI0005332;
XX
DE Monodelphis domestica let-7i stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034269; MIRLET7I.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0004143"
FT /product="mdo-let-7i-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000138"
FT miRNA 63..83
FT /accession="MIMAT0026688"
FT /product="mdo-let-7i-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 84 BP; 13 A; 17 C; 28 G; 0 T; 26 other;
cuggcugagg uaguaguuug ugcuguuggu cggguuguga cauugcccgc uguggagaua 60
acugcgcaag cuacugccuu gcua 84
//
ID mdo-mir-16-1 standard; RNA; MDO; 90 BP.
XX
AC MI0005334;
XX
DE Monodelphis domestica miR-16-1 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034271; MIR16.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0004145"
FT /product="mdo-miR-16-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000070"
FT miRNA 56..78
FT /accession="MIMAT0026690"
FT /product="mdo-miR-16-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 90 BP; 26 A; 16 C; 21 G; 0 T; 27 other;
gucaacagug ccuuagcagc acguaaauau uggcguuaag auuuuaaaag uaucuccagu 60
auuaacugug cugcugaagu aagguuggcc 90
//
ID mdo-mir-212 standard; RNA; MDO; 91 BP.
XX
AC MI0005337;
XX
DE Monodelphis domestica miR-212 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034274; MIR212.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0026692"
FT /product="mdo-miR-212-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 56..76
FT /accession="MIMAT0004148"
FT /product="mdo-miR-212-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0003385"
XX
SQ Sequence 91 BP; 14 A; 38 C; 25 G; 0 T; 14 other;
gggcagcgcg ccggcaccuu ggcucuagac ugcuuacugc ccgggccacc cucaguaaca 60
gucuccaguc acggccaccg acgccuggcc c 91
//
ID mdo-mir-132 standard; RNA; MDO; 66 BP.
XX
AC MI0005338;
XX
DE Monodelphis domestica miR-132 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034275; MIR132.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0026693"
FT /product="mdo-miR-132-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 42..63
FT /accession="MIMAT0004149"
FT /product="mdo-miR-132-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0000905"
XX
SQ Sequence 66 BP; 13 A; 17 C; 21 G; 0 T; 15 other;
gggcaaccgu ggcuuucgau uguuacugug ggaaccaggg guaacagucu acagccaugg 60
ucgccc 66
//
ID mdo-mir-200c standard; RNA; MDO; 68 BP.
XX
AC MI0005339;
XX
DE Monodelphis domestica miR-200c stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034276; MIR200C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0026694"
FT /product="mdo-miR-200c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 44..65
FT /accession="MIMAT0004150"
FT /product="mdo-miR-200c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000694"
XX
SQ Sequence 68 BP; 12 A; 18 C; 21 G; 0 T; 17 other;
ccccaucuua cccagcagug uuugggugcc gcucgggagu cucuaauacu gccggguaau 60
gauggagg 68
//
ID mdo-mir-141 standard; RNA; MDO; 64 BP.
XX
AC MI0005340;
XX
DE Monodelphis domestica miR-141 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034277; MIR141.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..28
FT /accession="MIMAT0026695"
FT /product="mdo-miR-141-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 41..62
FT /accession="MIMAT0004151"
FT /product="mdo-miR-141-3p"
FT /evidence=experimental
FT /experiment="PCR [1], Illumina [2]"
FT /similarity="MI0000457"
XX
SQ Sequence 64 BP; 14 A; 14 C; 19 G; 0 T; 17 other;
uggggccauc uuccaguaca gugguggaug gugaagcuuc uaacacuguc ugguaaagau 60
gccc 64
//
ID mdo-mir-191 standard; RNA; MDO; 74 BP.
XX
AC MI0005341;
XX
DE Monodelphis domestica miR-191 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034278; MIR191.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0004152"
FT /product="mdo-miR-191-5p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0000934"
FT miRNA 49..70
FT /accession="MIMAT0026696"
FT /product="mdo-miR-191-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 74 BP; 17 A; 21 C; 18 G; 0 T; 18 other;
agcgggcaac ggaaucccaa aagcagcugu ugucuccaga gcauuccagc ugcaauugga 60
uuucguuccc ugcu 74
//
ID mdo-mir-425 standard; RNA; MDO; 85 BP.
XX
AC MI0005342;
XX
DE Monodelphis domestica miR-425 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034279; MIR425.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0026697"
FT /product="mdo-miR-425-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 54..75
FT /accession="MIMAT0004153"
FT /product="mdo-miR-425-3p"
FT /evidence=experimental
FT /experiment="PCR [1], Illumina [2]"
FT /similarity="MI0001447"
XX
SQ Sequence 85 BP; 22 A; 22 C; 21 G; 0 T; 20 other;
aaagugcuuu ggaaugacac gaucacuccc guugagcgga cagccaagaa gccaucggga 60
auaucguguc cguccaaugc ucuuu 85
//
ID mdo-mir-181a-1 standard; RNA; MDO; 64 BP.
XX
AC MI0005343;
XX
DE Monodelphis domestica miR-181a-1 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034280; MIR181A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..25
FT /accession="MIMAT0004154"
FT /product="mdo-miR-181a-5p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0000289"
FT miRNA 44..64
FT /accession="MIMAT0026698"
FT /product="mdo-miR-181a-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 64 BP; 20 A; 12 C; 14 G; 0 T; 18 other;
ugaacauuca acgcugucgg ugaguuugga auuaaaauga aaaccaucga ccguugauug 60
uacc 64
//
ID mdo-mir-181b-1 standard; RNA; MDO; 87 BP.
XX
AC MI0005344;
XX
DE Monodelphis domestica miR-181b-1 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034281; MIR181B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0004155"
FT /product="mdo-miR-181b-5p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0000270"
FT miRNA 54..74
FT /accession="MIMAT0026699"
FT /product="mdo-miR-181b-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 87 BP; 25 A; 20 C; 19 G; 0 T; 23 other;
aaggucacaa ucaacauuca uugcugucgg uggguuuaac uguauggaca agcucacuga 60
acaaugaaug caacuguggc cccacuu 87
//
ID mdo-mir-200b standard; RNA; MDO; 68 BP.
XX
AC MI0005345;
XX
DE Monodelphis domestica miR-200b stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034282; MIR200B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..23
FT /accession="MIMAT0026700"
FT /product="mdo-miR-200b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 39..60
FT /accession="MIMAT0004156"
FT /product="mdo-miR-200b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001250"
XX
SQ Sequence 68 BP; 13 A; 11 C; 21 G; 0 T; 23 other;
ccaucuuacu gggcagcauu ggaugguguc uguguuucua auacugccug guaaugauga 60
ugaugggg 68
//
ID mdo-mir-200a standard; RNA; MDO; 86 BP.
XX
AC MI0005346;
XX
DE Monodelphis domestica miR-200a stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
DR ENTREZGENE; 100034283; MIR200A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0004157"
FT /product="mdo-miR-200a-5p"
FT /evidence=not_experimental
FT /similarity="MI0001249"
FT miRNA 51..72
FT /accession="MIMAT0004158"
FT /product="mdo-miR-200a-3p"
FT /evidence=not_experimental
FT /similarity="MI0001249"
XX
SQ Sequence 86 BP; 20 A; 16 C; 24 G; 0 T; 26 other;
gggccucugu gggcaucuua cuagacagug cuggauuuuu ggauguacuc uaacacuguc 60
ugguaacgau guuuaaagag ggaacc 86
//
ID mdo-mir-221 standard; RNA; MDO; 74 BP.
XX
AC MI0005348;
XX
DE Monodelphis domestica miR-221 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034285; MIR221.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..32
FT /accession="MIMAT0026701"
FT /product="mdo-miR-221-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 47..69
FT /accession="MIMAT0004160"
FT /product="mdo-miR-221-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0004743"
XX
SQ Sequence 74 BP; 19 A; 13 C; 17 G; 0 T; 25 other;
gcaugaaccu ggcauacaau guagaauucu guguuuauua aguaacagcu acauugucug 60
cuggguuuca ggcu 74
//
ID mdo-let-7f-2 standard; RNA; MDO; 80 BP.
XX
AC MI0005349;
XX
DE Monodelphis domestica let-7f-2 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315605; MIRLET7F-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0004161"
FT /product="mdo-let-7f-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000068"
FT miRNA 55..76
FT /accession="MIMAT0031040"
FT /product="mdo-let-7f-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 80 BP; 20 A; 16 C; 20 G; 0 T; 24 other;
gggaugaggu aguagauugu auaguuuuag ggucacaccc gaucucggag auaacuauac 60
agucuacugu cuuucccacg 80
//
ID mdo-let-7a-3 standard; RNA; MDO; 79 BP.
XX
AC MI0005350;
XX
DE Monodelphis domestica let-7a-3 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
DR ENTREZGENE; 100034286; MIRLET7A-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0004141"
FT /product="mdo-let-7a-5p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1]"
FT /similarity="MI0001860"
XX
SQ Sequence 79 BP; 13 A; 15 C; 24 G; 0 T; 27 other;
ggggugaggu aguagguugu auaguuuggg ggucgcuccc ucugucugug agauaacuau 60
acagucuacu gucuuuccc 79
//
ID mdo-let-7b standard; RNA; MDO; 88 BP.
XX
AC MI0005351;
XX
DE Monodelphis domestica let-7b stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
DR ENTREZGENE; 100034287; MIRLET7B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0004162"
FT /product="mdo-let-7b"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1]"
FT /similarity="MI0001172"
XX
SQ Sequence 88 BP; 20 A; 17 C; 26 G; 0 T; 25 other;
ggcgggguga gguaguaggu ugugugguuu caggguagug auuuugcccc aaucagaaga 60
uaacuauaca accuacugcc uucccuga 88
//
ID mdo-mir-29b-1 standard; RNA; MDO; 86 BP.
XX
AC MI0005352;
XX
DE Monodelphis domestica miR-29b-1 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034288; MIR29B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..37
FT /accession="MIMAT0026703"
FT /product="mdo-miR-29b-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 55..76
FT /accession="MIMAT0004163"
FT /product="mdo-miR-29b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000105"
XX
SQ Sequence 86 BP; 20 A; 13 C; 22 G; 0 T; 31 other;
gcuucuucag gaagcugguu ucauauggug guuuagauuu aacuacugag ugucuagcac 60
cauuugaaau caguguucuu ggagga 86
//
ID mdo-mir-29a-1 standard; RNA; MDO; 64 BP.
XX
AC MI0005353;
XX
DE Monodelphis domestica miR-29a-1 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034289; MIR29A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0026704"
FT /product="mdo-miR-29a-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 42..62
FT /accession="MIMAT0004164"
FT /product="mdo-miR-29a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000087"
XX
SQ Sequence 64 BP; 16 A; 10 C; 11 G; 0 T; 27 other;
augacugauu ucuuuuggug uucagaguca auaucauuuu cuagcaccau uugaaaucgg 60
uuau 64
//
ID mdo-mir-17 standard; RNA; MDO; 85 BP.
XX
AC MI0005354;
XX
DE Monodelphis domestica miR-17 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
DR ENTREZGENE; 100034290; MIR17.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..37
FT /accession="MIMAT0004165"
FT /product="mdo-miR-17-5p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1]"
FT /similarity="MI0000071"
FT miRNA 52..72
FT /accession="MIMAT0004166"
FT /product="mdo-miR-17-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1]"
FT /similarity="MI0000071"
XX
SQ Sequence 85 BP; 27 A; 12 C; 22 G; 0 T; 24 other;
gucagaauaa ugucaaagug cuuacagugc agguagugau auguagaauc uacugcagug 60
aaggcacuug uagcauuaua gugac 85
//
ID mdo-mir-18a standard; RNA; MDO; 72 BP.
XX
AC MI0005355;
XX
DE Monodelphis domestica miR-18a stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034291; MIR18.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0004167"
FT /product="mdo-miR-18a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000072"
FT miRNA 48..71
FT /accession="MIMAT0026705"
FT /product="mdo-miR-18a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 72 BP; 17 A; 15 C; 17 G; 0 T; 23 other;
uuguucuaag gugcaucuag ugcagauagu gaaguagauu agcaucuacu gcccuaagug 60
cuccuucugg ca 72
//
ID mdo-mir-20a standard; RNA; MDO; 102 BP.
XX
AC MI0005357;
XX
DE Monodelphis domestica miR-20a stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034293; MIR20.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0004169"
FT /product="mdo-miR-20a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001181"
FT miRNA 60..82
FT /accession="MIMAT0026707"
FT /product="mdo-miR-20a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 102 BP; 29 A; 16 C; 24 G; 0 T; 33 other;
ugaaaggaca gcuuuuguag cacuaaagug cuuauagugc agguaguguu uaguuaucua 60
cugcauuaug agcacuugaa guacugcuag cuguagaacu ac 102
//
ID mdo-mir-19b-1 standard; RNA; MDO; 89 BP.
XX
AC MI0005358;
XX
DE Monodelphis domestica miR-19b-1 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034294; MIR19B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0026708"
FT /product="mdo-miR-19b-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 55..77
FT /accession="MIMAT0004170"
FT /product="mdo-miR-19b-3p"
FT /evidence=experimental
FT /experiment="PCR [1], Illumina [2]"
FT /similarity="MI0000074"
XX
SQ Sequence 89 BP; 18 A; 16 C; 24 G; 0 T; 31 other;
gcacuguucu augguuaguu uugcagguuu gcauccagcu guaugauauu cugcugugca 60
aauccaugca aaacugacug ugguggugg 89
//
ID mdo-mir-92a-1 standard; RNA; MDO; 78 BP.
XX
AC MI0005359;
XX
DE Monodelphis domestica miR-92a-1 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034295; MIR92.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0026709"
FT /product="mdo-miR-92a-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 48..69
FT /accession="MIMAT0004171"
FT /product="mdo-miR-92a-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0001179"
XX
SQ Sequence 78 BP; 11 A; 16 C; 22 G; 0 T; 29 other;
cuuucuacac agguugggau caguugcaau gcugugucug ucuguaguau ugcacuuguc 60
ccggccuguu gaguuugg 78
//
ID mdo-let-7a-1 standard; RNA; MDO; 92 BP.
XX
AC MI0005360;
XX
DE Monodelphis domestica let-7a-1 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
DR ENTREZGENE; 100034296; MIRLET7A-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0004141"
FT /product="mdo-let-7a-5p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1]"
FT /similarity="MI0000556"
XX
SQ Sequence 92 BP; 24 A; 18 C; 21 G; 0 T; 29 other;
ucuccacugu gggaugaggu aguagguugu auaguuuuag ggucacaccc accacuggga 60
gauaacuaua caaucuacug ucuuucuuaa ag 92
//
ID mdo-let-7d standard; RNA; MDO; 106 BP.
XX
AC MI0005362;
XX
DE Monodelphis domestica let-7d stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
DR ENTREZGENE; 100034298; MIRLET7D.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0004172"
FT /product="mdo-let-7d"
FT /evidence=experimental
FT /experiment="PCR [1]"
FT /similarity="MI0000405"
XX
SQ Sequence 106 BP; 26 A; 19 C; 28 G; 0 T; 33 other;
aaugggcucc uaggaagagg uaguagguug cauaguuuua gggcagggau uuugcccaca 60
aggaguuaac uauacaaccu gcugccuuuc uuagggcucu auuauu 106
//
ID mdo-mir-27a standard; RNA; MDO; 86 BP.
XX
AC MI0005364;
XX
DE Monodelphis domestica miR-27a stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034300; MIR27A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0026711"
FT /product="mdo-miR-27a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 56..76
FT /accession="MIMAT0004174"
FT /product="mdo-miR-27a-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0004746"
XX
SQ Sequence 86 BP; 17 A; 22 C; 23 G; 0 T; 24 other;
uggcuugagg agcaggacuu agcugccuug ugaacagagu cagcaucaua uuguguucac 60
aguggcuaag uuccgcuccc cuugcc 86
//
ID mdo-mir-27b standard; RNA; MDO; 97 BP.
XX
AC MI0005367;
XX
DE Monodelphis domestica miR-27b stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100034303; MIR27B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0026714"
FT /product="mdo-miR-27b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 61..81
FT /accession="MIMAT0004177"
FT /product="mdo-miR-27b-3p"
FT /evidence=experimental
FT /experiment="Microarray [1], PCR [1], Illumina [2]"
FT /similarity="MI0004760"
XX
SQ Sequence 97 BP; 23 A; 22 C; 26 G; 0 T; 26 other;
accucucuga caaggugcag agcuuagccg auuggugaac agucacugau uuccucuuug 60
uucacagugg cuaaguucug caccugaaga gaagggg 97
//
ID bmo-mir-31 standard; RNA; BMO; 121 BP.
XX
AC MI0005377;
XX
DE Bombyx mori miR-31 stem-loop
XX
RN [1]
RX PUBMED; 16972323.
RA Tong CZ, Jin YF, Zhang YZ;
RT "Computational prediction of microRNA genes in silkworm genome";
RL J Zhejiang Univ Sci B. 7:806-816(2006).
XX
RN [2]
RX PUBMED; 18507836.
RA He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X,
RA Jin Y, Zhang Y;
RT "Identification and characteristics of microRNAs from Bombyx mori";
RL BMC Genomics. 9:248(2008).
XX
RN [3]
RX PUBMED; 18714353.
RA Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J;
RT "The silkworm (Bombyx mori) microRNAs and their expressions in multiple
RT developmental stages";
RL PLoS One. 3:e2997(2008).
XX
RN [4]
RX PUBMED; 18977439.
RA Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y;
RT "Identification of conserved microRNAs in Bombyx mori (silkworm) and
RT regulation of fibroin L chain production by microRNAs in heterologous
RT system";
RL Insect Biochem Mol Biol. 38:1066-1071(2008).
XX
RN [5]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0004213"
FT /product="bmo-miR-31-5p"
FT /evidence=experimental
FT /experiment="Northern [2], cloned [3], RT-PCR [4],
FT Illumina [5]"
FT /similarity="MI0004921"
FT miRNA 58..79
FT /accession="MIMAT0015242"
FT /product="bmo-miR-31-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 121 BP; 27 A; 28 C; 35 G; 0 T; 31 other;
gucgagccgg uggcugggaa ggcaagaagu cggcauagcu guuugaauaa gauacacggc 60
ugugucacuu cgagccagcu caauccgccg gcuuucuuca auuucaagau uugcggaugc 120
u 121
//
ID bmo-mir-71 standard; RNA; BMO; 119 BP.
XX
AC MI0005378;
XX
DE Bombyx mori miR-71 stem-loop
XX
RN [1]
RX PUBMED; 16972323.
RA Tong CZ, Jin YF, Zhang YZ;
RT "Computational prediction of microRNA genes in silkworm genome";
RL J Zhejiang Univ Sci B. 7:806-816(2006).
XX
RN [2]
RX PUBMED; 18507836.
RA He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X,
RA Jin Y, Zhang Y;
RT "Identification and characteristics of microRNAs from Bombyx mori";
RL BMC Genomics. 9:248(2008).
XX
RN [3]
RX PUBMED; 18714353.
RA Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J;
RT "The silkworm (Bombyx mori) microRNAs and their expressions in multiple
RT developmental stages";
RL PLoS One. 3:e2997(2008).
XX
RN [4]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..39
FT /accession="MIMAT0004214"
FT /product="bmo-miR-71-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4]"
FT /similarity="MI0000042"
FT miRNA 60..81
FT /accession="MIMAT0015243"
FT /product="bmo-miR-71-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 119 BP; 30 A; 28 C; 25 G; 0 T; 36 other;
gcaagaugcu cucuaccucu ugaaagacau ggguagugag augucccgua caucuaaaau 60
ucucacuacc uugucuuuca ugcggauugg gcaaauaucu ucacucggcu ucggaagau 119
//
ID hsa-mir-675 standard; RNA; HSA; 73 BP.
XX
AC MI0005416;
XX
DE Homo sapiens miR-675 stem-loop
XX
RN [1]
RX PUBMED; 17237358.
RA Cai X, Cullen BR;
RT "The imprinted H19 noncoding RNA is a primary microRNA precursor";
RL RNA. 13:313-316(2007).
XX
RN [2]
RX PUBMED; 18402656.
RA Kawaji H, Nakamura M, Takahashi Y, Sandelin A, Katayama S, Fukuda S, Daub
RA CO, Kai C, Kawai J, Yasuda J, Carninci P, Hayashizaki Y;
RT "Hidden layers of human small RNAs";
RL BMC Genomics. 9:157(2008).
XX
DR HGNC; 33351; MIR675.
DR ENTREZGENE; 100033819; MIR675.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..32
FT /accession="MIMAT0004284"
FT /product="hsa-miR-675-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 45..64
FT /accession="MIMAT0006790"
FT /product="hsa-miR-675-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 73 BP; 10 A; 24 C; 26 G; 0 T; 13 other;
cccagggucu ggugcggaga gggcccacag uggacuuggu gacgcuguau gcccucaccg 60
cucagccccu ggg 73
//
ID mmu-mir-181d standard; RNA; MMU; 72 BP.
XX
AC MI0005450;
XX
DE Mus musculus miR-181d stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3709847; Mir181d.
DR ENTREZGENE; 100049549; Mir181d.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0004324"
FT /product="mmu-miR-181d-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 48..68
FT /accession="MIMAT0017264"
FT /product="mmu-miR-181d-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 72 BP; 17 A; 14 C; 23 G; 0 T; 18 other;
acaauuaaca uucauuguug ucgguggguu gugaggaggc agccagaccc accgggggau 60
gaaugucacu gu 72
//
ID bta-let-7a-3 standard; RNA; BTA; 74 BP.
XX
AC MI0005452;
XX
DE Bos taurus let-7a-3 stem-loop
XX
RN [1]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
DR ENTREZGENE; 100170921; MIRLET7A-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0003844"
FT /product="bta-let-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 52..72
FT /accession="MIMAT0004330"
FT /product="bta-let-7a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 74 BP; 14 A; 13 C; 21 G; 0 T; 26 other;
gggugaggua guagguugua uaguuugggg cucugcccug cuaugggaua acuauacaau 60
cuacugucuu uccu 74
//
ID bta-let-7b standard; RNA; BTA; 81 BP.
XX
AC MI0005453;
XX
DE Bos taurus let-7b stem-loop
XX
RN [1]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
RN [2]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100170922; MIRLET7B.
XX
CC The 3' end of the bovine let-7b hairpin precursor falls in a gap in the
CC genome assembly. The sequence shown here is predicted from human.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0004331"
FT /product="bta-let-7b"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 16 A; 17 C; 25 G; 0 T; 23 other;
cggggugagg uaguagguug ugugguuuca ggguagugau guugcccccu cggaagauaa 60
cuauacaacc uacugccuuc c 81
//
ID bta-let-7c standard; RNA; BTA; 84 BP.
XX
AC MI0005454;
XX
DE Bos taurus let-7c stem-loop
XX
RN [1]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
DR ENTREZGENE; 100170919; MIRLET7C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004332"
FT /product="bta-let-7c"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 84 BP; 17 A; 16 C; 24 G; 0 T; 27 other;
gcauccgggu ugagguagua gguuguaugg uuuagaguua cacccuggga guuaacugua 60
caaccuucua gcuuuccuug gagc 84
//
ID bta-let-7e standard; RNA; BTA; 79 BP.
XX
AC MI0005455;
XX
DE Bos taurus let-7e stem-loop
XX
RN [1]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
DR ENTREZGENE; 100170931; MIRLET7E.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..28
FT /accession="MIMAT0004333"
FT /product="bta-let-7e"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 79 BP; 18 A; 20 C; 25 G; 0 T; 16 other;
cccgggcuga gguaggaggu uguauaguug aggaggacac ccaaggagau cacuauacgg 60
ccuccuagcu uuccccagg 79
//
ID bta-mir-125b-2 standard; RNA; BTA; 85 BP.
XX
AC MI0005457;
XX
DE Bos taurus miR-125b-2 stem-loop
XX
RN [1]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
RN [2]
RX PUBMED; 19267191.
RA Long JE, Chen HX;
RT "Identification and characteristics of cattle microRNAs by homology
RT searching and small RNA cloning";
RL Biochem Genet. 47:329-343(2009).
XX
DR ENTREZGENE; 100170920; MIR125B-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0003539"
FT /product="bta-miR-125b"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 85 BP; 19 A; 19 C; 24 G; 0 T; 23 other;
gacuuuuccu agucccugag acccuaacuu gugagguauu uuaguagcau cacaagucag 60
gcucuuggga ccuaggcgga gggga 85
//
ID bta-mir-195 standard; RNA; BTA; 87 BP.
XX
AC MI0005459;
XX
DE Bos taurus miR-195 stem-loop
XX
RN [1]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
DR ENTREZGENE; 100170933; MIR195.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0004335"
FT /product="bta-miR-195"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 87 BP; 20 A; 22 C; 27 G; 0 T; 18 other;
agcuccccug gcucuagcag cacagaaaua uuggcacugg gaagaaagcc ugccaauauu 60
ggcugugcug cuccaggcag gguggug 87
//
ID bta-mir-19a standard; RNA; BTA; 82 BP.
XX
AC MI0005460;
XX
DE Bos taurus miR-19a stem-loop
XX
RN [1]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
DR ENTREZGENE; 100170926; MIR19A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..71
FT /accession="MIMAT0004336"
FT /product="bta-miR-19a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 82 BP; 22 A; 15 C; 20 G; 0 T; 25 other;
gcaguccucu guuaguuuug cauaguugca cuacaagaag aauguaguug ugcaaaucua 60
ugcaaaacug augguggccu gc 82
//
ID bta-mir-19b standard; RNA; BTA; 87 BP.
XX
AC MI0005461;
XX
DE Bos taurus miR-19b stem-loop
XX
RN [1]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
RN [2]
RX PUBMED; 19267191.
RA Long JE, Chen HX;
RT "Identification and characteristics of cattle microRNAs by homology
RT searching and small RNA cloning";
RL Biochem Genet. 47:329-343(2009).
XX
DR ENTREZGENE; 100170927; MIR19B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..76
FT /accession="MIMAT0004337"
FT /product="bta-miR-19b"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 87 BP; 18 A; 16 C; 22 G; 0 T; 31 other;
cacuguucua ugguuaguuu ugcagguuug cauccagcug ugugauauuc ugcugugcaa 60
auccaugcaa aacugacugu gguagug 87
//
ID bta-mir-331 standard; RNA; BTA; 90 BP.
XX
AC MI0005463;
XX
DE Bos taurus miR-331 stem-loop
XX
RN [1]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
RN [2]
RX PUBMED; 23100578.
RA Muroya S, Taniguchi M, Shibata M, Oe M, Ojima K, Nakajima I, Chikuni K;
RT "Profiling of differentially expressed microRNA and the bioinformatic
RT target gene analyses in bovine fast- and slow-type muscles by massively
RT parallel sequencing";
RL J Anim Sci. 91:90-103(2013).
XX
DR ENTREZGENE; 100170923; MIR331.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..42
FT /accession="MIMAT0026716"
FT /product="bta-miR-331-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 61..81
FT /accession="MIMAT0004339"
FT /product="bta-miR-331-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
XX
SQ Sequence 90 BP; 19 A; 22 C; 23 G; 0 T; 26 other;
gaguuugguu uuguuugggu uuguucuagg uaugguccca gggaucccag aucaaaccag 60
gccccugggc cuauccuaga accaaccuaa 90
//
ID bta-mir-365-1 standard; RNA; BTA; 87 BP.
XX
AC MI0005465;
XX
DE Bos taurus miR-365 stem-loop
XX
RN [1]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
RN [2]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
RN [3]
RX PUBMED; 19633723.
RA Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ;
RT "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed
RT upon viral infection";
RL PLoS One. 4:e6349(2009).
XX
DR ENTREZGENE; 100170935; MIR365.
XX
CC High-throughput sequencing suggests that the dominant miRNA arises from
CC the 5' arm of this precursor [3], in contrast to earlier studies.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0012539"
FT /product="bta-miR-365-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 56..77
FT /accession="MIMAT0004341"
FT /product="bta-miR-365-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Array [2], qRT-PCR [2], Illumina
FT [3]"
XX
SQ Sequence 87 BP; 23 A; 19 C; 20 G; 0 T; 25 other;
accgcaggga aaaugaggga cuuuuggggg cagauguguu ugcauuccac uaucauaaug 60
ccccuaaaaa uccuuauugc ucuugca 87
//
ID bta-mir-374a standard; RNA; BTA; 72 BP.
XX
AC MI0005466;
XX
DE Bos taurus miR-374a stem-loop
XX
RN [1]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
DR ENTREZGENE; 100170936; MIR374A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0004342"
FT /product="bta-miR-374a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 72 BP; 21 A; 12 C; 13 G; 0 T; 26 other;
uacaucggcc auuauaauac aaccugauaa guguuacagc acuuaucagg uuguauugua 60
auugucugug ua 72
//
ID bta-mir-99b standard; RNA; BTA; 70 BP.
XX
AC MI0005469;
XX
DE Bos taurus miR-99b stem-loop
XX
RN [1]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
DR ENTREZGENE; 100170932; MIR99B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0004345"
FT /product="bta-miR-99b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 70 BP; 10 A; 26 C; 21 G; 0 T; 13 other;
ggcacccacc cguagaaccg accuugcggg gccuucgccg cacacaagcu cgugucugug 60
gguccguguc 70
//
ID mmu-mir-743b standard; RNA; MMU; 77 BP.
XX
AC MI0005470;
XX
DE Mus musculus miR-743b stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718560; Mir743b.
DR ENTREZGENE; 100124496; Mir743b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0004839"
FT /product="mmu-miR-743b-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT miRNA 46..67
FT /accession="MIMAT0004840"
FT /product="mmu-miR-743b-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
XX
SQ Sequence 77 BP; 22 A; 13 C; 20 G; 0 T; 22 other;
ugcagugcug uguucagacu gguguccauc augugaaaua uuugugaaag acaucaugcu 60
gaauagagua aggccca 77
//
ID mmu-mir-871 standard; RNA; MMU; 77 BP.
XX
AC MI0005471;
XX
DE Mus musculus miR-871 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 17989215.
RA Calabrese JM, Seila AC, Yeo GW, Sharp PA;
RT "RNA sequence analysis defines Dicer's role in mouse embryonic stem
RT cells";
RL Proc Natl Acad Sci U S A. 104:18097-18102(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718561; Mir871.
DR ENTREZGENE; 100124478; Mir871.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0004841"
FT /product="mmu-miR-871-5p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2], Illumina [3-4]"
FT miRNA 45..67
FT /accession="MIMAT0017265"
FT /product="mmu-miR-871-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 77 BP; 22 A; 15 C; 16 G; 0 T; 24 other;
ugcagugcuc uauucagauu agugccaguc augugaaaua cauaugacug gcaccauucu 60
ggauaaugua augcuca 77
//
ID mmu-mir-879 standard; RNA; MMU; 76 BP.
XX
AC MI0005472;
XX
DE Mus musculus miR-879 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718570; Mir879.
DR ENTREZGENE; 100124492; Mir879.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0004842"
FT /product="mmu-miR-879-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT miRNA 45..66
FT /accession="MIMAT0004843"
FT /product="mmu-miR-879-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
XX
SQ Sequence 76 BP; 18 A; 15 C; 22 G; 0 T; 21 other;
uucuaggucc agaggcuuau agcucuaagc cuuggaugaa agaggcuuau ggcuucaagc 60
uuucggagcu ggagac 76
//
ID mmu-mir-880 standard; RNA; MMU; 78 BP.
XX
AC MI0005473;
XX
DE Mus musculus miR-880 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 17989215.
RA Calabrese JM, Seila AC, Yeo GW, Sharp PA;
RT "RNA sequence analysis defines Dicer's role in mouse embryonic stem
RT cells";
RL Proc Natl Acad Sci U S A. 104:18097-18102(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718571; Mir880.
DR ENTREZGENE; 100124480; Mir880.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0017266"
FT /product="mmu-miR-880-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 47..68
FT /accession="MIMAT0004844"
FT /product="mmu-miR-880-3p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2], Illumina [3-4]"
XX
SQ Sequence 78 BP; 21 A; 19 C; 14 G; 0 T; 24 other;
ugcacugcaa uacucagauu gauaugaguc acuuccuauu gcauguuacu ccauccucuc 60
ugaguagagu aaggcaca 78
//
ID mmu-mir-881 standard; RNA; MMU; 78 BP.
XX
AC MI0005474;
XX
DE Mus musculus miR-881 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 17989215.
RA Calabrese JM, Seila AC, Yeo GW, Sharp PA;
RT "RNA sequence analysis defines Dicer's role in mouse embryonic stem
RT cells";
RL Proc Natl Acad Sci U S A. 104:18097-18102(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718572; Mir881.
DR ENTREZGENE; 100124460; Mir881.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0004845"
FT /product="mmu-miR-881-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3-4]"
FT miRNA 47..68
FT /accession="MIMAT0004846"
FT /product="mmu-miR-881-3p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2], Illumina [3-4]"
XX
SQ Sequence 78 BP; 26 A; 12 C; 13 G; 0 T; 27 other;
ugcaguacaa uauucagaga gauaacaguc acaucuuuuc uaaaguaacu gugucuuuuc 60
ugaauagagu aauguuca 78
//
ID mmu-mir-883a standard; RNA; MMU; 76 BP.
XX
AC MI0005476;
XX
DE Mus musculus miR-883a stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 17989215.
RA Calabrese JM, Seila AC, Yeo GW, Sharp PA;
RT "RNA sequence analysis defines Dicer's role in mouse embryonic stem
RT cells";
RL Proc Natl Acad Sci U S A. 104:18097-18102(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718574; Mir883a.
DR ENTREZGENE; 100124462; Mir883a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0004848"
FT /product="mmu-miR-883a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3-4]"
FT miRNA 45..66
FT /accession="MIMAT0004849"
FT /product="mmu-miR-883a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2], Illumina [3-4]"
XX
SQ Sequence 76 BP; 24 A; 14 C; 15 G; 0 T; 23 other;
gcacuauaau gcugagagaa guagcaguua cuuuauucua uaaguaacug caacagcucu 60
caguauugua aggcuc 76
//
ID mmu-mir-883b standard; RNA; MMU; 78 BP.
XX
AC MI0005477;
XX
DE Mus musculus miR-883b stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 17989215.
RA Calabrese JM, Seila AC, Yeo GW, Sharp PA;
RT "RNA sequence analysis defines Dicer's role in mouse embryonic stem
RT cells";
RL Proc Natl Acad Sci U S A. 104:18097-18102(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718576; Mir883b.
DR ENTREZGENE; 100124493; Mir883b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004850"
FT /product="mmu-miR-883b-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3-4]"
FT miRNA 47..68
FT /accession="MIMAT0004851"
FT /product="mmu-miR-883b-3p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2], Illumina [3-4]"
XX
SQ Sequence 78 BP; 22 A; 14 C; 17 G; 0 T; 25 other;
ugcaaugcau uacugagaau ggguagcagu cacuuuguac uaugaguaac ugcaacaucu 60
cucaguauug uaagguuc 78
//
ID mmu-mir-190b standard; RNA; MMU; 80 BP.
XX
AC MI0005478;
XX
DE Mus musculus miR-190b stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718457; Mir190b.
DR ENTREZGENE; 100124481; Mir190b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004852"
FT /product="mmu-miR-190b-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT miRNA 48..70
FT /accession="MIMAT0017267"
FT /product="mmu-miR-190b-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 80 BP; 23 A; 12 C; 17 G; 0 T; 28 other;
ugcuucugug ugauauguuu gauauugggu uguuaaauua ugaaccaacu gaaugucaag 60
cauacucuca cagcaguaag 80
//
ID mmu-mir-874 standard; RNA; MMU; 76 BP.
XX
AC MI0005479;
XX
DE Mus musculus miR-874 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718564; Mir874.
DR ENTREZGENE; 100124491; Mir874.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0017268"
FT /product="mmu-miR-874-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 45..66
FT /accession="MIMAT0004853"
FT /product="mmu-miR-874-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
XX
SQ Sequence 76 BP; 13 A; 28 C; 24 G; 0 T; 11 other;
uuagcccugc ggccccacgc accaggguaa gagagacuca cuuccugccc uggcccgagg 60
gaccgacugg cugggc 76
//
ID mmu-mir-147 standard; RNA; MMU; 79 BP.
XX
AC MI0005482;
XX
DE Mus musculus miR-147 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676832; Mir147.
DR ENTREZGENE; 387165; Mir147.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..35
FT /accession="MIMAT0017269"
FT /product="mmu-miR-147-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 48..69
FT /accession="MIMAT0004857"
FT /product="mmu-miR-147-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
XX
SQ Sequence 79 BP; 22 A; 13 C; 19 G; 0 T; 25 other;
uaugaaucua guggaaacau uucugcacaa acuagauguu gaugccagug ugcggaaaug 60
cuucugcuac auuuguagg 79
//
ID mmu-mir-18b standard; RNA; MMU; 83 BP.
XX
AC MI0005483;
XX
DE Mus musculus miR-18b stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718454; Mir18b.
DR ENTREZGENE; 100124431; Mir18b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0004858"
FT /product="mmu-miR-18b-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
FT miRNA 51..72
FT /accession="MIMAT0017270"
FT /product="mmu-miR-18b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 83 BP; 18 A; 22 C; 17 G; 0 T; 26 other;
ucucuugugu uaaggugcau cuagugcugu uagugaagca gcuuacaauc uacugcccua 60
aaugccccuu cucgcacagg cua 83
//
ID mmu-mir-193b standard; RNA; MMU; 79 BP.
XX
AC MI0005484;
XX
DE Mus musculus miR-193b stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718458; Mir193b.
DR ENTREZGENE; 100124432; Mir193b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0017271"
FT /product="mmu-miR-193b-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 48..69
FT /accession="MIMAT0004859"
FT /product="mmu-miR-193b-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
XX
SQ Sequence 79 BP; 15 A; 17 C; 25 G; 0 T; 22 other;
ggcccagaau cgggguuuug agggcgagau gaguuugugu uuuauccaac uggcccacaa 60
agucccgcuu uugggguca 79
//
ID mmu-mir-297a-3 standard; RNA; MMU; 102 BP.
XX
AC MI0005488;
XX
DE Mus musculus miR-297a-3 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718465; Mir297a-3.
DR ENTREZGENE; 100124482; Mir297a-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0000375"
FT /product="mmu-miR-297a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT miRNA 50..71
FT /accession="MIMAT0004864"
FT /product="mmu-miR-297a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
XX
SQ Sequence 102 BP; 39 A; 19 C; 16 G; 0 T; 28 other;
cuguguguau auguaugugu gcaugugcau guguguauau gaauauacau auacauacac 60
acauacccau acaaacaugc acacaaacac acagaaaauu ga 102
//
ID mmu-mir-297a-4 standard; RNA; MMU; 98 BP.
XX
AC MI0005489;
XX
DE Mus musculus miR-297a-4 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718466; Mir297a-4.
DR ENTREZGENE; 100124435; Mir297a-4.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0000375"
FT /product="mmu-miR-297a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT miRNA 50..71
FT /accession="MIMAT0004864"
FT /product="mmu-miR-297a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
XX
SQ Sequence 98 BP; 35 A; 19 C; 17 G; 0 T; 27 other;
cuguguguau auguaugugu gcaugugcau guguguauau gaguauacau auacauacac 60
acauacccau acaagcaugc acacaaauac acgcaaaa 98
//
ID mmu-mir-297c standard; RNA; MMU; 98 BP.
XX
AC MI0005492;
XX
DE Mus musculus miR-297c stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718506; Mir297c.
DR ENTREZGENE; 100124483; Mir297c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004865"
FT /product="mmu-miR-297c-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT miRNA 50..71
FT /accession="MIMAT0004866"
FT /product="mmu-miR-297c-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
XX
SQ Sequence 98 BP; 39 A; 18 C; 13 G; 0 T; 28 other;
cuguguguau auguaugugu gcauguacau guguguauau gaauauacau auacauacac 60
acauacccau acaaacaugc auacaaacac acaaaaau 98
//
ID mmu-mir-421 standard; RNA; MMU; 76 BP.
XX
AC MI0005496;
XX
DE Mus musculus miR-421 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718516; Mir421.
DR ENTREZGENE; 100124494; Mir421.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0017273"
FT /product="mmu-miR-421-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 45..67
FT /accession="MIMAT0004869"
FT /product="mmu-miR-421-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
XX
SQ Sequence 76 BP; 24 A; 13 C; 15 G; 0 T; 24 other;
cauuguaggc cucauuaaau guuuguugaa ugaaaaaaug aaucaucaac agacauuaau 60
ugggcgccug cucugu 76
//
ID mmu-mir-465b-1 standard; RNA; MMU; 79 BP.
XX
AC MI0005498;
XX
DE Mus musculus miR-465b-1 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718520; Mirn465b-1.
DR ENTREZGENE; 100124473; Mir465b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004871"
FT /product="mmu-miR-465b-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT miRNA 48..69
FT /accession="MIMAT0004872"
FT /product="mmu-miR-465b-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
XX
SQ Sequence 79 BP; 26 A; 11 C; 18 G; 0 T; 24 other;
ugcaaugccc uauuuagaau ggugcugauc ugaugaaaua aaaaauugau cagggccuuu 60
cuaaguagag uaaggcuua 79
//
ID mmu-mir-465b-2 standard; RNA; MMU; 79 BP.
XX
AC MI0005499;
XX
DE Mus musculus miR-465b-2 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718521; Mir465b-2.
DR ENTREZGENE; 100124440; Mir465b-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004871"
FT /product="mmu-miR-465b-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT miRNA 48..69
FT /accession="MIMAT0004872"
FT /product="mmu-miR-465b-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
XX
SQ Sequence 79 BP; 26 A; 11 C; 18 G; 0 T; 24 other;
ugcaaugccc uauuuagaau ggugcugauc ugaugaaaua aaaaauugau cagggccuuu 60
cuaaguagag uaaggcuua 79
//
ID mmu-mir-465c-1 standard; RNA; MMU; 81 BP.
XX
AC MI0005500;
XX
DE Mus musculus miR-465c-1 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718524; Mir465c-1.
DR ENTREZGENE; 100124441; Mir465c-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004873"
FT /product="mmu-miR-465c-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT miRNA 50..71
FT /accession="MIMAT0004874"
FT /product="mmu-miR-465c-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
XX
SQ Sequence 81 BP; 29 A; 12 C; 18 G; 0 T; 22 other;
ugcaaugccc uauuuagaau ggcgcugauc ugaugaauaa aaaaaaaaug aucagggccu 60
uucuaaguag aguaaggcuu a 81
//
ID mmu-mir-465c-2 standard; RNA; MMU; 81 BP.
XX
AC MI0005501;
XX
DE Mus musculus miR-465c-2 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718525; Mir465c-2.
DR ENTREZGENE; 100124464; Mir465c-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004873"
FT /product="mmu-miR-465c-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT miRNA 50..71
FT /accession="MIMAT0004874"
FT /product="mmu-miR-465c-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
XX
SQ Sequence 81 BP; 29 A; 12 C; 18 G; 0 T; 22 other;
ugcaaugccc uauuuagaau ggcgcugauc ugaugaauaa aaaaaaaaug aucagggccu 60
uucuaaguag aguaaggcuu a 81
//
ID mmu-mir-467c standard; RNA; MMU; 97 BP.
XX
AC MI0005512;
XX
DE Mus musculus miR-467c stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718539; Mir467c.
DR ENTREZGENE; 100124487; Mir467c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004885"
FT /product="mmu-miR-467c-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT miRNA 47..68
FT /accession="MIMAT0017275"
FT /product="mmu-miR-467c-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 97 BP; 30 A; 21 C; 18 G; 0 T; 28 other;
ccuuugugca uaagugcgug cauguauaug uguguauauu uuaugcauau acauacacac 60
accuauacac acaugcacac agacaugcga gaauggc 97
//
ID mmu-mir-467d standard; RNA; MMU; 85 BP.
XX
AC MI0005513;
XX
DE Mus musculus miR-467d stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718540; Mir467d.
DR ENTREZGENE; 100124447; Mir467d.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004886"
FT /product="mmu-miR-467d-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT miRNA 47..68
FT /accession="MIMAT0004887"
FT /product="mmu-miR-467d-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
XX
SQ Sequence 85 BP; 27 A; 22 C; 14 G; 0 T; 22 other;
ccugugugca uaagugcgcg cauguauaug cguguauauu uuaugcauau acauacacac 60
accuacacac acaugcacac agaca 85
//
ID mmu-mir-493 standard; RNA; MMU; 83 BP.
XX
AC MI0005514;
XX
DE Mus musculus miR-493 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718542; Mir493.
DR ENTREZGENE; 100124466; Mir493.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..29
FT /accession="MIMAT0017276"
FT /product="mmu-miR-493-5p"
FT /evidence=experimental
FT /experiment="454 [3], Illumina [4]"
FT miRNA 51..73
FT /accession="MIMAT0004888"
FT /product="mmu-miR-493-3p"
FT /evidence=experimental
FT /experiment="Illumina [2,4]"
FT /similarity="MI0003132"
XX
SQ Sequence 83 BP; 13 A; 22 C; 22 G; 0 T; 26 other;
cgccagggcc uuguacaugg uaggcuuuca uucauuuuuu gcacauucgg ugaagguccu 60
acugugugcc aggcccugug cca 83
//
ID mmu-mir-504 standard; RNA; MMU; 79 BP.
XX
AC MI0005515;
XX
DE Mus musculus miR-504 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718543; Mir504.
DR ENTREZGENE; 100124476; Mir504.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004889"
FT /product="mmu-miR-504-5p"
FT /evidence=experimental
FT /experiment="Illumina [2-3]"
FT /similarity="MI0003189"
FT miRNA 47..68
FT /accession="MIMAT0017277"
FT /product="mmu-miR-504-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 79 BP; 18 A; 18 C; 24 G; 0 T; 19 other;
uccuguuggg agacccuggu cugcacucua ucuguaaacu uacugaaggg agagcagggc 60
aggguuuccc auacagagg 79
//
ID mmu-mir-574 standard; RNA; MMU; 78 BP.
XX
AC MI0005518;
XX
DE Mus musculus miR-574 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
DR MGI; 3718549; Mir574.
DR ENTREZGENE; 100124451; Mir574.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0004893"
FT /product="mmu-miR-574-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
FT miRNA 47..68
FT /accession="MIMAT0004894"
FT /product="mmu-miR-574-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
XX
SQ Sequence 78 BP; 12 A; 24 C; 25 G; 0 T; 17 other;
ugcgggcgug ugagugugug ugugugagug ugugucgcuc caaguccacg cucaugcaca 60
cacccacacg cccgcacg 78
//
ID mmu-mir-590 standard; RNA; MMU; 81 BP.
XX
AC MI0005519;
XX
DE Mus musculus miR-590 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR MGI; 3718552; Mir590.
DR ENTREZGENE; 100124477; Mir590.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004895"
FT /product="mmu-miR-590-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 51..71
FT /accession="MIMAT0004896"
FT /product="mmu-miR-590-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 81 BP; 27 A; 9 C; 17 G; 0 T; 28 other;
agucagaaau gagcuuauuc auaaaagugc aguaugguga agucaaucug uaauuuuaug 60
uauaagcuag ucucugauug a 81
//
ID mmu-mir-654 standard; RNA; MMU; 84 BP.
XX
AC MI0005520;
XX
DE Mus musculus miR-654 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
DR MGI; 3718556; Mir654.
DR ENTREZGENE; 100124453; Mir654.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0004897"
FT /product="mmu-miR-654-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003676"
FT miRNA 53..74
FT /accession="MIMAT0004898"
FT /product="mmu-miR-654-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003676"
XX
SQ Sequence 84 BP; 17 A; 17 C; 23 G; 0 T; 27 other;
cucgguaagu gggaagaugg uaagcugcag aacaugugug uuucucaugu cauaugucug 60
cugaccauca ccuuuggguc ucug 84
//
ID mmu-mir-92b standard; RNA; MMU; 83 BP.
XX
AC MI0005521;
XX
DE Mus musculus miR-92b stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718577; Mir92b.
DR ENTREZGENE; 100124470; Mir92b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..34
FT /accession="MIMAT0017278"
FT /product="mmu-miR-92b-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 52..73
FT /accession="MIMAT0004899"
FT /product="mmu-miR-92b-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
XX
SQ Sequence 83 BP; 8 A; 27 C; 29 G; 0 T; 19 other;
ggugggcggg agggacggga cguggugcag uguuguucuu uccccugcca auauugcacu 60
cgucccggcc uccggccccc ucg 83
//
ID hsa-mir-509-2 standard; RNA; HSA; 91 BP.
XX
AC MI0005530;
XX
DE Homo sapiens miR-509-2 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17573847.
RA Novotny GW, Nielsen JE, Sonne SB, Skakkebaek NE, Rajpert-De Meyts E,
RA Leffers H;
RT "Analysis of gene expression in normal and neoplastic human testis: new
RT roles of RNA";
RL Int J Androl. 30:316-326(2007).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 33641; MIR509-2.
DR ENTREZGENE; 100126301; MIR509-2.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The cloned miR-509-5p sequence from
CC [3] includes a 1 nt extension at the 3' end (A), which is incompatible
CC with the genome sequence.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..40
FT /accession="MIMAT0004779"
FT /product="hsa-miR-509-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 55..76
FT /accession="MIMAT0002881"
FT /product="hsa-miR-509-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2-3]"
XX
SQ Sequence 91 BP; 25 A; 16 C; 24 G; 0 T; 26 other;
caugcugugu gugguacccu acugcagaca guggcaauca uguauaauua aaaaugauug 60
guacgucugu ggguagagua cugcaugaca c 91
//
ID hsa-mir-450b standard; RNA; HSA; 78 BP.
XX
AC MI0005531;
XX
DE Homo sapiens miR-450b stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 33642; MIR450B.
DR ENTREZGENE; 100126302; MIR450B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004909"
FT /product="hsa-miR-450b-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 48..69
FT /accession="MIMAT0004910"
FT /product="hsa-miR-450b-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 78 BP; 22 A; 8 C; 14 G; 0 T; 34 other;
gcagaauuau uuuugcaaua uguuccugaa uauguaauau aaguguauug ggaucauuuu 60
gcauccauag uuuuguau 78
//
ID hsa-mir-874 standard; RNA; HSA; 78 BP.
XX
AC MI0005532;
XX
DE Homo sapiens miR-874 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 33643; MIR874.
DR ENTREZGENE; 100126343; MIR874.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..32
FT /accession="MIMAT0026718"
FT /product="hsa-miR-874-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 47..68
FT /accession="MIMAT0004911"
FT /product="hsa-miR-874-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3]"
XX
SQ Sequence 78 BP; 12 A; 29 C; 25 G; 0 T; 12 other;
uuagcccugc ggccccacgc accaggguaa gagagacucu cgcuuccugc ccuggcccga 60
gggaccgacu ggcugggc 78
//
ID hsa-mir-888 standard; RNA; HSA; 77 BP.
XX
AC MI0005537;
XX
DE Homo sapiens miR-888 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 33648; MIR888.
DR ENTREZGENE; 100126306; MIR888.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0004916"
FT /product="hsa-miR-888-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 46..67
FT /accession="MIMAT0004917"
FT /product="hsa-miR-888-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 77 BP; 21 A; 17 C; 19 G; 0 T; 20 other;
ggcagugcuc uacucaaaaa gcugucaguc acuuagauua caugugacug acaccucuuu 60
gggugaagga aggcuca 77
//
ID hsa-mir-541 standard; RNA; HSA; 84 BP.
XX
AC MI0005539;
XX
DE Homo sapiens miR-541 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 33650; MIR541.
DR ENTREZGENE; 100126308; MIR541.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..34
FT /accession="MIMAT0004919"
FT /product="hsa-miR-541-5p"
FT /evidence=not_experimental
FT miRNA 54..75
FT /accession="MIMAT0004920"
FT /product="hsa-miR-541-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 84 BP; 19 A; 19 C; 26 G; 0 T; 20 other;
acgucaggga aaggauucug cugucggucc cacuccaaag uucacagaau gggugguggg 60
cacagaaucu ggacucugcu ugug 84
//
ID hsa-mir-889 standard; RNA; HSA; 79 BP.
XX
AC MI0005540;
XX
DE Homo sapiens miR-889 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 33651; MIR889.
DR ENTREZGENE; 100126345; MIR889.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0026719"
FT /product="hsa-miR-889-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 49..69
FT /accession="MIMAT0004921"
FT /product="hsa-miR-889-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
XX
SQ Sequence 79 BP; 21 A; 12 C; 16 G; 0 T; 30 other;
gugcuuaaag aauggcuguc cguaguaugg ucucuauauu uaugaugauu aauaucggac 60
aaccauuguu uuaguaucc 79
//
ID hsa-mir-876 standard; RNA; HSA; 81 BP.
XX
AC MI0005542;
XX
DE Homo sapiens miR-876 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 33653; MIR876.
DR ENTREZGENE; 100126310; MIR876.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004924"
FT /product="hsa-miR-876-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 50..71
FT /accession="MIMAT0004925"
FT /product="hsa-miR-876-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 81 BP; 21 A; 11 C; 19 G; 0 T; 30 other;
ugaagugcug uggauuucuu ugugaaucac cauaucuaag cuaauguggu ggugguuuac 60
aaaguaauuc auagugcuuc a 81
//
ID hsa-mir-708 standard; RNA; HSA; 88 BP.
XX
AC MI0005543;
XX
DE Homo sapiens miR-708 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 33654; MIR708.
DR ENTREZGENE; 100126333; MIR708.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0004926"
FT /product="hsa-miR-708-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT miRNA 57..78
FT /accession="MIMAT0004927"
FT /product="hsa-miR-708-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 88 BP; 27 A; 19 C; 24 G; 0 T; 18 other;
aacugcccuc aaggagcuua caaucuagcu ggggguaaau gacuugcaca ugaacacaac 60
uagacuguga gcuucuagag ggcaggga 88
//
ID hsa-mir-147b standard; RNA; HSA; 80 BP.
XX
AC MI0005544;
XX
DE Homo sapiens miR-147b stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 33655; MIR147B.
DR ENTREZGENE; 100126311; MIR147B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0037331"
FT /product="hsa-miR-147b-5p"
FT /evidence=not_experimental
FT miRNA 49..69
FT /accession="MIMAT0004928"
FT /product="hsa-miR-147b-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 80 BP; 24 A; 15 C; 16 G; 0 T; 25 other;
uauaaaucua guggaaacau uucugcacaa acuagauucu ggacaccagu gugcggaaau 60
gcuucugcua cauuuuuagg 80
//
ID mmu-mir-466d standard; RNA; MMU; 96 BP.
XX
AC MI0005546;
XX
DE Mus musculus miR-466d stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 17989215.
RA Calabrese JM, Seila AC, Yeo GW, Sharp PA;
RT "RNA sequence analysis defines Dicer's role in mouse embryonic stem
RT cells";
RL Proc Natl Acad Sci U S A. 104:18097-18102(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718531; Mir466d.
DR ENTREZGENE; 100124465; Mir466d.
XX
CC miR-466d-3p reported in [1] has an additional 3' U base which is
CC inconsistent with the current genome sequence (as shown here).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004930"
FT /product="mmu-miR-466d-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3-4]"
FT miRNA 51..71
FT /accession="MIMAT0004931"
FT /product="mmu-miR-466d-3p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2], Illumina [3-4]"
XX
SQ Sequence 96 BP; 31 A; 21 C; 19 G; 0 T; 25 other;
cauguguguu ugugugugcg uacauguaca uguguguaua ugaauauaca uauacauaca 60
cgcacacaua gauacgcacg cacacacaca cacagg 96
//
ID mmu-mir-878 standard; RNA; MMU; 78 BP.
XX
AC MI0005548;
XX
DE Mus musculus miR-878 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17989215.
RA Calabrese JM, Seila AC, Yeo GW, Sharp PA;
RT "RNA sequence analysis defines Dicer's role in mouse embryonic stem
RT cells";
RL Proc Natl Acad Sci U S A. 104:18097-18102(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718569; Mir878.
DR ENTREZGENE; 100124479; Mir878.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al.
CC using RAKE and MPSS techniques [1]. Expression was later confirmed by
CC cloning [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004932"
FT /product="mmu-miR-878-5p"
FT /evidence=experimental
FT /experiment="cloned [2], 454 [3], Illumina [4-5]"
FT miRNA 47..68
FT /accession="MIMAT0004933"
FT /product="mmu-miR-878-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [4-5]"
XX
SQ Sequence 78 BP; 23 A; 15 C; 21 G; 0 T; 19 other;
ugcaaugcuu uaucuaguug gaugucaaga cacgugaaac uuaagugcau gacaccacac 60
uggguagagg agggcuca 78
//
ID mmu-mir-872 standard; RNA; MMU; 81 BP.
XX
AC MI0005549;
XX
DE Mus musculus miR-872 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718562; Mir872.
DR ENTREZGENE; 100124456; Mir872.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al.
CC using RAKE and MPSS techniques [1]. Expression was later confirmed by
CC cloning [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0004934"
FT /product="mmu-miR-872-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 50..71
FT /accession="MIMAT0004935"
FT /product="mmu-miR-872-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 81 BP; 19 A; 17 C; 15 G; 0 T; 30 other;
aacuuguuag aagguuacuu guuaguucag gaccucauua cuuucugccu gaacuauugc 60
aguagccucc uaacugguua u 81
//
ID mmu-mir-873a standard; RNA; MMU; 77 BP.
XX
AC MI0005550;
XX
DE Mus musculus miR-873 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718563; Mir873.
DR ENTREZGENE; 100124457; Mir873.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al.
CC using RAKE and MPSS techniques [1]. Expression was later confirmed by
CC cloning [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0004936"
FT /product="mmu-miR-873a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 47..67
FT /accession="MIMAT0017279"
FT /product="mmu-miR-873a-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 77 BP; 24 A; 17 C; 19 G; 0 T; 17 other;
gugugcauuu gcaggaacuu gugagucucc uauugaaaau agacaggaga cugacaaguu 60
cccgggaaca cccacaa 77
//
ID mmu-mir-875 standard; RNA; MMU; 78 BP.
XX
AC MI0005551;
XX
DE Mus musculus miR-875 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718565; Mir875.
DR ENTREZGENE; 100124469; Mir875.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al.
CC using RAKE and MPSS techniques [1]. Expression was independently shown in
CC human and rat [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004937"
FT /product="mmu-miR-875-5p"
FT /evidence=experimental
FT /experiment="RAKE [1], Illumina [3]"
FT miRNA 46..66
FT /accession="MIMAT0004938"
FT /product="mmu-miR-875-3p"
FT /evidence=experimental
FT /experiment="RAKE [1], Illumina [3]"
XX
SQ Sequence 78 BP; 22 A; 15 C; 14 G; 0 T; 27 other;
ucugugguac uauaccucag uuuuaucagg uguucauuaa aaucaccuga aaauacugag 60
gcuauguuuc acugagca 78
//
ID mmu-mir-511 standard; RNA; MMU; 79 BP.
XX
AC MI0005554;
XX
DE Mus musculus miR-511 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718546; Mir511.
DR ENTREZGENE; 100124488; Mir511.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al.
CC using RAKE and MPSS techniques [1]. Expression was independently shown in
CC human and rat [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0004940"
FT /product="mmu-miR-511-5p"
FT /evidence=experimental
FT /experiment="RAKE [1], Illumina [3-4]"
FT miRNA 49..70
FT /accession="MIMAT0017281"
FT /product="mmu-miR-511-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 79 BP; 25 A; 16 C; 17 G; 0 T; 21 other;
gauacccacc augccuuuug cucugcacuc aguaaauaau aauuugugaa uguguagcaa 60
aagacaggau ggggaucca 79
//
ID mmu-mir-544 standard; RNA; MMU; 78 BP.
XX
AC MI0005555;
XX
DE Mus musculus miR-544 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718547; Mir544.
DR ENTREZGENE; 100124450; Mir544.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al.
CC using RAKE and MPSS techniques [1]. Expression was independently shown in
CC human and rat [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0017282"
FT /product="mmu-miR-544-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 47..68
FT /accession="MIMAT0004941"
FT /product="mmu-miR-544-3p"
FT /evidence=experimental
FT /experiment="RAKE [1], Illumina [3-4]"
XX
SQ Sequence 78 BP; 22 A; 14 C; 20 G; 0 T; 22 other;
caccuaggga ucuuguuaaa aagcagaguc ugauugaggg gccaagauuc ugcauuuuua 60
gcaagcucuc aagugaug 78
//
ID mmu-mir-598 standard; RNA; MMU; 79 BP.
XX
AC MI0005556;
XX
DE Mus musculus miR-598 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718554; Mir598.
DR ENTREZGENE; 100124452; Mir598.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al.
CC using RAKE and MPSS techniques [1]. Expression was independently shown in
CC human and rat [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0017283"
FT /product="mmu-miR-598-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 48..69
FT /accession="MIMAT0004942"
FT /product="mmu-miR-598-3p"
FT /evidence=experimental
FT /experiment="RAKE [1], Illumina [3-4]"
XX
SQ Sequence 79 BP; 15 A; 18 C; 24 G; 0 T; 22 other;
gcugaugcug gcggugaugc cgauggugcg agcugaaaau gggcugcuac gucaucgucg 60
ucaucguuau caucaucau 79
//
ID mmu-mir-653 standard; RNA; MMU; 85 BP.
XX
AC MI0005557;
XX
DE Mus musculus miR-653 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17989215.
RA Calabrese JM, Seila AC, Yeo GW, Sharp PA;
RT "RNA sequence analysis defines Dicer's role in mouse embryonic stem
RT cells";
RL Proc Natl Acad Sci U S A. 104:18097-18102(2007).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718555; Mir653.
DR ENTREZGENE; 100124468; Mir653.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al.
CC using RAKE and MPSS techniques [1]. Expression was independently shown in
CC human and rat [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0004943"
FT /product="mmu-miR-653-5p"
FT /evidence=experimental
FT /experiment="RAKE [1], 454 [3], Illumina [4]"
FT miRNA 51..71
FT /accession="MIMAT0017284"
FT /product="mmu-miR-653-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 85 BP; 22 A; 18 C; 18 G; 0 T; 27 other;
cauucuuuca guguugaaac aaucucuacu gaaccaagcu ccaaagcgag uucacuggag 60
uuuguuucag uauugcagga gugcu 85
//
ID hsa-mir-744 standard; RNA; HSA; 98 BP.
XX
AC MI0005559;
XX
DE Homo sapiens miR-744 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 33658; MIR744.
DR ENTREZGENE; 100126313; MIR744.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al.
CC using RAKE and MPSS techniques [1]. Expression was later confirmed by
CC cloning [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004945"
FT /product="hsa-miR-744-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 68..89
FT /accession="MIMAT0004946"
FT /product="hsa-miR-744-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 98 BP; 22 A; 27 C; 26 G; 0 T; 23 other;
uugggcaagg ugcggggcua gggcuaacag cagucuuacu gaagguuucc uggaaaccac 60
gcacaugcug uugccacuaa ccucaaccuu acucgguc 98
//
ID hsa-mir-885 standard; RNA; HSA; 74 BP.
XX
AC MI0005560;
XX
DE Homo sapiens miR-885 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 33659; MIR885.
DR ENTREZGENE; 100126334; MIR885.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al.
CC using RAKE and MPSS techniques [1]. Expression was later confirmed by
CC cloning [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004947"
FT /product="hsa-miR-885-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 43..64
FT /accession="MIMAT0004948"
FT /product="hsa-miR-885-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 74 BP; 14 A; 23 C; 20 G; 0 T; 17 other;
ccgcacucuc uccauuacac uacccugccu cuucuccaug agaggcagcg ggguguagug 60
gauagagcac gggu 74
//
ID hsa-mir-877 standard; RNA; HSA; 86 BP.
XX
AC MI0005561;
XX
DE Homo sapiens miR-877 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17964270.
RA Berezikov E, Chung WJ, Willis J, Cuppen E, Lai EC;
RT "Mammalian mirtron genes";
RL Mol Cell. 28:328-336(2007).
XX
DR HGNC; 33660; MIR877.
DR ENTREZGENE; 100126314; MIR877.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al.
CC using RAKE and MPSS techniques [1]. Expression was later confirmed by
CC cloning [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..20
FT /accession="MIMAT0004949"
FT /product="hsa-miR-877-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
FT miRNA 66..86
FT /accession="MIMAT0004950"
FT /product="hsa-miR-877-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
XX
SQ Sequence 86 BP; 15 A; 25 C; 29 G; 0 T; 17 other;
guagaggaga uggcgcaggg gacacgggca aagacuuggg gguuccuggg acccucagac 60
guguguccuc uucucccucc ucccag 86
//
ID hsa-mir-887 standard; RNA; HSA; 79 BP.
XX
AC MI0005562;
XX
DE Homo sapiens miR-887 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 33661; MIR887.
DR ENTREZGENE; 100126347; MIR887.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al.
CC using RAKE and MPSS techniques [1]. Expression was later confirmed by
CC cloning [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0026720"
FT /product="hsa-miR-887-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 48..69
FT /accession="MIMAT0004951"
FT /product="hsa-miR-887-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
XX
SQ Sequence 79 BP; 15 A; 20 C; 24 G; 0 T; 20 other;
gugcagaucc uugggagccc uguuagacuc uggauuuuac acuuggagug aacgggcgcc 60
aucccgaggc uuugcacag 79
//
ID hsa-mir-873 standard; RNA; HSA; 77 BP.
XX
AC MI0005564;
XX
DE Homo sapiens miR-873 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 33663; MIR873.
DR ENTREZGENE; 100126316; MIR873.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al.
CC using RAKE and MPSS techniques [1]. Expression was later confirmed by
CC cloning [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0004953"
FT /product="hsa-miR-873-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 46..67
FT /accession="MIMAT0022717"
FT /product="hsa-miR-873-3p"
FT /evidence=not_experimental
XX
SQ Sequence 77 BP; 23 A; 16 C; 20 G; 0 T; 18 other;
gugugcauuu gcaggaacuu gugagucucc uauugaaaau gaacaggaga cugaugaguu 60
cccgggaaca cccacaa 77
//
ID hsa-mir-374b standard; RNA; HSA; 72 BP.
XX
AC MI0005566;
XX
DE Homo sapiens miR-374b stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 33665; MIR374B.
DR ENTREZGENE; 100126317; MIR374B.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al.
CC using RAKE and MPSS techniques [1]. Expression was later confirmed by
CC cloning [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004955"
FT /product="hsa-miR-374b-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT miRNA 41..62
FT /accession="MIMAT0004956"
FT /product="hsa-miR-374b-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 72 BP; 18 A; 15 C; 15 G; 0 T; 24 other;
acucggaugg auauaauaca accugcuaag uguccuagca cuuagcaggu uguauuauca 60
uuguccgugu cu 72
//
ID hsa-mir-760 standard; RNA; HSA; 80 BP.
XX
AC MI0005567;
XX
DE Homo sapiens miR-760 stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 33666; MIR760.
DR ENTREZGENE; 100126348; MIR760.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al.
CC using RAKE and MPSS techniques [1]. Expression was later confirmed by
CC cloning [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..68
FT /accession="MIMAT0004957"
FT /product="hsa-miR-760"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 80 BP; 16 A; 27 C; 24 G; 0 T; 13 other;
ggcgcgucgc cccccucagu ccaccagagc ccggauaccu cagaaauucg gcucuggguc 60
uguggggagc gaaaugcaac 80
//
ID hsa-mir-301b standard; RNA; HSA; 78 BP.
XX
AC MI0005568;
XX
DE Homo sapiens miR-301b stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 33667; MIR301B.
DR ENTREZGENE; 100126318; MIR301B.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al.
CC using RAKE and MPSS techniques [1]. Expression was later confirmed by
CC cloning [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0032026"
FT /product="hsa-miR-301b-5p"
FT /evidence=not_experimental
FT miRNA 45..67
FT /accession="MIMAT0004958"
FT /product="hsa-miR-301b-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 78 BP; 19 A; 18 C; 23 G; 0 T; 18 other;
gccgcaggug cucugacgag guugcacuac ugugcucuga gaagcagugc aaugauauug 60
ucaaagcauc ugggacca 78
//
ID hsa-mir-208b standard; RNA; HSA; 77 BP.
XX
AC MI0005570;
XX
DE Homo sapiens miR-208b stem-loop
XX
RN [1]
RX PUBMED; 16954537.
RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
RA H, Plasterk R, Cuppen E;
RT "Many novel mammalian microRNA candidates identified by extensive cloning
RT and RAKE analysis";
RL Genome Res. 16:1289-1298(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 33669; MIR208B.
DR ENTREZGENE; 100126336; MIR208B.
XX
CC This sequence was identified as a miRNA candidate by Berezikov et al.
CC using RAKE and MPSS techniques [1]. Expression was later confirmed by
CC cloning [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0026722"
FT /product="hsa-miR-208b-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 46..67
FT /accession="MIMAT0004960"
FT /product="hsa-miR-208b-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
XX
SQ Sequence 77 BP; 21 A; 14 C; 19 G; 0 T; 23 other;
ccucucaggg aagcuuuuug cucgaauuau guuucugauc cgaauauaag acgaacaaaa 60
gguuugucug agggcag 77
//
ID hsa-mir-509-3 standard; RNA; HSA; 75 BP.
XX
AC MI0005717;
XX
DE Homo sapiens miR-509-3 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 17573847.
RA Novotny GW, Nielsen JE, Sonne SB, Skakkebaek NE, Rajpert-De Meyts E,
RA Leffers H;
RT "Analysis of gene expression in normal and neoplastic human testis: new
RT roles of RNA";
RL Int J Androl. 30:316-326(2007).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 33675; MIR509-3.
DR ENTREZGENE; 100126337; MIR509-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0004975"
FT /product="hsa-miR-509-3-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 44..65
FT /accession="MIMAT0002881"
FT /product="hsa-miR-509-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2-3]"
XX
SQ Sequence 75 BP; 21 A; 12 C; 20 G; 0 T; 22 other;
gugguacccu acugcagacg uggcaaucau guauaauuaa aaaugauugg uacgucugug 60
gguagaguac ugcau 75
//
ID cgr-mir-21 standard; RNA; CGR; 92 BP.
XX
AC MI0005725;
XX
DE Cricetulus griseus miR-21 stem-loop
XX
RN [1]
RX PUBMED; 17570552.
RA Gammell P, Barron N, Kumar N, Clynes M;
RT "Initial identification of low temperature and culture stage induction of
RT miRNA expression in suspension CHO-K1 cells";
RL J Biotechnol. 130:213-218(2007).
XX
RN [2]
RX PUBMED; 21392545.
RA Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R,
RA Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs
RA S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J;
RT "Next-generation sequencing of the Chinese hamster ovary microRNA
RT transcriptome: Identification, annotation and profiling of microRNAs as
RT targets for cellular engineering";
RL J Biotechnol. 153:62-75(2011).
XX
DR ENTREZGENE; 100689258; Mir21.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0004417"
FT /product="cgr-miR-21-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
FT miRNA 56..77
FT /accession="MIMAT0022937"
FT /product="cgr-miR-21-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 92 BP; 19 A; 19 C; 24 G; 0 T; 30 other;
uguaccaccu ugucggguag cuuaucagac ugauguugac uguugaaucu cauggcaaca 60
gcagucgaug ggcugucuga cauuuuggua uc 92
//
ID hsa-mir-937 standard; RNA; HSA; 86 BP.
XX
AC MI0005759;
XX
DE Homo sapiens miR-937 stem-loop
XX
RN [1]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 33680; MIR937.
DR ENTREZGENE; 100126338; MIR937.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..33
FT /accession="MIMAT0022938"
FT /product="hsa-miR-937-5p"
FT /evidence=not_experimental
FT miRNA 51..72
FT /accession="MIMAT0004980"
FT /product="hsa-miR-937-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 86 BP; 9 A; 34 C; 26 G; 0 T; 17 other;
agcacugccc ccggugaguc aggguggggc uggcccccug cuucgugccc auccgcgcuc 60
ugacucucug cccaccugca ggagcu 86
//
ID hsa-mir-941-1 standard; RNA; HSA; 72 BP.
XX
AC MI0005763;
XX
DE Homo sapiens miR-941-1 stem-loop
XX
RN [1]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [2]
RX PUBMED; 19784364.
RA Goff LA, Davila J, Swerdel MR, Moore JC, Cohen RI, Wu H, Sun YE, Hart RP;
RT "Ago2 immunoprecipitation identifies predicted microRNAs in human
RT embryonic stem cells and neural precursors";
RL PLoS One. 4:e7192(2009).
XX
DR HGNC; 33684; MIR941-1.
DR ENTREZGENE; 100126329; MIR941-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 47..69
FT /accession="MIMAT0004984"
FT /product="hsa-miR-941"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 72 BP; 14 A; 23 C; 26 G; 0 T; 9 other;
uguggacaug ugcccagggc ccgggacagc gccacggaag aggacgcacc cggcugugug 60
cacaugugcc ca 72
//
ID hsa-mir-941-2 standard; RNA; HSA; 72 BP.
XX
AC MI0005764;
XX
DE Homo sapiens miR-941-2 stem-loop
XX
RN [1]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [2]
RX PUBMED; 19784364.
RA Goff LA, Davila J, Swerdel MR, Moore JC, Cohen RI, Wu H, Sun YE, Hart RP;
RT "Ago2 immunoprecipitation identifies predicted microRNAs in human
RT embryonic stem cells and neural precursors";
RL PLoS One. 4:e7192(2009).
XX
DR HGNC; 33685; MIR941-2.
DR ENTREZGENE; 100126339; MIR941-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 47..69
FT /accession="MIMAT0004984"
FT /product="hsa-miR-941"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 72 BP; 14 A; 24 C; 25 G; 0 T; 9 other;
ugugcacaug ugcccagggc ccgggacagc gccacggaag aggacgcacc cggcugugug 60
cacaugugcc ca 72
//
ID hsa-mir-941-3 standard; RNA; HSA; 72 BP.
XX
AC MI0005765;
XX
DE Homo sapiens miR-941-3 stem-loop
XX
RN [1]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [2]
RX PUBMED; 19784364.
RA Goff LA, Davila J, Swerdel MR, Moore JC, Cohen RI, Wu H, Sun YE, Hart RP;
RT "Ago2 immunoprecipitation identifies predicted microRNAs in human
RT embryonic stem cells and neural precursors";
RL PLoS One. 4:e7192(2009).
XX
DR HGNC; 33686; MIR941-3.
DR ENTREZGENE; 100126352; MIR941-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 47..69
FT /accession="MIMAT0004984"
FT /product="hsa-miR-941"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 72 BP; 14 A; 24 C; 25 G; 0 T; 9 other;
ugugcacaug ugcccagggc ccgggacagc gccacggaag aggacgcacc cggcugugug 60
cacaugugcc ca 72
//
ID hsa-mir-941-4 standard; RNA; HSA; 72 BP.
XX
AC MI0005766;
XX
DE Homo sapiens miR-941-4 stem-loop
XX
RN [1]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [2]
RX PUBMED; 19784364.
RA Goff LA, Davila J, Swerdel MR, Moore JC, Cohen RI, Wu H, Sun YE, Hart RP;
RT "Ago2 immunoprecipitation identifies predicted microRNAs in human
RT embryonic stem cells and neural precursors";
RL PLoS One. 4:e7192(2009).
XX
DR HGNC; 33687; MIR941-4.
DR ENTREZGENE; 100126330; MIR941-4.
XX
FH Key Location/Qualifiers
FH
FT miRNA 47..69
FT /accession="MIMAT0004984"
FT /product="hsa-miR-941"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 72 BP; 14 A; 24 C; 25 G; 0 T; 9 other;
ugugcacaug ugcccagggc ccgggacagc gccacggaag aggacgcacc cggcugugug 60
cacaugugcc ca 72
//
ID hsa-mir-942 standard; RNA; HSA; 86 BP.
XX
AC MI0005767;
XX
DE Homo sapiens miR-942 stem-loop
XX
RN [1]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 33688; MIR942.
DR ENTREZGENE; 100126331; MIR942.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0004985"
FT /product="hsa-miR-942-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
FT miRNA 53..74
FT /accession="MIMAT0026734"
FT /product="hsa-miR-942-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 86 BP; 22 A; 21 C; 17 G; 0 T; 26 other;
auuaggagag uaucuucucu guuuuggcca uguguguacu cacagccccu cacacauggc 60
cgaaacagag aaguuacuuu ccuaau 86
//
ID dme-mir-iab-8 standard; RNA; DME; 68 BP.
XX
AC MI0005805;
XX
DE Drosophila melanogaster miR-iab-8 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 18172160.
RA Stark A, Bushati N, Jan CH, Kheradpour P, Hodges E, Brennecke J, Bartel
RA DP, Cohen SM, Kellis M;
RT "A single Hox locus in Drosophila produces functional microRNAs from
RT opposite DNA strands";
RL Genes Dev. 22:8-13(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0005463"
FT /product="dme-miR-iab-8-5p"
FT /evidence=experimental
FT /experiment="454 [1], in-situ [2]"
FT miRNA 44..65
FT /accession="MIMAT0005464"
FT /product="dme-miR-iab-8-3p"
FT /evidence=experimental
FT /experiment="454 [1], in-situ [2]"
XX
SQ Sequence 68 BP; 21 A; 12 C; 15 G; 0 T; 20 other;
ucguguuacg uauacugaag guauaccgga uaggauacac ucaggauaca uucaguauac 60
guuuacga 68
//
ID dme-mir-190 standard; RNA; DME; 100 BP.
XX
AC MI0005808;
XX
DE Drosophila melanogaster miR-190 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..47
FT /accession="MIMAT0005467"
FT /product="dme-miR-190-5p"
FT /evidence=experimental
FT /experiment="454 [1-2], Illumina [2]"
FT miRNA 65..86
FT /accession="MIMAT0020848"
FT /product="dme-miR-190-3p"
FT /evidence=not_experimental
XX
SQ Sequence 100 BP; 28 A; 19 C; 18 G; 0 T; 35 other;
cgaacuaauu gaugguucca gugagauaug uuugauauuc uugguuguuu cauucaaaag 60
uucacccagg aaucaaacau auuauuacug ugacccucgc 100
//
ID dme-mir-193 standard; RNA; DME; 108 BP.
XX
AC MI0005809;
XX
DE Drosophila melanogaster miR-193 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0020849"
FT /product="dme-miR-193-5p"
FT /evidence=not_experimental
FT miRNA 73..94
FT /accession="MIMAT0005468"
FT /product="dme-miR-193-3p"
FT /evidence=experimental
FT /experiment="454 [1-2], Illumina [2]"
XX
SQ Sequence 108 BP; 31 A; 18 C; 19 G; 0 T; 40 other;
ugugugcccu uauuaugguu gggauuuuuu agaucagcag uuauugcuau auagccauau 60
uuauaaaucu ucuacuggcc uacuaagucc caacauaaug agaguaaa 108
//
ID dme-mir-956 standard; RNA; DME; 148 BP.
XX
AC MI0005810;
XX
DE Drosophila melanogaster miR-956 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..34
FT /accession="MIMAT0020850"
FT /product="dme-miR-956-5p"
FT /evidence=not_experimental
FT miRNA 117..139
FT /accession="MIMAT0005469"
FT /product="dme-miR-956-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 148 BP; 34 A; 36 C; 38 G; 0 T; 40 other;
gaucguuauc guguuuggaa uggucucguu agcuaacgga ugagcaagug cucggcucac 60
uggcccaaau gcaguuugcc cggagacgcc gguuaaccca gcacugaaau guguaguuuc 120
gagaccacuc uaauccauug cagcauuu 148
//
ID dme-mir-957 standard; RNA; DME; 96 BP.
XX
AC MI0005811;
XX
DE Drosophila melanogaster miR-957 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0020851"
FT /product="dme-miR-957-5p"
FT /evidence=not_experimental
FT miRNA 61..82
FT /accession="MIMAT0005470"
FT /product="dme-miR-957-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 96 BP; 21 A; 21 C; 26 G; 0 T; 28 other;
uguccacaau agaccuuagu uuucgacgug uuuuggugug cuggggaguu cuauuccgau 60
ugaaaccguc caaaacugag gccaacugug aggcgc 96
//
ID dme-mir-958 standard; RNA; DME; 92 BP.
XX
AC MI0005812;
XX
DE Drosophila melanogaster miR-958 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0020852"
FT /product="dme-miR-958-5p"
FT /evidence=not_experimental
FT miRNA 58..79
FT /accession="MIMAT0005471"
FT /product="dme-miR-958-3p"
FT /evidence=experimental
FT /experiment="454 [1-2], Illumina [2]"
XX
SQ Sequence 92 BP; 23 A; 20 C; 18 G; 0 T; 31 other;
ggcgugucua uggcaaguag aauagcaggc uuaucacaug uuuaauucaa ucugcuguga 60
gauucuucua uucuacuuuc gacaacaccc gu 92
//
ID dme-mir-375 standard; RNA; DME; 91 BP.
XX
AC MI0005813;
XX
DE Drosophila melanogaster miR-375 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0020853"
FT /product="dme-miR-375-5p"
FT /evidence=not_experimental
FT miRNA 55..76
FT /accession="MIMAT0005472"
FT /product="dme-miR-375-3p"
FT /evidence=experimental
FT /experiment="454 [1-2], Illumina [2]"
XX
SQ Sequence 91 BP; 21 A; 19 C; 23 G; 0 T; 28 other;
ccgggcagcg aauuacuugg gccaagggaa ugcaaacugu gaucaucccg aaaguuuguu 60
cguuuggcuu aaguuauuuu cauguccgac u 91
//
ID dme-mir-959 standard; RNA; DME; 98 BP.
XX
AC MI0005814;
XX
DE Drosophila melanogaster miR-959 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..40
FT /accession="MIMAT0020854"
FT /product="dme-miR-959-5p"
FT /evidence=not_experimental
FT miRNA 61..82
FT /accession="MIMAT0005473"
FT /product="dme-miR-959-3p"
FT /evidence=experimental
FT /experiment="454 [1-2], Illumina [2]"
XX
SQ Sequence 98 BP; 27 A; 13 C; 20 G; 0 T; 38 other;
uuaacuuugu ucuauauucu uaguacucgg guugauaaag accuuuucuu cagggagccu 60
uugucaucgg ggguauuaug aaauauaguu uaaagaaa 98
//
ID dme-mir-960 standard; RNA; DME; 93 BP.
XX
AC MI0005815;
XX
DE Drosophila melanogaster miR-960 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0005474"
FT /product="dme-miR-960-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 57..78
FT /accession="MIMAT0020855"
FT /product="dme-miR-960-3p"
FT /evidence=not_experimental
XX
SQ Sequence 93 BP; 22 A; 18 C; 19 G; 0 T; 34 other;
ggguuuugua ccacauucug aguauuccag auugcauagc uuugugcuac uauugcuaua 60
cggucuggga cacuuuuaac augguaucaa auc 93
//
ID dme-mir-961 standard; RNA; DME; 89 BP.
XX
AC MI0005816;
XX
DE Drosophila melanogaster miR-961 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0005475"
FT /product="dme-miR-961-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 55..76
FT /accession="MIMAT0020856"
FT /product="dme-miR-961-3p"
FT /evidence=not_experimental
XX
SQ Sequence 89 BP; 23 A; 18 C; 20 G; 0 T; 28 other;
ucaagggccg aguuaccuuu gaucaccagu aacugagauu guuucugaua cgguuucguu 60
uucuggcaau caaaagaacu uggacucga 89
//
ID dme-mir-962 standard; RNA; DME; 92 BP.
XX
AC MI0005817;
XX
DE Drosophila melanogaster miR-962 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..42
FT /accession="MIMAT0005476"
FT /product="dme-miR-962-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 55..76
FT /accession="MIMAT0020857"
FT /product="dme-miR-962-3p"
FT /evidence=not_experimental
XX
SQ Sequence 92 BP; 23 A; 20 C; 18 G; 0 T; 31 other;
gauggggcac ucaggcuaua agguagagaa auugaugcug ucuacacuau ucagacuuca 60
guuucauuac cuuucaauuu guuugccccc au 92
//
ID dme-mir-963 standard; RNA; DME; 89 BP.
XX
AC MI0005818;
XX
DE Drosophila melanogaster miR-963 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0005477"
FT /product="dme-miR-963-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 54..75
FT /accession="MIMAT0020858"
FT /product="dme-miR-963-3p"
FT /evidence=not_experimental
XX
SQ Sequence 89 BP; 29 A; 15 C; 14 G; 0 T; 31 other;
uuagucuaau cuaaaacaag guaaauauca gguuguuucc uguauucgau cgaaacaucu 60
guauauaccu uuguuccgau uggacaaaa 89
//
ID dme-mir-932 standard; RNA; DME; 91 BP.
XX
AC MI0005820;
XX
DE Drosophila melanogaster miR-932 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0005479"
FT /product="dme-miR-932-5p"
FT /evidence=experimental
FT /experiment="454 [1-2], Illumina [2]"
FT miRNA 55..76
FT /accession="MIMAT0020860"
FT /product="dme-miR-932-3p"
FT /evidence=not_experimental
XX
SQ Sequence 91 BP; 17 A; 17 C; 21 G; 0 T; 36 other;
uugguuuuga aguuuucaau uccguagugc auugcagugu guuucauuau uuacugcaag 60
cgcugcggau uuggcaacuu ugacgaccuu c 91
//
ID dme-mir-965 standard; RNA; DME; 107 BP.
XX
AC MI0005821;
XX
DE Drosophila melanogaster miR-965 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0020861"
FT /product="dme-miR-965-5p"
FT /evidence=not_experimental
FT miRNA 66..87
FT /accession="MIMAT0005480"
FT /product="dme-miR-965-3p"
FT /evidence=experimental
FT /experiment="454 [1-2], Illumina [2]"
XX
SQ Sequence 107 BP; 30 A; 19 C; 21 G; 0 T; 37 other;
gacaauauug cucaacauuu ugggggguaa aacuguacgu uauaugugcc cuucugugau 60
auucauaagc guauagcuuu uccccuuaaa aguuagagcu auugcaa 107
//
ID dme-mir-966 standard; RNA; DME; 87 BP.
XX
AC MI0005822;
XX
DE Drosophila melanogaster miR-966 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0005481"
FT /product="dme-miR-966-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 51..72
FT /accession="MIMAT0020862"
FT /product="dme-miR-966-3p"
FT /evidence=not_experimental
XX
SQ Sequence 87 BP; 13 A; 23 C; 31 G; 0 T; 20 other;
aaccugaucc gcugcugugg guugugggcu guguggcugu gguauaggug ccgccaguug 60
auaaccccca gcgugggcac ggaccca 87
//
ID dme-mir-967 standard; RNA; DME; 97 BP.
XX
AC MI0005823;
XX
DE Drosophila melanogaster miR-967 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0005482"
FT /product="dme-miR-967-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 65..87
FT /accession="MIMAT0020863"
FT /product="dme-miR-967-3p"
FT /evidence=not_experimental
XX
SQ Sequence 97 BP; 21 A; 31 C; 22 G; 0 T; 23 other;
cuuggagagc agagauaccu cuggagaagc gcgugaccug accccagcag gagaacccaa 60
cccgcuuuuc caccuaggug ucucucucuc ucuuuau 97
//
ID dme-mir-1002 standard; RNA; DME; 89 BP.
XX
AC MI0005824;
XX
DE Drosophila melanogaster miR-1002 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0005483"
FT /product="dme-miR-1002-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 56..77
FT /accession="MIMAT0020864"
FT /product="dme-miR-1002-3p"
FT /evidence=not_experimental
XX
SQ Sequence 89 BP; 30 A; 9 C; 18 G; 0 T; 32 other;
uagaaauuau auauuuaagu aguggauaca aagggcgauu ugauauaaaa gugucgcauu 60
guaugaccua cuuaacuagc ugauuuugu 89
//
ID dme-mir-968 standard; RNA; DME; 92 BP.
XX
AC MI0005825;
XX
DE Drosophila melanogaster miR-968 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0005484"
FT /product="dme-miR-968-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 58..79
FT /accession="MIMAT0020865"
FT /product="dme-miR-968-3p"
FT /evidence=not_experimental
XX
SQ Sequence 92 BP; 28 A; 17 C; 15 G; 0 T; 32 other;
ugauggaagc uuccuuaagu aguauccauu aaaggguugu ucucaacaug caaaucaacc 60
uuuugaugua cuacuuuaag aaucuccagu ua 92
//
ID dme-mir-969 standard; RNA; DME; 94 BP.
XX
AC MI0005826;
XX
DE Drosophila melanogaster miR-969 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0005485"
FT /product="dme-miR-969-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 60..80
FT /accession="MIMAT0020866"
FT /product="dme-miR-969-3p"
FT /evidence=not_experimental
XX
SQ Sequence 94 BP; 25 A; 20 C; 21 G; 0 T; 28 other;
agucucuguc cuacguccga guuccacuaa gcaaguuuug agaucguuuu aaaaacaaaa 60
acuugacacg uugagcucgu ucgugggaug gacu 94
//
ID dme-mir-970 standard; RNA; DME; 95 BP.
XX
AC MI0005827;
XX
DE Drosophila melanogaster miR-970 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..40
FT /accession="MIMAT0020867"
FT /product="dme-miR-970-5p"
FT /evidence=not_experimental
FT miRNA 61..81
FT /accession="MIMAT0005486"
FT /product="dme-miR-970-3p"
FT /evidence=experimental
FT /experiment="454 [1-2], Illumina [2]"
XX
SQ Sequence 95 BP; 25 A; 16 C; 24 G; 0 T; 30 other;
gaaaggcauc uguugcagcu agcggguguu uuauuuggua gcuguaauga uuugaaucua 60
ucauaagaca cacgcggcua uaaccguugu cuaag 95
//
ID dme-mir-971 standard; RNA; DME; 96 BP.
XX
AC MI0005828;
XX
DE Drosophila melanogaster miR-971 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..43
FT /accession="MIMAT0020868"
FT /product="dme-miR-971-5p"
FT /evidence=not_experimental
FT miRNA 60..81
FT /accession="MIMAT0005487"
FT /product="dme-miR-971-3p"
FT /evidence=experimental
FT /experiment="454 [1-2], Illumina [2]"
XX
SQ Sequence 96 BP; 18 A; 23 C; 24 G; 0 T; 31 other;
uccguggcug gcaucgcucg cuguaaauug uaaucaucaa agcguuuucu cagagccgcu 60
ugguguuacu ucuuacagug agugugccag uccgua 96
//
ID dme-mir-973 standard; RNA; DME; 101 BP.
XX
AC MI0005830;
XX
DE Drosophila melanogaster miR-973 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..43
FT /accession="MIMAT0005489"
FT /product="dme-miR-973-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 65..86
FT /accession="MIMAT0020870"
FT /product="dme-miR-973-3p"
FT /evidence=not_experimental
XX
SQ Sequence 101 BP; 29 A; 18 C; 21 G; 0 T; 33 other;
accgucgucg acuuuucgug guuggugguu gaacuucgau uuuaaguauu uaaauaaaau 60
gaaaucuguu cauucuccga cacaagaagu ucacgcaaag g 101
//
ID dme-mir-974 standard; RNA; DME; 101 BP.
XX
AC MI0005831;
XX
DE Drosophila melanogaster miR-974 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0005490"
FT /product="dme-miR-974-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 65..86
FT /accession="MIMAT0020871"
FT /product="dme-miR-974-3p"
FT /evidence=not_experimental
XX
SQ Sequence 101 BP; 32 A; 20 C; 21 G; 0 T; 28 other;
caauugucac cggucauguc cuccaagcga gcaaagaagu aguauuugug uuuccaagag 60
caaauauaac uucauuggaa gcuaagugga uuugcccaaa u 101
//
ID dme-mir-975 standard; RNA; DME; 91 BP.
XX
AC MI0005832;
XX
DE Drosophila melanogaster miR-975 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0005491"
FT /product="dme-miR-975-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 55..76
FT /accession="MIMAT0020872"
FT /product="dme-miR-975-3p"
FT /evidence=not_experimental
XX
SQ Sequence 91 BP; 21 A; 17 C; 18 G; 0 T; 35 other;
uugaauuuuu gauuuuaaac acuuccuaca uccuguaugu guuuugcauc cgguacagau 60
gugggagucg uuugcacuca gagauuucac a 91
//
ID dme-mir-977 standard; RNA; DME; 99 BP.
XX
AC MI0005834;
XX
DE Drosophila melanogaster miR-977 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0020874"
FT /product="dme-miR-977-5p"
FT /evidence=not_experimental
FT miRNA 66..86
FT /accession="MIMAT0005493"
FT /product="dme-miR-977-3p"
FT /evidence=experimental
FT /experiment="454 [1-2], Illumina [2]"
XX
SQ Sequence 99 BP; 33 A; 17 C; 16 G; 0 T; 33 other;
cgaaucaaca aacaagguau gcuuuagaua acucgaauau cacaucuuca guguucgaaa 60
ucugaugaga uauucacguu gucuaaauca uguuuugua 99
//
ID dme-mir-978 standard; RNA; DME; 92 BP.
XX
AC MI0005835;
XX
DE Drosophila melanogaster miR-978 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0020875"
FT /product="dme-miR-978-5p"
FT /evidence=not_experimental
FT miRNA 56..77
FT /accession="MIMAT0005494"
FT /product="dme-miR-978-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 92 BP; 24 A; 22 C; 23 G; 0 T; 23 other;
guuggcggca caaucugcaa ucuacgccac uggcuuacgu ugcaaucgaa aaucgugucc 60
agugccguaa auugcaguug ugugaacgca aa 92
//
ID dme-mir-979 standard; RNA; DME; 95 BP.
XX
AC MI0005836;
XX
DE Drosophila melanogaster miR-979 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0020876"
FT /product="dme-miR-979-5p"
FT /evidence=not_experimental
FT miRNA 60..80
FT /accession="MIMAT0005495"
FT /product="dme-miR-979-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 95 BP; 27 A; 17 C; 20 G; 0 T; 31 other;
uacaugugag gaugucacaa auacacugaa uuugggggga auucuuaugu auauacaaau 60
ucuucccgaa cucaggcuaa uuuuguggca uccgu 95
//
ID dme-mir-980 standard; RNA; DME; 98 BP.
XX
AC MI0005837;
XX
DE Drosophila melanogaster miR-980 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0020877"
FT /product="dme-miR-980-5p"
FT /evidence=not_experimental
FT miRNA 61..82
FT /accession="MIMAT0005496"
FT /product="dme-miR-980-3p"
FT /evidence=experimental
FT /experiment="454 [1-2], Illumina [2]"
XX
SQ Sequence 98 BP; 18 A; 17 C; 22 G; 0 T; 41 other;
aguugauugu augucaguuu uucauuuggc cuggcuagcu uacuccuuuu uaaauauugc 60
uagcugccuu gugaagggcu uacguguaau ugcaguuc 98
//
ID dme-mir-981 standard; RNA; DME; 97 BP.
XX
AC MI0005838;
XX
DE Drosophila melanogaster miR-981 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0020878"
FT /product="dme-miR-981-5p"
FT /evidence=not_experimental
FT miRNA 61..82
FT /accession="MIMAT0005497"
FT /product="dme-miR-981-3p"
FT /evidence=experimental
FT /experiment="454 [1-2], Illumina [2]"
XX
SQ Sequence 97 BP; 27 A; 19 C; 23 G; 0 T; 28 other;
aaacauccuc acugaagucg gguuucguua gcagcgggcu guuuuaauaa auucaacaag 60
uucguugucg acgaaaccug caugcugugu ggaaaau 97
//
ID dme-mir-982 standard; RNA; DME; 93 BP.
XX
AC MI0005839;
XX
DE Drosophila melanogaster miR-982 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0005498"
FT /product="dme-miR-982-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 55..76
FT /accession="MIMAT0020879"
FT /product="dme-miR-982-3p"
FT /evidence=not_experimental
XX
SQ Sequence 93 BP; 31 A; 13 C; 15 G; 0 T; 34 other;
cgaaaucaug uuagauccug gacaaauaug aaguaaauug uuuuuaugca ucaauuacuu 60
gauauucauc cuugaacuaa augguuuuag agc 93
//
ID dme-mir-983-1 standard; RNA; DME; 91 BP.
XX
AC MI0005840;
XX
DE Drosophila melanogaster miR-983-1 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0005499"
FT /product="dme-miR-983-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 54..75
FT /accession="MIMAT0020880"
FT /product="dme-miR-983-3p"
FT /evidence=not_experimental
XX
SQ Sequence 91 BP; 30 A; 11 C; 12 G; 0 T; 38 other;
uauauugcaa uaauuaaaua auacguuucg aacuaaugau uuucaguuca uucauuaggu 60
aguuacgcau uaucuaguug uuguaaacau u 91
//
ID dme-mir-983-2 standard; RNA; DME; 99 BP.
XX
AC MI0005841;
XX
DE Drosophila melanogaster miR-983-2 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0005499"
FT /product="dme-miR-983-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 57..78
FT /accession="MIMAT0020880"
FT /product="dme-miR-983-3p"
FT /evidence=not_experimental
XX
SQ Sequence 99 BP; 33 A; 13 C; 12 G; 0 T; 41 other;
uauuauauug caauaauuaa auaauacguu ucgaacuaau gauuuucagu ucauucauua 60
gguaguuacg cauuaucuag uuguuguaaa cauucaacu 99
//
ID dme-mir-984 standard; RNA; DME; 90 BP.
XX
AC MI0005842;
XX
DE Drosophila melanogaster miR-984 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0005500"
FT /product="dme-miR-984-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 55..74
FT /accession="MIMAT0020881"
FT /product="dme-miR-984-3p"
FT /evidence=not_experimental
XX
SQ Sequence 90 BP; 29 A; 13 C; 16 G; 0 T; 32 other;
agaaacaaau uucauugagg uaaauacggu uggaauuuug ucuuuuaacu auaaauccaa 60
ccgaauuugg cucggcgaaa uuuuucaguu 90
//
ID dme-mir-927 standard; RNA; DME; 92 BP.
XX
AC MI0005843;
XX
DE Drosophila melanogaster miR-927 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0005501"
FT /product="dme-miR-927-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 56..77
FT /accession="MIMAT0020882"
FT /product="dme-miR-927-3p"
FT /evidence=not_experimental
XX
SQ Sequence 92 BP; 23 A; 20 C; 20 G; 0 T; 29 other;
ugguugcugu agaguuuuag aauuccuacg cuuuaccgug gcauacgaaa uucggcaaag 60
cguuuggauu cugaaacccu accgauccau ua 92
//
ID dme-mir-985 standard; RNA; DME; 86 BP.
XX
AC MI0005844;
XX
DE Drosophila melanogaster miR-985 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0020883"
FT /product="dme-miR-985-5p"
FT /evidence=not_experimental
FT miRNA 49..70
FT /accession="MIMAT0005502"
FT /product="dme-miR-985-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 86 BP; 23 A; 17 C; 16 G; 0 T; 30 other;
uauauaauag cacugcuggc ucauugguac auuucauaag uaccuuauca aauguuccaa 60
uggucgggca gagcuauuau uugucc 86
//
ID dme-mir-986 standard; RNA; DME; 100 BP.
XX
AC MI0005845;
XX
DE Drosophila melanogaster miR-986 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0005503"
FT /product="dme-miR-986-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 65..86
FT /accession="MIMAT0020884"
FT /product="dme-miR-986-3p"
FT /evidence=not_experimental
XX
SQ Sequence 100 BP; 26 A; 24 C; 24 G; 0 T; 26 other;
cacaccugaa auuacccauc ucgaauagcg uugugacuga gguaacugcg caucgaaucu 60
acucagcggc gaggcuauuc aaguaagguu auuuugggcc 100
//
ID dme-mir-988 standard; RNA; DME; 99 BP.
XX
AC MI0005847;
XX
DE Drosophila melanogaster miR-988 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
RN [3]
RX PUBMED; 18463636.
RA Kawamura Y, Saito K, Kin T, Ono Y, Asai K, Sunohara T, Okada TN, Siomi MC,
RA Siomi H;
RT "Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells";
RL Nature. 453:793-797(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..47
FT /accession="MIMAT0020886"
FT /product="dme-miR-988-5p"
FT /evidence=not_experimental
FT miRNA 62..83
FT /accession="MIMAT0005505"
FT /product="dme-miR-988-3p"
FT /evidence=experimental
FT /experiment="454 [1-3], Illumina [2]"
XX
SQ Sequence 99 BP; 23 A; 20 C; 27 G; 0 T; 29 other;
gacggcggua ccgggcauuu ugggugugug auuuguagca aagugauaug uauuugauca 60
uccccuuguu gcaaaccuca cgccaaagau gaucugcga 99
//
ID dme-mir-989 standard; RNA; DME; 174 BP.
XX
AC MI0005848;
XX
DE Drosophila melanogaster miR-989 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0020887"
FT /product="dme-miR-989-5p"
FT /evidence=not_experimental
FT miRNA 139..159
FT /accession="MIMAT0005506"
FT /product="dme-miR-989-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 174 BP; 50 A; 32 C; 40 G; 0 T; 52 other;
aaagauuuug ggaaucggcc acuaccuugc agucacguga ugaaaagaca caggugacac 60
ugauccggau uugguaguug acaaauccuc caugccgaga uuaguuucau uuugcgucuu 120
uugaauucga auaguucaug ugaugugacg uaguggaaca uaccugaaau uaca 174
//
ID dme-mir-137 standard; RNA; DME; 91 BP.
XX
AC MI0005849;
XX
DE Drosophila melanogaster miR-137 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0020888"
FT /product="dme-miR-137-5p"
FT /evidence=not_experimental
FT miRNA 54..75
FT /accession="MIMAT0005507"
FT /product="dme-miR-137-3p"
FT /evidence=experimental
FT /experiment="454 [1-2], Illumina [2]"
XX
SQ Sequence 91 BP; 26 A; 20 C; 17 G; 0 T; 28 other;
caaucuccaa uggccacgug uaugcucgua gcuauaaccu gaaauccaaa uguuauugcu 60
ugagaauaca cguaguucac cgagauuugu u 91
//
ID dme-mir-990 standard; RNA; DME; 86 BP.
XX
AC MI0005850;
XX
DE Drosophila melanogaster miR-990 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0005508"
FT /product="dme-miR-990-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 49..72
FT /accession="MIMAT0020889"
FT /product="dme-miR-990-3p"
FT /evidence=not_experimental
XX
SQ Sequence 86 BP; 13 A; 30 C; 21 G; 0 T; 22 other;
ucugcucugc gacauucacc guucugaguu ggccccaagu gcacgugggc cagcuuucag 60
cuucggugcc auuucacccc gagcac 86
//
ID dme-mir-991 standard; RNA; DME; 96 BP.
XX
AC MI0005851;
XX
DE Drosophila melanogaster miR-991 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0020890"
FT /product="dme-miR-991-5p"
FT /evidence=not_experimental
FT miRNA 61..82
FT /accession="MIMAT0005509"
FT /product="dme-miR-991-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 96 BP; 25 A; 17 C; 14 G; 0 T; 40 other;
uaucacugca guuucaggcu uuucccaacu acaccuauua auacauauuu uaacguccua 60
uuaaaguugu aguuuggaaa guuuugguuu ugcauu 96
//
ID dme-mir-992 standard; RNA; DME; 92 BP.
XX
AC MI0005852;
XX
DE Drosophila melanogaster miR-992 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0020891"
FT /product="dme-miR-992-5p"
FT /evidence=not_experimental
FT miRNA 53..74
FT /accession="MIMAT0005510"
FT /product="dme-miR-992-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 92 BP; 25 A; 15 C; 17 G; 0 T; 35 other;
auuuucccaa gugccuggua ucagcaaagu guuauuuuuu auguuuaugu aaaguacacg 60
uuucugguac uaaguacuuc gagaaaguua cc 92
//
ID dme-mir-929 standard; RNA; DME; 88 BP.
XX
AC MI0005853;
XX
DE Drosophila melanogaster miR-929 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0020892"
FT /product="dme-miR-929-5p"
FT /evidence=not_experimental
FT miRNA 52..72
FT /accession="MIMAT0005511"
FT /product="dme-miR-929-3p"
FT /evidence=experimental
FT /experiment="454 [1-2], Illumina [2]"
XX
SQ Sequence 88 BP; 24 A; 18 C; 26 G; 0 T; 20 other;
aguccuggug gagcucaaau ugacucuagu agggaguccu uuaaugagcg acucccuaac 60
ggagucagau ugagcugcaa aggagcga 88
//
ID dme-mir-993 standard; RNA; DME; 119 BP.
XX
AC MI0005854;
XX
DE Drosophila melanogaster miR-993 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0020893"
FT /product="dme-miR-993-5p"
FT /evidence=not_experimental
FT miRNA 85..107
FT /accession="MIMAT0005512"
FT /product="dme-miR-993-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 119 BP; 24 A; 31 C; 30 G; 0 T; 34 other;
aacgcucccg ugaccuaccc uguaguuccg ggcuuuuguu uaaauggcgu ucggcacauu 60
gucggacugc uggcucgauu aucagaagcu cgucucuaca gguaucucac aggguagaa 119
//
ID dme-mir-994 standard; RNA; DME; 91 BP.
XX
AC MI0005855;
XX
DE Drosophila melanogaster miR-994 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0005513"
FT /product="dme-miR-994-5p"
FT /evidence=experimental
FT /experiment="454 [1-2], Illumina [2]"
FT miRNA 58..80
FT /accession="MIMAT0020894"
FT /product="dme-miR-994-3p"
FT /evidence=not_experimental
XX
SQ Sequence 91 BP; 24 A; 15 C; 15 G; 0 T; 37 other;
uaucgaguua ucuaaggaaa uaguagccgu gauuuuaccc aagaauuuuu cacauaucac 60
aguugcuguu ucuuuuagau agcucuuuug u 91
//
ID dme-mir-995 standard; RNA; DME; 90 BP.
XX
AC MI0005856;
XX
DE Drosophila melanogaster miR-995 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
RN [3]
RX PUBMED; 18463636.
RA Kawamura Y, Saito K, Kin T, Ono Y, Asai K, Sunohara T, Okada TN, Siomi MC,
RA Siomi H;
RT "Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells";
RL Nature. 453:793-797(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0010206"
FT /product="dme-miR-995-5p"
FT /evidence=experimental
FT /experiment="454 [3]"
FT miRNA 55..75
FT /accession="MIMAT0005514"
FT /product="dme-miR-995-3p"
FT /evidence=experimental
FT /experiment="454 [1-3], Illumina [2]"
XX
SQ Sequence 90 BP; 18 A; 28 C; 23 G; 0 T; 21 other;
caccugcacc ccgcagcccg aauuaugugg gagcugcgcc guuuccguaa uccguagcac 60
cacaugauuc ggcuucgugg uacaggauau 90
//
ID dme-mir-252 standard; RNA; DME; 93 BP.
XX
AC MI0005858;
XX
DE Drosophila melanogaster miR-252 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0005516"
FT /product="dme-miR-252-5p"
FT /evidence=experimental
FT /experiment="454 [1-2], Illumina [2]"
FT miRNA 60..81
FT /accession="MIMAT0020896"
FT /product="dme-miR-252-3p"
FT /evidence=not_experimental
XX
SQ Sequence 93 BP; 20 A; 25 C; 23 G; 0 T; 25 other;
accaaguucg cuuuccuaag uacuagugcc gcaggaguua gguucguguc cgcaauaccu 60
ccugcugccc aagugcuuau uaaagcggcg agu 93
//
ID dme-mir-998 standard; RNA; DME; 143 BP.
XX
AC MI0005860;
XX
DE Drosophila melanogaster miR-998 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0020898"
FT /product="dme-miR-998-5p"
FT /evidence=not_experimental
FT miRNA 100..120
FT /accession="MIMAT0005518"
FT /product="dme-miR-998-3p"
FT /evidence=experimental
FT /experiment="454 [1-2], Illumina [2]"
XX
SQ Sequence 143 BP; 38 A; 32 C; 29 G; 0 T; 44 other;
ccucguguca aauucauuuu ggaacugaau ucucgugggu cugcacugac aacacugacc 60
gcuccagggc aaauuguuca uuuugaaauu gaaauucugu agcaccauga gauucagcuc 120
uggcgugaau uucaaacaug cau 143
//
ID dme-mir-999 standard; RNA; DME; 105 BP.
XX
AC MI0005861;
XX
DE Drosophila melanogaster miR-999 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0020899"
FT /product="dme-miR-999-5p"
FT /evidence=not_experimental
FT miRNA 62..83
FT /accession="MIMAT0005519"
FT /product="dme-miR-999-3p"
FT /evidence=experimental
FT /experiment="454 [1-2], Illumina [2]"
XX
SQ Sequence 105 BP; 26 A; 25 C; 27 G; 0 T; 27 other;
aaggaugccg cucaauuacc ccgacauagu cauacgguga auguugugua uuggagacca 60
auguuaacug uaagacugug ucucgguggu ugccagccca gccac 105
//
ID dme-mir-1000 standard; RNA; DME; 100 BP.
XX
AC MI0005862;
XX
DE Drosophila melanogaster miR-1000 stem-loop
XX
RN [1]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [2]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0005520"
FT /product="dme-miR-1000-5p"
FT /evidence=experimental
FT /experiment="454 [1-2], Illumina [2]"
FT miRNA 60..81
FT /accession="MIMAT0020900"
FT /product="dme-miR-1000-3p"
FT /evidence=not_experimental
XX
SQ Sequence 100 BP; 24 A; 19 C; 23 G; 0 T; 34 other;
gacgcuugcc auugauauug uccugucaca gcaguauugu aacacuauau uauaguuuac 60
ugcugggucg gggcauuaac auuguugagc gucauuagca 100
//
ID dme-mir-1003 standard; RNA; DME; 56 BP.
XX
AC MI0005864;
XX
DE Drosophila melanogaster miR-1003 stem-loop
XX
RN [1]
RX PUBMED; 17589500.
RA Ruby JG, Jan CH, Bartel DP;
RT "Intronic microRNA precursors that bypass Drosha processing";
RL Nature. 448:83-86(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..22
FT /accession="MIMAT0020902"
FT /product="dme-miR-1003-5p"
FT /evidence=not_experimental
FT miRNA 35..56
FT /accession="MIMAT0005016"
FT /product="dme-miR-1003-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 56 BP; 9 A; 12 C; 16 G; 0 T; 19 other;
guggguaucu ggaugugguu ggcucuggcg guccucucac auuuacauau ucacag 56
//
ID dme-mir-1005 standard; RNA; DME; 61 BP.
XX
AC MI0005866;
XX
DE Drosophila melanogaster miR-1005 stem-loop
XX
RN [1]
RX PUBMED; 17589500.
RA Ruby JG, Jan CH, Bartel DP;
RT "Intronic microRNA precursors that bypass Drosha processing";
RL Nature. 448:83-86(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 41..61
FT /accession="MIMAT0005018"
FT /product="dme-miR-1005-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 61 BP; 16 A; 9 C; 15 G; 0 T; 21 other;
gugaguugau cgauuucgag guuuuggcac acgaauauaa ucuggaaucu uuaauucgca 60
g 61
//
ID dme-mir-1006 standard; RNA; DME; 64 BP.
XX
AC MI0005867;
XX
DE Drosophila melanogaster miR-1006 stem-loop
XX
RN [1]
RX PUBMED; 17589500.
RA Ruby JG, Jan CH, Bartel DP;
RT "Intronic microRNA precursors that bypass Drosha processing";
RL Nature. 448:83-86(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..26
FT /accession="MIMAT0020903"
FT /product="dme-miR-1006-5p"
FT /evidence=not_experimental
FT miRNA 42..64
FT /accession="MIMAT0005019"
FT /product="dme-miR-1006-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 64 BP; 20 A; 5 C; 12 G; 0 T; 27 other;
gugaguuuga aauugaaaug cguaaauugu uugguacaau uuaaauucga uuucuuauuc 60
auag 64
//
ID dme-mir-1007 standard; RNA; DME; 65 BP.
XX
AC MI0005868;
XX
DE Drosophila melanogaster miR-1007 stem-loop
XX
RN [1]
RX PUBMED; 17589500.
RA Ruby JG, Jan CH, Bartel DP;
RT "Intronic microRNA precursors that bypass Drosha processing";
RL Nature. 448:83-86(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..27
FT /accession="MIMAT0020904"
FT /product="dme-miR-1007-5p"
FT /evidence=not_experimental
FT miRNA 43..64
FT /accession="MIMAT0005020"
FT /product="dme-miR-1007-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 65 BP; 15 A; 11 C; 15 G; 0 T; 24 other;
guaagcagug uuugaacucg aucuugguuc uuggacucuu gauaagcuca auuaacuguu 60
ugcag 65
//
ID dme-mir-1008 standard; RNA; DME; 57 BP.
XX
AC MI0005869;
XX
DE Drosophila melanogaster miR-1008 stem-loop
XX
RN [1]
RX PUBMED; 17589500.
RA Ruby JG, Jan CH, Bartel DP;
RT "Intronic microRNA precursors that bypass Drosha processing";
RL Nature. 448:83-86(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..21
FT /accession="MIMAT0032028"
FT /product="dme-miR-1008-5p"
FT /evidence=not_experimental
FT miRNA 36..56
FT /accession="MIMAT0005021"
FT /product="dme-miR-1008-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 57 BP; 17 A; 9 C; 12 G; 0 T; 19 other;
guaaauaucu aaaguugaac uuggccaaug gcaagucaca gcuuuuugug uuuacag 57
//
ID dme-mir-1010 standard; RNA; DME; 71 BP.
XX
AC MI0005871;
XX
DE Drosophila melanogaster miR-1010 stem-loop
XX
RN [1]
RX PUBMED; 17589500.
RA Ruby JG, Jan CH, Bartel DP;
RT "Intronic microRNA precursors that bypass Drosha processing";
RL Nature. 448:83-86(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..21
FT /accession="MIMAT0020905"
FT /product="dme-miR-1010-5p"
FT /evidence=not_experimental
FT miRNA 48..71
FT /accession="MIMAT0005023"
FT /product="dme-miR-1010-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 71 BP; 20 A; 11 C; 14 G; 0 T; 26 other;
guaaguggug uagaugaaac aaauuuacca acaauuuugu uggauuguuu caccuaucgu 60
uccauuugca g 71
//
ID dme-mir-1012 standard; RNA; DME; 59 BP.
XX
AC MI0005873;
XX
DE Drosophila melanogaster miR-1012 stem-loop
XX
RN [1]
RX PUBMED; 17589500.
RA Ruby JG, Jan CH, Bartel DP;
RT "Intronic microRNA precursors that bypass Drosha processing";
RL Nature. 448:83-86(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..22
FT /accession="MIMAT0020906"
FT /product="dme-miR-1012-5p"
FT /evidence=not_experimental
FT miRNA 37..59
FT /accession="MIMAT0005025"
FT /product="dme-miR-1012-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 59 BP; 20 A; 7 C; 11 G; 0 T; 21 other;
guggguagaa cuuugauuaa uauugcuuga aaaauauuag ucaaagauuu uccccauag 59
//
ID dme-mir-1014 standard; RNA; DME; 68 BP.
XX
AC MI0005875;
XX
DE Drosophila melanogaster miR-1014 stem-loop
XX
RN [1]
RX PUBMED; 17589500.
RA Ruby JG, Jan CH, Bartel DP;
RT "Intronic microRNA precursors that bypass Drosha processing";
RL Nature. 448:83-86(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..23
FT /accession="MIMAT0020907"
FT /product="dme-miR-1014-5p"
FT /evidence=not_experimental
FT miRNA 48..68
FT /accession="MIMAT0005027"
FT /product="dme-miR-1014-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 68 BP; 21 A; 8 C; 15 G; 0 T; 24 other;
guauaaugga aauagauuuu aaucgcaggc gcgucagugg uugaauuaaa auucauuuuc 60
auuugcag 68
//
ID cel-mir-1020 standard; RNA; CEL; 70 BP.
XX
AC MI0005881;
XX
DE Caenorhabditis elegans miR-1020 stem-loop
XX
RN [1]
RX PUBMED; 17589500.
RA Ruby JG, Jan CH, Bartel DP;
RT "Intronic microRNA precursors that bypass Drosha processing";
RL Nature. 448:83-86(2007).
XX
RN [2]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [3]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..22
FT /accession="MIMAT0020356"
FT /product="cel-miR-1020-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 50..70
FT /accession="MIMAT0005033"
FT /product="cel-miR-1020-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2-3]"
XX
SQ Sequence 70 BP; 31 A; 9 C; 9 G; 0 T; 21 other;
guaaguguua cagaauaauc uuagacaaaa caacuaaaau uaaugaaaaa uuauucugug 60
acacuuucag 70
//
ID cel-mir-1022 standard; RNA; CEL; 88 BP.
XX
AC MI0005900;
XX
DE Caenorhabditis elegans miR-1022 stem-loop
XX
RN [1]
RX PUBMED; 17652138.
RA Gu SG, Pak J, Barberan-Soler S, Ali M, Fire A, Zahler AM;
RT "Distinct ribonucleoprotein reservoirs for microRNA and siRNA populations
RT in C. elegans";
RL RNA. 13:1492-1504(2007).
XX
RN [2]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [3]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [4]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0005523"
FT /product="cel-miR-1022-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2,4], CLIPseq [3]"
FT miRNA 54..77
FT /accession="MIMAT0020357"
FT /product="cel-miR-1022-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 88 BP; 29 A; 17 C; 20 G; 0 T; 22 other;
gguccaaaau cggcaagauc auuguuagga cgccaucuug aagcaauaua aagaugauag 60
uccaaugaug auccagcugu ucaaggcu 88
//
ID rno-mir-466c standard; RNA; RNO; 79 BP.
XX
AC MI0006114;
XX
DE Rattus norvegicus miR-466c stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314094; Mir466c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0005279"
FT /product="rno-miR-466c-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT miRNA 50..70
FT /accession="MIMAT0017287"
FT /product="rno-miR-466c-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 79 BP; 26 A; 13 C; 17 G; 0 T; 23 other;
caugugugua ugugaugugu guauguacau guguguauau gaagaaacau auacaugcac 60
acauacacac acacuggca 79
//
ID rno-mir-743b standard; RNA; RNO; 77 BP.
XX
AC MI0006115;
XX
DE Rattus norvegicus miR-743b stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314171; Mir743b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0017288"
FT /product="rno-miR-743b-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 46..67
FT /accession="MIMAT0005280"
FT /product="rno-miR-743b-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0005470"
XX
SQ Sequence 77 BP; 23 A; 13 C; 19 G; 0 T; 22 other;
ugcagugcug uguucagacu gguguccauc augugaaaua uuugugaaag acaccauacu 60
gaauagagua aggcuca 77
//
ID rno-mir-871 standard; RNA; RNO; 77 BP.
XX
AC MI0006116;
XX
DE Rattus norvegicus miR-871 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314095; Mir871.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..34
FT /accession="MIMAT0005281"
FT /product="rno-miR-871-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0005471"
FT miRNA 45..66
FT /accession="MIMAT0017289"
FT /product="rno-miR-871-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 77 BP; 21 A; 17 C; 18 G; 0 T; 21 other;
ugcagugccc uauucagauu ggugccgguc acaugaagua cauaugacug gcaccauacu 60
ggauaaugua augcuca 77
//
ID rno-mir-872 standard; RNA; RNO; 81 BP.
XX
AC MI0006117;
XX
DE Rattus norvegicus miR-872 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314260; Mir872.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0005282"
FT /product="rno-miR-872-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT miRNA 50..71
FT /accession="MIMAT0005283"
FT /product="rno-miR-872-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 81 BP; 19 A; 17 C; 15 G; 0 T; 30 other;
aacuuguuag aagguuacuu guuaguucag gaccucauua cuuucugccu gaacuauugc 60
aguagccucc uaacugguua u 81
//
ID rno-mir-874 standard; RNA; RNO; 76 BP.
XX
AC MI0006118;
XX
DE Rattus norvegicus miR-874 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314096; Mir874.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0017290"
FT /product="rno-miR-874-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 45..66
FT /accession="MIMAT0005284"
FT /product="rno-miR-874-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0005479"
XX
SQ Sequence 76 BP; 12 A; 28 C; 25 G; 0 T; 11 other;
uuagcccugc ggccccacgc accaggguaa gagagacucg cuuccugccc uggcccgagg 60
gaccgacugg cugggc 76
//
ID rno-mir-878 standard; RNA; RNO; 77 BP.
XX
AC MI0006120;
XX
DE Rattus norvegicus miR-878 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314098; Mir878.
XX
FH Key Location/Qualifiers
FH
FT miRNA 46..67
FT /accession="MIMAT0005286"
FT /product="rno-miR-878"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 77 BP; 19 A; 16 C; 22 G; 0 T; 20 other;
ugcagugcuu uaucuaguug gcugucaguc acgugaaacu caagugcaug acaccauacu 60
ggguagagga gggcuca 77
//
ID rno-mir-879 standard; RNA; RNO; 76 BP.
XX
AC MI0006121;
XX
DE Rattus norvegicus miR-879 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314261; Mir879.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0005287"
FT /product="rno-miR-879-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT miRNA 46..66
FT /accession="MIMAT0017291"
FT /product="rno-miR-879-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 76 BP; 19 A; 16 C; 20 G; 0 T; 21 other;
uucuagaucc agaggcuuau agcucuaagc cuuggauaaa agaggcuuau ggcuucaagc 60
uuucggagcu ggcgac 76
//
ID rno-mir-881 standard; RNA; RNO; 77 BP.
XX
AC MI0006123;
XX
DE Rattus norvegicus miR-881 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314203; Mir881.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..29
FT /accession="MIMAT0017293"
FT /product="rno-miR-881-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 45..66
FT /accession="MIMAT0005289"
FT /product="rno-miR-881-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0005474"
XX
SQ Sequence 77 BP; 24 A; 11 C; 16 G; 0 T; 26 other;
ugcaguacaa uauucagagu gguagcaguc acuuuauucu aaaguaacug uggcauuucu 60
gaauagagua auguuca 77
//
ID rno-mir-883 standard; RNA; RNO; 77 BP.
XX
AC MI0006126;
XX
DE Rattus norvegicus miR-883 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314099; Mir883.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..32
FT /accession="MIMAT0017294"
FT /product="rno-miR-883-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 46..67
FT /accession="MIMAT0005290"
FT /product="rno-miR-883-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0005476"
XX
SQ Sequence 77 BP; 22 A; 16 C; 14 G; 0 T; 25 other;
ugcacucaau gcugagagaa guagcaguua cuuuuuacuc uuaaguaacu gcaacaucuc 60
ucaguauugu aaggcuc 77
//
ID mmu-mir-582 standard; RNA; MMU; 81 BP.
XX
AC MI0006127;
XX
DE Mus musculus miR-582 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718550; Mir582.
DR ENTREZGENE; 100124489; Mir582.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0005291"
FT /product="mmu-miR-582-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT miRNA 47..67
FT /accession="MIMAT0005292"
FT /product="mmu-miR-582-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
XX
SQ Sequence 81 BP; 28 A; 17 C; 13 G; 0 T; 23 other;
acucuuugga uacaguuguu caaccaguua cuaaucuaac uaauuguaac cuguugaaca 60
acugaaccca aagggugcaa a 81
//
ID mmu-mir-467e standard; RNA; MMU; 87 BP.
XX
AC MI0006128;
XX
DE Mus musculus miR-467e stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3718541; Mir467e.
DR ENTREZGENE; 100124448; Mir467e.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0005293"
FT /product="mmu-miR-467e-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT miRNA 48..69
FT /accession="MIMAT0005294"
FT /product="mmu-miR-467e-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
XX
SQ Sequence 87 BP; 28 A; 17 C; 15 G; 0 T; 27 other;
gccugugugc auaaguguga gcauguauau guguguauau uuuaugcaua uacauacaca 60
caccuauaua cacaugcaca cagacau 87
//
ID rno-mir-17-2 standard; RNA; RNO; 78 BP.
XX
AC MI0006131;
XX
DE Rattus norvegicus miR-17-2 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314101; Mir17-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0000786"
FT /product="rno-miR-17-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT miRNA 47..69
FT /accession="MIMAT0017295"
FT /product="rno-miR-17-2-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 78 BP; 19 A; 19 C; 16 G; 0 T; 24 other;
uuggccaugu caaagugcuu acagugcagg uagcuucuug agaucuacug cacugcaagc 60
acuucuuaca uuaccaug 78
//
ID rno-mir-181d standard; RNA; RNO; 83 BP.
XX
AC MI0006132;
XX
DE Rattus norvegicus miR-181d stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314262; Mir181d.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0005299"
FT /product="rno-miR-181d-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT miRNA 53..72
FT /accession="MIMAT0017296"
FT /product="rno-miR-181d-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 83 BP; 19 A; 15 C; 29 G; 0 T; 20 other;
ggucacaauu aacauucauu guugucggug gguugugagg agaagaccag acccaccggg 60
ggaugaaugu cacuguggcu ggg 83
//
ID rno-mir-188 standard; RNA; RNO; 80 BP.
XX
AC MI0006134;
XX
DE Rattus norvegicus miR-188 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314102; Mir188.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0005301"
FT /product="rno-miR-188-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT miRNA 50..69
FT /accession="MIMAT0017297"
FT /product="rno-miR-188-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 80 BP; 15 A; 24 C; 22 G; 0 T; 19 other;
cccucucuca caucccuugc augguggagg gcgagcucuc ugaaaacucc ucccacaugc 60
aggguuugca ggauggugag 80
//
ID rno-mir-196c standard; RNA; RNO; 80 BP.
XX
AC MI0006136;
XX
DE Rattus norvegicus miR-196c stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314204; Mir196c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0005303"
FT /product="rno-miR-196c-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT miRNA 48..69
FT /accession="MIMAT0017299"
FT /product="rno-miR-196c-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 80 BP; 20 A; 19 C; 19 G; 0 T; 22 other;
cugagugaag uagguaguuu cguguuguug ggccuggcuu ucugaacaca acaacaccaa 60
accaccugau ucacugcagu 80
//
ID rno-mir-375 standard; RNA; RNO; 75 BP.
XX
AC MI0006140;
XX
DE Rattus norvegicus miR-375 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314263; Mir375.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..32
FT /accession="MIMAT0017301"
FT /product="rno-miR-375-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 45..66
FT /accession="MIMAT0005307"
FT /product="rno-miR-375-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 75 BP; 10 A; 27 C; 25 G; 0 T; 13 other;
uccggccccg cgacgagccc cucgcacaaa ccggaccuga gcguuuuguu cguucggcuc 60
gcgugaggca ggggc 75
//
ID rno-mir-380 standard; RNA; RNO; 77 BP.
XX
AC MI0006141;
XX
DE Rattus norvegicus miR-380 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314173; Mir380.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0005308"
FT /product="rno-miR-380-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT miRNA 47..67
FT /accession="MIMAT0017302"
FT /product="rno-miR-380-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 77 BP; 20 A; 17 C; 15 G; 0 T; 25 other;
accugaaaag augguugacc auagaacaug cgcuacuucu gugucguaug uaguaugguc 60
cacaucuucu cauuauc 77
//
ID rno-mir-384 standard; RNA; RNO; 83 BP.
XX
AC MI0006142;
XX
DE Rattus norvegicus miR-384 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314105; Mir384.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0005309"
FT /product="rno-miR-384-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT miRNA 52..73
FT /accession="MIMAT0005310"
FT /product="rno-miR-384-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
XX
SQ Sequence 83 BP; 29 A; 13 C; 15 G; 0 T; 26 other;
aaucaggaau uguaaacaau uccuaggcaa uguguauaau guugguaagu cauuccuaga 60
aauuguucac aaugccugua aca 83
//
ID rno-mir-410 standard; RNA; RNO; 76 BP.
XX
AC MI0006143;
XX
DE Rattus norvegicus miR-410 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314106; Mir410.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0017303"
FT /product="rno-miR-410-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 46..66
FT /accession="MIMAT0005311"
FT /product="rno-miR-410-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 76 BP; 21 A; 12 C; 18 G; 0 T; 25 other;
acuugaggag agguugucug ugaugaguuc gcuuuauuaa ugacgaauau aacacagaug 60
gccuguuuuc aauacc 76
//
ID rno-mir-411 standard; RNA; RNO; 76 BP.
XX
AC MI0006144;
XX
DE Rattus norvegicus miR-411 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314107; Mir411.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0005312"
FT /product="rno-miR-411-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT miRNA 46..65
FT /accession="MIMAT0017304"
FT /product="rno-miR-411-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 76 BP; 20 A; 18 C; 17 G; 0 T; 21 other;
cuuggagaga uaguagaccg uauagcguac gcuuuaucug ugacguaugu aacacggucc 60
acuaacccuc aguauc 76
//
ID rno-mir-423 standard; RNA; RNO; 79 BP.
XX
AC MI0006145;
XX
DE Rattus norvegicus miR-423 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314264; Mir423.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..34
FT /accession="MIMAT0017305"
FT /product="rno-miR-423-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 47..69
FT /accession="MIMAT0005313"
FT /product="rno-miR-423-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 79 BP; 16 A; 19 C; 22 G; 0 T; 22 other;
gaaguuaggc ugaggggcag agagcgagac uuuucuauuu uccaaaagcu cggucugagg 60
ccccucaguc uugcuuccu 79
//
ID rno-mir-425 standard; RNA; RNO; 83 BP.
XX
AC MI0006146;
XX
DE Rattus norvegicus miR-425 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314108; Mir425.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0005314"
FT /product="rno-miR-425-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT miRNA 52..72
FT /accession="MIMAT0017306"
FT /product="rno-miR-425-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 83 BP; 18 A; 23 C; 22 G; 0 T; 20 other;
agugcuuugg aaugacacga ucacucccgu ugagugggca cccaagaagc caucgggaau 60
aucguguccg cccagugcuc uuu 83
//
ID rno-mir-434-1 standard; RNA; RNO; 81 BP.
XX
AC MI0006147;
XX
DE Rattus norvegicus miR-434-1 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314174; Mir434.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..34
FT /accession="MIMAT0017307"
FT /product="rno-miR-434-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 50..71
FT /accession="MIMAT0005315"
FT /product="rno-miR-434-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 81 BP; 19 A; 21 C; 16 G; 0 T; 25 other;
guuugaacca cagcucgacu caugguuuga accauuguca aacucguggu uugaaccauc 60
acucgacucc ugguuugaau c 81
//
ID rno-mir-455 standard; RNA; RNO; 78 BP.
XX
AC MI0006148;
XX
DE Rattus norvegicus miR-455 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314205; Mir455.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0005316"
FT /product="rno-miR-455-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT miRNA 48..69
FT /accession="MIMAT0017308"
FT /product="rno-miR-455-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 78 BP; 17 A; 21 C; 22 G; 0 T; 18 other;
ggugugagcg uaugugccuu uggacuacau cguggacgca gcaccaugca guccacgggc 60
auauacacuu gccucaag 78
//
ID rno-mir-463 standard; RNA; RNO; 78 BP.
XX
AC MI0006149;
XX
DE Rattus norvegicus miR-463 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314109; Mir463.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0017309"
FT /product="rno-miR-463-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 47..68
FT /accession="MIMAT0005317"
FT /product="rno-miR-463-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 78 BP; 22 A; 13 C; 17 G; 0 T; 26 other;
acccuguuuu accuaauuug uuguccauca uguaaaauuu aagugaugau agacgccaau 60
uuggguagag gaaggcuc 78
//
ID rno-mir-471 standard; RNA; RNO; 78 BP.
XX
AC MI0006150;
XX
DE Rattus norvegicus miR-471 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314110; Mir471.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0005318"
FT /product="rno-miR-471-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT miRNA 46..65
FT /accession="MIMAT0017310"
FT /product="rno-miR-471-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 78 BP; 26 A; 13 C; 17 G; 0 T; 22 other;
agcagugcuu uacguaguau agugcuuuuc acauuacaca aaaagugaaa ggugccauac 60
uauguacagg aaggcuua 78
//
ID rno-mir-500 standard; RNA; RNO; 80 BP.
XX
AC MI0006153;
XX
DE Rattus norvegicus miR-500 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314112; Mir500.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..34
FT /accession="MIMAT0017311"
FT /product="rno-miR-500-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 49..70
FT /accession="MIMAT0005321"
FT /product="rno-miR-500-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 80 BP; 17 A; 21 C; 20 G; 0 T; 22 other;
cccccucucu aauccuugcu aucugggugc uuagugcuau cucaaugcaa ugcaccuggg 60
caaggguuca gagaagguga 80
//
ID rno-mir-532 standard; RNA; RNO; 79 BP.
XX
AC MI0006154;
XX
DE Rattus norvegicus miR-532 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314265; Mir532.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0005322"
FT /product="rno-miR-532-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT miRNA 48..69
FT /accession="MIMAT0005323"
FT /product="rno-miR-532-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 79 BP; 18 A; 22 C; 16 G; 0 T; 23 other;
uuuucucuuc caugccuuga guguaggacu guugacaucu uaauuacccu cccacaccca 60
aggcuugcag gagagcaag 79
//
ID rno-mir-598-1 standard; RNA; RNO; 79 BP.
XX
AC MI0006155;
XX
DE Rattus norvegicus miR-598-1 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314206; Mir598.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0005324"
FT /product="rno-miR-598-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT miRNA 48..69
FT /accession="MIMAT0005325"
FT /product="rno-miR-598-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 79 BP; 15 A; 18 C; 24 G; 0 T; 22 other;
gcugaugcug gcggugaugc cgauggugcg agcugaaaau gggcugcuac gucaucgucg 60
ucaucguuau caucaucau 79
//
ID rno-mir-671 standard; RNA; RNO; 81 BP.
XX
AC MI0006156;
XX
DE Rattus norvegicus miR-671 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR ENTREZGENE; 100314113; Mir671.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..70
FT /accession="MIMAT0005326"
FT /product="rno-miR-671"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 81 BP; 14 A; 20 C; 29 G; 0 T; 18 other;
caggaagagg aggaagcccu ggaggggcug gaggugaugg auguuuuccu ccgguucuca 60
gggcuccacc ucuuucgagc c 81
//
ID rno-mir-672 standard; RNA; RNO; 80 BP.
XX
AC MI0006157;
XX
DE Rattus norvegicus miR-672 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314175; Mir672.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0005327"
FT /product="rno-miR-672-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT miRNA 49..69
FT /accession="MIMAT0017312"
FT /product="rno-miR-672-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 80 BP; 18 A; 13 C; 21 G; 0 T; 28 other;
ccuuuaguuu ugagguuggu guacugugug ugaguauaca uauuuaucac acacagucgc 60
caucuucgaa agugagggug 80
//
ID rno-mir-673 standard; RNA; RNO; 83 BP.
XX
AC MI0006158;
XX
DE Rattus norvegicus miR-673 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314114; Mir673.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0005328"
FT /product="rno-miR-673-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT miRNA 51..72
FT /accession="MIMAT0017313"
FT /product="rno-miR-673-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 83 BP; 13 A; 28 C; 24 G; 0 T; 18 other;
gccugagggg cucacagcuc cgguccuugg agcuccagag aaaauguugc uccgggacug 60
aguucugugc accccccuug ccc 83
//
ID rno-mir-674 standard; RNA; RNO; 77 BP.
XX
AC MI0006159;
XX
DE Rattus norvegicus miR-674 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314115; Mir674.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0005329"
FT /product="rno-miR-674-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT miRNA 46..67
FT /accession="MIMAT0005330"
FT /product="rno-miR-674-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 77 BP; 17 A; 19 C; 25 G; 0 T; 16 other;
ccugagccuu gcacugagau gggaguggug uaaggcucag guaugcacag cucccaucuc 60
agaacaaggc ucgggug 77
//
ID rno-mir-708 standard; RNA; RNO; 88 BP.
XX
AC MI0006160;
XX
DE Rattus norvegicus miR-708 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314266; Mir708.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0005331"
FT /product="rno-miR-708-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT miRNA 57..78
FT /accession="MIMAT0005332"
FT /product="rno-miR-708-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 88 BP; 23 A; 19 C; 27 G; 0 T; 19 other;
gacugcccuc aaggagcuua caaucuagcu ggggguagau gacuugcacu ugaacacaac 60
uagacuguga gcuucuagag ggcagggg 88
//
ID rno-mir-742 standard; RNA; RNO; 77 BP.
XX
AC MI0006161;
XX
DE Rattus norvegicus miR-742 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314116; Mir742.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0017314"
FT /product="rno-miR-742-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 46..67
FT /accession="MIMAT0005333"
FT /product="rno-miR-742-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 77 BP; 24 A; 14 C; 19 G; 0 T; 20 other;
ggcagugcuu uacucacaug guugcuaauc acgugaaaug uaagugaaag ccaccauguu 60
ggguaaagua aagcuca 77
//
ID rno-mir-743a standard; RNA; RNO; 76 BP.
XX
AC MI0006162;
XX
DE Rattus norvegicus miR-743a stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314117; Mir743a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0017315"
FT /product="rno-miR-743a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 45..66
FT /accession="MIMAT0005334"
FT /product="rno-miR-743a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 76 BP; 21 A; 12 C; 22 G; 0 T; 21 other;
ugcagugcug uauucagauu ggugccuguc auguuuauaa gaaugaaaga cgccaaacug 60
gguagagugg agcuca 76
//
ID rno-mir-760 standard; RNA; RNO; 80 BP.
XX
AC MI0006164;
XX
DE Rattus norvegicus miR-760 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314118; Mir760.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0005336"
FT /product="rno-miR-760-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT miRNA 49..68
FT /accession="MIMAT0005337"
FT /product="rno-miR-760-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 80 BP; 16 A; 27 C; 25 G; 0 T; 12 other;
ggcgcgucgc cccccucagg ccaccagagc ccggauaccu cagaaauucg gcucuggguc 60
uguggggagc gaaaugcaac 80
//
ID rno-mir-770 standard; RNA; RNO; 76 BP.
XX
AC MI0006165;
XX
DE Rattus norvegicus miR-770 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314207; Mir770.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0005338"
FT /product="rno-miR-770-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT miRNA 46..62
FT /accession="MIMAT0017317"
FT /product="rno-miR-770-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 76 BP; 11 A; 26 C; 29 G; 0 T; 10 other;
cugugccccc agcaccacgu gucugggcca cgugagcaac gccacguggg ccugacgugg 60
agcuggggcc gcaggg 76
//
ID rno-mir-873 standard; RNA; RNO; 77 BP.
XX
AC MI0006166;
XX
DE Rattus norvegicus miR-873 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314267; Mir873.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0005339"
FT /product="rno-miR-873-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT miRNA 47..67
FT /accession="MIMAT0017318"
FT /product="rno-miR-873-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 77 BP; 23 A; 17 C; 20 G; 0 T; 17 other;
gugugcauuu gcaggaacuu gugagucucc uauugaaaau ggacaggaga cugacaaguu 60
cccgggaaca cccacaa 77
//
ID rno-mir-92b standard; RNA; RNO; 83 BP.
XX
AC MI0006167;
XX
DE Rattus norvegicus miR-92b stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314119; Mir92b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..34
FT /accession="MIMAT0017319"
FT /product="rno-miR-92b-5p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
FT miRNA 52..73
FT /accession="MIMAT0005340"
FT /product="rno-miR-92b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
XX
SQ Sequence 83 BP; 9 A; 28 C; 28 G; 0 T; 18 other;
ggugggcagg agggacggga cgcggugcag uguuguucuu uccccugcca auauugcacu 60
cgucccggcc uccggccccc ucg 83
//
ID rno-mir-488 standard; RNA; RNO; 79 BP.
XX
AC MI0006168;
XX
DE Rattus norvegicus miR-488 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314120; Mir488.
XX
CC The predominant miRNA cloned by Landgraf et al. has a 3' additional U
CC residue, which is incompatible with the genome sequence [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0017320"
FT /product="rno-miR-488-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 49..69
FT /accession="MIMAT0005341"
FT /product="rno-miR-488-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 79 BP; 21 A; 19 C; 13 G; 0 T; 26 other;
aauccucucu cccagauaau ggcacucuca aacaaguuuc uacauuguuu gaaaggcugu 60
uucuugguca gaagacucu 79
//
ID rno-mir-652 standard; RNA; RNO; 81 BP.
XX
AC MI0006169;
XX
DE Rattus norvegicus miR-652 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314177; Mir652.
XX
CC The predominant miRNA cloned by Landgraf et al. has a 3' additional U
CC residue, which is incompatible with the genome sequence [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..32
FT /accession="MIMAT0017321"
FT /product="rno-miR-652-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 51..71
FT /accession="MIMAT0005342"
FT /product="rno-miR-652-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 81 BP; 23 A; 18 C; 22 G; 0 T; 18 other;
augcacugca caacccuagg agggggugcc auucacauag acuauaauug aauggcgcca 60
cuaggguugu gcaguguaca a 81
//
ID tae-MIR159a standard; RNA; TAE; 177 BP.
XX
AC MI0006170;
XX
DE Triticum aestivum miR159a stem-loop
XX
RN [1]
RX PUBMED; 17543110.
RA Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q;
RT "Cloning and characterization of microRNAs from wheat (Triticum aestivum
RT L.)";
RL Genome Biol. 8:R96(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 154..174
FT /accession="MIMAT0005343"
FT /product="tae-miR159a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 177 BP; 35 A; 42 C; 49 G; 0 T; 51 other;
guggagcucc uaucauucca augaaggguc uaccgaaggg uuugugcagc ugcuuguuca 60
ugguucccac uauccuaucu ccauuagaau acgaggagau aggcuugugg uuugcaugac 120
cgaggagccg cuucgauccc ucgcugaccg cuguuuggau ugaagggagc ucugcau 177
//
ID tae-MIR171a standard; RNA; TAE; 130 BP.
XX
AC MI0006175;
XX
DE Triticum aestivum miR171a stem-loop
XX
RN [1]
RX PUBMED; 17543110.
RA Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q;
RT "Cloning and characterization of microRNAs from wheat (Triticum aestivum
RT L.)";
RL Genome Biol. 8:R96(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 89..109
FT /accession="MIMAT0005348"
FT /product="tae-miR171a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 130 BP; 22 A; 38 C; 36 G; 0 T; 34 other;
uggaaugguc acuaugaugu uggcucgacu cacucagacc acgccugccg gccggccgua 60
gccaugcauc ugcaugcggu gguggcucug auugagccgu gccaauaucu cagugcucuu 120
ucaugcaugc 130
//
ID hsa-mir-1180 standard; RNA; HSA; 69 BP.
XX
AC MI0006273;
XX
DE Homo sapiens miR-1180 stem-loop
XX
RN [1]
RX PUBMED; 17922033.
RA Subramanian S, Lui WO, Lee CH, Espinosa I, Nielsen TO, Heinrich MC,
RA Corless CL, Fire AZ, van de Rijn M;
RT "MicroRNA expression signature of human sarcomas";
RL Oncogene. 27:2015-2026(2008).
XX
RN [2]
RX PUBMED; 19508715.
RA Nygaard S, Jacobsen A, Lindow M, Eriksen J, Balslev E, Flyger H, Tolstrup
RA N, Moller S, Krogh A, Litman T;
RT "Identification and analysis of miRNAs in human breast cancer and teratoma
RT samples using deep sequencing";
RL BMC Med Genomics. 2:35(2009).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 35261; MIR1180.
DR ENTREZGENE; 100302256; MIR1180.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..27
FT /accession="MIMAT0026735"
FT /product="hsa-miR-1180-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 41..62
FT /accession="MIMAT0005825"
FT /product="hsa-miR-1180-3p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2], Illumina [3]"
XX
SQ Sequence 69 BP; 5 A; 21 C; 27 G; 0 T; 16 other;
gcugcuggac ccacccggcc gggaauagug cuccugguug uuuccggcuc gcgugggugu 60
gucggcggc 69
//
ID mmu-mir-466l standard; RNA; MMU; 121 BP.
XX
AC MI0006278;
XX
DE Mus musculus miR-466l stem-loop
XX
RN [1]
RX PUBMED; 17989215.
RA Calabrese JM, Seila AC, Yeo GW, Sharp PA;
RT "RNA sequence analysis defines Dicer's role in mouse embryonic stem
RT cells";
RL Proc Natl Acad Sci U S A. 104:18097-18102(2007).
XX
RN [2]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3783378; Mir466l.
DR ENTREZGENE; 100316769; Mir466l.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0017322"
FT /product="mmu-miR-466l-5p"
FT /evidence=experimental
FT /experiment="454 [2], Illumina [3]"
FT miRNA 60..81
FT /accession="MIMAT0005830"
FT /product="mmu-miR-466l-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [3]"
XX
SQ Sequence 121 BP; 38 A; 22 C; 19 G; 0 T; 42 other;
cuauguaugu gcaugugugu uuguguguac auguacaugu auauauauau ugauauacau 60
auaaauacau gcacacauau ucaugcaugc acacgcacac auuaauggca cucuuagauc 120
c 121
//
ID mmu-mir-669d standard; RNA; MMU; 121 BP.
XX
AC MI0006281;
XX
DE Mus musculus miR-669d stem-loop
XX
RN [1]
RX PUBMED; 17989215.
RA Calabrese JM, Seila AC, Yeo GW, Sharp PA;
RT "RNA sequence analysis defines Dicer's role in mouse embryonic stem
RT cells";
RL Proc Natl Acad Sci U S A. 104:18097-18102(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3783382; Mir669d.
DR ENTREZGENE; 100316664; Mir669d.
XX
FH Key Location/Qualifiers
FH
FT miRNA 42..63
FT /accession="MIMAT0005833"
FT /product="mmu-miR-669d-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2,4]"
FT miRNA 81..101
FT /accession="MIMAT0017324"
FT /product="mmu-miR-669d-3p"
FT /evidence=experimental
FT /experiment="454 [3], Illumina [4]"
XX
SQ Sequence 121 BP; 32 A; 25 C; 24 G; 0 T; 40 other;
cagcccggga uuuguguguu gcuugcucua uaugugugua uacuugugug ugcauguaua 60
uguguguaua ugaauauaca uauacauaca cacccauaua cacacgcaug caugcacaca 120
c 121
//
ID mmu-mir-1b standard; RNA; MMU; 122 BP.
XX
AC MI0006283;
XX
DE Mus musculus miR-1b stem-loop
XX
RN [1]
RX PUBMED; 17989215.
RA Calabrese JM, Seila AC, Yeo GW, Sharp PA;
RT "RNA sequence analysis defines Dicer's role in mouse embryonic stem
RT cells";
RL Proc Natl Acad Sci U S A. 104:18097-18102(2007).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100316783; Mir1b.
XX
CC Calabrese et al. report the detection of mature products from the
CC antisense strand of mouse mir-1-2, at lower abundance than sense miR-1
CC [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 41..61
FT /accession="MIMAT0005835"
FT /product="mmu-miR-1b-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 80..102
FT /accession="MIMAT0017326"
FT /product="mmu-miR-1b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 122 BP; 32 A; 29 C; 21 G; 0 T; 40 other;
uuccuuuagc uucuucuugg cggacauuac cuacccaaaa uacauacuuc uuuacauucc 60
auagcacuga auguucauau ggguacauaa agaaguaugu gcucugagua ggcacuccug 120
cg 122
//
ID mmu-mir-669f standard; RNA; MMU; 121 BP.
XX
AC MI0006287;
XX
DE Mus musculus miR-669f stem-loop
XX
RN [1]
RX PUBMED; 17989215.
RA Calabrese JM, Seila AC, Yeo GW, Sharp PA;
RT "RNA sequence analysis defines Dicer's role in mouse embryonic stem
RT cells";
RL Proc Natl Acad Sci U S A. 104:18097-18102(2007).
XX
RN [2]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3783384; Mir669f.
DR ENTREZGENE; 100316667; Mir669f.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..43
FT /accession="MIMAT0017327"
FT /product="mmu-miR-669f-5p"
FT /evidence=experimental
FT /experiment="454 [2], Illumina [3]"
FT miRNA 57..79
FT /accession="MIMAT0005839"
FT /product="mmu-miR-669f-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [3]"
XX
SQ Sequence 121 BP; 39 A; 22 C; 27 G; 0 T; 33 other;
uguaugugcc uguguguaua guugugugug caugugcaug uguguauaug aauauacaua 60
uacauacaca cacacguaua aacgcaagca caaacacaca cagaggaaug gcacucguug 120
a 121
//
ID mmu-mir-1193 standard; RNA; MMU; 121 BP.
XX
AC MI0006298;
XX
DE Mus musculus miR-1193 stem-loop
XX
RN [1]
RX PUBMED; 17989215.
RA Calabrese JM, Seila AC, Yeo GW, Sharp PA;
RT "RNA sequence analysis defines Dicer's role in mouse embryonic stem
RT cells";
RL Proc Natl Acad Sci U S A. 104:18097-18102(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3783366; Mir1193.
DR ENTREZGENE; 100316673; Mir1193.
XX
FH Key Location/Qualifiers
FH
FT miRNA 46..65
FT /accession="MIMAT0017329"
FT /product="mmu-miR-1193-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 80..100
FT /accession="MIMAT0005851"
FT /product="mmu-miR-1193-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2-3]"
XX
SQ Sequence 121 BP; 27 A; 32 C; 30 G; 0 T; 32 other;
cugaagggac aaugaugccc acuguucucg ggguagcugu guggauggua gaccggugac 60
guacacuuca uuuaugcugu aggucacccg uuuuacuauc caccaacacc cagaccaucu 120
g 121
//
ID mmu-mir-669e standard; RNA; MMU; 119 BP.
XX
AC MI0006300;
XX
DE Mus musculus miR-669e stem-loop
XX
RN [1]
RX PUBMED; 17989215.
RA Calabrese JM, Seila AC, Yeo GW, Sharp PA;
RT "RNA sequence analysis defines Dicer's role in mouse embryonic stem
RT cells";
RL Proc Natl Acad Sci U S A. 104:18097-18102(2007).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3783383; Mir669e.
DR ENTREZGENE; 100316806; Mir669e.
XX
FH Key Location/Qualifiers
FH
FT miRNA 43..64
FT /accession="MIMAT0005853"
FT /product="mmu-miR-669e-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 80..100
FT /accession="MIMAT0017330"
FT /product="mmu-miR-669e-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 119 BP; 31 A; 25 C; 26 G; 0 T; 37 other;
gccugggauu caugggcugu acccuauaua ugggcaggug ugugucuugu gugugcaugu 60
ucauuugugu auaugaauau gaauauacac acacuuacac acucaugcac acacacaca 119
//
ID mmu-mir-1197 standard; RNA; MMU; 120 BP.
XX
AC MI0006305;
XX
DE Mus musculus miR-1197 stem-loop
XX
RN [1]
RX PUBMED; 17989215.
RA Calabrese JM, Seila AC, Yeo GW, Sharp PA;
RT "RNA sequence analysis defines Dicer's role in mouse embryonic stem
RT cells";
RL Proc Natl Acad Sci U S A. 104:18097-18102(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3783370; Mir1197.
DR ENTREZGENE; 100316751; Mir1197.
XX
FH Key Location/Qualifiers
FH
FT miRNA 45..65
FT /accession="MIMAT0017331"
FT /product="mmu-miR-1197-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 80..100
FT /accession="MIMAT0005858"
FT /product="mmu-miR-1197-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2-3]"
XX
SQ Sequence 120 BP; 28 A; 27 C; 28 G; 0 T; 37 other;
gugagcugga aucagccagc guuaccucaa gguauuugaa gaugcgguug accauggugu 60
guacgcuuua uuuaugacgu aggacacaug gucuacuucu ucucaauauc acaucucgcc 120
//
ID mmu-mir-1198 standard; RNA; MMU; 121 BP.
XX
AC MI0006306;
XX
DE Mus musculus miR-1198 stem-loop
XX
RN [1]
RX PUBMED; 17989215.
RA Calabrese JM, Seila AC, Yeo GW, Sharp PA;
RT "RNA sequence analysis defines Dicer's role in mouse embryonic stem
RT cells";
RL Proc Natl Acad Sci U S A. 104:18097-18102(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3783371; Mir1198.
DR ENTREZGENE; 100316807; Mir1198.
XX
FH Key Location/Qualifiers
FH
FT miRNA 42..63
FT /accession="MIMAT0005859"
FT /product="mmu-miR-1198-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2-3]"
FT miRNA 80..101
FT /accession="MIMAT0017332"
FT /product="mmu-miR-1198-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 121 BP; 16 A; 26 C; 25 G; 0 T; 54 other;
uuuuuuuucu uuuguuuauu uuguuuguga caguugucug uuauguguuc cuggcuggcu 60
ugguacucau guguagccca agcuagccuc uaacucaugg cagucauccu gucucagucu 120
c 121
//
ID mmu-mir-1199 standard; RNA; MMU; 119 BP.
XX
AC MI0006307;
XX
DE Mus musculus miR-1199 stem-loop
XX
RN [1]
RX PUBMED; 17989215.
RA Calabrese JM, Seila AC, Yeo GW, Sharp PA;
RT "RNA sequence analysis defines Dicer's role in mouse embryonic stem
RT cells";
RL Proc Natl Acad Sci U S A. 104:18097-18102(2007).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3783372; Mir1199.
DR ENTREZGENE; 100316677; Mir1199.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..40
FT /accession="MIMAT0005860"
FT /product="mmu-miR-1199-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 65..85
FT /accession="MIMAT0017333"
FT /product="mmu-miR-1199-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 119 BP; 11 A; 42 C; 47 G; 0 T; 19 other;
agccugcgcc ggagccgggg ucugaguccc ggucgcgcgg gcgaggaacu cauugaguug 60
cgcgugcggc cggugcucag ucggcccggc uccgguacuc cgcugccgcg cgcccugga 119
//
ID rno-mir-146b standard; RNA; RNO; 88 BP.
XX
AC MI0006342;
XX
DE Rattus norvegicus miR-146b stem-loop
XX
RN [1]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314121; Mir146b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0005595"
FT /product="rno-miR-146b-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT miRNA 55..75
FT /accession="MIMAT0017334"
FT /product="rno-miR-146b-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 88 BP; 17 A; 24 C; 25 G; 0 T; 22 other;
uggccaccug gcccugagaa cugaauucca uaggcuguga acucuagcag augcccuagg 60
gacucaguuc uggugccugg cugugcua 88
//
ID rno-mir-551b standard; RNA; RNO; 98 BP.
XX
AC MI0006343;
XX
DE Rattus norvegicus miR-551b stem-loop
XX
RN [1]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314268; Mir551b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..40
FT /accession="MIMAT0017335"
FT /product="rno-miR-551b-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 56..78
FT /accession="MIMAT0005596"
FT /product="rno-miR-551b-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 98 BP; 24 A; 21 C; 29 G; 0 T; 24 other;
gugcucuugu ggcccaugaa aucaagcuug ggugagaccu gguacagaac aggaaggcga 60
cccauacuug guuucagugg cugcaagaau ggcucuau 98
//
ID hsa-mir-548e standard; RNA; HSA; 88 BP.
XX
AC MI0006344;
XX
DE Homo sapiens miR-548e stem-loop
XX
RN [1]
RX PUBMED; 18285502.
RA Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL,
RA Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA;
RT "Application of massively parallel sequencing to microRNA profiling and
RT discovery in human embryonic stem cells";
RL Genome Res. 18:610-621(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 35275; MIR548E.
DR ENTREZGENE; 100313921; MIR548E.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0026736"
FT /product="hsa-miR-548e-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 53..74
FT /accession="MIMAT0005874"
FT /product="hsa-miR-548e-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
XX
SQ Sequence 88 BP; 29 A; 15 C; 16 G; 0 T; 28 other;
uuauuagguu gguacaaaag caaucgcggu uuuugcuauu acuuuuaaag gcaaaaacug 60
agacuacuuu ugcaccaacc ugauagaa 88
//
ID hsa-mir-548j standard; RNA; HSA; 112 BP.
XX
AC MI0006345;
XX
DE Homo sapiens miR-548j stem-loop
XX
RN [1]
RX PUBMED; 18285502.
RA Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL,
RA Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA;
RT "Application of massively parallel sequencing to microRNA profiling and
RT discovery in human embryonic stem cells";
RL Genome Res. 18:610-621(2008).
XX
RN [2]
RX PUBMED; 23226537.
RA Ple H, Landry P, Benham A, Coarfa C, Gunaratne PH, Provost P;
RT "The repertoire and features of human platelet microRNAs";
RL PLoS One. 7:e50746(2012).
XX
DR HGNC; 35276; MIR548J.
DR ENTREZGENE; 100313914; MIR548J.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..50
FT /accession="MIMAT0005875"
FT /product="hsa-miR-548j-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 65..85
FT /accession="MIMAT0026737"
FT /product="hsa-miR-548j-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 112 BP; 30 A; 22 C; 28 G; 0 T; 32 other;
gggcagccag ugaauaguua gcuggugcaa aaguaauugc ggucuuuggu auuacuuuca 60
guggcaaaaa cugcauuacu uuugcaccag ccuacuagaa cgcugaguuc ag 112
//
ID hsa-mir-1287 standard; RNA; HSA; 90 BP.
XX
AC MI0006349;
XX
DE Homo sapiens miR-1287 stem-loop
XX
RN [1]
RX PUBMED; 18285502.
RA Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL,
RA Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA;
RT "Application of massively parallel sequencing to microRNA profiling and
RT discovery in human embryonic stem cells";
RL Genome Res. 18:610-621(2008).
XX
RN [2]
RX PUBMED; 19508715.
RA Nygaard S, Jacobsen A, Lindow M, Eriksen J, Balslev E, Flyger H, Tolstrup
RA N, Moller S, Krogh A, Litman T;
RT "Identification and analysis of miRNAs in human breast cancer and teratoma
RT samples using deep sequencing";
RL BMC Med Genomics. 2:35(2009).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 35280; MIR1287.
DR ENTREZGENE; 100302133; MIR1287.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0005878"
FT /product="hsa-miR-1287-5p"
FT /evidence=experimental
FT /experiment="Illumina [1,3], 454 [2]"
FT miRNA 55..76
FT /accession="MIMAT0026738"
FT /product="hsa-miR-1287-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 90 BP; 21 A; 20 C; 26 G; 0 T; 23 other;
guugugcugu ccaggugcug gaucaguggu ucgagucuga gccuuuaaaa gccacucuag 60
ccacagaugc agugauugga gccaugacaa 90
//
ID hsa-mir-1304 standard; RNA; HSA; 91 BP.
XX
AC MI0006371;
XX
DE Homo sapiens miR-1304 stem-loop
XX
RN [1]
RX PUBMED; 18285502.
RA Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL,
RA Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA;
RT "Application of massively parallel sequencing to microRNA profiling and
RT discovery in human embryonic stem cells";
RL Genome Res. 18:610-621(2008).
XX
DR HGNC; 35302; MIR1304.
DR ENTREZGENE; 100302240; MIR1304.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0005892"
FT /product="hsa-miR-1304-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 53..74
FT /accession="MIMAT0022720"
FT /product="hsa-miR-1304-3p"
FT /evidence=not_experimental
XX
SQ Sequence 91 BP; 22 A; 26 C; 22 G; 0 T; 21 other;
aaacacuuga gcccagcggu uugaggcuac agugagaugu gauccugcca caucucacug 60
uagccucgaa ccccugggcu caagugauuc a 91
//
ID hsa-mir-1245a standard; RNA; HSA; 70 BP.
XX
AC MI0006380;
XX
DE Homo sapiens miR-1245a stem-loop
XX
RN [1]
RX PUBMED; 18285502.
RA Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL,
RA Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA;
RT "Application of massively parallel sequencing to microRNA profiling and
RT discovery in human embryonic stem cells";
RL Genome Res. 18:610-621(2008).
XX
DR HGNC; 35311; MIR1245.
DR ENTREZGENE; 100302219; MIR1245.
XX
FH Key Location/Qualifiers
FH
FT miRNA 45..65
FT /accession="MIMAT0005897"
FT /product="hsa-miR-1245a"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 70 BP; 23 A; 10 C; 11 G; 0 T; 26 other;
auuuauguau aggccuuuag aucaucugau guugaauacu cuuuaaguga ucuaaaggcc 60
uacauauaaa 70
//
ID hsa-mir-1247 standard; RNA; HSA; 136 BP.
XX
AC MI0006382;
XX
DE Homo sapiens miR-1247 stem-loop
XX
RN [1]
RX PUBMED; 18285502.
RA Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL,
RA Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA;
RT "Application of massively parallel sequencing to microRNA profiling and
RT discovery in human embryonic stem cells";
RL Genome Res. 18:610-621(2008).
XX
DR HGNC; 35313; MIR1247.
DR ENTREZGENE; 100302145; MIR1247.
XX
FH Key Location/Qualifiers
FH
FT miRNA 40..61
FT /accession="MIMAT0005899"
FT /product="hsa-miR-1247-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 74..97
FT /accession="MIMAT0022721"
FT /product="hsa-miR-1247-3p"
FT /evidence=not_experimental
XX
SQ Sequence 136 BP; 17 A; 59 C; 42 G; 0 T; 18 other;
ccgcuugccu cgcccagcgc agccccggcc gcugggcgca cccgucccgu ucguccccgg 60
acguugcucu cuaccccggg aacgucgaga cuggagcgcc cgaacugagc caccuucgcg 120
gaccccgaga gcggcg 136
//
ID hsa-mir-1249 standard; RNA; HSA; 66 BP.
XX
AC MI0006384;
XX
DE Homo sapiens miR-1249 stem-loop
XX
RN [1]
RX PUBMED; 18285502.
RA Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL,
RA Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA;
RT "Application of massively parallel sequencing to microRNA profiling and
RT discovery in human embryonic stem cells";
RL Genome Res. 18:610-621(2008).
XX
DR HGNC; 35315; MIR1249.
DR ENTREZGENE; 100302149; MIR1249.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..27
FT /accession="MIMAT0032029"
FT /product="hsa-miR-1249-5p"
FT /evidence=not_experimental
FT miRNA 41..62
FT /accession="MIMAT0005901"
FT /product="hsa-miR-1249-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 66 BP; 10 A; 22 C; 21 G; 0 T; 13 other;
gggaggaggg aggagauggg ccaaguuccc ucuggcugga acgcccuucc cccccuucuu 60
caccug 66
//
ID hsa-mir-548g standard; RNA; HSA; 89 BP.
XX
AC MI0006395;
XX
DE Homo sapiens miR-548g stem-loop
XX
RN [1]
RX PUBMED; 18285502.
RA Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL,
RA Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA;
RT "Application of massively parallel sequencing to microRNA profiling and
RT discovery in human embryonic stem cells";
RL Genome Res. 18:610-621(2008).
XX
DR HGNC; 35326; MIR548G.
DR ENTREZGENE; 100313938; MIR548G.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0022722"
FT /product="hsa-miR-548g-5p"
FT /evidence=not_experimental
FT miRNA 54..75
FT /accession="MIMAT0005912"
FT /product="hsa-miR-548g-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 89 BP; 29 A; 13 C; 13 G; 0 T; 34 other;
aguuauuaga uuagugcaaa aguaauugca guuuuugcau uacguucuau ggcaaaacug 60
uaauuacuuu uguaccaaca uaauacuuc 89
//
ID hsa-mir-548h-4 standard; RNA; HSA; 111 BP.
XX
AC MI0006414;
XX
DE Homo sapiens miR-548h-4 stem-loop
XX
RN [1]
RX PUBMED; 18285502.
RA Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL,
RA Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA;
RT "Application of massively parallel sequencing to microRNA profiling and
RT discovery in human embryonic stem cells";
RL Genome Res. 18:610-621(2008).
XX
DR HGNC; 35345; MIR548H4.
DR ENTREZGENE; 100313884; MIR548H4.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0005928"
FT /product="hsa-miR-548h-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 71..93
FT /accession="MIMAT0022723"
FT /product="hsa-miR-548h-3p"
FT /evidence=not_experimental
XX
SQ Sequence 111 BP; 33 A; 21 C; 16 G; 0 T; 41 other;
gcuauuaggu uggugcaaaa guaaucgcgg uuuuugucau uacuuuaauu acuuuacguu 60
ucauuaauga caaaaaccgc aauuacuuuu gcaccaaccu aauacuugcu a 111
//
ID hsa-mir-1276 standard; RNA; HSA; 83 BP.
XX
AC MI0006416;
XX
DE Homo sapiens miR-1276 stem-loop
XX
RN [1]
RX PUBMED; 18285502.
RA Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL,
RA Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA;
RT "Application of massively parallel sequencing to microRNA profiling and
RT discovery in human embryonic stem cells";
RL Genome Res. 18:610-621(2008).
XX
DR HGNC; 35347; MIR1276.
DR ENTREZGENE; 100302121; MIR1276.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..31
FT /accession="MIMAT0005930"
FT /product="hsa-miR-1276"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 83 BP; 19 A; 23 C; 24 G; 0 T; 17 other;
ccccagcuag guaaagagcc cuguggagac accuggauuc agagaacaug ucuccacuga 60
gcacuugggc cuugauggcg gcu 83
//
ID hsa-mir-1277 standard; RNA; HSA; 78 BP.
XX
AC MI0006419;
XX
DE Homo sapiens miR-1277 stem-loop
XX
RN [1]
RX PUBMED; 18285502.
RA Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL,
RA Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA;
RT "Application of massively parallel sequencing to microRNA profiling and
RT discovery in human embryonic stem cells";
RL Genome Res. 18:610-621(2008).
XX
DR HGNC; 35350; MIR1277.
DR ENTREZGENE; 100302214; MIR1277.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..31
FT /accession="MIMAT0022724"
FT /product="hsa-miR-1277-5p"
FT /evidence=not_experimental
FT miRNA 47..68
FT /accession="MIMAT0005933"
FT /product="hsa-miR-1277-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 78 BP; 25 A; 7 C; 13 G; 0 T; 33 other;
accucccaaa uauauauaua uauguacgua uguguauaua aauguauacg uagauauaua 60
uguauuuuug guggguuu 78
//
ID hsa-mir-1252 standard; RNA; HSA; 65 BP.
XX
AC MI0006434;
XX
DE Homo sapiens miR-1252 stem-loop
XX
RN [1]
RX PUBMED; 18285502.
RA Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL,
RA Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA;
RT "Application of massively parallel sequencing to microRNA profiling and
RT discovery in human embryonic stem cells";
RL Genome Res. 18:610-621(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 35365; MIR1252.
DR ENTREZGENE; 100302136; MIR1252.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0005944"
FT /product="hsa-miR-1252-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 40..61
FT /accession="MIMAT0026744"
FT /product="hsa-miR-1252-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 65 BP; 26 A; 7 C; 10 G; 0 T; 22 other;
agaaagaagg aaauugaauu cauuuagaaa agagaauucc aaaugagcuu aauuuccuuu 60
uuucu 65
//
ID hsa-mir-664a standard; RNA; HSA; 82 BP.
XX
AC MI0006442;
XX
DE Homo sapiens miR-664 stem-loop
XX
RN [1]
RX PUBMED; 18285502.
RA Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL,
RA Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA;
RT "Application of massively parallel sequencing to microRNA profiling and
RT discovery in human embryonic stem cells";
RL Genome Res. 18:610-621(2008).
XX
DR HGNC; 35370; MIR664.
DR ENTREZGENE; 100302234; MIR664.
XX
CC This miRNA sequence overlaps an annotated snoRNA, ACA38b. However, both
CC miR and miR* sequences are identified in reference [1], and the sequence
CC is homologous with rat mir-664.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..34
FT /accession="MIMAT0005948"
FT /product="hsa-miR-664a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 49..71
FT /accession="MIMAT0005949"
FT /product="hsa-miR-664a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 82 BP; 34 A; 13 C; 13 G; 0 T; 22 other;
gaacauugaa acuggcuagg gaaaaugauu ggauagaaac uauuauucua uucauuuauc 60
cccagccuac aaaaugaaaa aa 82
//
ID hsa-mir-1306 standard; RNA; HSA; 85 BP.
XX
AC MI0006443;
XX
DE Homo sapiens miR-1306 stem-loop
XX
RN [1]
RX PUBMED; 18285502.
RA Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL,
RA Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA;
RT "Application of massively parallel sequencing to microRNA profiling and
RT discovery in human embryonic stem cells";
RL Genome Res. 18:610-621(2008).
XX
DR HGNC; 35371; MIR1306.
DR ENTREZGENE; 100302197; MIR1306.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0022726"
FT /product="hsa-miR-1306-5p"
FT /evidence=not_experimental
FT miRNA 55..72
FT /accession="MIMAT0005950"
FT /product="hsa-miR-1306-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 85 BP; 17 A; 23 C; 27 G; 0 T; 18 other;
gugagcaguc uccaccaccu ccccugcaaa cguccagugg ugcagaggua auggacguug 60
gcucuggugg ugauggacag uccga 85
//
ID hsa-mir-1307 standard; RNA; HSA; 149 BP.
XX
AC MI0006444;
XX
DE Homo sapiens miR-1307 stem-loop
XX
RN [1]
RX PUBMED; 18285502.
RA Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL,
RA Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA;
RT "Application of massively parallel sequencing to microRNA profiling and
RT discovery in human embryonic stem cells";
RL Genome Res. 18:610-621(2008).
XX
RN [2]
RX PUBMED; 19144710.
RA Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G;
RT "Identification of novel Epstein-Barr virus microRNA genes from
RT nasopharyngeal carcinomas";
RL J Virol. 83:3333-3341(2009).
XX
DR HGNC; 35372; MIR1307.
DR ENTREZGENE; 100302174; MIR1307.
XX
FH Key Location/Qualifiers
FH
FT miRNA 41..61
FT /accession="MIMAT0022727"
FT /product="hsa-miR-1307-5p"
FT /evidence=not_experimental
FT miRNA 80..101
FT /accession="MIMAT0005951"
FT /product="hsa-miR-1307-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], 454 [2]"
XX
SQ Sequence 149 BP; 27 A; 44 C; 40 G; 0 T; 38 other;
caucaagacc cagcugaguc acugucacug ccuaccaauc ucgaccggac cucgaccggc 60
ucgucugugu ugccaaucga cucggcgugg cgucggucgu gguagauagg cggucaugca 120
uacgaauuuu cagcucuugu ucuggugac 149
//
ID vvi-MIR166d standard; RNA; VVI; 160 BP.
XX
AC MI0006510;
XX
DE Vitis vinifera miR166d stem-loop
XX
RN [1]
RX PUBMED; 17721507.
RA Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne
RA N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C,
RA Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B,
RA Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C,
RA Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M,
RA Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G,
RA Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A,
RA Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M,
RA Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P;
RT "The grapevine genome sequence suggests ancestral hexaploidization in
RT major angiosperm phyla";
RL Nature. 449:463-467(2007).
XX
RN [2]
RX PUBMED; 19939267.
RA Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del
RA Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS;
RT "High throughput approaches reveal splicing of primary microRNA
RT transcripts and tissue specific expression of mature microRNAs in Vitis
RT vinifera";
RL BMC Genomics. 10:558(2009).
XX
DR ENTREZGENE; 100272082; MIR166D.
XX
FH Key Location/Qualifiers
FH
FT miRNA 129..149
FT /accession="MIMAT0005665"
FT /product="vvi-miR166d"
FT /evidence=experimental
FT /experiment="Array [2], Illumina [2]"
FT /similarity="MI0002220"
XX
SQ Sequence 160 BP; 32 A; 48 C; 27 G; 0 T; 53 other;
cugcuuugag gggauuguug ucuggcucga ggccaccaac caucuuugau ugauucaaau 60
acuuugauca gcuucaaccc aucuucuccu ucaauucaau uccacccucu gauuaugugu 120
uagugcccuc ggaccaggcu ucauuccccu caaucacugc 160
//
ID vvi-MIR169e standard; RNA; VVI; 149 BP.
XX
AC MI0006525;
XX
DE Vitis vinifera miR169e stem-loop
XX
RN [1]
RX PUBMED; 17721507.
RA Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne
RA N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C,
RA Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B,
RA Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C,
RA Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M,
RA Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G,
RA Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A,
RA Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M,
RA Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P;
RT "The grapevine genome sequence suggests ancestral hexaploidization in
RT major angiosperm phyla";
RL Nature. 449:463-467(2007).
XX
RN [2]
RX PUBMED; 19939267.
RA Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del
RA Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS;
RT "High throughput approaches reveal splicing of primary microRNA
RT transcripts and tissue specific expression of mature microRNAs in Vitis
RT vinifera";
RL BMC Genomics. 10:558(2009).
XX
DR ENTREZGENE; 100272006; MIR169E.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0005680"
FT /product="vvi-miR169e"
FT /evidence=experimental
FT /experiment="Array [2], Illumina [2]"
FT /similarity="MI0005646"
XX
SQ Sequence 149 BP; 29 A; 31 C; 32 G; 0 T; 57 other;
gucuugucug auagccaagg augacuugcc ugcccuaucc caaguggguc aauuucuuuc 60
uuuuuuccaa guaguguuug auauuugaua uaucaugaau ccgguuguuu ggguuccagg 120
cagucaccuu ggcuaauuuu acaggcucu 149
//
ID mml-mir-506 standard; RNA; MML; 109 BP.
XX
AC MI0006610;
XX
DE Macaca mulatta miR-506 stem-loop
XX
RN [1]
RX PUBMED; 17416744.
RA Zhang R, Peng Y, Wang W, Su B;
RT "Rapid evolution of an X-linked microRNA cluster in primates";
RL Genome Res. 17:612-617(2007).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315162; MIR506.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..47
FT /accession="MIMAT0026745"
FT /product="mml-miR-506-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 64..84
FT /accession="MIMAT0005762"
FT /product="mml-miR-506-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003193"
XX
SQ Sequence 109 BP; 29 A; 16 C; 24 G; 0 T; 40 other;
ugucuagugc cguuaugugu agugccuuau ucaggaaggu guuacuuaau auauuaauau 60
uuguaaggca cccuucugag uagaguaaug ugcaacaugg acaucauuu 109
//
ID mml-mir-508 standard; RNA; MML; 85 BP.
XX
AC MI0006612;
XX
DE Macaca mulatta miR-508 stem-loop
XX
RN [1]
RX PUBMED; 17416744.
RA Zhang R, Peng Y, Wang W, Su B;
RT "Rapid evolution of an X-linked microRNA cluster in primates";
RL Genome Res. 17:612-617(2007).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315441; MIR508.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0026746"
FT /product="mml-miR-508-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 50..72
FT /accession="MIMAT0005764"
FT /product="mml-miR-508-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003195"
XX
SQ Sequence 85 BP; 25 A; 19 C; 17 G; 0 T; 24 other;
ugagugucgu gcucuacucc agagggcguc acucacauaa acuaaaacau gauugucgcc 60
uuuuugagua gaguaauaca cauca 85
//
ID mml-mir-509-2 standard; RNA; MML; 94 BP.
XX
AC MI0006614;
XX
DE Macaca mulatta miR-509-2 stem-loop
XX
RN [1]
RX PUBMED; 17416744.
RA Zhang R, Peng Y, Wang W, Su B;
RT "Rapid evolution of an X-linked microRNA cluster in primates";
RL Genome Res. 17:612-617(2007).
XX
DR ENTREZGENE; 100315164; MIR509-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 55..77
FT /accession="MIMAT0005765"
FT /product="mml-miR-509"
FT /evidence=not_experimental
FT /similarity="MI0003196"
XX
SQ Sequence 94 BP; 26 A; 14 C; 26 G; 0 T; 28 other;
caugcugugu gugguacccu acuacaggca guggcaauca uguauaguua aaaaugauug 60
guaugucugu ggguagagua augcaugaca caug 94
//
ID mml-mir-510 standard; RNA; MML; 98 BP.
XX
AC MI0006615;
XX
DE Macaca mulatta miR-510 stem-loop
XX
RN [1]
RX PUBMED; 17416744.
RA Zhang R, Peng Y, Wang W, Su B;
RT "Rapid evolution of an X-linked microRNA cluster in primates";
RL Genome Res. 17:612-617(2007).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315388; MIR510.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0005766"
FT /product="mml-miR-510-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003197"
FT miRNA 57..79
FT /accession="MIMAT0026747"
FT /product="mml-miR-510-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 98 BP; 28 A; 16 C; 25 G; 0 T; 29 other;
ugcugugugu gugugguauc cuacuccgga gaguggcaau cacauauaau uaagugugau 60
ugaaaccucu aagaguggag uaacacauga cauguacu 98
//
ID mml-mir-513b-1 standard; RNA; MML; 81 BP.
XX
AC MI0006616;
XX
DE Macaca mulatta miR-513b-1 stem-loop
XX
RN [1]
RX PUBMED; 17416744.
RA Zhang R, Peng Y, Wang W, Su B;
RT "Rapid evolution of an X-linked microRNA cluster in primates";
RL Genome Res. 17:612-617(2007).
XX
DR ENTREZGENE; 100315165; MIR513B-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0005767"
FT /product="mml-miR-513b"
FT /evidence=not_experimental
FT /similarity="MI0003191"
XX
SQ Sequence 81 BP; 26 A; 12 C; 16 G; 0 T; 27 other;
uuuacagugc cuuucacaag gaggugucau uuaugugaac uaaacuauaa augucaccuu 60
uuugggaaga guaauguaca a 81
//
ID mml-mir-513b-2 standard; RNA; MML; 81 BP.
XX
AC MI0006617;
XX
DE Macaca mulatta miR-513b-2 stem-loop
XX
RN [1]
RX PUBMED; 17416744.
RA Zhang R, Peng Y, Wang W, Su B;
RT "Rapid evolution of an X-linked microRNA cluster in primates";
RL Genome Res. 17:612-617(2007).
XX
DR ENTREZGENE; 100315166; MIR513B-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0005767"
FT /product="mml-miR-513b"
FT /evidence=not_experimental
FT /similarity="MI0003192"
XX
SQ Sequence 81 BP; 24 A; 12 C; 19 G; 0 T; 26 other;
gugugcagug ccuuucacaa ggagguguca uuuaugugaa cuaaacuaua aaugucaccu 60
uuuugggaag aguaauguac a 81
//
ID mml-mir-513a-1 standard; RNA; MML; 82 BP.
XX
AC MI0006618;
XX
DE Macaca mulatta miR-513a-1 stem-loop
XX
RN [1]
RX PUBMED; 17416744.
RA Zhang R, Peng Y, Wang W, Su B;
RT "Rapid evolution of an X-linked microRNA cluster in primates";
RL Genome Res. 17:612-617(2007).
XX
DR ENTREZGENE; 100315500; MIR513A-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0005768"
FT /product="mml-miR-513a"
FT /evidence=not_experimental
FT /similarity="MI0003191"
XX
SQ Sequence 82 BP; 23 A; 14 C; 19 G; 0 T; 26 other;
guguacagug ccuuucacag ggagguguca uuuaugugaa cuaaacuaua aaugucaccu 60
uucugcgaag gguaauguac au 82
//
ID mml-mir-513a-3 standard; RNA; MML; 82 BP.
XX
AC MI0006620;
XX
DE Macaca mulatta miR-513a-3 stem-loop
XX
RN [1]
RX PUBMED; 17416744.
RA Zhang R, Peng Y, Wang W, Su B;
RT "Rapid evolution of an X-linked microRNA cluster in primates";
RL Genome Res. 17:612-617(2007).
XX
DR ENTREZGENE; 100315167; MIR513A-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0005768"
FT /product="mml-miR-513a"
FT /evidence=not_experimental
FT /similarity="MI0003191"
XX
SQ Sequence 82 BP; 25 A; 13 C; 17 G; 0 T; 27 other;
cuguacauug ccuuucacag ggagguguca uuuaugugaa cuaaacuaua aaugucacuu 60
uucugagaag aguaauguac ag 82
//
ID mml-mir-514a standard; RNA; MML; 92 BP.
XX
AC MI0006621;
XX
DE Macaca mulatta miR-514 stem-loop
XX
RN [1]
RX PUBMED; 17416744.
RA Zhang R, Peng Y, Wang W, Su B;
RT "Rapid evolution of an X-linked microRNA cluster in primates";
RL Genome Res. 17:612-617(2007).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315577; MIR514.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0026748"
FT /product="mml-miR-514a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 56..76
FT /accession="MIMAT0005769"
FT /product="mml-miR-514a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003198"
XX
SQ Sequence 92 BP; 26 A; 14 C; 21 G; 0 T; 31 other;
auguugucug ugguacccua cucuggagag ugacaaucau guauaauuaa auuugauuga 60
cacuucugug aguagaguaa ugcaugacac gu 92
//
ID hsa-mir-513b standard; RNA; HSA; 84 BP.
XX
AC MI0006648;
XX
DE Homo sapiens miR-513b stem-loop
XX
RN [1]
RX PUBMED; 17416744.
RA Zhang R, Peng Y, Wang W, Su B;
RT "Rapid evolution of an X-linked microRNA cluster in primates";
RL Genome Res. 17:612-617(2007).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 33935; MIR513B.
DR ENTREZGENE; 100313822; MIR513B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0005788"
FT /product="hsa-miR-513b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003191"
FT miRNA 50..71
FT /accession="MIMAT0026749"
FT /product="hsa-miR-513b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 84 BP; 27 A; 12 C; 19 G; 0 T; 26 other;
guguacagug ccuuucacaa ggagguguca uuuaugugaa cuaaaauaua aaugucaccu 60
uuuugagagg aguaauguac agca 84
//
ID hsa-mir-513c standard; RNA; HSA; 84 BP.
XX
AC MI0006649;
XX
DE Homo sapiens miR-513c stem-loop
XX
RN [1]
RX PUBMED; 17416744.
RA Zhang R, Peng Y, Wang W, Su B;
RT "Rapid evolution of an X-linked microRNA cluster in primates";
RL Genome Res. 17:612-617(2007).
XX
DR HGNC; 33934; MIR513C.
DR ENTREZGENE; 100313804; MIR513C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0005789"
FT /product="hsa-miR-513c-5p"
FT /evidence=not_experimental
FT /similarity="MI0003191"
FT miRNA 49..71
FT /accession="MIMAT0022728"
FT /product="hsa-miR-513c-3p"
FT /evidence=not_experimental
XX
SQ Sequence 84 BP; 26 A; 14 C; 18 G; 0 T; 26 other;
gcguacagug ccuuucucaa ggaggugucg uuuaugugaa cuaaaauaua aauuucaccu 60
uucugagaag aguaauguac agca 84
//
ID oan-mir-9-1 standard; RNA; OAN; 122 BP.
XX
AC MI0006658;
XX
DE Ornithorhynchus anatinus miR-9-1 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314437; MIR9-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..51
FT /accession="MIMAT0006792"
FT /product="oan-miR-9-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 68..88
FT /accession="MIMAT0006793"
FT /product="oan-miR-9-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 122 BP; 27 A; 31 C; 34 G; 0 T; 30 other;
ggggccggau cgcacugagc uggcuuuggu cuuugguuau cuagcuguau gaguguaugu 60
gaugucauaa agcuagagaa ccgaauguaa aaaccagcuu ccgccgucac agccccggcc 120
cc 122
//
ID oan-mir-129 standard; RNA; OAN; 128 BP.
XX
AC MI0006665;
XX
DE Ornithorhynchus anatinus miR-129 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314440; MIR129.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..50
FT /accession="MIMAT0006801"
FT /product="oan-miR-129-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 74..93
FT /accession="MIMAT0006802"
FT /product="oan-miR-129-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 128 BP; 22 A; 34 C; 37 G; 0 T; 35 other;
ggggagaggu gucuccgucu cccuuggauc uuuuugcggu cugggcuugc uguuccucua 60
aucaguaguc aggaagcccu uaccccaaaa aguaucugcg agagaccugg ucggcagaug 120
uggucccc 128
//
ID oan-mir-29a-1 standard; RNA; OAN; 118 BP.
XX
AC MI0006668;
XX
DE Ornithorhynchus anatinus miR-29a-1 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314442; MIR29A-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 32..53
FT /accession="MIMAT0006806"
FT /product="oan-miR-29a-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 70..90
FT /accession="MIMAT0006807"
FT /product="oan-miR-29a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 118 BP; 30 A; 23 C; 27 G; 0 T; 38 other;
ucaaaggcuc cugugacccc ucuagaggau gacugauuuc uuuugguguu cagagucaau 60
aucauuuucu agcaccauuu gaaaucgguu auaaugauug gggaauagcg ccacguga 118
//
ID oan-mir-29b-1 standard; RNA; OAN; 121 BP.
XX
AC MI0006669;
XX
DE Ornithorhynchus anatinus miR-29b-1 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314651; MIR29B-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 36..57
FT /accession="MIMAT0006808"
FT /product="oan-miR-29b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 76..97
FT /accession="MIMAT0006809"
FT /product="oan-miR-29b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 121 BP; 30 A; 21 C; 31 G; 0 T; 39 other;
gagguagacc acgauuuuaa agcuccuuca ggaagcuggu uucauauggu gguuuagauu 60
uaacuacuga gugucuagca ccauuugaaa ucaguguucu ugguggagaa cggcugcacu 120
u 121
//
ID oan-mir-490 standard; RNA; OAN; 124 BP.
XX
AC MI0006670;
XX
DE Ornithorhynchus anatinus miR-490 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314694; MIR490.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..49
FT /accession="MIMAT0006810"
FT /product="oan-miR-490-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 67..89
FT /accession="MIMAT0006811"
FT /product="oan-miR-490-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 124 BP; 32 A; 33 C; 38 G; 0 T; 21 other;
gggagacuug gaaaguucac gguucgacgc cauggaucuc cagguggguc aagguuagag 60
acgcaccaac cuggaggacu ccaugcuguc gagcugauca cgagcaacag acgcaagagu 120
cccc 124
//
ID oan-mir-140 standard; RNA; OAN; 123 BP.
XX
AC MI0006671;
XX
DE Ornithorhynchus anatinus miR-140 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314443; MIR140.
XX
FH Key Location/Qualifiers
FH
FT miRNA 35..54
FT /accession="MIMAT0006812"
FT /product="oan-miR-140-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 74..95
FT /accession="MIMAT0006813"
FT /product="oan-miR-140-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 123 BP; 19 A; 31 C; 34 G; 0 T; 39 other;
uuugugucug ugugugucuc ucucuguguc cugccagugg uuuuacccua ugguagguua 60
cgucaugcug uucuaccaca ggguagaacc acggacagga uaccgggacg cucucugcau 120
cgg 123
//
ID oan-mir-218-1 standard; RNA; OAN; 118 BP.
XX
AC MI0006673;
XX
DE Ornithorhynchus anatinus miR-218 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314444; MIR218.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..51
FT /accession="MIMAT0006815"
FT /product="oan-miR-218-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 70..89
FT /accession="MIMAT0006816"
FT /product="oan-miR-218-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 118 BP; 30 A; 22 C; 30 G; 0 T; 36 other;
gcaguauuga cgguuuagcg agauuuucug uugugcuuga ucuaaccaug ugguugcaag 60
guaugaguaa aacaugguuc ugucaagcac cauggaaagu cacgcagcuu ucuacagc 118
//
ID oan-mir-193 standard; RNA; OAN; 95 BP.
XX
AC MI0006676;
XX
DE Ornithorhynchus anatinus miR-193 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314446; MIR193.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0006820"
FT /product="oan-miR-193-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 55..76
FT /accession="MIMAT0006821"
FT /product="oan-miR-193-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 95 BP; 16 A; 18 C; 29 G; 0 T; 32 other;
gguugugauu ccagagucgg gguuuugagg gcgagaugag uuuguguuuu auccaacugg 60
cccacaaagu cccgcuuuug guggucacuu ugauc 95
//
ID oan-mir-365-1 standard; RNA; OAN; 83 BP.
XX
AC MI0006677;
XX
DE Ornithorhynchus anatinus miR-365-1 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314447; MIR365.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0006822"
FT /product="oan-miR-365-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 53..74
FT /accession="MIMAT0006823"
FT /product="oan-miR-365-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 83 BP; 21 A; 17 C; 20 G; 0 T; 25 other;
gcagggaaaa ugagggacuu uugggggcag auguguuucc auugcacuau cauaaugccc 60
cuaaaaaucc uuauugcucu ugc 83
//
ID oan-mir-181a-1 standard; RNA; OAN; 127 BP.
XX
AC MI0006685;
XX
DE Ornithorhynchus anatinus miR-181a-1 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314451; MIR181A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..52
FT /accession="MIMAT0006833"
FT /product="oan-miR-181a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 70..91
FT /accession="MIMAT0006834"
FT /product="oan-miR-181a-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 127 BP; 28 A; 32 C; 27 G; 0 T; 40 other;
gaauucugcu ucgaaugguu gcuucaguga acauucaacg cugucgguga guuuggaauu 60
aaaguagaaa ccaucgaccg uugauuguac ccugcggcaa ccaccguccu ccuuucuuca 120
ugcuuuc 127
//
ID oan-mir-181b-1 standard; RNA; OAN; 110 BP.
XX
AC MI0006686;
XX
DE Ornithorhynchus anatinus miR-181b-1 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314697; MIR181B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..47
FT /accession="MIMAT0006835"
FT /product="oan-miR-181b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 67..87
FT /accession="MIMAT0006836"
FT /product="oan-miR-181b-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 110 BP; 33 A; 24 C; 26 G; 0 T; 27 other;
ugcagaguuu aacaaagguc ccaaugaaca uucauugcug ucgguggguu uaacucugag 60
gacaagcuca cugaacaaug aauggaacug uggcucaccu uaggcaacca 110
//
ID oan-mir-137a standard; RNA; OAN; 110 BP.
XX
AC MI0006687;
XX
DE Ornithorhynchus anatinus miR-137a stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314652; MIR137A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..50
FT /accession="MIMAT0006837"
FT /product="oan-miR-137a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 64..86
FT /accession="MIMAT0006838"
FT /product="oan-miR-137a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 110 BP; 21 A; 20 C; 33 G; 0 T; 36 other;
gcuucgucuu ucugacucuc uucggugacg gguauucuug gguggauaau acggauuacg 60
uuguuauugc uuaagaauac gcguagucga ggagaguauc ugcggcaggc 110
//
ID oan-mir-1338 standard; RNA; OAN; 116 BP.
XX
AC MI0006688;
XX
DE Ornithorhynchus anatinus miR-1338 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314452; MIR1338.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..46
FT /accession="MIMAT0006839"
FT /product="oan-miR-1338-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 70..91
FT /accession="MIMAT0006840"
FT /product="oan-miR-1338-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 116 BP; 17 A; 31 C; 33 G; 0 T; 35 other;
ggccucuuuc uaguuguugg ggaugcaggg agcagaccag uccaguagag uugccuucaa 60
uuaaguuccc acugggcuug ugcucacugu cucccugcuu cuguagccug ugggcc 116
//
ID oan-mir-204 standard; RNA; OAN; 119 BP.
XX
AC MI0006689;
XX
DE Ornithorhynchus anatinus miR-204 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314453; MIR204.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..52
FT /accession="MIMAT0006841"
FT /product="oan-miR-204-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 69..88
FT /accession="MIMAT0006842"
FT /product="oan-miR-204-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 119 BP; 28 A; 33 C; 32 G; 0 T; 26 other;
gaccgccggu gauccuugug acugcugagc uucccuuugu cauccuaugc cuggaaguca 60
aaauggggca gggacagcaa agggaugauc aaccgucacc uccaacaccg agauguguc 119
//
ID oan-mir-190a standard; RNA; OAN; 78 BP.
XX
AC MI0006690;
XX
DE Ornithorhynchus anatinus miR-190a stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314756; MIR190A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0006843"
FT /product="oan-miR-190a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 48..69
FT /accession="MIMAT0006844"
FT /product="oan-miR-190a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 78 BP; 22 A; 12 C; 12 G; 0 T; 32 other;
aggccucugu gugauauguu ugauauauua gguuguuauu uaauccaacu auauaucaaa 60
cauauuccua cagugucu 78
//
ID oan-mir-106 standard; RNA; OAN; 114 BP.
XX
AC MI0006693;
XX
DE Ornithorhynchus anatinus miR-106 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314455; MIR106.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..50
FT /accession="MIMAT0006849"
FT /product="oan-miR-106-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 65..86
FT /accession="MIMAT0006850"
FT /product="oan-miR-106-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 114 BP; 30 A; 21 C; 27 G; 0 T; 36 other;
acuugguguu ggauaggccu ugguugugca aaagugcuua cagugcaggu agcuuuuagu 60
accuacugca auguaagcac uucuagcauu accauggcaa uucaaucaau gagu 114
//
ID oan-mir-18 standard; RNA; OAN; 130 BP.
XX
AC MI0006694;
XX
DE Ornithorhynchus anatinus miR-18 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314456; MIR18.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..48
FT /accession="MIMAT0006851"
FT /product="oan-miR-18-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 69..90
FT /accession="MIMAT0006852"
FT /product="oan-miR-18-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 130 BP; 34 A; 31 C; 25 G; 0 T; 40 other;
gcuauccauu ucagaauguc ccuuguguua aggugcaucu agugcaguua gugaaguagc 60
uuagaaucua cugcccuaaa ugcuccuucu ggcacaagcu gccuaauaua caacuucgaa 120
auccaugcgu 130
//
ID oan-mir-20b standard; RNA; OAN; 106 BP.
XX
AC MI0006695;
XX
DE Ornithorhynchus anatinus miR-20b stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314457; MIR20B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0006853"
FT /product="oan-miR-20b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 65..85
FT /accession="MIMAT0006854"
FT /product="oan-miR-20b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 106 BP; 30 A; 20 C; 23 G; 0 T; 33 other;
uggaaaucgu auccugacag uaccaaagug cucauagugc agguaguuuu uuucaauuga 60
uucuacugua augugggcac uuacaguacu ccaggauaaa gugcca 106
//
ID oan-mir-363 standard; RNA; OAN; 89 BP.
XX
AC MI0006698;
XX
DE Ornithorhynchus anatinus miR-363 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314699; MIR363.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0006859"
FT /product="oan-miR-363-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 57..77
FT /accession="MIMAT0006860"
FT /product="oan-miR-363-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 89 BP; 23 A; 14 C; 24 G; 0 T; 28 other;
guuuugcugu ugucgggugg aucacgaugc aauuuugauu aguuuaguag gagaaaaauu 60
gcacgguauc caucuguaaa ccgcaggac 89
//
ID oan-mir-1339 standard; RNA; OAN; 107 BP.
XX
AC MI0006699;
XX
DE Ornithorhynchus anatinus miR-1339 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314458; MIR1339.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..50
FT /accession="MIMAT0006861"
FT /product="oan-miR-1339-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 68..89
FT /accession="MIMAT0006862"
FT /product="oan-miR-1339-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 107 BP; 36 A; 16 C; 22 G; 0 T; 33 other;
ugaugaaagc acuacuaaga acuagauuca gaugcaagag aauuuucagu ugucaguuug 60
gguugacuga aaacucauuu ugcaugcaga auccaguuug aauauca 107
//
ID oan-mir-133a-1 standard; RNA; OAN; 101 BP.
XX
AC MI0006701;
XX
DE Ornithorhynchus anatinus miR-133a-1 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314460; MIR133A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0006864"
FT /product="oan-miR-133a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 62..83
FT /accession="MIMAT0006865"
FT /product="oan-miR-133a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 101 BP; 27 A; 27 C; 20 G; 0 T; 27 other;
ggccuucggc aaugcuuugc uaaagcuggu aaaauggaac caaaucaccu cuucaaugga 60
uuuggucccc uucaaccagc uguagcuaug cauugaacac c 101
//
ID oan-mir-29a-2 standard; RNA; OAN; 113 BP.
XX
AC MI0006702;
XX
DE Ornithorhynchus anatinus miR-29a-2 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314618; MIR29A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0009167"
FT /product="oan-miR-29a-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 64..84
FT /accession="MIMAT0006807"
FT /product="oan-miR-29a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 113 BP; 26 A; 26 C; 28 G; 0 T; 33 other;
caggacccau cucuuacaca ggcugaccga uuucucuugg uguucagagu cucaguucuu 60
gucuagcacc auuugaaauc gguuaugaug uagggggaaa agcagcaguc cug 113
//
ID oan-mir-135b-1 standard; RNA; OAN; 114 BP.
XX
AC MI0006705;
XX
DE Ornithorhynchus anatinus miR-135b-1 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314462; MIR135B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..53
FT /accession="MIMAT0006870"
FT /product="oan-miR-135b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 70..91
FT /accession="MIMAT0006871"
FT /product="oan-miR-135b-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 114 BP; 21 A; 27 C; 33 G; 0 T; 33 other;
cggauccucc cuuggcucuc ugcuguggcc uauggcuuuu uauuccuaug ugauugcugc 60
uuugaacuca uguagggcug aaagccaugg gcuacagaga ggggagagac accg 114
//
ID oan-mir-196a standard; RNA; OAN; 114 BP.
XX
AC MI0006709;
XX
DE Ornithorhynchus anatinus miR-196a stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314701; MIR196A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..50
FT /accession="MIMAT0006876"
FT /product="oan-miR-196a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 65..86
FT /accession="MIMAT0006877"
FT /product="oan-miR-196a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 114 BP; 20 A; 24 C; 33 G; 0 T; 37 other;
gcccgccucg cucagcuggu cuguggcuua gguaguuuca uguuguuggg auugaauuuu 60
gaacucggca acaagaaacu gucugaguua caucagucgg uuuucgucgu gggc 114
//
ID oan-mir-1422a standard; RNA; OAN; 107 BP.
XX
AC MI0006711;
XX
DE Ornithorhynchus anatinus miR-1422a stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314465; MIR1422A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0006879"
FT /product="oan-miR-1422a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 57..77
FT /accession="MIMAT0006880"
FT /product="oan-miR-1422a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 107 BP; 33 A; 17 C; 23 G; 0 T; 34 other;
gaccaucaug auucugguuu caauccaggc aaguguuucu auauguacag auaauguaga 60
aaaucuugug uggauuggaa ccagggucau auuauauaca cagaguc 107
//
ID oan-mir-1422h standard; RNA; OAN; 93 BP.
XX
AC MI0006713;
XX
DE Ornithorhynchus anatinus miR-1422h stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314467; MIR1422H.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0006883"
FT /product="oan-miR-1422h-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 55..76
FT /accession="MIMAT0006884"
FT /product="oan-miR-1422h-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 93 BP; 26 A; 13 C; 18 G; 0 T; 36 other;
acaucaugau ucugguuuua gucaugaaag cguuuuuuca guauuaauaa uugggaaauc 60
guugucauga cugagcccau gaucauauua ugu 93
//
ID oan-mir-1422f standard; RNA; OAN; 130 BP.
XX
AC MI0006715;
XX
DE Ornithorhynchus anatinus miR-1422f stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314770; MIR1422F.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..47
FT /accession="MIMAT0006887"
FT /product="oan-miR-1422f-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 67..86
FT /accession="MIMAT0006888"
FT /product="oan-miR-1422f-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 130 BP; 38 A; 22 C; 28 G; 0 T; 42 other;
uuggagggau caugaugguu cugguuuaag ucaugacaag uuuuucuugc aguagagaua 60
aucuggaaaa aauggucaug acugauacca agaucauauu acguacccag aguccaucau 120
cucuuuucag 130
//
ID oan-mir-1422g standard; RNA; OAN; 146 BP.
XX
AC MI0006716;
XX
DE Ornithorhynchus anatinus miR-1422g stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314702; MIR1422G.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..49
FT /accession="MIMAT0006889"
FT /product="oan-miR-1422g-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 67..88
FT /accession="MIMAT0006890"
FT /product="oan-miR-1422g-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 146 BP; 42 A; 30 C; 24 G; 0 T; 50 other;
gauuagaggg agcaucauga uucugguuua agucgugaug aguuuuucua ucaguacaga 60
uaaucuggaa aaacucguca ugacugauac caugauccua uugcauacuc aaauccuuua 120
cguuuuuaca uuucccucca aacauc 146
//
ID oan-mir-1422c standard; RNA; OAN; 111 BP.
XX
AC MI0006717;
XX
DE Ornithorhynchus anatinus miR-1422c stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314468; MIR1422C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..52
FT /accession="MIMAT0006891"
FT /product="oan-miR-1422c-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 68..89
FT /accession="MIMAT0006892"
FT /product="oan-miR-1422c-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 111 BP; 32 A; 18 C; 22 G; 0 T; 39 other;
agguggagau gaccauccug auucugguuu caauccauac uagucuuucu auauguacag 60
auaauguaga aaaccuggua uggauuguua ccagguucag auuauauacu u 111
//
ID oan-mir-1422i standard; RNA; OAN; 102 BP.
XX
AC MI0006718;
XX
DE Ornithorhynchus anatinus miR-1422i stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314469; MIR1422I.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0006893"
FT /product="oan-miR-1422i-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 63..83
FT /accession="MIMAT0006894"
FT /product="oan-miR-1422i-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 102 BP; 29 A; 21 C; 18 G; 0 T; 34 other;
gugaccauca ugauucuggu uucaauccag agcaguguuu ucuuuacaua cagauaaucu 60
agaaaacugc aucuggauug aucccagggu cauuuuauac ac 102
//
ID oan-mir-1422k standard; RNA; OAN; 98 BP.
XX
AC MI0006719;
XX
DE Ornithorhynchus anatinus miR-1422k stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314470; MIR1422K.
XX
CC The 5' mature product seems to be predominantly expressed in platypus,
CC with the 3' product more prevalent in echidna [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0006895"
FT /product="oan-miR-1422k-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 61..82
FT /accession="MIMAT0006896"
FT /product="oan-miR-1422k-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 98 BP; 28 A; 13 C; 20 G; 0 T; 37 other;
gugaucauug ugaugcuggu uuaaguccag acaaguguuu ucuguauauu uagauaaugu 60
agaaaaccuu aucuggauuu guaccagcau cagauuau 98
//
ID oan-let-7b standard; RNA; OAN; 82 BP.
XX
AC MI0006720;
XX
DE Ornithorhynchus anatinus let-7b stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314620; MIRLET7B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0006897"
FT /product="oan-let-7b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 61..80
FT /accession="MIMAT0006898"
FT /product="oan-let-7b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 82 BP; 19 A; 16 C; 24 G; 0 T; 23 other;
gggaugaggu aguagguugu gugguuucag gggagugauu uugccccaau cagaagauaa 60
cuauacagcc uacugccuuc cc 82
//
ID oan-mir-219 standard; RNA; OAN; 122 BP.
XX
AC MI0006721;
XX
DE Ornithorhynchus anatinus miR-219 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314703; MIR219.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..53
FT /accession="MIMAT0006899"
FT /product="oan-miR-219-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 74..95
FT /accession="MIMAT0006900"
FT /product="oan-miR-219-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 122 BP; 20 A; 40 C; 41 G; 0 T; 21 other;
ggcccaaccg agccagcggg gccccgccgc ugauugucca aacgcaauuc uugugcgagu 60
uugcggccaa ccgagaauug ugacuggaca ucuguggcug ggcucccggc gcgacgcggg 120
cc 122
//
ID oan-mir-144 standard; RNA; OAN; 135 BP.
XX
AC MI0006723;
XX
DE Ornithorhynchus anatinus miR-144 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314655; MIR144.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..72
FT /accession="MIMAT0006902"
FT /product="oan-miR-144-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 87..106
FT /accession="MIMAT0006903"
FT /product="oan-miR-144-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 135 BP; 25 A; 39 C; 40 G; 0 T; 31 other;
ggcuuugccu gcucugaggc gcccccauug uugcccgggg cccuggcggg gauaucaucg 60
uauacuguaa guuugcuaug agacacuaca guauagauga uguacuagcc cgggugcccc 120
agcccagcag gagcc 135
//
ID oan-mir-139 standard; RNA; OAN; 87 BP.
XX
AC MI0006724;
XX
DE Ornithorhynchus anatinus miR-139 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314472; MIR139.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0006904"
FT /product="oan-miR-139-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 52..73
FT /accession="MIMAT0006905"
FT /product="oan-miR-139-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 87 BP; 21 A; 23 C; 27 G; 0 T; 16 other;
ggggcccggg uguagucuac agugcaugug ucuccaggga cacuagacag cuggagacac 60
agcucuguug gauacaaccg aagccac 87
//
ID oan-mir-301 standard; RNA; OAN; 121 BP.
XX
AC MI0006727;
XX
DE Ornithorhynchus anatinus miR-301 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314704; MIR301.
XX
FH Key Location/Qualifiers
FH
FT miRNA 36..56
FT /accession="MIMAT0006909"
FT /product="oan-miR-301-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 73..95
FT /accession="MIMAT0006910"
FT /product="oan-miR-301-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 121 BP; 34 A; 23 C; 23 G; 0 T; 41 other;
uauuauggug uguuuuacgc uuucugcuaa cgaaugcucu gacuuuauug cacuacuguu 60
cuuuacagcu agcagugcaa uaguauuguc aaagcaucug aaagcagaau acacagcagu 120
a 121
//
ID oan-mir-30c-2 standard; RNA; OAN; 122 BP.
XX
AC MI0006728;
XX
DE Ornithorhynchus anatinus miR-30c-2 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314474; MIR30C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..53
FT /accession="MIMAT0006911"
FT /product="oan-miR-30c-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 70..91
FT /accession="MIMAT0006912"
FT /product="oan-miR-30c-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 122 BP; 36 A; 27 C; 30 G; 0 T; 29 other;
cuguucuaaa gagcccugag ugacagguac uguaaacauc cuacacucuc agcuguagau 60
gugagaaagc ugggagaagg cuguuuacuc ucucugccuu ggaaaucagc caaagagaac 120
ag 122
//
ID oan-mir-30a standard; RNA; OAN; 137 BP.
XX
AC MI0006729;
XX
DE Ornithorhynchus anatinus miR-30a stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314475; MIR30A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..53
FT /accession="MIMAT0006913"
FT /product="oan-miR-30a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 73..94
FT /accession="MIMAT0006914"
FT /product="oan-miR-30a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 137 BP; 35 A; 26 C; 38 G; 0 T; 38 other;
gaguggauau uggcacugac agugagcgac uguaaacauc cucgacugga agcugugaag 60
cagcagaugg ggcuuucagu cggauguuug cagcugccua cugccuuaga cuucaagaaa 120
uguuaauaua guugcuu 137
//
ID oan-mir-460 standard; RNA; OAN; 83 BP.
XX
AC MI0006730;
XX
DE Ornithorhynchus anatinus miR-460 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314476; MIR460.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0006915"
FT /product="oan-miR-460-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 50..70
FT /accession="MIMAT0006916"
FT /product="oan-miR-460-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 83 BP; 22 A; 20 C; 18 G; 0 T; 23 other;
ugacuguaua gaaccugcau uguacacacu gugugucucg cucucugcac acagcgcgua 60
caauguggau acuauagaag uca 83
//
ID oan-mir-1420c standard; RNA; OAN; 106 BP.
XX
AC MI0006737;
XX
DE Ornithorhynchus anatinus miR-1420c stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100314706; MIR1420C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..49
FT /accession="MIMAT0026754"
FT /product="oan-miR-1420c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 65..86
FT /accession="MIMAT0006926"
FT /product="oan-miR-1420c-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
XX
SQ Sequence 106 BP; 21 A; 24 C; 27 G; 0 T; 34 other;
ugcucacuuc acugcucaac cuugccuauc cgaucggcuu gcacugucug guuauauuaa 60
agggaaagug cuucccguuc ggaugaguua gguuugaggu gugaca 106
//
ID oan-mir-186 standard; RNA; OAN; 84 BP.
XX
AC MI0006741;
XX
DE Ornithorhynchus anatinus miR-186 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314481; MIR186.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0006931"
FT /product="oan-miR-186-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 54..75
FT /accession="MIMAT0006932"
FT /product="oan-miR-186-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 84 BP; 19 A; 17 C; 18 G; 0 T; 30 other;
gcucauaacu uuccaaagaa uucuccuuuu gggcuuucua ugcuugguca cagcccaaag 60
gugaauuuuu ugggaaguuu gagc 84
//
ID oan-mir-200a standard; RNA; OAN; 114 BP.
XX
AC MI0006744;
XX
DE Ornithorhynchus anatinus miR-200a stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314623; MIR200A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..51
FT /accession="MIMAT0006935"
FT /product="oan-miR-200a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 66..88
FT /accession="MIMAT0006936"
FT /product="oan-miR-200a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 114 BP; 25 A; 28 C; 30 G; 0 T; 31 other;
gcuuggugcc aacugugguc cuccgugggc aucuuacuag acagugcugg auuugggauc 60
uacucuaaca cugucuggua acgauguuca aggaaggacc aauccucuac gagc 114
//
ID oan-mir-200b standard; RNA; OAN; 109 BP.
XX
AC MI0006745;
XX
DE Ornithorhynchus anatinus miR-200b stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314483; MIR200B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0006937"
FT /product="oan-miR-200b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 61..83
FT /accession="MIMAT0006938"
FT /product="oan-miR-200b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 109 BP; 25 A; 28 C; 28 G; 0 T; 28 other;
ucuggauuca gggccgccac uaccaucuua cugggcagca uuggaugagu ucuguguuuc 60
uaauacugcc ugguaaugau gauggccgcg gcccauacgc aacaacaga 109
//
ID oan-mir-1422l standard; RNA; OAN; 99 BP.
XX
AC MI0006746;
XX
DE Ornithorhynchus anatinus miR-1422l stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314484; MIR1422L.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0006939"
FT /product="oan-miR-1422l"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 99 BP; 26 A; 20 C; 20 G; 0 T; 33 other;
gugaacaucg aggcucgggu uucauucaag ccgucuuuuc uuccuauugg uaauaagaaa 60
auucugacuu gauugauucc cgagucagau gauauacac 99
//
ID oan-mir-103-2 standard; RNA; OAN; 105 BP.
XX
AC MI0006748;
XX
DE Ornithorhynchus anatinus miR-103-2 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314771; MIR103-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..48
FT /accession="MIMAT0006941"
FT /product="oan-miR-103-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 63..85
FT /accession="MIMAT0006942"
FT /product="oan-miR-103-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 105 BP; 20 A; 24 C; 26 G; 0 T; 35 other;
gagcugcgcc guccuuggug cuuucagcuu cuuuacagug cugccuuguu gcauucaugu 60
caagcagcau uguacagggc uaugaaagaa ccaagguuuu ugcuu 105
//
ID oan-mir-499 standard; RNA; OAN; 91 BP.
XX
AC MI0006754;
XX
DE Ornithorhynchus anatinus miR-499 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314488; MIR499.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0006949"
FT /product="oan-miR-499-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 56..77
FT /accession="MIMAT0006950"
FT /product="oan-miR-499-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 91 BP; 16 A; 25 C; 24 G; 0 T; 26 other;
agccuggggg ggcagcgguu aagacuugua gugauguuua gcucaucucc acgugaacau 60
cacugcaagu cugugcugcu ucuccccucc u 91
//
ID oan-mir-1355 standard; RNA; OAN; 84 BP.
XX
AC MI0006755;
XX
DE Ornithorhynchus anatinus miR-1355 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314489; MIR1355.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0006951"
FT /product="oan-miR-1355-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 49..69
FT /accession="MIMAT0006952"
FT /product="oan-miR-1355-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 84 BP; 13 A; 24 C; 24 G; 0 T; 23 other;
gggaggcccu ggcuguucca guuuugagag gagugugugu uggcaaacuc uccucucgau 60
ccuggcacua ccugugccau cacc 84
//
ID oan-mir-24-1 standard; RNA; OAN; 84 BP.
XX
AC MI0006757;
XX
DE Ornithorhynchus anatinus miR-24 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314658; MIR24.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..35
FT /accession="MIMAT0006954"
FT /product="oan-miR-24-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 52..73
FT /accession="MIMAT0006955"
FT /product="oan-miR-24-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 84 BP; 17 A; 26 C; 23 G; 0 T; 18 other;
ggacugaccc uccagugccu acugagcuga uaucaguucu cguugaccca cuggcucagu 60
ucagcaggaa caggagugcg gccc 84
//
ID oan-mir-27b standard; RNA; OAN; 117 BP.
XX
AC MI0006758;
XX
DE Ornithorhynchus anatinus miR-27b stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314490; MIR27B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..51
FT /accession="MIMAT0006956"
FT /product="oan-miR-27b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 72..92
FT /accession="MIMAT0006957"
FT /product="oan-miR-27b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 117 BP; 19 A; 30 C; 38 G; 0 T; 30 other;
gccgucucuc ugucucucug ucgcggcgca gagcuuagcu gauuggugaa cagugauugc 60
uggacucuuu guucacagug gcuaaguucu gcgcccgcag agaaggggac ggacggc 117
//
ID oan-mir-23b standard; RNA; OAN; 109 BP.
XX
AC MI0006759;
XX
DE Ornithorhynchus anatinus miR-23b stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314491; MIR23B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0006958"
FT /product="oan-miR-23b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 63..84
FT /accession="MIMAT0006959"
FT /product="oan-miR-23b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 109 BP; 22 A; 37 C; 30 G; 0 T; 20 other;
gcgaucgauc ccggcccggc ugccuggguu ccuggcaugc ugauuuguga cuuaagagaa 60
aaaucacauu gccagggaua accacgcauc cgggaccgcc ccccgccgc 109
//
ID oan-mir-22 standard; RNA; OAN; 122 BP.
XX
AC MI0006761;
XX
DE Ornithorhynchus anatinus miR-22 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314492; MIR22.
XX
FH Key Location/Qualifiers
FH
FT miRNA 36..57
FT /accession="MIMAT0006961"
FT /product="oan-miR-22-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 74..95
FT /accession="MIMAT0006962"
FT /product="oan-miR-22-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 122 BP; 22 A; 39 C; 34 G; 0 T; 27 other;
cccgugugcc ggcccgggcc uggcugaguc acagcaguuc uucaguggca agcuuuacgu 60
ccugucccag cuaaagcugc caguugaaga acuguugaac ucagccccug ucugccacga 120
gg 122
//
ID oan-mir-1421c standard; RNA; OAN; 81 BP.
XX
AC MI0006764;
XX
DE Ornithorhynchus anatinus miR-1421c stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314711; MIR1421C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0006967"
FT /product="oan-miR-1421c-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 49..69
FT /accession="MIMAT0006968"
FT /product="oan-miR-1421c-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 81 BP; 18 A; 19 C; 25 G; 0 T; 19 other;
gacacggugu gaguagguua caugcggugc aguauggcag uggaaaaugc ugcaucccgu 60
gugaccuccu uacacagugc c 81
//
ID oan-mir-142 standard; RNA; OAN; 110 BP.
XX
AC MI0006772;
XX
DE Ornithorhynchus anatinus miR-142 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314496; MIR142.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..49
FT /accession="MIMAT0006982"
FT /product="oan-miR-142-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 65..86
FT /accession="MIMAT0006983"
FT /product="oan-miR-142-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 110 BP; 31 A; 21 C; 31 G; 0 T; 27 other;
cgacagacag acagacagug cagucaucca uaaaguagaa agcacuacua acagcgcugu 60
aggguguagu guuuccuacu uuauggauga guguacugug ggcuucggag 110
//
ID oan-let-7e standard; RNA; OAN; 122 BP.
XX
AC MI0006773;
XX
DE Ornithorhynchus anatinus let-7e stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314497; MIRLET7E.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..51
FT /accession="MIMAT0006984"
FT /product="oan-let-7e-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 80..101
FT /accession="MIMAT0006985"
FT /product="oan-let-7e-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 122 BP; 23 A; 33 C; 32 G; 0 T; 34 other;
ggcucccacc acaguccugu ccuugaggcu gagguaguag auugaauagu ugugggguca 60
cggccucccu gugugcuaac uauacaaucu acugucuuuc cugaggcgac agucaguucg 120
cc 122
//
ID oan-mir-7-2 standard; RNA; OAN; 118 BP.
XX
AC MI0006774;
XX
DE Ornithorhynchus anatinus miR-7-2 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314626; MIR7-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0006986"
FT /product="oan-miR-7-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 66..87
FT /accession="MIMAT0006987"
FT /product="oan-miR-7-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 118 BP; 16 A; 37 C; 37 G; 0 T; 28 other;
gcugguccug gccgggcccc gucuggaaga cuagugauuu uguuguucuc uagcugaccg 60
cacgacaaca aaucccaguc ugccugacgg ugcccggugu ccucgucggg ggccgugc 118
//
ID oan-mir-26-1 standard; RNA; OAN; 81 BP.
XX
AC MI0006777;
XX
DE Ornithorhynchus anatinus miR-26 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314499; MIR26.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0006991"
FT /product="oan-miR-26-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 49..70
FT /accession="MIMAT0006992"
FT /product="oan-miR-26-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 81 BP; 11 A; 26 C; 26 G; 0 T; 18 other;
ggcucccgcc cgguucaagu aauccaggau aggcugucgg caccacggcc uguccucggu 60
uacuugucuc gggagguggc c 81
//
ID oan-mir-215 standard; RNA; OAN; 118 BP.
XX
AC MI0006783;
XX
DE Ornithorhynchus anatinus miR-215 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314502; MIR215.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..50
FT /accession="MIMAT0007000"
FT /product="oan-miR-215-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 66..87
FT /accession="MIMAT0007001"
FT /product="oan-miR-215-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 118 BP; 34 A; 25 C; 27 G; 0 T; 32 other;
caauccagga agaaauggug uacaggaaaa ugaccuauga auugacagac aguauauuua 60
gauugucugu cauuucugua ggccaaaguu cugcaugccu ucacugcucc ggcgccag 118
//
ID oan-mir-153-1 standard; RNA; OAN; 145 BP.
XX
AC MI0006786;
XX
DE Ornithorhynchus anatinus miR-153 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314627; MIR153.
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..78
FT /accession="MIMAT0007004"
FT /product="oan-miR-153-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 96..117
FT /accession="MIMAT0007005"
FT /product="oan-miR-153-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 145 BP; 21 A; 40 C; 35 G; 0 T; 49 other;
ugucugucuc ugccugucug ucucucuguc ucucucucuc ucucacagcu gccaguguca 60
uuuuugugau cugcagcuua guacucuggc uccaguugca uagucacaaa agugaucauu 120
ggcaggugug gcggcugcac ggacg 145
//
ID oan-mir-146b standard; RNA; OAN; 109 BP.
XX
AC MI0006788;
XX
DE Ornithorhynchus anatinus miR-146b stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314716; MIR146B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0007007"
FT /product="oan-miR-146b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 63..84
FT /accession="MIMAT0007008"
FT /product="oan-miR-146b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 109 BP; 26 A; 30 C; 30 G; 0 T; 23 other;
aggcccaaau gcggugcuug gcucugagaa cugaauucca uaggcuguga guugaugagg 60
augcccuagg gauucaguuc cacagcccag caacccacag cacuggccu 109
//
ID oan-mir-101-1 standard; RNA; OAN; 81 BP.
XX
AC MI0006790;
XX
DE Ornithorhynchus anatinus miR-101-1 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314506; MIR101-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..71
FT /accession="MIMAT0007011"
FT /product="oan-miR-101"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 81 BP; 19 A; 19 C; 22 G; 0 T; 21 other;
ggcugcccug gcucaguuau cacagugcug augcugucca uucuaaaggu acaguacugu 60
gauaacugaa ggauggcagc c 81
//
ID oan-mir-192 standard; RNA; OAN; 91 BP.
XX
AC MI0006794;
XX
DE Ornithorhynchus anatinus miR-192 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314662; MIR192.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0007016"
FT /product="oan-miR-192-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 58..79
FT /accession="MIMAT0007017"
FT /product="oan-miR-192-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 91 BP; 19 A; 28 C; 21 G; 0 T; 23 other;
agagcgcaca gggcucugac cuaugaauug acagccaguu cucucugacc ccucuggcug 60
ccaauuccau aggucacagg uauguucgcc u 91
//
ID oan-mir-194-2 standard; RNA; OAN; 92 BP.
XX
AC MI0006795;
XX
DE Ornithorhynchus anatinus miR-194-2 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314508; MIR194-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0006999"
FT /product="oan-miR-194-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 54..75
FT /accession="MIMAT0007018"
FT /product="oan-miR-194-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 92 BP; 15 A; 23 C; 29 G; 0 T; 25 other;
uuguggagcc caccccuugu aacagcaacu ccauguggaa gggucuccug guuccagugg 60
agcugcuguu aucuugggug ggucauccgg ga 92
//
ID oan-mir-223 standard; RNA; OAN; 124 BP.
XX
AC MI0006796;
XX
DE Ornithorhynchus anatinus miR-223 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314509; MIR223.
XX
FH Key Location/Qualifiers
FH
FT miRNA 34..56
FT /accession="MIMAT0007019"
FT /product="oan-miR-223-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 77..98
FT /accession="MIMAT0007020"
FT /product="oan-miR-223-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 124 BP; 25 A; 34 C; 33 G; 0 T; 32 other;
gcgaccacgu gaccacaccg cagugccgcg cuccguguau uugacaagcu gaguuggaca 60
cuccgugugg uuugaguguc aguuugucaa auacccuaag ugaggcaugc ucacccaugu 120
uugc 124
//
ID oan-mir-1362 standard; RNA; OAN; 136 BP.
XX
AC MI0006798;
XX
DE Ornithorhynchus anatinus miR-1362 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314629; MIR1362.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..47
FT /accession="MIMAT0007023"
FT /product="oan-miR-1362-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 65..85
FT /accession="MIMAT0007024"
FT /product="oan-miR-1362-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 136 BP; 31 A; 49 C; 41 G; 0 T; 15 other;
cgacuggcuu cuaggcggcc ggagucuacc ccgccaaccg gacaggaaag gcgugaagcg 60
cuuccagucc agcuggacgg ggacgaggca ggccgaacca gagacacccc accgaccccc 120
acguuagcca cauucg 136
//
ID oan-mir-1365 standard; RNA; OAN; 114 BP.
XX
AC MI0006801;
XX
DE Ornithorhynchus anatinus miR-1365 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314512; MIR1365.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..52
FT /accession="MIMAT0007028"
FT /product="oan-miR-1365-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 70..89
FT /accession="MIMAT0007029"
FT /product="oan-miR-1365-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 114 BP; 30 A; 29 C; 28 G; 0 T; 27 other;
acuagaagac agcuggagug cauggcacug uacugggcac caccuguaug cagagcauua 60
uacuagaugc cuacuggagu gccuagcacu guacugagca ccaucaacuu cugu 114
//
ID oan-let-7g standard; RNA; OAN; 91 BP.
XX
AC MI0006809;
XX
DE Ornithorhynchus anatinus let-7g stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314720; MIRLET7G.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0007038"
FT /product="oan-let-7g-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 65..84
FT /accession="MIMAT0007039"
FT /product="oan-let-7g-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 91 BP; 23 A; 21 C; 25 G; 0 T; 22 other;
uccaggcuga gguaguaguu uguacaguuu cagggucuac aauaccaccc gguauaggag 60
auaacuguac aggccacugc cuugccaggg a 91
//
ID oan-mir-33b standard; RNA; OAN; 85 BP.
XX
AC MI0006811;
XX
DE Ornithorhynchus anatinus miR-33b stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314664; MIR33B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..32
FT /accession="MIMAT0006817"
FT /product="oan-miR-33-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 54..73
FT /accession="MIMAT0009191"
FT /product="oan-miR-33b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 85 BP; 16 A; 23 C; 23 G; 0 T; 23 other;
guuggccacu gucgugcauu guaguugcau ugcacguucc ggcaguacug gugcaauguu 60
cccacagugc auuacagaga cccgc 85
//
ID oan-mir-30d standard; RNA; OAN; 132 BP.
XX
AC MI0006812;
XX
DE Ornithorhynchus anatinus miR-30d stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314517; MIR30D.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..51
FT /accession="MIMAT0007041"
FT /product="oan-miR-30d-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 69..90
FT /accession="MIMAT0007042"
FT /product="oan-miR-30d-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 132 BP; 33 A; 33 C; 27 G; 0 T; 39 other;
guuagaaauu gcagagaaag ucuguggcug uaaacauccc cgacuggaag cuguaaaaua 60
ccuucaagcu uucagucaga uguuugcuac cacuggcauu ucagagucau ccacccguuu 120
cccuuuucug gc 132
//
ID oan-mir-30b standard; RNA; OAN; 111 BP.
XX
AC MI0006813;
XX
DE Ornithorhynchus anatinus miR-30b stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314518; MIR30B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..50
FT /accession="MIMAT0007043"
FT /product="oan-miR-30b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 67..86
FT /accession="MIMAT0007044"
FT /product="oan-miR-30b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 111 BP; 25 A; 34 C; 32 G; 0 T; 20 other;
ccggccggca aaaccgaguu cgaguucaug uaaacauccu acacucagcu gugacccacc 60
cagcggcugg gagggggaug uuugcuucaa ccgacuugga accgcagccg g 111
//
ID oan-mir-100 standard; RNA; OAN; 81 BP.
XX
AC MI0006815;
XX
DE Ornithorhynchus anatinus miR-100 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314721; MIR100.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0007046"
FT /product="oan-miR-100-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 49..69
FT /accession="MIMAT0007047"
FT /product="oan-miR-100-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 81 BP; 17 A; 19 C; 21 G; 0 T; 24 other;
gccuguugcc acaaacccgu agauccgaac uuguggugau auuccacaca agcuuguguc 60
uauagguaug ugucuguggg c 81
//
ID oan-mir-125 standard; RNA; OAN; 104 BP.
XX
AC MI0006816;
XX
DE Ornithorhynchus anatinus miR-125 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314691; MIR125.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..50
FT /accession="MIMAT0007048"
FT /product="oan-miR-125-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 69..89
FT /accession="MIMAT0007049"
FT /product="oan-miR-125-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 104 BP; 19 A; 26 C; 25 G; 0 T; 34 other;
aaggaauuac uugcugcgcc ccucucaauc ccugagaccc uaacuuguga uguuucccgu 60
uuaaauccac ggguuagguu cuugggagcu gugaguugug ccuu 104
//
ID oan-mir-222b-1 standard; RNA; OAN; 117 BP.
XX
AC MI0006822;
XX
DE Ornithorhynchus anatinus miR-222b-1 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314524; MIR222B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..51
FT /accession="MIMAT0007056"
FT /product="oan-miR-222b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 69..89
FT /accession="MIMAT0007057"
FT /product="oan-miR-222b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 117 BP; 34 A; 24 C; 28 G; 0 T; 31 other;
caaaagagag uggaugcuaa ucgucugcuc aguaguuggu guaggaucug ucugacauga 60
uuaagaacag cuacaucuga uuacuggguc accgauagca ucaacaaacu ucugccg 117
//
ID oan-mir-181c standard; RNA; OAN; 95 BP.
XX
AC MI0006823;
XX
DE Ornithorhynchus anatinus miR-181c stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314631; MIR181C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0007058"
FT /product="oan-miR-181c-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 60..80
FT /accession="MIMAT0007059"
FT /product="oan-miR-181c-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 95 BP; 31 A; 18 C; 22 G; 0 T; 24 other;
uguugaaaag ucacaaucaa cauucauuac ugucgguggg uugugauaaa ugaaaaaaac 60
ucaccgccag augaaugcca cuguggcuag gcaug 95
//
ID oan-mir-23a standard; RNA; OAN; 84 BP.
XX
AC MI0006824;
XX
DE Ornithorhynchus anatinus miR-23a stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314665; MIR23A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0007060"
FT /product="oan-miR-23a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 53..74
FT /accession="MIMAT0007061"
FT /product="oan-miR-23a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 84 BP; 12 A; 23 C; 27 G; 0 T; 22 other;
ugccgccggc ggcugggguu ccuggugaug cgauuuucuu gugcucgcca aaaucacauu 60
gccagggauu uccaacuggc ggcg 84
//
ID oan-mir-27a standard; RNA; OAN; 85 BP.
XX
AC MI0006825;
XX
DE Ornithorhynchus anatinus miR-27a stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314722; MIR27A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0007062"
FT /product="oan-miR-27a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 53..73
FT /accession="MIMAT0007063"
FT /product="oan-miR-27a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 85 BP; 12 A; 26 C; 28 G; 0 T; 19 other;
gguccggcgg agcagggcuu agcuggccug ugaacaguua guucccugcg uguucacagu 60
ggcuaaguuc cgccccucca gggcc 85
//
ID oan-mir-1375 standard; RNA; OAN; 116 BP.
XX
AC MI0006826;
XX
DE Ornithorhynchus anatinus miR-1375 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314525; MIR1375.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..51
FT /accession="MIMAT0007064"
FT /product="oan-miR-1375-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 64..84
FT /accession="MIMAT0007065"
FT /product="oan-miR-1375-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 116 BP; 18 A; 37 C; 36 G; 0 T; 25 other;
ggauggccau ucugcugcug cagcuacucu gcuuccuguu gggcuuccug cggggagagu 60
uccagggagc gcagcaagaa gagaaucagc uccugcugcc gucaccgccg ccgucc 116
//
ID oan-mir-150 standard; RNA; OAN; 94 BP.
XX
AC MI0006840;
XX
DE Ornithorhynchus anatinus miR-150 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314725; MIR150.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0007090"
FT /product="oan-miR-150-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 53..75
FT /accession="MIMAT0007091"
FT /product="oan-miR-150-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 94 BP; 15 A; 37 C; 31 G; 0 T; 11 other;
cgccccucgg cgcccccucu cccaacccuu guaccagagc auaaacugaa ccccugguac 60
ggggccgugg gagaggggga gccggggccc cgcg 94
//
ID oan-mir-1422j standard; RNA; OAN; 126 BP.
XX
AC MI0006841;
XX
DE Ornithorhynchus anatinus miR-1422j stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314633; MIR1422J.
XX
FH Key Location/Qualifiers
FH
FT miRNA 38..59
FT /accession="MIMAT0007092"
FT /product="oan-miR-1422j-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 79..99
FT /accession="MIMAT0007093"
FT /product="oan-miR-1422j-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 126 BP; 41 A; 23 C; 25 G; 0 T; 37 other;
agcuuggcca gauagaauga ccguuaugau ucugguuuca auccagagca gaauuuucuu 60
uacauguaga aaaucuagaa aacugcaucu ggauugacau cauggucaga auauacacuc 120
agagcu 126
//
ID oan-mir-590 standard; RNA; OAN; 122 BP.
XX
AC MI0006843;
XX
DE Ornithorhynchus anatinus miR-590 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314534; MIR590.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..52
FT /accession="MIMAT0007096"
FT /product="oan-miR-590-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 70..90
FT /accession="MIMAT0007097"
FT /product="oan-miR-590-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 122 BP; 45 A; 26 C; 19 G; 0 T; 32 other;
uuuagaaaca agccuaagcc aaucagaaau gagcuuaucc auaaaaguac aguaucguca 60
guaaaccugu acuuuuaugg auaagcuagu cucugauuga aacacgcaac aagucuccuc 120
aa 122
//
ID oan-mir-1422m standard; RNA; OAN; 104 BP.
XX
AC MI0006845;
XX
DE Ornithorhynchus anatinus miR-1422m stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314726; MIR1422M.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..47
FT /accession="MIMAT0007099"
FT /product="oan-miR-1422m-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 61..82
FT /accession="MIMAT0007100"
FT /product="oan-miR-1422m-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 104 BP; 33 A; 15 C; 18 G; 0 T; 38 other;
agugacugcu augauucuag uuucauucaa ggcaaguuuu uucuugacau acaaauaauc 60
aggaaaauac ugucuugaau gauacuuggg ucagauuaua uacu 104
//
ID oan-mir-1376 standard; RNA; OAN; 99 BP.
XX
AC MI0006848;
XX
DE Ornithorhynchus anatinus miR-1376 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314536; MIR1376.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0007105"
FT /product="oan-miR-1376-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 59..79
FT /accession="MIMAT0007106"
FT /product="oan-miR-1376-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 99 BP; 23 A; 23 C; 21 G; 0 T; 32 other;
gacuccuuaa cagugcccug caggcucagc agcacucuuu cucaauuuuu uaacuauuua 60
gaaaguuggg cuguugagac cguuggacau ugacugauc 99
//
ID oan-mir-34a standard; RNA; OAN; 90 BP.
XX
AC MI0006850;
XX
DE Ornithorhynchus anatinus miR-34 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314538; MIR34.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..43
FT /accession="MIMAT0007108"
FT /product="oan-miR-34a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 54..75
FT /accession="MIMAT0007109"
FT /product="oan-miR-34a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 90 BP; 29 A; 22 C; 17 G; 0 T; 22 other;
uugccaucag ucuaguuacu aggcagugua guuagcugau ugcuauuaac accaaucacu 60
agccacacag ccagguaaaa agaccugcaa 90
//
ID oan-mir-31 standard; RNA; OAN; 136 BP.
XX
AC MI0006853;
XX
DE Ornithorhynchus anatinus miR-31 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314539; MIR31.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0007111"
FT /product="oan-miR-31-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 53..74
FT /accession="MIMAT0007112"
FT /product="oan-miR-31-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 136 BP; 30 A; 31 C; 31 G; 0 T; 44 other;
cucagagcug gagagaaggc aagauguugg cauagcuguu gaguuaagaa ccugcuaugc 60
cgacauguug ucaucuuucu ugucuaucag cagccauggc cagcuuuaau ucucccuauc 120
ucuucuguuu acugag 136
//
ID oan-mir-124a-1 standard; RNA; OAN; 92 BP.
XX
AC MI0006854;
XX
DE Ornithorhynchus anatinus miR-124a-1 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314762; MIR124.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0007113"
FT /product="oan-miR-124a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 57..77
FT /accession="MIMAT0007114"
FT /product="oan-miR-124a-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 92 BP; 25 A; 25 C; 21 G; 0 T; 21 other;
cacuaggccu gucucuccgu guucacagcg gaccuugauu uaaauuugua cacaauuaag 60
gcacgcggug aaugccaaga gcccagccaa ag 92
//
ID oan-mir-107 standard; RNA; OAN; 89 BP.
XX
AC MI0006857;
XX
DE Ornithorhynchus anatinus miR-107 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314669; MIR107.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0007118"
FT /product="oan-miR-107-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 53..74
FT /accession="MIMAT0007119"
FT /product="oan-miR-107-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 89 BP; 18 A; 20 C; 22 G; 0 T; 29 other;
cuucucuuug cuuucagcuu cuuuacagug uugccuugug gcauggaguu caagcagcau 60
uguacagggc uaucaaagcc uagagagcg 89
//
ID oan-mir-10a standard; RNA; OAN; 122 BP.
XX
AC MI0006859;
XX
DE Ornithorhynchus anatinus miR-10a stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314542; MIR10A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..49
FT /accession="MIMAT0007122"
FT /product="oan-miR-10a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 69..89
FT /accession="MIMAT0007123"
FT /product="oan-miR-10a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 122 BP; 34 A; 19 C; 26 G; 0 T; 43 other;
aaagaagaua ugucugucuu cuguauauac ccuguagauc cgaauuugug uaaggaguuu 60
cguggucaca aauucguauc uaggggaaua uguaguugac auaaacacuc cggucauuuu 120
uu 122
//
ID oan-mir-126 standard; RNA; OAN; 110 BP.
XX
AC MI0006861;
XX
DE Ornithorhynchus anatinus miR-126 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314543; MIR126.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..49
FT /accession="MIMAT0007125"
FT /product="oan-miR-126-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 66..87
FT /accession="MIMAT0007126"
FT /product="oan-miR-126-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 110 BP; 25 A; 29 C; 30 G; 0 T; 26 other;
gaagcaucag ugacagcugg caacugccca uuauuacuuu ugguacgcgc ugugacgcuu 60
caaacucgua ccgugaguaa uaaugcgugg cuggcagcac uggcagcgcc 110
//
ID oan-mir-429 standard; RNA; OAN; 112 BP.
XX
AC MI0006862;
XX
DE Ornithorhynchus anatinus miR-429 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314544; MIR429.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..48
FT /accession="MIMAT0007127"
FT /product="oan-miR-429-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 64..85
FT /accession="MIMAT0007128"
FT /product="oan-miR-429-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 112 BP; 24 A; 25 C; 29 G; 0 T; 34 other;
cggcguggag gugccugcug auuggugucu uaccagacaa aguuagaucu gacuauuuuc 60
gucuaauacu gucugguaau gccgucaauc acagcggcaa gaucuucguc ug 112
//
ID oan-mir-551 standard; RNA; OAN; 93 BP.
XX
AC MI0006863;
XX
DE Ornithorhynchus anatinus miR-551 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314729; MIR551.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0007129"
FT /product="oan-miR-551-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 58..78
FT /accession="MIMAT0007130"
FT /product="oan-miR-551-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 93 BP; 20 A; 23 C; 30 G; 0 T; 20 other;
guggcuccug uggccccaga aaucaaggau gggugagacc ucuugcacaa guggaaggcg 60
acccauacuu gguuucaggg gcuuccggaa ugc 93
//
ID oan-mir-222a standard; RNA; OAN; 110 BP.
XX
AC MI0006865;
XX
DE Ornithorhynchus anatinus miR-222a stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314670; MIR222A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..47
FT /accession="MIMAT0007132"
FT /product="oan-miR-222a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 64..84
FT /accession="MIMAT0007133"
FT /product="oan-miR-222a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 110 BP; 22 A; 29 C; 25 G; 0 T; 34 other;
agagagccug uaguugcccc ucaaucgcuc aguagucagu guagauccug uauucuaauc 60
agcagcuaca ucuggcuacu gggucucuga ggguaccuuc uagcuucucu 110
//
ID oan-mir-221 standard; RNA; OAN; 93 BP.
XX
AC MI0006866;
XX
DE Ornithorhynchus anatinus miR-221 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314635; MIR221.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0007134"
FT /product="oan-miR-221-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 59..80
FT /accession="MIMAT0007135"
FT /product="oan-miR-221-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 93 BP; 24 A; 17 C; 22 G; 0 T; 30 other;
uucagguuug aggcaugaac cuggcauaca auguagaauu cuguauuugu uaagcaacag 60
cuacauuguc ugcuggguuu caagcuaccu gga 93
//
ID oan-mir-148 standard; RNA; OAN; 84 BP.
XX
AC MI0006868;
XX
DE Ornithorhynchus anatinus miR-148 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314547; MIR148.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0007137"
FT /product="oan-miR-148-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 52..73
FT /accession="MIMAT0007138"
FT /product="oan-miR-148-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 84 BP; 23 A; 17 C; 19 G; 0 T; 25 other;
agucuuuuga ggcaaaguuc ugugacacuc agacucugau uaugauagaa gucagugcac 60
uacagaacuu ugucuccaga ggcu 84
//
ID oan-mir-145 standard; RNA; OAN; 98 BP.
XX
AC MI0006870;
XX
DE Ornithorhynchus anatinus miR-145 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314548; MIR145.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..36
FT /accession="MIMAT0007141"
FT /product="oan-miR-145-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 57..77
FT /accession="MIMAT0007142"
FT /product="oan-miR-145-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 98 BP; 19 A; 24 C; 29 G; 0 T; 26 other;
cccccaccgu gucucagguc caguuuuccc aggaauacau aggugcugag auggggauuc 60
cuggaaauac uguucuugag gucauggcuu ggcagcgg 98
//
ID oan-mir-143 standard; RNA; OAN; 90 BP.
XX
AC MI0006871;
XX
DE Ornithorhynchus anatinus miR-143 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314549; MIR143.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0007143"
FT /product="oan-miR-143-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 52..72
FT /accession="MIMAT0007144"
FT /product="oan-miR-143-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 90 BP; 18 A; 20 C; 31 G; 0 T; 21 other;
gaugucuccc agcccaaggu gcagugcugc aucucugguc aguugugagu cugagaugaa 60
gcacuguagc ucgggaaggg aggagcuguc 90
//
ID oan-mir-20a-2 standard; RNA; OAN; 109 BP.
XX
AC MI0006874;
XX
DE Ornithorhynchus anatinus miR-20a-2 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314731; MIR20A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..42
FT /accession="MIMAT0007145"
FT /product="oan-miR-20a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 59..81
FT /accession="MIMAT0009169"
FT /product="oan-miR-20a-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 109 BP; 26 A; 23 C; 25 G; 0 T; 35 other;
cugaugacag cuccuguagc acuaaagugc uuauagugca gguaguguuu aguuaucuac 60
ugcauuauga gcacuuaaag uccugcuggc uguagagcuu caccuucag 109
//
ID oan-mir-92a-2 standard; RNA; OAN; 110 BP.
XX
AC MI0006875;
XX
DE Ornithorhynchus anatinus miR-92a-2 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314671; MIR92A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..52
FT /accession="MIMAT0009170"
FT /product="oan-miR-92a-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 67..88
FT /accession="MIMAT0006858"
FT /product="oan-miR-92a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 110 BP; 19 A; 24 C; 33 G; 0 T; 34 other;
gccaggaaaa gucaaacccc uuucuacgca gguugggauc aguugcaaug cuuuguuugu 60
cuaugguauu gcacuugucc cggccuguug agguugcugg ggaucguggc 110
//
ID oan-mir-191 standard; RNA; OAN; 114 BP.
XX
AC MI0006879;
XX
DE Ornithorhynchus anatinus miR-191 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314552; MIR191.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..51
FT /accession="MIMAT0007152"
FT /product="oan-miR-191-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 72..90
FT /accession="MIMAT0007153"
FT /product="oan-miR-191-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 114 BP; 28 A; 33 C; 27 G; 0 T; 26 other;
uggagcaucc uugacagcuu gacagcaggc aacggaaucc caaaagcagc uguugucucc 60
agagcauucc agcugcaguu ggauuucguu cccugcuauc cugcaagagc acca 114
//
ID oan-mir-425 standard; RNA; OAN; 103 BP.
XX
AC MI0006880;
XX
DE Ornithorhynchus anatinus miR-425 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314672; MIR425.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0007154"
FT /product="oan-miR-425-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 60..79
FT /accession="MIMAT0007155"
FT /product="oan-miR-425-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 103 BP; 25 A; 29 C; 29 G; 0 T; 20 other;
gggagagaaa ucgcuuugga augacacgau cacucccguu gagcggacag ccaagaagcc 60
aucgggaaua ucguguccgu ccaaagcucu uucggggccu ccc 103
//
ID oan-mir-454 standard; RNA; OAN; 94 BP.
XX
AC MI0006881;
XX
DE Ornithorhynchus anatinus miR-454 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314553; MIR454.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0007156"
FT /product="oan-miR-454-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 56..78
FT /accession="MIMAT0007157"
FT /product="oan-miR-454-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 94 BP; 23 A; 14 C; 23 G; 0 T; 34 other;
uuaccagauc cuggaacccu aucgauauug ucucugcugu guaaauagcu gugaguagug 60
caauauugcu uauaggguuu uaguguuugg gaaa 94
//
ID oan-mir-130b standard; RNA; OAN; 129 BP.
XX
AC MI0006882;
XX
DE Ornithorhynchus anatinus miR-130b stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314733; MIR130B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 40..60
FT /accession="MIMAT0007158"
FT /product="oan-miR-130b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 81..102
FT /accession="MIMAT0007159"
FT /product="oan-miR-130b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 129 BP; 32 A; 24 C; 29 G; 0 T; 44 other;
uaguacgguu gaacauuuca ugagugguau cugucuagug cccuuuuuau guuguacuac 60
uagugaucuu gcacaaaaag cagugcaaug uuaaaagggc auuggccagu gauacuguuc 120
accuuccug 129
//
ID oan-mir-21 standard; RNA; OAN; 114 BP.
XX
AC MI0006883;
XX
DE Ornithorhynchus anatinus miR-21 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314554; MIR21.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..50
FT /accession="MIMAT0007160"
FT /product="oan-miR-21-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 67..88
FT /accession="MIMAT0007161"
FT /product="oan-miR-21-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 114 BP; 25 A; 28 C; 26 G; 0 T; 35 other;
aucuccacga cuggaccauc cuaucggaua gcuuaucaga cugauguuga cuguuagauc 60
uccuggcaac agcagucgau gggcugucug acauuuuggu aucugucauc cgau 114
//
ID oan-mir-16a standard; RNA; OAN; 132 BP.
XX
AC MI0006887;
XX
DE Ornithorhynchus anatinus miR-16a stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314734; MIR16A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..50
FT /accession="MIMAT0007166"
FT /product="oan-miR-16a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 71..92
FT /accession="MIMAT0007167"
FT /product="oan-miR-16a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 132 BP; 40 A; 29 C; 26 G; 0 T; 37 other;
cacugugauc ucauugucag caguaccuua gcagcacgua aauauuggcg uuaagacucu 60
aaaaguaucu ccaguauuga cugugcugcu gaaguaaggc ugacuacucu cuacaacuga 120
caaucaaaag ug 132
//
ID oan-mir-1388 standard; RNA; OAN; 95 BP.
XX
AC MI0006888;
XX
DE Ornithorhynchus anatinus miR-1388 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314673; MIR1388.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0007168"
FT /product="oan-miR-1388-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 58..79
FT /accession="MIMAT0007169"
FT /product="oan-miR-1388-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 95 BP; 20 A; 21 C; 30 G; 0 T; 24 other;
ucaguggggg gcgugucuag gacugucuaa ccugagaaug gugaugugug agggucaauc 60
ucagguucgu cagcccauga aacgccuucu ccaga 95
//
ID oan-mir-214 standard; RNA; OAN; 118 BP.
XX
AC MI0006889;
XX
DE Ornithorhynchus anatinus miR-214 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314557; MIR214.
XX
FH Key Location/Qualifiers
FH
FT miRNA 32..51
FT /accession="MIMAT0007170"
FT /product="oan-miR-214-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 73..94
FT /accession="MIMAT0007171"
FT /product="oan-miR-214-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 118 BP; 27 A; 35 C; 31 G; 0 T; 25 other;
ugggacuggc uggacggagu ugucacgugu cugccugucu acacuugcug ugcagaacau 60
ccucucaccu guacagcagg cacagacagg cagucacaug acaacccagc cugacuga 118
//
ID oan-mir-199 standard; RNA; OAN; 118 BP.
XX
AC MI0006890;
XX
DE Ornithorhynchus anatinus miR-199 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314638; MIR199.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..52
FT /accession="MIMAT0007172"
FT /product="oan-miR-199-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 70..90
FT /accession="MIMAT0007173"
FT /product="oan-miR-199-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 118 BP; 28 A; 28 C; 35 G; 0 T; 27 other;
uagaagcguc cggagauccu gcuccgucgc cccaguguuc agacuaccug uucaggacaa 60
ugcuguugua caguagucug cacauugguu agacugggca agggaaagcg gcgaaaug 118
//
ID oan-mir-128-2 standard; RNA; OAN; 111 BP.
XX
AC MI0006892;
XX
DE Ornithorhynchus anatinus miR-128-2 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314559; MIR128-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..27
FT /accession="MIMAT0007175"
FT /product="oan-miR-128-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 65..85
FT /accession="MIMAT0007006"
FT /product="oan-miR-128-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 111 BP; 23 A; 29 C; 38 G; 0 T; 21 other;
cagggcuggc gauuggacag ccggaagggg ggccguuaca cuguaagaga gugaguacca 60
ggucucacag ugaaccgguc ucuuucccga cuggaucugg cucccagacg g 111
//
ID oan-let-7f-2 standard; RNA; OAN; 130 BP.
XX
AC MI0006895;
XX
DE Ornithorhynchus anatinus let-7f-2 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314561; MIRLET7F-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..52
FT /accession="MIMAT0007179"
FT /product="oan-let-7f-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 81..101
FT /accession="MIMAT0009171"
FT /product="oan-let-7f-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 130 BP; 28 A; 24 C; 32 G; 0 T; 46 other;
gaauaugaag acuugcugug cucuuuggga ugagguagua gauuguauag uuuuaggguc 60
auacccgauc uuggagauaa cuauacaguc uacugucuuu cccacggugu ugcuguucuc 120
guccgauauc 130
//
ID oan-mir-99 standard; RNA; OAN; 102 BP.
XX
AC MI0006897;
XX
DE Ornithorhynchus anatinus miR-99 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314674; MIR99.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0007183"
FT /product="oan-miR-99-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 61..82
FT /accession="MIMAT0007184"
FT /product="oan-miR-99-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 102 BP; 24 A; 21 C; 29 G; 0 T; 28 other;
gugugauaau gccaguuggc auaaacccgu agauccgauc uuguggugaa gugaaauaca 60
caagcucgcc ucucuggguc ugugucagug ugguaaucgg ac 102
//
ID oan-mir-383 standard; RNA; OAN; 119 BP.
XX
AC MI0006900;
XX
DE Ornithorhynchus anatinus miR-383 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314563; MIR383.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..52
FT /accession="MIMAT0007189"
FT /product="oan-miR-383-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 73..93
FT /accession="MIMAT0007190"
FT /product="oan-miR-383-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 119 BP; 32 A; 28 C; 33 G; 0 T; 26 other;
cgcaagagaa ucucggaguc accugcuccu cagaucagaa ggugauugug gcuuugggua 60
gcuacuaagc agccacaaca cugccugguc agaaagagca aguggacaag ccuuuugug 119
//
ID oan-mir-135a standard; RNA; OAN; 109 BP.
XX
AC MI0006902;
XX
DE Ornithorhynchus anatinus miR-135a stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314640; MIR135A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 67..87
FT /accession="MIMAT0007193"
FT /product="oan-miR-135a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 109 BP; 37 A; 14 C; 20 G; 0 T; 38 other;
ugaucaagau aaauucacuc uaguguuuua uggcuuuuua uuccuaugug auaguaauaa 60
agucucaugu agggauggaa gccaugaaau acauugugaa aaaucauca 109
//
ID oan-mir-1397 standard; RNA; OAN; 116 BP.
XX
AC MI0006908;
XX
DE Ornithorhynchus anatinus miR-1397 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314765; MIR1397.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..52
FT /accession="MIMAT0007199"
FT /product="oan-miR-1397-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 67..88
FT /accession="MIMAT0007200"
FT /product="oan-miR-1397-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 116 BP; 30 A; 26 C; 29 G; 0 T; 31 other;
uaagucccug acacacugcg augugugcau ugcauugcga cggguuacau cacuggacgu 60
agcaugaugu aacccaacgc agcaugaugu aagcgucguc auacuuugga gauuua 116
//
ID oan-mir-1398 standard; RNA; OAN; 108 BP.
XX
AC MI0006909;
XX
DE Ornithorhynchus anatinus miR-1398 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100314738; MIR1398.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..42
FT /accession="MIMAT0007201"
FT /product="oan-miR-1398-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 57..78
FT /accession="MIMAT0026760"
FT /product="oan-miR-1398-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 108 BP; 28 A; 25 C; 32 G; 0 T; 23 other;
uggcaaaauc cauccucuca gccccuuugu caauuacacu gcggagcuag ggcagcagug 60
uugucgacua gaggaccgag gagauggaac uucgggaaag auggguca 108
//
ID oan-mir-30e standard; RNA; OAN; 95 BP.
XX
AC MI0006911;
XX
DE Ornithorhynchus anatinus miR-30e stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314569; MIR30E.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0007203"
FT /product="oan-miR-30e-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 57..78
FT /accession="MIMAT0007204"
FT /product="oan-miR-30e-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 95 BP; 22 A; 22 C; 28 G; 0 T; 23 other;
gacagucuuu gcuacuguaa acauccuuga cuggaagcug gaaggugccg aaggagcuuu 60
cagucggaug uuuacagcgg caggcugcca caguc 95
//
ID oan-mir-1400 standard; RNA; OAN; 110 BP.
XX
AC MI0006912;
XX
DE Ornithorhynchus anatinus miR-1400 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314570; MIR1400.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..48
FT /accession="MIMAT0007205"
FT /product="oan-miR-1400-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 69..89
FT /accession="MIMAT0007206"
FT /product="oan-miR-1400-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 110 BP; 26 A; 35 C; 26 G; 0 T; 23 other;
uggcccaaag acaugggcgc augaacaggg auggacaggg uaugggagga gacugcauuc 60
uuucugcuca ucccacucca auccauccau guccccguuc cuacacccca 110
//
ID oan-mir-1401 standard; RNA; OAN; 100 BP.
XX
AC MI0006913;
XX
DE Ornithorhynchus anatinus miR-1401 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314676; MIR1401.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0007207"
FT /product="oan-miR-1401-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 63..83
FT /accession="MIMAT0007208"
FT /product="oan-miR-1401-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 100 BP; 19 A; 30 C; 26 G; 0 T; 25 other;
gaggucaugc gaggauagcu guuucugacc accaccggcc ucuuccuucc caucaguguu 60
agaggccaau ggcagucaga aauggcucgc cuuggcucuc 100
//
ID oan-mir-1406 standard; RNA; OAN; 137 BP.
XX
AC MI0006918;
XX
DE Ornithorhynchus anatinus miR-1406 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314573; MIR1406.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..49
FT /accession="MIMAT0007214"
FT /product="oan-miR-1406-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 70..91
FT /accession="MIMAT0007215"
FT /product="oan-miR-1406-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 137 BP; 38 A; 33 C; 35 G; 0 T; 31 other;
cacugguuag ucucuugaca uccaggauga uuuaggugcc agagagagaa gcgauagucu 60
acaccuccuc cucucuccac caccuaaaug aaucugguug uuacagcaac aucagagagg 120
ggagagaugg agccagg 137
//
ID oan-mir-138-2 standard; RNA; OAN; 115 BP.
XX
AC MI0006922;
XX
DE Ornithorhynchus anatinus miR-138-2 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314677; MIR138-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..49
FT /accession="MIMAT0007216"
FT /product="oan-miR-138-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 74..94
FT /accession="MIMAT0007220"
FT /product="oan-miR-138-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 115 BP; 23 A; 35 C; 29 G; 0 T; 28 other;
gacgcucacu cugguaucgg ugcugcagcu gguguuguga aucaggccga cgagcagcga 60
guccuaauac ccggcuauuu cacuacacca ggguugcauc auaccacucc gcuuc 115
//
ID oan-mir-1409 standard; RNA; OAN; 84 BP.
XX
AC MI0006927;
XX
DE Ornithorhynchus anatinus miR-1409 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314577; MIR1409.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0007226"
FT /product="oan-miR-1409-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 52..73
FT /accession="MIMAT0007227"
FT /product="oan-miR-1409-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 84 BP; 17 A; 23 C; 21 G; 0 T; 23 other;
ggcuuuggga ggcaagggaa cuucuucucg cugaauaagg aaaugccguu ucagcgcacu 60
caaguucuca ugccucccuc ugcu 84
//
ID oan-mir-103-1 standard; RNA; OAN; 124 BP.
XX
AC MI0006930;
XX
DE Ornithorhynchus anatinus miR-103-1 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100314580; MIR103-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 38..62
FT /accession="MIMAT0031098"
FT /product="oan-miR-103-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 77..99
FT /accession="MIMAT0006942"
FT /product="oan-miR-103-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
XX
SQ Sequence 124 BP; 29 A; 26 C; 30 G; 0 T; 39 other;
cuugaacugu aaacaugugg aagauugcuc cuugcccucg gcuucuuuac agugcugccu 60
uguugcauau ggaucaagca gcauuguaca gggcuaugag ggcauugaga cuuuaucuuc 120
aaag 124
//
ID oan-mir-146a standard; RNA; OAN; 129 BP.
XX
AC MI0006931;
XX
DE Ornithorhynchus anatinus miR-146a stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314742; MIR146A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..52
FT /accession="MIMAT0007230"
FT /product="oan-miR-146a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 72..93
FT /accession="MIMAT0007231"
FT /product="oan-miR-146a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 129 BP; 29 A; 31 C; 35 G; 0 T; 34 other;
uucaacuugg agauucagua cgcucagcuu ugagaacuga auuccacggg uugugauugc 60
aacucugaca gacccguggg gcucaguucu ugagcugggg uaccucuguc cucgcagaau 120
ccaggagaa 129
//
ID oan-let-7d standard; RNA; OAN; 116 BP.
XX
AC MI0006934;
XX
DE Ornithorhynchus anatinus let-7d stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314581; MIRLET7D.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0007234"
FT /product="oan-let-7d-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 78..99
FT /accession="MIMAT0007235"
FT /product="oan-let-7d-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 116 BP; 30 A; 18 C; 29 G; 0 T; 39 other;
gaagaaacua ugggcuccua ggaagaggua guagguugca uaguuuuagg gcagugauuu 60
ugcucauaag guguuaacua uacaaccugc ugccuuucuu agggcuuuau uauuac 116
//
ID oan-mir-1419b-1 standard; RNA; OAN; 111 BP.
XX
AC MI0006937;
XX
DE Ornithorhynchus anatinus miR-1419b-1 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314743; MIR1419B-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..50
FT /accession="MIMAT0007240"
FT /product="oan-miR-1419b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 66..86
FT /accession="MIMAT0007241"
FT /product="oan-miR-1419b-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 111 BP; 27 A; 27 C; 29 G; 0 T; 28 other;
uccugggcac agugauggug ucaugcacag ugcugggaga uguuaucacg ugcuaucuca 60
uucagugaua uugucaucca gcacagcaca uguccaucaa gagccacggg a 111
//
ID oan-mir-1419c-1 standard; RNA; OAN; 109 BP.
XX
AC MI0006941;
XX
DE Ornithorhynchus anatinus miR-1419c-1 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314585; MIR1419C-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..48
FT /accession="MIMAT0007247"
FT /product="oan-miR-1419c-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 64..85
FT /accession="MIMAT0007248"
FT /product="oan-miR-1419c-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 109 BP; 25 A; 30 C; 28 G; 0 T; 26 other;
uccugggcac agugaugguc augcacaguu cugggagaug uuaucacgug cuaucucauu 60
cggugauauc gucacccagc accgcacaug cacaucaaga gccgcugga 109
//
ID oan-mir-1421ab-1 standard; RNA; OAN; 65 BP.
XX
AC MI0006943;
XX
DE Ornithorhynchus anatinus miR-1421ab-1 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314744; MIR1421AB-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0007251"
FT /product="oan-miR-1421ab-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 43..63
FT /accession="MIMAT0007252"
FT /product="oan-miR-1421ab-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 65 BP; 17 A; 14 C; 17 G; 0 T; 17 other;
gugaggagcu cacacgucuu gcagagugau gucauaaaau gaugcaaugc gucugagcuc 60
cuuac 65
//
ID oan-mir-1419d standard; RNA; OAN; 113 BP.
XX
AC MI0006944;
XX
DE Ornithorhynchus anatinus miR-1419d stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314645; MIR1419D.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..46
FT /accession="MIMAT0007253"
FT /product="oan-miR-1419d-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 66..86
FT /accession="MIMAT0007254"
FT /product="oan-miR-1419d-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 113 BP; 25 A; 34 C; 33 G; 0 T; 21 other;
gcggugaacg gcgauggcau cacacccagu gcuggagaug ucaucacgug cuaccgcguu 60
ccaugauguc auccuccagc accacgcgug uccaucggga aagauggaac ggc 113
//
ID oan-mir-32 standard; RNA; OAN; 116 BP.
XX
AC MI0006952;
XX
DE Ornithorhynchus anatinus miR-32 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314591; MIR32.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..47
FT /accession="MIMAT0007268"
FT /product="oan-miR-32-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 69..89
FT /accession="MIMAT0007269"
FT /product="oan-miR-32-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 116 BP; 23 A; 25 C; 28 G; 0 T; 40 other;
uucccauucu gcuagcucug guggagauau ugcacauuac uaaguugcau guugucaagg 60
ccucugugca auuuagugug ugcgauauuu ucacaugagu gcaugcaccc cgguug 116
//
ID oan-mir-873 standard; RNA; OAN; 87 BP.
XX
AC MI0006956;
XX
DE Ornithorhynchus anatinus miR-873 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314767; MIR873.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0007272"
FT /product="oan-miR-873-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 53..74
FT /accession="MIMAT0007273"
FT /product="oan-miR-873-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 87 BP; 24 A; 16 C; 23 G; 0 T; 24 other;
aaguuugugu gcauuugcag gaacuuguga gucuccuauu gaaaaugaac gggagacugg 60
ugaguucccg ggaacaccca caaauuu 87
//
ID oan-mir-17 standard; RNA; OAN; 85 BP.
XX
AC MI0006960;
XX
DE Ornithorhynchus anatinus miR-17 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314595; MIR17.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0007278"
FT /product="oan-miR-17-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 52..71
FT /accession="MIMAT0007279"
FT /product="oan-miR-17-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 85 BP; 25 A; 12 C; 23 G; 0 T; 25 other;
gucagaauaa ugucaaagug cuuacagugc agguaguggu auguagaauc uacugcagug 60
aaggcacuug uagcauuaug uugac 85
//
ID oan-mir-7-3 standard; RNA; OAN; 88 BP.
XX
AC MI0006961;
XX
DE Ornithorhynchus anatinus miR-7-3 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314747; MIR7-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0006986"
FT /product="oan-miR-7-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 56..77
FT /accession="MIMAT0006987"
FT /product="oan-miR-7-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 88 BP; 16 A; 27 C; 24 G; 0 T; 21 other;
gccgggcccc gucuggaaga cuagugauuu uguuguucuc uagcugaccg cacgacaaca 60
aaucccaguc ugccugacgg ugcccggu 88
//
ID oan-let-7f-1 standard; RNA; OAN; 149 BP.
XX
AC MI0006962;
XX
DE Ornithorhynchus anatinus let-7f-1 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314596; MIRLET7F-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..51
FT /accession="MIMAT0007179"
FT /product="oan-let-7f-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 87..106
FT /accession="MIMAT0007180"
FT /product="oan-let-7f-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 149 BP; 34 A; 22 C; 38 G; 0 T; 55 other;
uuugcuaagg auggauugcu cuggcagagu gagguaguag auuguauagu uuuuagggua 60
guaauuuuau ccuuuuccgg agauaacuau acaaucuauu gccuucccug aggagcagaa 120
uuucuacggu gguuucuauc cggguuuga 149
//
ID osa-MIR1425 standard; RNA; OSA; 102 BP.
XX
AC MI0006965;
XX
DE Oryza sativa miR1425 stem-loop
XX
RN [1]
RX PUBMED; 18353984.
RA Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR,
RA Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ;
RT "Genome-wide analysis for discovery of rice microRNAs reveals natural
RT antisense microRNAs (nat-miRNAs)";
RL Proc Natl Acad Sci U S A. 105:4951-4956(2008).
XX
RN [2]
RX PUBMED; 18312648.
RA Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK;
RT "Identification of novel and candidate miRNAs in rice by high throughput
RT sequencing";
RL BMC Plant Biol. 8:25(2008).
XX
RN [3]
RX PUBMED; 19055717.
RA Lacombe S, Nagasaki H, Santi C, Duval D, Piegu B, Bangratz M, Breitler JC,
RA Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski
RA WM, Sato Y, Echeverria M;
RT "Identification of precursor transcripts for 6 novel miRNAs expands the
RT diversity on the genomic organisation and expression of miRNA genes in
RT rice";
RL BMC Plant Biol. 8:123(2008).
XX
RN [4]
RX PUBMED; 21791435.
RA Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q;
RT "Differential expression of the microRNAs in superior and inferior
RT spikelets in rice (Oryza sativa)";
RL J Exp Bot. 62:4943-4954(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0005959"
FT /product="osa-miR1425-5p"
FT /evidence=experimental
FT /experiment="MPSS [1], Northern [1], cloned [2-3]"
FT miRNA 71..91
FT /accession="MIMAT0020933"
FT /product="osa-miR1425-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 102 BP; 31 A; 17 C; 19 G; 0 T; 35 other;
cuguugacug cauuaggauu caauccuugc ugcuaaaugu auugcuuaua uucagcaaua 60
uaauguucag cagcaagaac uggaucuuaa uauagucgau ag 102
//
ID osa-MIR1429 standard; RNA; OSA; 120 BP.
XX
AC MI0006969;
XX
DE Oryza sativa miR1429 stem-loop
XX
RN [1]
RX PUBMED; 18353984.
RA Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR,
RA Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ;
RT "Genome-wide analysis for discovery of rice microRNAs reveals natural
RT antisense microRNAs (nat-miRNAs)";
RL Proc Natl Acad Sci U S A. 105:4951-4956(2008).
XX
RN [2]
RX PUBMED; 18312648.
RA Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK;
RT "Identification of novel and candidate miRNAs in rice by high throughput
RT sequencing";
RL BMC Plant Biol. 8:25(2008).
XX
RN [3]
RX PUBMED; 19103661.
RA Xue LJ, Zhang JJ, Xue HW;
RT "Characterization and expression profiles of miRNAs in rice seeds";
RL Nucleic Acids Res. 37:916-930(2009).
XX
RN [4]
RX PUBMED; 19903869.
RA Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
RT "Rice MicroRNA effector complexes and targets";
RL Plant Cell. 21:3421-3435(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..21
FT /accession="MIMAT0009208"
FT /product="osa-miR1429-5p"
FT /evidence=experimental
FT /experiment="Illumina [3-4]"
FT miRNA 99..119
FT /accession="MIMAT0005963"
FT /product="osa-miR1429-3p"
FT /evidence=experimental
FT /experiment="MPSS [1], Northern [1], cloned [2], Illumina
FT [4]"
XX
SQ Sequence 120 BP; 28 A; 18 C; 28 G; 0 T; 46 other;
guaauauacu aauccgugca uccaucguau aucuuacacg ucaugugaac gugcaucggu 60
ucauaauguu guguuuauaa auguuaaugg uauguguggu ugcacggguu uguauguugc 120
//
ID osa-MIR169r standard; RNA; OSA; 129 BP.
XX
AC MI0006973;
XX
DE Oryza sativa miR169r stem-loop
XX
RN [1]
RX PUBMED; 18353984.
RA Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR,
RA Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ;
RT "Genome-wide analysis for discovery of rice microRNAs reveals natural
RT antisense microRNAs (nat-miRNAs)";
RL Proc Natl Acad Sci U S A. 105:4951-4956(2008).
XX
RN [2]
RX PUBMED; 18312648.
RA Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK;
RT "Identification of novel and candidate miRNAs in rice by high throughput
RT sequencing";
RL BMC Plant Biol. 8:25(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0026762"
FT /product="osa-miR169r-5p"
FT /evidence=not_experimental
FT miRNA 86..106
FT /accession="MIMAT0005967"
FT /product="osa-miR169r-3p"
FT /evidence=experimental
FT /experiment="MPSS [1], Northern [1], cloned [2]"
XX
SQ Sequence 129 BP; 26 A; 43 C; 28 G; 0 T; 32 other;
aggccaucuu cgauagccaa ggaugauuug ccuguagccc cauugucauc agcucucucc 60
gucgagagcg acaaccgggc ucuacuggca agucuccucg gcuacccgag uaccucuuau 120
gcuauccca 129
//
ID gga-mir-1329 standard; RNA; GGA; 95 BP.
XX
AC MI0006979;
XX
DE Gallus gallus miR-1329 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
RN [2]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
RN [3]
RX PUBMED; 18430245.
RA Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ,
RA Markis M, Isaacs G, Huang E, Morgan RW;
RT "Deep sequencing of chicken microRNAs";
RL BMC Genomics. 9:185(2008).
XX
DR ENTREZGENE; 100315694; MIR1329.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0007281"
FT /product="gga-miR-1329-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2], 454 [3]"
FT miRNA 59..80
FT /accession="MIMAT0007282"
FT /product="gga-miR-1329-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
XX
SQ Sequence 95 BP; 25 A; 19 C; 21 G; 0 T; 30 other;
ucuuggucug guuguagaga uacagugauc acguuacgau ggauuucuca aguaacaacc 60
ucguagcuug aucacgauau cccuaugacu ugaga 95
//
ID gga-mir-1397 standard; RNA; GGA; 105 BP.
XX
AC MI0006980;
XX
DE Gallus gallus miR-1397 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
RN [2]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
DR ENTREZGENE; 100315695; MIR1397.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..50
FT /accession="MIMAT0007283"
FT /product="gga-miR-1397-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 64..85
FT /accession="MIMAT0007284"
FT /product="gga-miR-1397-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
XX
SQ Sequence 105 BP; 29 A; 20 C; 27 G; 0 T; 29 other;
agcuguugac ugaaugcgau gugugcauug cauugcgacg gguuauauca cuaaucguaa 60
caugauguaa cccaacgcag caugauguaa gcgucgugaa acguu 105
//
ID gga-mir-1416 standard; RNA; GGA; 89 BP.
XX
AC MI0006981;
XX
DE Gallus gallus miR-1416 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
RN [2]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
RN [3]
RX PUBMED; 18430245.
RA Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ,
RA Markis M, Isaacs G, Huang E, Morgan RW;
RT "Deep sequencing of chicken microRNAs";
RL BMC Genomics. 9:185(2008).
XX
DR ENTREZGENE; 100315866; MIR1416.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0007285"
FT /product="gga-miR-1416-5p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [3]"
FT miRNA 55..76
FT /accession="MIMAT0007286"
FT /product="gga-miR-1416-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
XX
SQ Sequence 89 BP; 21 A; 17 C; 16 G; 0 T; 35 other;
ugaggcugau acuuuuuccu uaacucaugc cgcugugccu uuauauuuua uuucacaauu 60
guaugaguug aguacagagu aucagucca 89
//
ID gga-mir-22 standard; RNA; GGA; 100 BP.
XX
AC MI0006982;
XX
DE Gallus gallus miR-22 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 18511220.
RA Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH;
RT "Identification of novel chicken microRNAs and analysis of their genomic
RT organization";
RL Gene. 418:34-40(2008).
XX
RN [4]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
DR ENTREZGENE; 100315903; MIR22.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0007287"
FT /product="gga-miR-22-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [3], Illumina [4]"
FT miRNA 62..83
FT /accession="MIMAT0007288"
FT /product="gga-miR-22-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [3], Illumina [4]"
XX
SQ Sequence 100 BP; 20 A; 26 C; 25 G; 0 T; 29 other;
gcuccuggcu gcccggcagc aguucuucag uggcaagcuu uauguccuuc ucuaguagcu 60
aaagcugcca guugaagaac uguugaaugu agccacguuc 100
//
ID gga-mir-551 standard; RNA; GGA; 113 BP.
XX
AC MI0006983;
XX
DE Gallus gallus miR-551 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
RN [2]
RX PUBMED; 18511220.
RA Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH;
RT "Identification of novel chicken microRNAs and analysis of their genomic
RT organization";
RL Gene. 418:34-40(2008).
XX
RN [3]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
DR ENTREZGENE; 100315945; MIR551.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..48
FT /accession="MIMAT0007289"
FT /product="gga-miR-551-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 66..86
FT /accession="MIMAT0007290"
FT /product="gga-miR-551-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3]"
XX
SQ Sequence 113 BP; 24 A; 26 C; 38 G; 0 T; 25 other;
ccaccagagc ugccccaugg cuccagaaau caaggguggg uaagaccuug uaggauaacu 60
ggcaggcgac ccauacuugg uuucaggggc ugugugggua ucgucagugg ugg 113
//
ID oan-mir-1421y-2 standard; RNA; OAN; 110 BP.
XX
AC MI0006993;
XX
DE Ornithorhynchus anatinus miR-1421y-2 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314647; MIR1421Y-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0007244"
FT /product="oan-miR-1421y-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 64..86
FT /accession="MIMAT0009172"
FT /product="oan-miR-1421y-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 110 BP; 21 A; 25 C; 32 G; 0 T; 32 other;
ccagcucauc uauggcacgg ugugaggagg gcacaugugg uacaguguga uaguggaaua 60
ugcugcauca uaugugaccu cucugcaccg cacugugucu cuuugucugg 110
//
ID oan-mir-1419c-2 standard; RNA; OAN; 111 BP.
XX
AC MI0006995;
XX
DE Ornithorhynchus anatinus miR-1419c-2 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314597; MIR1419C-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..50
FT /accession="MIMAT0007247"
FT /product="oan-miR-1419c-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 66..87
FT /accession="MIMAT0007248"
FT /product="oan-miR-1419c-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 111 BP; 23 A; 33 C; 30 G; 0 T; 25 other;
uccugggccc agugauggcg ucaugcacag uucugggaga uguuaucacg ugcuaucuca 60
uucggugaua ucgucaccca gcaccgcaca ugcccaucaa gagccgcggg a 111
//
ID oan-mir-1419c-3 standard; RNA; OAN; 108 BP.
XX
AC MI0006996;
XX
DE Ornithorhynchus anatinus miR-1419c-3 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314748; MIR1419C-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..48
FT /accession="MIMAT0007247"
FT /product="oan-miR-1419c-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 64..85
FT /accession="MIMAT0007248"
FT /product="oan-miR-1419c-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 108 BP; 24 A; 30 C; 28 G; 0 T; 26 other;
uccugggcac agugaugguc augcacaguu cugggagaug uuaucacgug cuaucucauu 60
cggugauauc gucacccagc accgcacaug uccaucaaga gccgcgga 108
//
ID oan-mir-1419b-2 standard; RNA; OAN; 115 BP.
XX
AC MI0006998;
XX
DE Ornithorhynchus anatinus miR-1419b-2 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314599; MIR1419B-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..51
FT /accession="MIMAT0007240"
FT /product="oan-miR-1419b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 67..88
FT /accession="MIMAT0009174"
FT /product="oan-miR-1419b-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 115 BP; 30 A; 27 C; 31 G; 0 T; 27 other;
cauccugggc acagugaggu gucauacaca gugcugggag auguuaucac gugauauuuc 60
auucggugau aucgucaccc agcacugcaa augcccauca agagcugcgg gaaag 115
//
ID oan-mir-1421ab-2 standard; RNA; OAN; 102 BP.
XX
AC MI0006999;
XX
DE Ornithorhynchus anatinus miR-1421ab-2 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314648; MIR1421AB-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0007251"
FT /product="oan-miR-1421ab-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 61..81
FT /accession="MIMAT0007300"
FT /product="oan-miR-1421ab-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 102 BP; 20 A; 24 C; 35 G; 0 T; 23 other;
ggugacguac ggcacggugu gaggagcuca cacgucuugc agagugaugu cggaaagcga 60
ugcaaugcgu cugagcuccg uacacagugc ugggucuuuc cg 102
//
ID oan-mir-1422b-2 standard; RNA; OAN; 106 BP.
XX
AC MI0007004;
XX
DE Ornithorhynchus anatinus miR-1422b-2 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314602; MIR1422B-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..47
FT /accession="MIMAT0009175"
FT /product="oan-miR-1422b-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 63..84
FT /accession="MIMAT0006886"
FT /product="oan-miR-1422b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 106 BP; 31 A; 18 C; 21 G; 0 T; 36 other;
gaguagccac ugugguucug guuucaaucc auaccaagau uuucuaugug uacaaauaau 60
cuagaaaauc uuguguggau ugauaccagg gucagauuau auacuc 106
//
ID oan-mir-1421i-2 standard; RNA; OAN; 67 BP.
XX
AC MI0007007;
XX
DE Ornithorhynchus anatinus miR-1421i-2 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314603; MIR1421I-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..24
FT /accession="MIMAT0006979"
FT /product="oan-miR-1421i-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 40..61
FT /accession="MIMAT0009177"
FT /product="oan-miR-1421i-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 67 BP; 12 A; 19 C; 22 G; 0 T; 14 other;
gugaggaggc cguaucuccu gcggagugau gguggaaucu gccgcgaagu guacgaccuc 60
cccucac 67
//
ID oan-mir-1421i-3 standard; RNA; OAN; 67 BP.
XX
AC MI0007008;
XX
DE Ornithorhynchus anatinus miR-1421i-3 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314750; MIR1421I-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..24
FT /accession="MIMAT0006979"
FT /product="oan-miR-1421i-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 40..61
FT /accession="MIMAT0009178"
FT /product="oan-miR-1421i-3-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 67 BP; 12 A; 19 C; 22 G; 0 T; 14 other;
gugaggaggc cguaucuccu gcggagugau gguggaaucu gccgcgaagu guacgaccuc 60
cccucac 67
//
ID oan-mir-1421ak standard; RNA; OAN; 82 BP.
XX
AC MI0007013;
XX
DE Ornithorhynchus anatinus miR-1421ak stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314685; MIR1421AK.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0007309"
FT /product="oan-miR-1421ak-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 50..72
FT /accession="MIMAT0007310"
FT /product="oan-miR-1421ak-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 82 BP; 19 A; 18 C; 27 G; 0 T; 18 other;
gcgcacggug ugagcugguc acaugaggug cagugugaua guggaagaca cugcauacca 60
ugugaucucg cuacacggug ca 82
//
ID oan-mir-1419g standard; RNA; OAN; 82 BP.
XX
AC MI0007020;
XX
DE Ornithorhynchus anatinus miR-1419g stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 100314609; MIR1419G.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0007322"
FT /product="oan-miR-1419g-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 50..70
FT /accession="MIMAT0007323"
FT /product="oan-miR-1419g-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 82 BP; 20 A; 25 C; 15 G; 0 T; 22 other;
ggugucacau gcauuacuga gagaugucau cacacgcuac cucauucugu gaugucauca 60
cucaguaccg cacaugucca cc 82
//
ID gga-mir-1451 standard; RNA; GGA; 110 BP.
XX
AC MI0007054;
XX
DE Gallus gallus miR-1451 stem-loop
XX
RN [1]
RX PUBMED; 18430245.
RA Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ,
RA Markis M, Isaacs G, Huang E, Morgan RW;
RT "Deep sequencing of chicken microRNAs";
RL BMC Genomics. 9:185(2008).
XX
RN [2]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
DR ENTREZGENE; 100315867; MIR1451.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..47
FT /accession="MIMAT0007324"
FT /product="gga-miR-1451-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 63..85
FT /accession="MIMAT0007325"
FT /product="gga-miR-1451-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 110 BP; 18 A; 39 C; 33 G; 0 T; 20 other;
cagagcaagc gcaggagcug cugccucgca caggagcaag uuaccgcguu cagcucgccu 60
gccguaacuc gcugcuguga gaggcagcgg cuccuggcuc ucccugcucc 110
//
ID gga-mir-460b standard; RNA; GGA; 90 BP.
XX
AC MI0007055;
XX
DE Gallus gallus miR-460b stem-loop
XX
RN [1]
RX PUBMED; 18430245.
RA Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ,
RA Markis M, Isaacs G, Huang E, Morgan RW;
RT "Deep sequencing of chicken microRNAs";
RL BMC Genomics. 9:185(2008).
XX
RN [2]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
DR ENTREZGENE; 100315946; MIR460B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0007326"
FT /product="gga-miR-460b-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 57..79
FT /accession="MIMAT0007327"
FT /product="gga-miR-460b-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 90 BP; 20 A; 22 C; 21 G; 0 T; 27 other;
cucagaucug gcucuacguu guccucauug uacaugcugu guguauuugc cacguacaca 60
gcgcaugcaa uguggacaua auggagcuca 90
//
ID gga-mir-1306 standard; RNA; GGA; 69 BP.
XX
AC MI0007057;
XX
DE Gallus gallus miR-1306 stem-loop
XX
RN [1]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100316018; MIR1306.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..28
FT /accession="MIMAT0026763"
FT /product="gga-miR-1306-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 42..64
FT /accession="MIMAT0007329"
FT /product="gga-miR-1306-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 69 BP; 15 A; 20 C; 20 G; 0 T; 14 other;
uccaccaccu ccccugcaaa cguccaguga cgcagaggua auggacguug gcucuggugg 60
ugauggaca 69
//
ID cin-mir-1497 standard; RNA; CIN; 104 BP.
XX
AC MI0007130;
XX
DE Ciona intestinalis miR-1497 stem-loop
XX
RN [1]
RX PUBMED; 18339653.
RA Fu X, Adamski M, Thompson EM;
RT "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica";
RL Mol Biol Evol. 25:1067-1080(2008).
XX
RN [2]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100187691; mir1497.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..43
FT /accession="MIMAT0015246"
FT /product="cin-miR-1497-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 67..89
FT /accession="MIMAT0006068"
FT /product="cin-miR-1497-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0007110"
XX
SQ Sequence 104 BP; 22 A; 25 C; 27 G; 0 T; 30 other;
gccggaaucu ggcuguuagc gcaaccacuu gugaaucucc aacacucggc uuuguccacg 60
acuuuguuga agaauugcag gugguaggug cuuucaagcc guau 104
//
ID cin-let-7b standard; RNA; CIN; 109 BP.
XX
AC MI0007151;
XX
DE Ciona intestinalis let-7b stem-loop
XX
RN [1]
RX PUBMED; 18339653.
RA Fu X, Adamski M, Thompson EM;
RT "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica";
RL Mol Biol Evol. 25:1067-1080(2008).
XX
RN [2]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100187674; mirlet7b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0006087"
FT /product="cin-let-7b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001870"
FT miRNA 63..84
FT /accession="MIMAT0015249"
FT /product="cin-let-7b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 109 BP; 28 A; 25 C; 22 G; 0 T; 34 other;
agguacaccu gcuguugagg uaguagguua uguuguugca cauaauacug cauuggagau 60
acaccaugac cuucuaaccu cugcaccaug ucuaucacuu ucaacaugg 109
//
ID cin-mir-92a standard; RNA; CIN; 101 BP.
XX
AC MI0007160;
XX
DE Ciona intestinalis miR-92a stem-loop
XX
RN [1]
RX PUBMED; 18047675.
RA Norden-Krichmar TM, Holtz J, Pasquinelli AE, Gaasterland T;
RT "Computational prediction and experimental validation of Ciona
RT intestinalis microRNA genes";
RL BMC Genomics. 8:445(2007).
XX
RN [2]
RX PUBMED; 18339653.
RA Fu X, Adamski M, Thompson EM;
RT "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica";
RL Mol Biol Evol. 25:1067-1080(2008).
XX
RN [3]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100187676; mir92a.
XX
CC Norden-Krichmar et al refer to this sequence as mir-25 [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 36..55
FT /accession="MIMAT0015253"
FT /product="cin-miR-92a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 66..86
FT /accession="MIMAT0006096"
FT /product="cin-miR-92a-3p"
FT /evidence=experimental
FT /experiment="Northern [1], Illumina [3]"
XX
SQ Sequence 101 BP; 29 A; 15 C; 26 G; 0 T; 31 other;
gaagcuuuag ugaaguuuga uuauauauua cucgacggcu gguacaagag cacgaucgau 60
uaggauauug cacuuguccc ggucuuaggg ugguauaaaa a 101
//
ID cin-mir-92b standard; RNA; CIN; 101 BP.
XX
AC MI0007161;
XX
DE Ciona intestinalis miR-92b stem-loop
XX
RN [1]
RX PUBMED; 18339653.
RA Fu X, Adamski M, Thompson EM;
RT "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica";
RL Mol Biol Evol. 25:1067-1080(2008).
XX
RN [2]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100187675; mir92b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..49
FT /accession="MIMAT0015254"
FT /product="cin-miR-92b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 66..86
FT /accession="MIMAT0006097"
FT /product="cin-miR-92b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0007143"
XX
SQ Sequence 101 BP; 26 A; 24 C; 19 G; 0 T; 32 other;
aaaaagcucc auuuucgcag uuuacuugca gguuuggacc ggugcaccag auuauauaag 60
auuucuauug cacuuguccc ggccuucaaa uacugcugaa c 101
//
ID cin-mir-92c standard; RNA; CIN; 101 BP.
XX
AC MI0007162;
XX
DE Ciona intestinalis miR-92c stem-loop
XX
RN [1]
RX PUBMED; 18339653.
RA Fu X, Adamski M, Thompson EM;
RT "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica";
RL Mol Biol Evol. 25:1067-1080(2008).
XX
RN [2]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100187681; mir92c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 32..51
FT /accession="MIMAT0015255"
FT /product="cin-miR-92c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 66..87
FT /accession="MIMAT0006098"
FT /product="cin-miR-92c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0007143"
XX
SQ Sequence 101 BP; 24 A; 24 C; 22 G; 0 T; 31 other;
ucccaaacuu auaaacugua ccugcauacu uaggccuggc gaagugcauu gcguugucau 60
ggucguauug cacucguccc ggucuaugua ucugguaaaa a 101
//
ID cin-mir-124-1 standard; RNA; CIN; 77 BP.
XX
AC MI0007164;
XX
DE Ciona intestinalis miR-124-1 stem-loop
XX
RN [1]
RX PUBMED; 18339653.
RA Fu X, Adamski M, Thompson EM;
RT "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica";
RL Mol Biol Evol. 25:1067-1080(2008).
XX
RN [2]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100187687; mir124-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..30
FT /accession="MIMAT0015256"
FT /product="cin-miR-124-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 47..68
FT /accession="MIMAT0006100"
FT /product="cin-miR-124-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0007145"
XX
SQ Sequence 77 BP; 18 A; 13 C; 20 G; 0 T; 26 other;
uauguucggu aguauuuauu guggaccuug cugugugacg ucacaauaag gcacgcggug 60
aaugccaacg aauuuuu 77
//
ID cin-mir-124-2 standard; RNA; CIN; 99 BP.
XX
AC MI0007165;
XX
DE Ciona intestinalis miR-124-2 stem-loop
XX
RN [1]
RX PUBMED; 18339653.
RA Fu X, Adamski M, Thompson EM;
RT "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica";
RL Mol Biol Evol. 25:1067-1080(2008).
XX
RN [2]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100187695; mir124-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..47
FT /accession="MIMAT0015257"
FT /product="cin-miR-124-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 64..85
FT /accession="MIMAT0006100"
FT /product="cin-miR-124-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0007145"
XX
SQ Sequence 99 BP; 25 A; 21 C; 27 G; 0 T; 26 other;
cguaauauuu aaagggcgcu uaugagucgu guuuacugug gaccuugcug ugugacguca 60
caauaaggca cgcggugaau gccaaucaaa agucgccgc 99
//
ID cin-mir-133 standard; RNA; CIN; 101 BP.
XX
AC MI0007167;
XX
DE Ciona intestinalis miR-133 stem-loop
XX
RN [1]
RX PUBMED; 18339653.
RA Fu X, Adamski M, Thompson EM;
RT "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica";
RL Mol Biol Evol. 25:1067-1080(2008).
XX
RN [2]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100187697; mir133.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..43
FT /accession="MIMAT0015259"
FT /product="cin-miR-133-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 66..86
FT /accession="MIMAT0006102"
FT /product="cin-miR-133-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001994"
XX
SQ Sequence 101 BP; 24 A; 25 C; 25 G; 0 T; 27 other;
agaaaacauu gcgggugucg gucguuggua aaguggaauc aaaccuuacg guuuuagucc 60
augguuuggu ccccuucaac cagcugcugc uaccacgcac a 101
//
ID cin-mir-141 standard; RNA; CIN; 75 BP.
XX
AC MI0007168;
XX
DE Ciona intestinalis miR-141 stem-loop
XX
RN [1]
RX PUBMED; 18047675.
RA Norden-Krichmar TM, Holtz J, Pasquinelli AE, Gaasterland T;
RT "Computational prediction and experimental validation of Ciona
RT intestinalis microRNA genes";
RL BMC Genomics. 8:445(2007).
XX
RN [2]
RX PUBMED; 18339653.
RA Fu X, Adamski M, Thompson EM;
RT "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica";
RL Mol Biol Evol. 25:1067-1080(2008).
XX
RN [3]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100187669; mir141.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..26
FT /accession="MIMAT0015260"
FT /product="cin-miR-141-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 40..61
FT /accession="MIMAT0006103"
FT /product="cin-miR-141-3p"
FT /evidence=experimental
FT /experiment="Northern [1], Illumina [3]"
XX
SQ Sequence 75 BP; 17 A; 12 C; 18 G; 0 T; 28 other;
ugguguaucu uggucauaua guguuguaga uucaugaucu aacacugucu gguaaagaug 60
cauucgacgu gucuc 75
//
ID cin-mir-200 standard; RNA; CIN; 86 BP.
XX
AC MI0007175;
XX
DE Ciona intestinalis miR-200 stem-loop
XX
RN [1]
RX PUBMED; 18047675.
RA Norden-Krichmar TM, Holtz J, Pasquinelli AE, Gaasterland T;
RT "Computational prediction and experimental validation of Ciona
RT intestinalis microRNA genes";
RL BMC Genomics. 8:445(2007).
XX
RN [2]
RX PUBMED; 18339653.
RA Fu X, Adamski M, Thompson EM;
RT "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica";
RL Mol Biol Evol. 25:1067-1080(2008).
XX
RN [3]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100187685; mir200.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..35
FT /accession="MIMAT0015263"
FT /product="cin-miR-200-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 50..71
FT /accession="MIMAT0006110"
FT /product="cin-miR-200-3p"
FT /evidence=experimental
FT /experiment="Northern [1], Illumina [3]"
XX
SQ Sequence 86 BP; 21 A; 18 C; 23 G; 0 T; 24 other;
uucgugccaa ccgaaucacc aaccacguag uaucggagca uugugugucu aauacugccu 60
gguaauggug auugggugga uacgua 86
//
ID cin-mir-217 standard; RNA; CIN; 103 BP.
XX
AC MI0007177;
XX
DE Ciona intestinalis miR-217 stem-loop
XX
RN [1]
RX PUBMED; 18339653.
RA Fu X, Adamski M, Thompson EM;
RT "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica";
RL Mol Biol Evol. 25:1067-1080(2008).
XX
DR ENTREZGENE; 100187680; mir217.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0006112"
FT /product="cin-miR-217"
FT /evidence=not_experimental
FT /similarity="MI0000293"
XX
SQ Sequence 103 BP; 32 A; 21 C; 17 G; 0 T; 33 other;
auaguugucg ugauuuacug cauuaggaac ugauuggucc aaaaaccucc aaucauaucc 60
uugugcauua uauuucggga acgacucacu ucaaaguuaa aca 103
//
ID cin-mir-219 standard; RNA; CIN; 102 BP.
XX
AC MI0007178;
XX
DE Ciona intestinalis miR-219 stem-loop
XX
RN [1]
RX PUBMED; 18339653.
RA Fu X, Adamski M, Thompson EM;
RT "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica";
RL Mol Biol Evol. 25:1067-1080(2008).
XX
RN [2]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100187679; mir219.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0006113"
FT /product="cin-miR-219-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000358"
FT miRNA 51..70
FT /accession="MIMAT0015264"
FT /product="cin-miR-219-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 102 BP; 29 A; 22 C; 21 G; 0 T; 30 other;
auggcgucug uuucgugauu guccaaacgc aagcucaguu uuaaaauacu gcgauugugu 60
cuggacaucu caaaucagaa ggcugcuguc uucaaaaacc aa 102
//
ID hsa-mir-1537 standard; RNA; HSA; 61 BP.
XX
AC MI0007258;
XX
DE Homo sapiens miR-1537 stem-loop
XX
RN [1]
RX PUBMED; 18524951.
RA Azuma-Mukai A, Oguri H, Mituyama T, Qian ZR, Asai K, Siomi H, Siomi MC;
RT "Characterization of endogenous human Argonautes and their miRNA partners
RT in RNA silencing";
RL Proc Natl Acad Sci U S A. 105:7964-7969(2008).
XX
RN [2]
RX PUBMED; 20300190.
RA Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons
RA PG, Schmidt C, Sturm RA, Hayward NK;
RT "Characterization of the Melanoma miRNAome by Deep Sequencing";
RL PLoS One. 5:e9685(2010).
XX
RN [3]
RX PUBMED; 23226537.
RA Ple H, Landry P, Benham A, Coarfa C, Gunaratne PH, Provost P;
RT "The repertoire and features of human platelet microRNAs";
RL PLoS One. 7:e50746(2012).
XX
DR HGNC; 35381; MIR1537.
DR ENTREZGENE; 100302139; MIR1537.
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..24
FT /accession="MIMAT0026765"
FT /product="hsa-miR-1537-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 40..61
FT /accession="MIMAT0007399"
FT /product="hsa-miR-1537-3p"
FT /evidence=experimental
FT /experiment="ChIP-seq [1], Illumina [2]"
XX
SQ Sequence 61 BP; 16 A; 14 C; 11 G; 0 T; 20 other;
acagcuguaa uuagucaguu uucuguccug uccacacaga aaaccgucua guuacaguug 60
u 61
//
ID mdo-mir-1542-1 standard; RNA; MDO; 72 BP.
XX
AC MI0007265;
XX
DE Monodelphis domestica miR-1542-1 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315606; MIR1542-1.
XX
CC This sequence is referred to by the unofficial identifier Mdo-172a in [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0026766"
FT /product="mdo-miR-1542-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 47..67
FT /accession="MIMAT0006141"
FT /product="mdo-miR-1542-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
XX
SQ Sequence 72 BP; 19 A; 15 C; 13 G; 0 T; 25 other;
ccggugccug gcacauagga guuucauaaa uguauuuuca uuaauuuauu gaucuccaau 60
gccuagcaca gu 72
//
ID mdo-mir-1542-2 standard; RNA; MDO; 80 BP.
XX
AC MI0007266;
XX
DE Monodelphis domestica miR-1542-2 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315607; MIR1542-2.
XX
CC This sequence is referred to by the unofficial identifier Mdo-172b in [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..34
FT /accession="MIMAT0031061"
FT /product="mdo-miR-1542-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 51..71
FT /accession="MIMAT0006141"
FT /product="mdo-miR-1542-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
XX
SQ Sequence 80 BP; 19 A; 16 C; 17 G; 0 T; 28 other;
uaguacagug ccuggcacau aggagcuuca uaaaugugug uugauuuauu uauugaucuc 60
caaugccuag cacugugccu 80
//
ID mdo-mir-340 standard; RNA; MDO; 101 BP.
XX
AC MI0007268;
XX
DE Monodelphis domestica miR-340 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315647; MIR340.
XX
CC This sequence is referred to by the unofficial identifier Mdo-182 in [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..48
FT /accession="MIMAT0006143"
FT /product="mdo-miR-340-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
FT miRNA 61..82
FT /accession="MIMAT0026767"
FT /product="mdo-miR-340-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 101 BP; 31 A; 14 C; 21 G; 0 T; 35 other;
uggacgguga ucaaggugug acuauaaagu aaugagauug auuucugugg uauaguaaau 60
ggaaaucagu uucauuaccu uacagucaca ucuaaucuuc u 101
//
ID mdo-mir-1544a standard; RNA; MDO; 82 BP.
XX
AC MI0007269;
XX
DE Monodelphis domestica miR-1544a stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315609; MIR1544.
XX
CC This sequence is referred to by the unofficial identifier Mdo-202a in [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0006144"
FT /product="mdo-miR-1544a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
FT miRNA 51..73
FT /accession="MIMAT0026768"
FT /product="mdo-miR-1544a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 82 BP; 13 A; 28 C; 22 G; 0 T; 19 other;
agcagcugcc ccugcaccca gggauaggau agcgguucac uuggaagccc ccuuuucuau 60
cccugguacu ggcgccgcug cu 82
//
ID mdo-mir-1545a standard; RNA; MDO; 72 BP.
XX
AC MI0007270;
XX
DE Monodelphis domestica miR-1545a stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315610; MIR1545.
XX
CC This sequence is referred to by the unofficial identifier Mdo-253a in [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0026769"
FT /product="mdo-miR-1545a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 46..66
FT /accession="MIMAT0006145"
FT /product="mdo-miR-1545a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
XX
SQ Sequence 72 BP; 17 A; 21 C; 16 G; 0 T; 18 other;
ccggacacag ugcgcaggga uagauaagag gucacuuuag aauccacuuu ccaucccuug 60
cacuguuucc gc 72
//
ID mdo-mir-1546 standard; RNA; MDO; 89 BP.
XX
AC MI0007271;
XX
DE Monodelphis domestica miR-1546 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315641; MIR1546.
XX
CC This sequence is referred to by the unofficial identifier Mdo-254 in [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0006146"
FT /product="mdo-miR-1546-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
FT miRNA 55..76
FT /accession="MIMAT0026770"
FT /product="mdo-miR-1546-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 89 BP; 24 A; 24 C; 18 G; 0 T; 23 other;
augccuugcc ggaaaucagg gauucucagg gauggaagug agacaaaaua ccuuccaccu 60
cucagaaucc cuauuuucuu ucaaggccc 89
//
ID mdo-mir-1547 standard; RNA; MDO; 91 BP.
XX
AC MI0007272;
XX
DE Monodelphis domestica miR-1547 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315611; MIR1547.
XX
CC This sequence is referred to by the unofficial identifier Mdo-302 in [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0006147"
FT /product="mdo-miR-1547-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
FT miRNA 57..78
FT /accession="MIMAT0026771"
FT /product="mdo-miR-1547-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 91 BP; 20 A; 17 C; 23 G; 0 T; 31 other;
uaaagaacgu augauguauc agagucuugg guccuugugu agaugcuuug agacuucaag 60
gaucccugac uugaucauug uggguucucc c 91
//
ID mdo-mir-1548 standard; RNA; MDO; 60 BP.
XX
AC MI0007273;
XX
DE Monodelphis domestica miR-1548 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315633; MIR1548.
XX
CC This sequence is referred to by the unofficial identifier Mdo-305 in [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..27
FT /accession="MIMAT0026772"
FT /product="mdo-miR-1548-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 37..58
FT /accession="MIMAT0006148"
FT /product="mdo-miR-1548-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
XX
SQ Sequence 60 BP; 7 A; 20 C; 24 G; 0 T; 9 other;
gaggagggcu ccagcgggca cgcacgcggg cuggugugca uccugcagcg ggcuccccuu 60
//
ID mdo-mir-1549 standard; RNA; MDO; 63 BP.
XX
AC MI0007274;
XX
DE Monodelphis domestica miR-1549 stem-loop
XX
RN [1]
RX PUBMED; 17965199.
RA Devor EJ, Samollow PB;
RT "In vitro and in silico annotation of conserved and nonconserved microRNAs
RT in the genome of the marsupial Monodelphis domestica";
RL J Hered. 99:66-72(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315648; MIR1549.
XX
CC This sequence is referred to by the unofficial identifier Mdo-315 in [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..24
FT /accession="MIMAT0026773"
FT /product="mdo-miR-1549-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 40..60
FT /accession="MIMAT0006149"
FT /product="mdo-miR-1549-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
XX
SQ Sequence 63 BP; 8 A; 18 C; 19 G; 0 T; 18 other;
cucgccgggc ucguagguag aagcugaguu uuguuuugcu uccgcccugc aagcccggua 60
gcu 63
//
ID gga-mir-1552 standard; RNA; GGA; 83 BP.
XX
AC MI0007277;
XX
DE Gallus gallus miR-1552 stem-loop
XX
RN [1]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
DR ENTREZGENE; 100315905; MIR1552.
XX
CC This sequence does not map exactly to the galGal4.0 chicken genome
CC assembly, but is annotated based on a Trace Achive sequence (rzq50a05.g1).
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0007407"
FT /product="gga-miR-1552-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 53..73
FT /accession="MIMAT0007408"
FT /product="gga-miR-1552-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 83 BP; 15 A; 20 C; 29 G; 0 T; 19 other;
ucuacauggg gagguuagug cgcgguaagc uaggguguga gcugacagca cgcuagcugc 60
ucugcacuga cugccccugu gga 83
//
ID gga-mir-1560 standard; RNA; GGA; 104 BP.
XX
AC MI0007285;
XX
DE Gallus gallus miR-1560 stem-loop
XX
RN [1]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
DR ENTREZGENE; 100315906; MIR1560.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0007417"
FT /product="gga-miR-1560-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 61..82
FT /accession="MIMAT0007418"
FT /product="gga-miR-1560-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 104 BP; 13 A; 31 C; 37 G; 0 T; 23 other;
uccuuaguca cugcgugggg guggcggcgc gagcagagag gcgcugccgu guccaaagca 60
gcaucucugg acgcgcucgu uccuucugcg uggcuccgcu ugga 104
//
ID gga-mir-1651 standard; RNA; GGA; 84 BP.
XX
AC MI0007383;
XX
DE Gallus gallus miR-1651 stem-loop
XX
RN [1]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
DR ENTREZGENE; 100315880; MIR1651.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0007529"
FT /product="gga-miR-1651-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 51..72
FT /accession="MIMAT0007530"
FT /product="gga-miR-1651-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 84 BP; 20 A; 16 C; 24 G; 0 T; 24 other;
uccagggggu ggaagcuaag acugauaaaa gcaagcaaau uauuuacagu uugcuuuugu 60
uggccucugc ugccgggucc ugga 84
//
ID gga-mir-1663 standard; RNA; GGA; 102 BP.
XX
AC MI0007397;
XX
DE Gallus gallus miR-1663 stem-loop
XX
RN [1]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
DR ENTREZGENE; 100315771; MIR1663.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..40
FT /accession="MIMAT0007544"
FT /product="gga-miR-1663-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 57..77
FT /accession="MIMAT0007545"
FT /product="gga-miR-1663-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 102 BP; 18 A; 27 C; 35 G; 0 T; 22 other;
uucgggaggg caguguuggg uaccacuguc cugggugccu ggcagagcuc gugcacuggc 60
auccagaaca gcgguaccca agguugcuca cgugcuacug ga 102
//
ID gga-mir-1677 standard; RNA; GGA; 73 BP.
XX
AC MI0007411;
XX
DE Gallus gallus miR-1677 stem-loop
XX
RN [1]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
DR ENTREZGENE; 100315778; MIR1677.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0007562"
FT /product="gga-miR-1677-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 45..66
FT /accession="MIMAT0007563"
FT /product="gga-miR-1677-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 73 BP; 18 A; 14 C; 20 G; 0 T; 21 other;
agggucugau ccugcaccgc ugaagucaau ggaaguuuug ucauugacuu caguaggagc 60
aggauuugaa ccu 73
//
ID gga-mir-1720 standard; RNA; GGA; 65 BP.
XX
AC MI0007457;
XX
DE Gallus gallus miR-1720 stem-loop
XX
RN [1]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
DR ENTREZGENE; 100315802; MIR1720.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0007617"
FT /product="gga-miR-1720-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 43..64
FT /accession="MIMAT0007618"
FT /product="gga-miR-1720-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 65 BP; 16 A; 16 C; 19 G; 0 T; 14 other;
uucugaucac cucggacguu gcuuugguga caacccggag caaagcaacg agaggucggu 60
cugaa 65
//
ID gga-mir-1728 standard; RNA; GGA; 96 BP.
XX
AC MI0007466;
XX
DE Gallus gallus miR-1728 stem-loop
XX
RN [1]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
DR ENTREZGENE; 100315807; MIR1728.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0007627"
FT /product="gga-miR-1728-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 62..83
FT /accession="MIMAT0007628"
FT /product="gga-miR-1728-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 96 BP; 26 A; 16 C; 27 G; 0 T; 27 other;
gugaauuagu ucaucugguu gauccauugg aagacugagc uugaggguga aagagguaaa 60
caggcuucug uagaucagcc agcugaccug auucau 96
//
ID gga-mir-1729 standard; RNA; GGA; 71 BP.
XX
AC MI0007468;
XX
DE Gallus gallus miR-1729 stem-loop
XX
RN [1]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
DR ENTREZGENE; 100315925; MIR1729.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0007629"
FT /product="gga-miR-1729-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 47..68
FT /accession="MIMAT0007630"
FT /product="gga-miR-1729-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 71 BP; 17 A; 16 C; 18 G; 0 T; 20 other;
ccugcauccc uuacucacau gaguagucgu aucuauuuca gugggacuac ucggugagua 60
aggauagcag g 71
//
ID gga-mir-1803 standard; RNA; GGA; 89 BP.
XX
AC MI0007548;
XX
DE Gallus gallus miR-1803 stem-loop
XX
RN [1]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
DR ENTREZGENE; 100315849; MIR1803.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..72
FT /accession="MIMAT0007720"
FT /product="gga-miR-1803"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 89 BP; 17 A; 20 C; 24 G; 0 T; 28 other;
ggacuuaggg caugauccag agcccauugu agucaauggg agucuuuuuc cauugacuuc 60
agcgggguuu ggaucaggcc uuuacuucc 89
//
ID gga-mir-1805 standard; RNA; GGA; 84 BP.
XX
AC MI0007550;
XX
DE Gallus gallus miR-1805 stem-loop
XX
RN [1]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
DR ENTREZGENE; 100316000; MIR1805.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0007722"
FT /product="gga-miR-1805-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 53..73
FT /accession="MIMAT0007723"
FT /product="gga-miR-1805-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 84 BP; 23 A; 19 C; 18 G; 0 T; 24 other;
ggaauauucu gggaguugua gucuuucaaa cagagcuuug caaggacaua ccuguauugg 60
aacacuacag cucccugaac uucc 84
//
ID gga-mir-101-2 standard; RNA; GGA; 76 BP.
XX
AC MI0007558;
XX
DE Gallus gallus miR-101-2 stem-loop
XX
RN [1]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [2]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315854; MIR101-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..34
FT /accession="MIMAT0031077"
FT /product="gga-miR-101-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 48..69
FT /accession="MIMAT0001185"
FT /product="gga-miR-101-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
XX
SQ Sequence 76 BP; 17 A; 16 C; 21 G; 0 T; 22 other;
gcugcccugg cucaguuauc acagugcuga ugcugucucu uguaaaggua caguacugug 60
auaacugaag gauggc 76
//
ID gga-mir-10a standard; RNA; GGA; 74 BP.
XX
AC MI0007559;
XX
DE Gallus gallus miR-10a stem-loop
XX
RN [1]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
RN [2]
RX PUBMED; 18511220.
RA Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH;
RT "Identification of novel chicken microRNAs and analysis of their genomic
RT organization";
RL Gene. 418:34-40(2008).
XX
DR ENTREZGENE; 100315855; MIR10A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0007731"
FT /product="gga-miR-10a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1], cloned [2]"
FT miRNA 49..69
FT /accession="MIMAT0007732"
FT /product="gga-miR-10a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 74 BP; 22 A; 10 C; 19 G; 0 T; 23 other;
cuauauguac ccuguagauc cgaauuugug uaaaggaagu ugggucacaa auucguaucu 60
aggggaauau guag 74
//
ID gga-mir-146c standard; RNA; GGA; 129 BP.
XX
AC MI0007561;
XX
DE Gallus gallus miR-146c stem-loop
XX
RN [1]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
DR ENTREZGENE; 100316002; MIR146C-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 34..56
FT /accession="MIMAT0007735"
FT /product="gga-miR-146c-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 76..97
FT /accession="MIMAT0007736"
FT /product="gga-miR-146c-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 129 BP; 32 A; 31 C; 27 G; 0 T; 39 other;
gaagauguga cgaaucuugg caguucccag cucugagaac ugaauuccau ggacugguuu 60
caauuccaug cguucagucc augguauuca guucucuagc uuggcugcau caaacuucac 120
aacugcuaa 129
//
ID gga-mir-193a standard; RNA; GGA; 77 BP.
XX
AC MI0007564;
XX
DE Gallus gallus miR-193a stem-loop
XX
RN [1]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
RN [2]
RX PUBMED; 18511220.
RA Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH;
RT "Identification of novel chicken microRNAs and analysis of their genomic
RT organization";
RL Gene. 418:34-40(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315937; MIR193A.
XX
CC This sequence does not map exactly to the galGal4.0 chicken genome
CC assembly, but is annotated based on a Trace Achive sequence
CC (J_AD0537A21_t807e807.b2).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0026787"
FT /product="gga-miR-193a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 48..69
FT /accession="MIMAT0007740"
FT /product="gga-miR-193a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1,3], cloned [2], Northern [2]"
XX
SQ Sequence 77 BP; 13 A; 18 C; 26 G; 0 T; 20 other;
agcugagggc ugggucuuug cgggcgagau gagagguucg ugucuucaac uggccuacaa 60
agucccaguu cucggcu 77
//
ID gga-mir-301b standard; RNA; GGA; 90 BP.
XX
AC MI0007565;
XX
DE Gallus gallus miR-301b stem-loop
XX
RN [1]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
RN [2]
RX PUBMED; 18511220.
RA Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH;
RT "Identification of novel chicken microRNAs and analysis of their genomic
RT organization";
RL Gene. 418:34-40(2008).
XX
DR ENTREZGENE; 100315858; MIR301B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0007741"
FT /product="gga-miR-301b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 54..78
FT /accession="MIMAT0007742"
FT /product="gga-miR-301b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], Northern [2]"
XX
SQ Sequence 90 BP; 26 A; 19 C; 19 G; 0 T; 26 other;
guugcugcua acgaaugcuc ugacuuuauu gcacuacugu acuucacagc uagcagugca 60
auaguauugu caaagcaucu gaaagcagag 90
//
ID mml-let-7a-1 standard; RNA; MML; 80 BP.
XX
AC MI0007570;
XX
DE Macaca mulatta let-7a-1 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315501; MIRLET7A-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0006151"
FT /product="mml-let-7a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000060"
XX
SQ Sequence 80 BP; 21 A; 15 C; 19 G; 0 T; 25 other;
ugggaugagg uaguagguug uauaguuuua gggucacacc caccacuggg agauaacuau 60
acaaucuacu gucuuuccua 80
//
ID mml-let-7a-2 standard; RNA; MML; 72 BP.
XX
AC MI0007571;
XX
DE Macaca mulatta let-7a-2 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315170; MIRLET7A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0006151"
FT /product="mml-let-7a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000061"
FT miRNA 50..71
FT /accession="MIMAT0031041"
FT /product="mml-let-7a-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 72 BP; 20 A; 12 C; 18 G; 0 T; 22 other;
aggcugaggu aguagguugu auaguuuaga auuacaucaa gggagauaac uguacagccu 60
ccuagcuuuc cu 72
//
ID mml-let-7a-3 standard; RNA; MML; 74 BP.
XX
AC MI0007572;
XX
DE Macaca mulatta let-7a-3 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315442; MIRLET7A-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0006151"
FT /product="mml-let-7a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000062"
FT miRNA 52..73
FT /accession="MIMAT0026789"
FT /product="mml-let-7a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 74 BP; 14 A; 13 C; 21 G; 0 T; 26 other;
gggugaggua guagguugua uaguuugggg cucugcccug cuaugggaua acuauacaau 60
cuacugucuu uccu 74
//
ID mml-let-7b standard; RNA; MML; 83 BP.
XX
AC MI0007573;
XX
DE Macaca mulatta let-7b stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315389; MIRLET7B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0006152"
FT /product="mml-let-7b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000063"
FT miRNA 60..81
FT /accession="MIMAT0026790"
FT /product="mml-let-7b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 83 BP; 17 A; 18 C; 25 G; 0 T; 23 other;
cggggugagg uaguagguug ugugguuuca gggcagugau guugccccuc agaagauaac 60
uauacaaccu acugccuucc cug 83
//
ID mml-let-7c standard; RNA; MML; 84 BP.
XX
AC MI0007574;
XX
DE Macaca mulatta let-7c stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315171; MIRLET7C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0006153"
FT /product="mml-let-7c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000064"
FT miRNA 56..77
FT /accession="MIMAT0026791"
FT /product="mml-let-7c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 84 BP; 17 A; 16 C; 24 G; 0 T; 27 other;
gcauccgggu ugagguagua gguuguaugg uuuagaguua cacccuggga guuaacugua 60
caaccuucua gcuuuccuug gagc 84
//
ID mml-let-7d standard; RNA; MML; 87 BP.
XX
AC MI0007575;
XX
DE Macaca mulatta let-7d stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315172; MIRLET7D.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0006154"
FT /product="mml-let-7d"
FT /evidence=not_experimental
FT /similarity="MI0000065"
XX
SQ Sequence 87 BP; 21 A; 16 C; 26 G; 0 T; 24 other;
ccuaggaaga gguaguaggu ugcauaguuu uagggcaggg auuuugccca caaggaggua 60
acuauacgac cugcugccuu ucuuagg 87
//
ID mml-let-7e standard; RNA; MML; 79 BP.
XX
AC MI0007576;
XX
DE Macaca mulatta let-7e stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315502; MIRLET7E.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0006155"
FT /product="mml-let-7e-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000066"
FT miRNA 53..74
FT /accession="MIMAT0026792"
FT /product="mml-let-7e-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 79 BP; 18 A; 20 C; 25 G; 0 T; 16 other;
cccgggcuga gguaggaggu uguauaguug aggaggacac ccaaggagau cacuauacgg 60
ccuccuagcu uuccccagg 79
//
ID mml-let-7f-1 standard; RNA; MML; 87 BP.
XX
AC MI0007577;
XX
DE Macaca mulatta let-7f-1 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315173; MIRLET7F-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0006156"
FT /product="mml-let-7f-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000067"
FT miRNA 63..84
FT /accession="MIMAT0026793"
FT /product="mml-let-7f-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 87 BP; 22 A; 13 C; 22 G; 0 T; 30 other;
ucagagugag guaguagauu guauaguugu gggguaguga uuuuacccug uucaggagau 60
aacuauacaa ucuauugccu ucccuga 87
//
ID mml-let-7f-2 standard; RNA; MML; 83 BP.
XX
AC MI0007578;
XX
DE Macaca mulatta let-7f-2 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315174; MIRLET7F-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0006156"
FT /product="mml-let-7f-5p"
FT /evidence=not_experimental
FT /similarity="MI0000068"
XX
SQ Sequence 83 BP; 20 A; 15 C; 20 G; 0 T; 28 other;
ugugggauga gguaguagau uguauaguuu uagggucaua ccccaucuug gagauaacua 60
uacagucuac ugucuuuccc acg 83
//
ID mml-let-7g standard; RNA; MML; 84 BP.
XX
AC MI0007579;
XX
DE Macaca mulatta let-7g stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315390; MIRLET7G.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0006157"
FT /product="mml-let-7g-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000433"
FT miRNA 62..83
FT /accession="MIMAT0026794"
FT /product="mml-let-7g-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 84 BP; 21 A; 18 C; 24 G; 0 T; 21 other;
aggcugaggu aguaguuugu acaguuugag ggucuaugau accacccggu acaggagaua 60
acuguacagg ccacugccuu gcca 84
//
ID mml-let-7i standard; RNA; MML; 85 BP.
XX
AC MI0007580;
XX
DE Macaca mulatta let-7i stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315443; MIRLET7I.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0006158"
FT /product="mml-let-7i-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000434"
FT miRNA 63..83
FT /accession="MIMAT0026795"
FT /product="mml-let-7i-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 85 BP; 13 A; 17 C; 29 G; 0 T; 26 other;
cuggcugagg uaguaguuug ugcuguuggu cggguuguga cauugcccgc uguggagaua 60
acugcgcaag cuacugccuu gcuag 85
//
ID mml-mir-7-1 standard; RNA; MML; 110 BP.
XX
AC MI0007581;
XX
DE Macaca mulatta miR-7-1 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315175; MIR7-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0006159"
FT /product="mml-miR-7"
FT /evidence=not_experimental
FT /similarity="MI0000263"
XX
SQ Sequence 110 BP; 29 A; 20 C; 25 G; 0 T; 36 other;
uuggauguug gccuaguucu guguggaaga cuagugauuu uguuguuuuu agauaacuaa 60
auugacaaca aaucacaguc ugccauaugg cacaggccau gccucuacag 110
//
ID mml-mir-7-3 standard; RNA; MML; 110 BP.
XX
AC MI0007583;
XX
DE Macaca mulatta miR-7-3 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315504; MIR7-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..53
FT /accession="MIMAT0006159"
FT /product="mml-miR-7"
FT /evidence=not_experimental
FT /similarity="MI0000265"
XX
SQ Sequence 110 BP; 26 A; 24 C; 29 G; 0 T; 31 other;
agauuagagu ggcuaugguc uagugcugug uggaagacua gugauuuugu uguucugaug 60
ugcuacgaca acaaaucaca gccggccuca uagcgcagac ucccuucgac 110
//
ID mml-mir-9-1 standard; RNA; MML; 89 BP.
XX
AC MI0007584;
XX
DE Macaca mulatta miR-9-1 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315176; MIR9-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0006160"
FT /product="mml-miR-9-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000466"
FT miRNA 55..77
FT /accession="MIMAT0026796"
FT /product="mml-miR-9-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 89 BP; 25 A; 13 C; 23 G; 0 T; 28 other;
cgggguuggu uguuaucuuu gguuaucuag cuguaugagu gguguggagu cuucauaaag 60
cuagauaacc gaaaguaaaa auaacccca 89
//
ID mml-mir-9-2 standard; RNA; MML; 87 BP.
XX
AC MI0007585;
XX
DE Macaca mulatta miR-9-2 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315391; MIR9-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0006160"
FT /product="mml-miR-9-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000467"
FT miRNA 53..75
FT /accession="MIMAT0026796"
FT /product="mml-miR-9-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 87 BP; 26 A; 13 C; 19 G; 0 T; 29 other;
ggaagcgagu uguuaucuuu gguuaucuag cuguaugagu guauuggucu ucauaaagcu 60
agauaaccga aaguaaaaac uccuuca 87
//
ID mml-mir-9-3 standard; RNA; MML; 90 BP.
XX
AC MI0007586;
XX
DE Macaca mulatta miR-9-3 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315177; MIR9-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0006160"
FT /product="mml-miR-9-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000468"
FT miRNA 55..76
FT /accession="MIMAT0031078"
FT /product="mml-miR-9-3-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 90 BP; 25 A; 20 C; 21 G; 0 T; 24 other;
ggaggcccgu uucucucuuu gguuaucuag cuguaugagu gccacagagc cgucauaaag 60
cuagauaacc gaaaguagaa augacucuca 90
//
ID mml-mir-10a standard; RNA; MML; 109 BP.
XX
AC MI0007587;
XX
DE Macaca mulatta miR-10a stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315444; MIR10A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0006161"
FT /product="mml-miR-10a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000266"
FT miRNA 64..84
FT /accession="MIMAT0026797"
FT /product="mml-miR-10a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 109 BP; 28 A; 20 C; 23 G; 0 T; 38 other;
gaucugucug ucuucuguau auacccugua gauccgaauu uguguaagga auuuuguggu 60
cacaaauucg uaucuagggg aauauguagu ugacauaaac acuccgcuc 109
//
ID mml-mir-16-2 standard; RNA; MML; 81 BP.
XX
AC MI0007589;
XX
DE Macaca mulatta miR-16-2 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315505; MIR16-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0002651"
FT /product="mml-miR-16-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000115"
FT miRNA 53..74
FT /accession="MIMAT0031018"
FT /product="mml-miR-16-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 81 BP; 24 A; 16 C; 16 G; 0 T; 25 other;
guuccacucu agcagcacgu aaauauuggc guagugaaau auguauuaaa caccaauauu 60
acugugcugc uucaguguga c 81
//
ID mml-mir-23b standard; RNA; MML; 97 BP.
XX
AC MI0007592;
XX
DE Macaca mulatta miR-23b stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315180; MIR23B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0026800"
FT /product="mml-miR-23b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 58..78
FT /accession="MIMAT0006165"
FT /product="mml-miR-23b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000439"
XX
SQ Sequence 97 BP; 21 A; 25 C; 24 G; 0 T; 27 other;
cucaggugcu cuggcugcuu ggguuccugg caugcugauu ugugacuuaa gauuaaaauc 60
acauugccag ggauuaccac gcaaccacga ccuuggc 97
//
ID mml-mir-26a-2 standard; RNA; MML; 84 BP.
XX
AC MI0007593;
XX
DE Macaca mulatta miR-26a-2 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315181; MIR26A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002349"
FT /product="mml-miR-26a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000750"
FT miRNA 52..73
FT /accession="MIMAT0031062"
FT /product="mml-miR-26a-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 84 BP; 15 A; 16 C; 24 G; 0 T; 29 other;
ggcuguggcu ggauucaagu aauccaggau aggcuguuuc caucugugag gccuauucuu 60
gauuacuugu uucuggaggc agcu 84
//
ID mml-mir-26b standard; RNA; MML; 77 BP.
XX
AC MI0007594;
XX
DE Macaca mulatta miR-26b stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315506; MIR26B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0006166"
FT /product="mml-miR-26b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000084"
FT miRNA 47..67
FT /accession="MIMAT0026801"
FT /product="mml-miR-26b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 77 BP; 13 A; 20 C; 23 G; 0 T; 21 other;
ccgggaccca guucaaguaa uucaggauag guugugugcu guccagccug uucuccauua 60
cuuggcucgg ggaccgg 77
//
ID mml-mir-27b standard; RNA; MML; 97 BP.
XX
AC MI0007595;
XX
DE Macaca mulatta miR-27b stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315596; MIR27B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0026802"
FT /product="mml-miR-27b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 61..81
FT /accession="MIMAT0006167"
FT /product="mml-miR-27b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000440"
XX
SQ Sequence 97 BP; 23 A; 19 C; 27 G; 0 T; 28 other;
accucucuaa caaggugcag agcuuagcug auuggugaac agugauuggu uuccgcuuug 60
uucacagugg cuaaguucug caccugaaga gaaggug 97
//
ID mml-mir-29b-1 standard; RNA; MML; 81 BP.
XX
AC MI0007596;
XX
DE Macaca mulatta miR-29b-1 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315182; MIR29B-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..33
FT /accession="MIMAT0026803"
FT /product="mml-miR-29b-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 51..73
FT /accession="MIMAT0006168"
FT /product="mml-miR-29b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000105"
XX
SQ Sequence 81 BP; 19 A; 10 C; 22 G; 0 T; 30 other;
cuucaggaag cugguuucau auggugguuu agauuuaaau agugauuguc uagcaccauu 60
ugaaaucagu guucuugggg g 81
//
ID mml-mir-29b-2 standard; RNA; MML; 81 BP.
XX
AC MI0007597;
XX
DE Macaca mulatta miR-29b-2 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315392; MIR29B-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..33
FT /accession="MIMAT0031079"
FT /product="mml-miR-29b-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 52..74
FT /accession="MIMAT0006168"
FT /product="mml-miR-29b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000107"
XX
SQ Sequence 81 BP; 17 A; 14 C; 18 G; 0 T; 32 other;
cuucuggaag cugguuucac augguggcuu agauuuuucc aucuuuguau cuagcaccau 60
uugaaaucag uguuuuagga g 81
//
ID mml-mir-30c-1 standard; RNA; MML; 89 BP.
XX
AC MI0007599;
XX
DE Macaca mulatta miR-30c-1 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315184; MIR30C-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0006170"
FT /product="mml-miR-30c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000736"
FT miRNA 57..77
FT /accession="MIMAT0026805"
FT /product="mml-miR-30c-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 89 BP; 18 A; 20 C; 25 G; 0 T; 26 other;
accaugcugu agugugugua aacauccuac acucucagcu gugagcucaa gguggcuggg 60
agaggguugu uuacuccuuc ugccaugga 89
//
ID mml-mir-30c-2 standard; RNA; MML; 72 BP.
XX
AC MI0007600;
XX
DE Macaca mulatta miR-30c-2 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315507; MIR30C-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0006170"
FT /product="mml-miR-30c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000254"
FT miRNA 48..68
FT /accession="MIMAT0031117"
FT /product="mml-miR-30c-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 72 BP; 22 A; 15 C; 16 G; 0 T; 19 other;
agauacugua aacauccuac acucucagcu guggaaagua agaaagcugg gagaaggcug 60
uuuacucucu cu 72
//
ID mml-mir-30d standard; RNA; MML; 69 BP.
XX
AC MI0007601;
XX
DE Macaca mulatta miR-30d stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315185; MIR30D.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0006171"
FT /product="mml-miR-30d-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000255"
FT miRNA 46..66
FT /accession="MIMAT0026806"
FT /product="mml-miR-30d-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 69 BP; 18 A; 16 C; 15 G; 0 T; 20 other;
uuguuguaaa cauccccgac uggaagcugu aagacacagc uaagcuuuca gucagauguu 60
ugcugcuac 69
//
ID mml-mir-30e standard; RNA; MML; 92 BP.
XX
AC MI0007602;
XX
DE Macaca mulatta miR-30e stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315186; MIR30E.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0006172"
FT /product="mml-miR-30e-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000749"
FT miRNA 60..80
FT /accession="MIMAT0026807"
FT /product="mml-miR-30e-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 92 BP; 20 A; 20 C; 28 G; 0 T; 24 other;
gggcagucuu cgcuacugua aacauccuug acuggaagcu guaagguguu cagaggagcu 60
uucagucgga uguuuacagc ggcaggcugc ca 92
//
ID mml-mir-33b standard; RNA; MML; 96 BP.
XX
AC MI0007603;
XX
DE Macaca mulatta miR-33b stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315578; MIR33B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..35
FT /accession="MIMAT0006173"
FT /product="mml-miR-33b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003646"
FT miRNA 56..75
FT /accession="MIMAT0026808"
FT /product="mml-miR-33b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 96 BP; 9 A; 32 C; 39 G; 0 T; 16 other;
gcgggcggcc ccgcggugca uugcuguugc auugcacgug ugugaggcgg gugcagugcc 60
ucggcagugc agcccggagc cggccccugg caccgc 96
//
ID mml-mir-34b standard; RNA; MML; 84 BP.
XX
AC MI0007604;
XX
DE Macaca mulatta miR-34b stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315445; MIR34B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..71
FT /accession="MIMAT0006174"
FT /product="mml-miR-34b"
FT /evidence=not_experimental
FT /similarity="MI0000742"
XX
SQ Sequence 84 BP; 21 A; 19 C; 20 G; 0 T; 24 other;
gugcucgguu uguaggcagu gucauuagcu gauuguacug uggugguuac aaucacuaac 60
uccacugcca ucaaaacaag gcac 84
//
ID mml-mir-34c standard; RNA; MML; 77 BP.
XX
AC MI0007605;
XX
DE Macaca mulatta miR-34c stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315187; MIR34C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0006175"
FT /product="mml-miR-34c-5p"
FT /evidence=not_experimental
FT /similarity="MI0000743"
FT miRNA 46..67
FT /accession="MIMAT0006176"
FT /product="mml-miR-34c-3p"
FT /evidence=not_experimental
FT /similarity="MI0000743"
XX
SQ Sequence 77 BP; 25 A; 16 C; 17 G; 0 T; 19 other;
agucuaguua ccaggcagug uaguuagcug auugcugaua guaccaauca cuaaccacac 60
ggccagguaa aaagauu 77
//
ID mml-mir-92b standard; RNA; MML; 96 BP.
XX
AC MI0007607;
XX
DE Macaca mulatta miR-92b stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315188; MIR92B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..43
FT /accession="MIMAT0026810"
FT /product="mml-miR-92b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 61..82
FT /accession="MIMAT0006177"
FT /product="mml-miR-92b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003560"
XX
SQ Sequence 96 BP; 8 A; 39 C; 34 G; 0 T; 15 other;
cgggccccgg gcgggcggga gggacgggac gcggugcagu guuguucuuu cccccgccaa 60
uauugcacuc gucccggccu ccggcccccc cggccc 96
//
ID mml-mir-99b standard; RNA; MML; 70 BP.
XX
AC MI0007609;
XX
DE Macaca mulatta miR-99b stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315393; MIR99B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0006179"
FT /product="mml-miR-99b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000746"
FT miRNA 46..66
FT /accession="MIMAT0026812"
FT /product="mml-miR-99b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 70 BP; 10 A; 26 C; 21 G; 0 T; 13 other;
ggcacccacc cguagaaccg accuugcggg gccuucgccg cacacaagcu cgugucugug 60
gguccguguc 70
//
ID mml-mir-103-2 standard; RNA; MML; 78 BP.
XX
AC MI0007611;
XX
DE Macaca mulatta miR-103-2 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315509; MIR103-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 48..70
FT /accession="MIMAT0002447"
FT /product="mml-miR-103-3p"
FT /evidence=not_experimental
FT /similarity="MI0000108"
XX
SQ Sequence 78 BP; 19 A; 17 C; 18 G; 0 T; 24 other;
uugugcuuuc agcuucuuua cagugcugcc uuguagcauu caggucaagc agcauuguac 60
agggcuauga aagaacca 78
//
ID mml-mir-105-2 standard; RNA; MML; 81 BP.
XX
AC MI0007612;
XX
DE Macaca mulatta miR-105-2 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315446; MIR105-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0002454"
FT /product="mml-miR-105-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000112"
FT miRNA 51..72
FT /accession="MIMAT0026583"
FT /product="mml-miR-105-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 81 BP; 14 A; 17 C; 24 G; 0 T; 26 other;
ugugcaucgu ggucaaaugc ucagacuccu gugguggcug cuuaugcacc acggauguuu 60
gagcaugugc uauggugucu a 81
//
ID mml-mir-124a-2 standard; RNA; MML; 85 BP.
XX
AC MI0007614;
XX
DE Macaca mulatta miR-124a-2 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315192; MIR124A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..35
FT /accession="MIMAT0026585"
FT /product="mml-miR-124a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 52..73
FT /accession="MIMAT0002470"
FT /product="mml-miR-124a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000443"
XX
SQ Sequence 85 BP; 21 A; 21 C; 22 G; 0 T; 21 other;
aggccucucu cuccguguuc acagcggacc uugauuuaaa uguccauaca auuaaggcac 60
gcggugaaug ccaagaaugg ggcug 85
//
ID mml-mir-125a standard; RNA; MML; 86 BP.
XX
AC MI0007615;
XX
DE Macaca mulatta miR-125a stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315394; MIR125A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0006181"
FT /product="mml-miR-125a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000469"
FT miRNA 53..74
FT /accession="MIMAT0006182"
FT /product="mml-miR-125a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000469"
XX
SQ Sequence 86 BP; 13 A; 24 C; 28 G; 0 T; 21 other;
ugccagucuc ugggucccug agacccuuua accugugagg acauccaggg ucacagguga 60
gguucuuggg agccuggcgu cuggcc 86
//
ID mml-mir-126 standard; RNA; MML; 85 BP.
XX
AC MI0007616;
XX
DE Macaca mulatta miR-126 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315193; MIR126.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..73
FT /accession="MIMAT0006183"
FT /product="mml-miR-126"
FT /evidence=not_experimental
FT /similarity="MI0000471"
XX
SQ Sequence 85 BP; 20 A; 20 C; 21 G; 0 T; 24 other;
cgcuggugau gggacauuau uacuuuuggu acgcgcugug acacuucaaa cucguaccgu 60
gaguaauaau gcgcugucca cagca 85
//
ID mml-mir-128b standard; RNA; MML; 84 BP.
XX
AC MI0007617;
XX
DE Macaca mulatta miR-128b stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315510; MIR128B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0026814"
FT /product="mml-miR-128b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 52..72
FT /accession="MIMAT0006184"
FT /product="mml-miR-128b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000727"
XX
SQ Sequence 84 BP; 17 A; 19 C; 28 G; 0 T; 20 other;
ugugcagugg gaaggggggc cgauacacug uacgagagug aguagcaggu cucacaguga 60
accggucucu uucccuacug uguc 84
//
ID mml-mir-129-1 standard; RNA; MML; 72 BP.
XX
AC MI0007618;
XX
DE Macaca mulatta miR-129 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315194; MIR129.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..25
FT /accession="MIMAT0006185"
FT /product="mml-miR-129-5p"
FT /evidence=not_experimental
FT /similarity="MI0000252"
FT miRNA 49..70
FT /accession="MIMAT0006186"
FT /product="mml-miR-129-1-3p"
FT /evidence=not_experimental
FT /similarity="MI0000252"
XX
SQ Sequence 72 BP; 15 A; 19 C; 16 G; 0 T; 22 other;
ggaucuuuuu gcggucuggg cuugcuguuc cucucaacag uagucaggaa gcccuuaccc 60
caaaaaguau cu 72
//
ID mml-mir-130b standard; RNA; MML; 82 BP.
XX
AC MI0007619;
XX
DE Macaca mulatta miR-130b stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315195; MIR130B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0026815"
FT /product="mml-miR-130b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 51..72
FT /accession="MIMAT0006187"
FT /product="mml-miR-130b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000748"
XX
SQ Sequence 82 BP; 16 A; 23 C; 25 G; 0 T; 18 other;
ggccugcccg acacucuuuc ccuguugcac uacugugggc cacugggaag cagugcaaug 60
augaaagggc aucggucagg uc 82
//
ID mml-mir-132 standard; RNA; MML; 101 BP.
XX
AC MI0007620;
XX
DE Macaca mulatta miR-132 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315447; MIR132.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0026816"
FT /product="mml-miR-132-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 59..80
FT /accession="MIMAT0006188"
FT /product="mml-miR-132-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000449"
XX
SQ Sequence 101 BP; 17 A; 37 C; 29 G; 0 T; 18 other;
ccgcccccgc gucuccaggg caaccguggc uuucgauugu uacuguggga acuggaggua 60
acagucuaca gccauggucg ccccgcagca cgcccacgcg c 101
//
ID mml-mir-133c standard; RNA; MML; 102 BP.
XX
AC MI0007621;
XX
DE Macaca mulatta miR-133c stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315579; MIR133C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0026817"
FT /product="mml-miR-133c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 59..80
FT /accession="MIMAT0006777"
FT /product="mml-miR-133c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000451"
XX
SQ Sequence 102 BP; 25 A; 24 C; 28 G; 0 T; 25 other;
gggagccaaa ugcuuugcua gagcugguaa aauggaacca aaucgacugu ccaauggauu 60
ugguccccuu caaccagcug uagcugugca uugauggcgc cg 102
//
ID mml-mir-134 standard; RNA; MML; 73 BP.
XX
AC MI0007623;
XX
DE Macaca mulatta miR-134 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315511; MIR134.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0006190"
FT /product="mml-miR-134-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000474"
FT miRNA 46..68
FT /accession="MIMAT0026819"
FT /product="mml-miR-134-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 73 BP; 12 A; 22 C; 23 G; 0 T; 16 other;
cagggugugu gacugguuga ccagaggggc gugcacugug uucacccugu gggccaccua 60
gucaccaacc cuc 73
//
ID mml-mir-135a-1 standard; RNA; MML; 90 BP.
XX
AC MI0007624;
XX
DE Macaca mulatta miR-135a-1 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315197; MIR135A-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0002251"
FT /product="mml-miR-135a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000452"
FT miRNA 55..76
FT /accession="MIMAT0031029"
FT /product="mml-miR-135a-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 90 BP; 15 A; 22 C; 25 G; 0 T; 28 other;
aggccucgcu guucucuaug gcuuuuuauu ccuaugugau ucuacugcuc acucauauag 60
ggauuggagc cguggcgcac ggcggggaca 90
//
ID mml-mir-135b standard; RNA; MML; 97 BP.
XX
AC MI0007625;
XX
DE Macaca mulatta miR-135b stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315198; MIR135B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0006191"
FT /product="mml-miR-135b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000810"
FT miRNA 55..76
FT /accession="MIMAT0026820"
FT /product="mml-miR-135b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 97 BP; 19 A; 25 C; 26 G; 0 T; 27 other;
cacucugcug uggccuaugg cuuuucauuc cuaugugauu gcugucccaa acucauguag 60
ggcuaaaagc caugggcuac agugaggggc gagcucc 97
//
ID mml-mir-136 standard; RNA; MML; 92 BP.
XX
AC MI0007626;
XX
DE Macaca mulatta miR-136 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315512; MIR136.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0006192"
FT /product="mml-miR-136"
FT /evidence=not_experimental
FT /similarity="MI0000475"
XX
SQ Sequence 92 BP; 19 A; 19 C; 21 G; 0 T; 33 other;
uuggaugagc ccucggagga cuccauuugu uuugaugaug gauucuuaug cuccaucauc 60
gucucaaaug agucuucaga ggguucuauc au 92
//
ID mml-mir-137 standard; RNA; MML; 102 BP.
XX
AC MI0007627;
XX
DE Macaca mulatta miR-137 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315395; MIR137.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..46
FT /accession="MIMAT0026821"
FT /product="mml-miR-137-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 59..81
FT /accession="MIMAT0006193"
FT /product="mml-miR-137-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000454"
XX
SQ Sequence 102 BP; 22 A; 19 C; 31 G; 0 T; 30 other;
gguccucuga cucucuucgg ugacggguau ucuugggugg auaauacgga uuacguuguu 60
auugcuuaag aauacgcgua gucgaggaga guaccagcgg ca 102
//
ID mml-mir-138 standard; RNA; MML; 84 BP.
XX
AC MI0007628;
XX
DE Macaca mulatta miR-138 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315199; MIR138.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..32
FT /accession="MIMAT0006194"
FT /product="mml-miR-138-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000455"
FT miRNA 59..78
FT /accession="MIMAT0026822"
FT /product="mml-miR-138-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 84 BP; 16 A; 25 C; 23 G; 0 T; 20 other;
cguugcugca gcugguguug ugaaucaggc cgacgagcag cgcauccucu uacccggcua 60
uuucacgaca ccaggguugc auca 84
//
ID mml-mir-139 standard; RNA; MML; 68 BP.
XX
AC MI0007629;
XX
DE Macaca mulatta miR-139 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315597; MIR139.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0006195"
FT /product="mml-miR-139-5p"
FT /evidence=not_experimental
FT /similarity="MI0000261"
FT miRNA 44..65
FT /accession="MIMAT0006196"
FT /product="mml-miR-139-3p"
FT /evidence=not_experimental
FT /similarity="MI0000261"
XX
SQ Sequence 68 BP; 11 A; 16 C; 24 G; 0 T; 17 other;
guguauucua cagugcacgu gucuccagug uggcucggag gcuggagacg cggcccuguu 60
ggaguaac 68
//
ID mml-mir-140 standard; RNA; MML; 100 BP.
XX
AC MI0007630;
XX
DE Macaca mulatta miR-140 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315200; MIR140.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0006197"
FT /product="mml-miR-140-5p"
FT /evidence=not_experimental
FT /similarity="MI0000456"
FT miRNA 62..82
FT /accession="MIMAT0006198"
FT /product="mml-miR-140-3p"
FT /evidence=not_experimental
FT /similarity="MI0000456"
XX
SQ Sequence 100 BP; 18 A; 27 C; 27 G; 0 T; 28 other;
ugugucucuc ucuguguccu gccagugguu uuacccuaug guagguuacg ucaugcuguu 60
cuaccacagg guagaaccac ggacaggaua ccggggcacc 100
//
ID mml-mir-142 standard; RNA; MML; 87 BP.
XX
AC MI0007631;
XX
DE Macaca mulatta miR-142 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315201; MIR142.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0006199"
FT /product="mml-miR-142-5p"
FT /evidence=not_experimental
FT /similarity="MI0000458"
FT miRNA 52..74
FT /accession="MIMAT0006200"
FT /product="mml-miR-142-3p"
FT /evidence=not_experimental
FT /similarity="MI0000458"
XX
SQ Sequence 87 BP; 25 A; 16 C; 23 G; 0 T; 23 other;
gacagugcag ucacccauaa aguagaaagc acuacuaaca gcacuggagg guguaguguu 60
uccuacuuua uggaugagug uacugug 87
//
ID mml-mir-143 standard; RNA; MML; 106 BP.
XX
AC MI0007632;
XX
DE Macaca mulatta miR-143 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315513; MIR143.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..47
FT /accession="MIMAT0026823"
FT /product="mml-miR-143-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 61..81
FT /accession="MIMAT0006201"
FT /product="mml-miR-143-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000459"
XX
SQ Sequence 106 BP; 21 A; 25 C; 36 G; 0 T; 24 other;
gcgcagcgcc gugucuccca gccugaggug cagugcugca ucucugguca guugggaguc 60
ugagaugaag cacuguagcu caggaagaga gaaguuguuc ugcagc 106
//
ID mml-mir-144 standard; RNA; MML; 86 BP.
XX
AC MI0007633;
XX
DE Macaca mulatta miR-144 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315396; MIR144.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..71
FT /accession="MIMAT0006202"
FT /product="mml-miR-144"
FT /evidence=not_experimental
FT /similarity="MI0000460"
XX
SQ Sequence 86 BP; 21 A; 19 C; 23 G; 0 T; 23 other;
uggggcccug gcugggauau caucauauac uguaaguuug ugaugagaca cuacaguaua 60
gaugauguac uaguccgggc accccc 86
//
ID mml-mir-146b standard; RNA; MML; 74 BP.
XX
AC MI0007635;
XX
DE Macaca mulatta miR-146b stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315203; MIR146B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0006204"
FT /product="mml-miR-146b-5p"
FT /evidence=not_experimental
FT /similarity="MI0003129"
FT miRNA 45..66
FT /accession="MIMAT0006205"
FT /product="mml-miR-146b-3p"
FT /evidence=not_experimental
FT /similarity="MI0003129"
XX
SQ Sequence 74 BP; 16 A; 20 C; 20 G; 0 T; 18 other;
ccuggcacug agaacugaau uccauaggcu gugagcucua gcaaaugccc uauggacuca 60
guucuggugc ccgg 74
//
ID mml-mir-148a standard; RNA; MML; 68 BP.
XX
AC MI0007638;
XX
DE Macaca mulatta miR-148a stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315205; MIR148A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0026825"
FT /product="mml-miR-148a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 44..65
FT /accession="MIMAT0006208"
FT /product="mml-miR-148a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000253"
XX
SQ Sequence 68 BP; 20 A; 15 C; 16 G; 0 T; 17 other;
gaggcaaagu ucugagacac uccgacucug aguaugauag aagucagugc acuacagaac 60
uuugucuc 68
//
ID mml-mir-148b standard; RNA; MML; 99 BP.
XX
AC MI0007639;
XX
DE Macaca mulatta miR-148b stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315481; MIR148B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..47
FT /accession="MIMAT0026826"
FT /product="mml-miR-148b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 63..84
FT /accession="MIMAT0006209"
FT /product="mml-miR-148b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000811"
XX
SQ Sequence 99 BP; 26 A; 21 C; 22 G; 0 T; 30 other;
caagcacgau uagcauuuga ggugaaguuc uguuauacac ucaggcugug gcucucugaa 60
agucagugca ucacagaacu uugucucgaa agcuuucua 99
//
ID mml-mir-149 standard; RNA; MML; 89 BP.
XX
AC MI0007640;
XX
DE Macaca mulatta miR-149 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315448; MIR149.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0006210"
FT /product="mml-miR-149-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000478"
FT miRNA 55..76
FT /accession="MIMAT0026827"
FT /product="mml-miR-149-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 89 BP; 10 A; 25 C; 38 G; 0 T; 16 other;
gccggcgccc aagcucuggc uccgugucuu cacucccgug uuuguccgag gagggaggga 60
gggacggggg cugugcuggg gcagccgga 89
//
ID mml-mir-150 standard; RNA; MML; 84 BP.
XX
AC MI0007641;
XX
DE Macaca mulatta miR-150 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315206; MIR150.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0006211"
FT /product="mml-miR-150-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000479"
FT miRNA 51..71
FT /accession="MIMAT0026828"
FT /product="mml-miR-150-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 84 BP; 13 A; 30 C; 26 G; 0 T; 15 other;
cuccccaugg cccugucucc caacccuugu accagugcug ggcucagacc cugguacagg 60
ccugggggac agggaccugg ggac 84
//
ID mml-mir-151 standard; RNA; MML; 90 BP.
XX
AC MI0007642;
XX
DE Macaca mulatta miR-151 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315207; MIR151.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0006212"
FT /product="mml-miR-151-5p"
FT /evidence=not_experimental
FT /similarity="MI0000809"
FT miRNA 47..67
FT /accession="MIMAT0006213"
FT /product="mml-miR-151-3p"
FT /evidence=not_experimental
FT /similarity="MI0000809"
XX
SQ Sequence 90 BP; 19 A; 28 C; 19 G; 0 T; 24 other;
uuuccugccc ucgaggagcu cacagucuag uaugucucau ccccuacuag acugaagcuc 60
cuugaggaca gggaugguca uacucaccuc 90
//
ID mml-mir-152 standard; RNA; MML; 87 BP.
XX
AC MI0007643;
XX
DE Macaca mulatta miR-152 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315515; MIR152.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0026829"
FT /product="mml-miR-152-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 54..74
FT /accession="MIMAT0006214"
FT /product="mml-miR-152-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000462"
XX
SQ Sequence 87 BP; 16 A; 29 C; 26 G; 0 T; 16 other;
uguccccccc ggcccagguu cugugauaca cuccgacucg ggcucuggag cagucagugc 60
augacagaac uugggcccgg aaggacc 87
//
ID mml-mir-154 standard; RNA; MML; 84 BP.
XX
AC MI0007644;
XX
DE Macaca mulatta miR-154 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315208; MIR154.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0006215"
FT /product="mml-miR-154-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000480"
FT miRNA 51..72
FT /accession="MIMAT0026830"
FT /product="mml-miR-154-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 84 BP; 20 A; 16 C; 18 G; 0 T; 30 other;
gagguacuug aagauagguu auccguguug ccuucgcuuu auuugugacg aaucauacac 60
gguugaccua uuuuucagua ccaa 84
//
ID mml-mir-181b-2 standard; RNA; MML; 89 BP.
XX
AC MI0007646;
XX
DE Macaca mulatta miR-181b-2 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315209; MIR181B-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0002623"
FT /product="mml-miR-181b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000683"
FT miRNA 57..75
FT /accession="MIMAT0031042"
FT /product="mml-miR-181b-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 89 BP; 24 A; 21 C; 21 G; 0 T; 23 other;
cugauggcug cacucaacau ucauugcugu cgguggguuu gagucugaau caacucacug 60
aucgaugaau gcaaacugcg gaccaaaca 89
//
ID mml-mir-185 standard; RNA; MML; 82 BP.
XX
AC MI0007649;
XX
DE Macaca mulatta miR-185 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315449; MIR185.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0006219"
FT /product="mml-miR-185-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000482"
FT miRNA 50..70
FT /accession="MIMAT0026831"
FT /product="mml-miR-185-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 82 BP; 12 A; 25 C; 26 G; 0 T; 19 other;
agggcgcgag ggauuggaga gaaaggcagu uccugauggu ccccuccuca ggggcuggcu 60
uuccucuggu ccuucccucc ca 82
//
ID mml-mir-186 standard; RNA; MML; 86 BP.
XX
AC MI0007650;
XX
DE Macaca mulatta miR-186 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315211; MIR186.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0006220"
FT /product="mml-miR-186-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000483"
FT miRNA 55..75
FT /accession="MIMAT0026832"
FT /product="mml-miR-186-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 86 BP; 18 A; 14 C; 18 G; 0 T; 36 other;
ugcuuguaac uuuccaaaga auucuccuuu ugggcuuucu gguuuuauuu uaagcccaaa 60
ggugaauuuc uugggaaguu ugagcu 86
//
ID mml-mir-187 standard; RNA; MML; 109 BP.
XX
AC MI0007651;
XX
DE Macaca mulatta miR-187 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315398; MIR187.
XX
FH Key Location/Qualifiers
FH
FT miRNA 35..55
FT /accession="MIMAT0026833"
FT /product="mml-miR-187-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 71..92
FT /accession="MIMAT0006221"
FT /product="mml-miR-187-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000274"
XX
SQ Sequence 109 BP; 20 A; 33 C; 35 G; 0 T; 21 other;
ggucaggcuc acuaugacac agugugagac cucgggcuac aacacaggac ccgggugcug 60
cucugacccc ucgugucuug uguugcagcc ggagggacgc agguccgca 109
//
ID mml-mir-191 standard; RNA; MML; 92 BP.
XX
AC MI0007653;
XX
DE Macaca mulatta miR-191 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315213; MIR191.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0006223"
FT /product="mml-miR-191-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000465"
FT miRNA 58..79
FT /accession="MIMAT0026834"
FT /product="mml-miR-191-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 92 BP; 16 A; 31 C; 24 G; 0 T; 21 other;
cggcuggaca gcgggcaacg gaaucccaaa agcagcuguu gucuccagag cauuccagcu 60
gcgcuuggau uucguccccu gcucuccugc cu 92
//
ID mml-mir-192 standard; RNA; MML; 110 BP.
XX
AC MI0007654;
XX
DE Macaca mulatta miR-192 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315517; MIR192.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0006224"
FT /product="mml-miR-192-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000234"
FT miRNA 68..88
FT /accession="MIMAT0026835"
FT /product="mml-miR-192-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 110 BP; 22 A; 35 C; 27 G; 0 T; 26 other;
gcugagaccg agugcacagg gcucugaccu augaauugac agccagugcu cucgucuccc 60
cucuggcugc caauuccaua ggucacaggu auguucgccu caaugccagc 110
//
ID mml-mir-193a standard; RNA; MML; 85 BP.
XX
AC MI0007655;
XX
DE Macaca mulatta miR-193a stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315214; MIR193A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0006225"
FT /product="mml-miR-193a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000487"
FT miRNA 52..73
FT /accession="MIMAT0006226"
FT /product="mml-miR-193a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000487"
XX
SQ Sequence 85 BP; 14 A; 22 C; 33 G; 0 T; 16 other;
ggaugggagc ugagggcugg gucuuugcgg gcgagaugag ggugucggau caacuggccu 60
acaaaguccc aguccucggc ccccg 85
//
ID mml-mir-193b standard; RNA; MML; 83 BP.
XX
AC MI0007656;
XX
DE Macaca mulatta miR-193b stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315215; MIR193B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0026836"
FT /product="mml-miR-193b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 51..72
FT /accession="MIMAT0006227"
FT /product="mml-miR-193b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003137"
XX
SQ Sequence 83 BP; 15 A; 16 C; 25 G; 0 T; 27 other;
guggucucag aaucgggguu uugagggcga gaugaguuua uguuuuaucc aacuggcccu 60
caaagucccg cuuuuggggu cau 83
//
ID mml-mir-194-2 standard; RNA; MML; 85 BP.
XX
AC MI0007657;
XX
DE Macaca mulatta miR-194-2 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315580; MIR194-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002727"
FT /product="mml-miR-194-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000732"
FT miRNA 52..72
FT /accession="MIMAT0026837"
FT /product="mml-miR-194-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 85 BP; 13 A; 25 C; 28 G; 0 T; 19 other;
uggcucccgc ccccuguaac agcaacucca uguggaagug uccacugauu ccaguggggc 60
ugcuguuauc uggggcgagg gccgg 85
//
ID mml-mir-195 standard; RNA; MML; 87 BP.
XX
AC MI0007658;
XX
DE Macaca mulatta miR-195 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315450; MIR195.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0006228"
FT /product="mml-miR-195-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000489"
FT miRNA 53..75
FT /accession="MIMAT0026838"
FT /product="mml-miR-195-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 87 BP; 20 A; 21 C; 27 G; 0 T; 19 other;
agcuucccug gcucuagcag cacagaaaua uuggcacagg gaagcaaguc ugccaauauu 60
ggcugugcug cuccaggcag gguggug 87
//
ID mml-mir-196a-2 standard; RNA; MML; 110 BP.
XX
AC MI0007659;
XX
DE Macaca mulatta miR-196a-2 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315518; MIR196A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0002519"
FT /product="mml-miR-196a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000279"
FT miRNA 63..83
FT /accession="MIMAT0026839"
FT /product="mml-miR-196a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 110 BP; 21 A; 21 C; 32 G; 0 T; 36 other;
ugcucgcuca gcugaucugu ggcuuaggua guuucauguu guugggauug aguuuugaac 60
ucggcaacaa gaaacugccu gaguuacauc agucgguuuu cgucgagggc 110
//
ID mml-mir-199a-2 standard; RNA; MML; 71 BP.
XX
AC MI0007662;
XX
DE Macaca mulatta miR-199a-2 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315218; MIR199A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0006231"
FT /product="mml-miR-199a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000242"
FT miRNA 47..68
FT /accession="MIMAT0006232"
FT /product="mml-miR-199a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000242"
XX
SQ Sequence 71 BP; 16 A; 19 C; 18 G; 0 T; 18 other;
gccaacccag uguucagacu accuguucag gaggcucuca acguguacag uagucugcac 60
auugguuagg c 71
//
ID mml-mir-200a standard; RNA; MML; 90 BP.
XX
AC MI0007663;
XX
DE Macaca mulatta miR-200a stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315399; MIR200A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0026842"
FT /product="mml-miR-200a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 54..75
FT /accession="MIMAT0006233"
FT /product="mml-miR-200a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000737"
XX
SQ Sequence 90 BP; 19 A; 27 C; 22 G; 0 T; 22 other;
ccgggccccu gugagcaucu uaccggacag ugcuggauuu cccagcuuga cucuaacacu 60
gucugguaac gauguucaaa ggugacccac 90
//
ID mml-mir-204 standard; RNA; MML; 110 BP.
XX
AC MI0007665;
XX
DE Macaca mulatta miR-204 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315219; MIR204.
XX
FH Key Location/Qualifiers
FH
FT miRNA 33..54
FT /accession="MIMAT0006235"
FT /product="mml-miR-204-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000284"
FT miRNA 71..92
FT /accession="MIMAT0026843"
FT /product="mml-miR-204-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 110 BP; 25 A; 24 C; 29 G; 0 T; 32 other;
ggcuacaguc uuucuucaug ugacucgugg acuucccuuu gucauccuau gccugagaau 60
auaugaagga ggcugggaag gcaaagggac guucaauugu caucacuggc 110
//
ID mml-mir-208a standard; RNA; MML; 71 BP.
XX
AC MI0007668;
XX
DE Macaca mulatta miR-208a stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315221; MIR208A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0026844"
FT /product="mml-miR-208a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 44..65
FT /accession="MIMAT0006238"
FT /product="mml-miR-208a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000251"
XX
SQ Sequence 71 BP; 18 A; 15 C; 20 G; 0 T; 18 other;
ugacaggcga gcuuuuggcc cggguuauac cugaugcuca cguauaagac gagcaaaaag 60
cuuguugguc a 71
//
ID mml-mir-210 standard; RNA; MML; 110 BP.
XX
AC MI0007670;
XX
DE Macaca mulatta miR-210 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315520; MIR210.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..49
FT /accession="MIMAT0026846"
FT /product="mml-miR-210-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 66..87
FT /accession="MIMAT0006240"
FT /product="mml-miR-210-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000286"
XX
SQ Sequence 110 BP; 16 A; 47 C; 33 G; 0 T; 14 other;
acccggcagu cccuccaggc gcagggcagc cccugcccac cgcacacugc gcugccccag 60
acccacugug cgugugacag cggcugaucu gugccugggc agcgcgaccc 110
//
ID mml-mir-212 standard; RNA; MML; 110 BP.
XX
AC MI0007671;
XX
DE Macaca mulatta miR-212 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315222; MIR212.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..53
FT /accession="MIMAT0026847"
FT /product="mml-miR-212-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 71..91
FT /accession="MIMAT0006241"
FT /product="mml-miR-212-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000288"
XX
SQ Sequence 110 BP; 15 A; 49 C; 32 G; 0 T; 14 other;
cggggcaccc cgcccggaca gcgcgccggc accuuggcuc uagacugcuu acugcccggg 60
ccgcccucag uaacagucuc cagucagggc caccgacgcc uggccccgcc 110
//
ID mml-mir-218-1 standard; RNA; MML; 105 BP.
XX
AC MI0007675;
XX
DE Macaca mulatta miR-218-1 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315581; MIR218-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..40
FT /accession="MIMAT0002574"
FT /product="mml-miR-218-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000294"
FT miRNA 63..83
FT /accession="MIMAT0031080"
FT /product="mml-miR-218-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 105 BP; 27 A; 21 C; 26 G; 0 T; 31 other;
aauguagcga gauuuucugu ugugcuugau cuaaccaugu gguugcgagg uaugaguaaa 60
acaugguucc gucaagcacc auggaacguc acgcagcuuu cuaca 105
//
ID mml-mir-219-2 standard; RNA; MML; 97 BP.
XX
AC MI0007676;
XX
DE Macaca mulatta miR-219-2 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315521; MIR219-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0006245"
FT /product="mml-miR-219-5p"
FT /evidence=not_experimental
FT /similarity="MI0000740"
FT miRNA 62..83
FT /accession="MIMAT0006246"
FT /product="mml-miR-219-3p"
FT /evidence=not_experimental
FT /similarity="MI0000740"
XX
SQ Sequence 97 BP; 19 A; 26 C; 29 G; 0 T; 23 other;
acucaggggc uucgccacug auuguccaaa cgcaauucuu guacgagucu gcggccaacc 60
gagaauugug gcuggacauc uguggcugag cuccggg 97
//
ID mml-mir-222 standard; RNA; MML; 110 BP.
XX
AC MI0007680;
XX
DE Macaca mulatta miR-222 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315522; MIR222.
XX
FH Key Location/Qualifiers
FH
FT miRNA 33..51
FT /accession="MIMAT0026849"
FT /product="mml-miR-222-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 69..89
FT /accession="MIMAT0006250"
FT /product="mml-miR-222-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000299"
XX
SQ Sequence 110 BP; 22 A; 27 C; 28 G; 0 T; 33 other;
gcugcuggaa gguauaggua cccucaaugg cucaguagcc aguguagauc cugucuuucg 60
uaaucagcag cuacaucugg cuacuggguc ucugauggca ucuucuagcu 110
//
ID mml-mir-296 standard; RNA; MML; 80 BP.
XX
AC MI0007681;
XX
DE Macaca mulatta miR-296 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315482; MIR296.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0006251"
FT /product="mml-miR-296-5p"
FT /evidence=not_experimental
FT /similarity="MI0000747"
FT miRNA 48..69
FT /accession="MIMAT0006252"
FT /product="mml-miR-296-3p"
FT /evidence=not_experimental
FT /similarity="MI0000747"
XX
SQ Sequence 80 BP; 13 A; 24 C; 24 G; 0 T; 19 other;
aggacccuuc cagagggccc ccccucaauc cuguugugcc uaauucagag gguugggugg 60
aggcucuccu gaagggcucu 80
//
ID mml-mir-299 standard; RNA; MML; 63 BP.
XX
AC MI0007684;
XX
DE Macaca mulatta miR-299 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315452; MIR299.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0006255"
FT /product="mml-miR-299-5p"
FT /evidence=not_experimental
FT /similarity="MI0000744"
FT miRNA 39..60
FT /accession="MIMAT0006256"
FT /product="mml-miR-299-3p"
FT /evidence=not_experimental
FT /similarity="MI0000744"
XX
SQ Sequence 63 BP; 18 A; 13 C; 12 G; 0 T; 20 other;
aagaaauggu uuaccguccc acauacauuu ucaauaugua ugugggacgg uaaaccgcuu 60
cuu 63
//
ID mml-mir-301a standard; RNA; MML; 86 BP.
XX
AC MI0007685;
XX
DE Macaca mulatta miR-301a stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315230; MIR301A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..35
FT /accession="MIMAT0026850"
FT /product="mml-miR-301a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 51..73
FT /accession="MIMAT0006257"
FT /product="mml-miR-301a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000745"
XX
SQ Sequence 86 BP; 26 A; 18 C; 17 G; 0 T; 25 other;
acugcuaacg aaugcucuga cuuuauugca cuacuguacu uuacagcuag cagugcaaua 60
guauugucaa agcaucugaa agcagg 86
//
ID mml-mir-323a standard; RNA; MML; 86 BP.
XX
AC MI0007692;
XX
DE Macaca mulatta miR-323a stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315524; MIR323.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0006264"
FT /product="mml-miR-323a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000807"
FT miRNA 51..71
FT /accession="MIMAT0006265"
FT /product="mml-miR-323a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000807"
XX
SQ Sequence 86 BP; 15 A; 19 C; 24 G; 0 T; 28 other;
uugguacuug gagagaggug guccguggcg cguucgcuuu auuuauggcg cacauuacac 60
ggucgaccuc uuugcaguau cuaauc 86
//
ID mml-mir-324 standard; RNA; MML; 83 BP.
XX
AC MI0007693;
XX
DE Macaca mulatta miR-324 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315402; MIR324.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0006266"
FT /product="mml-miR-324-5p"
FT /evidence=not_experimental
FT /similarity="MI0000813"
FT miRNA 53..72
FT /accession="MIMAT0006267"
FT /product="mml-miR-324-3p"
FT /evidence=not_experimental
FT /similarity="MI0000813"
XX
SQ Sequence 83 BP; 13 A; 26 C; 25 G; 0 T; 19 other;
cugacuaugc cuccccgcau ccccuagggc auugguguaa agcuggagac ccacugcccc 60
aggugcugcu ggggguugua guc 83
//
ID mml-mir-329-1 standard; RNA; MML; 84 BP.
XX
AC MI0007695;
XX
DE Macaca mulatta miR-329-1 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315453; MIR329-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0026852"
FT /product="mml-miR-329-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 52..73
FT /accession="MIMAT0006269"
FT /product="mml-miR-329-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001726"
XX
SQ Sequence 84 BP; 19 A; 15 C; 20 G; 0 T; 30 other;
gugguaccug aagggagguu uucuggguuu cuguuucuuu aaugaggaug aaacacaccu 60
gguuaaccuc uuuuccagua ucaa 84
//
ID mml-mir-329-2 standard; RNA; MML; 80 BP.
XX
AC MI0007696;
XX
DE Macaca mulatta miR-329-2 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315236; MIR329-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0031107"
FT /product="mml-miR-329-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 50..71
FT /accession="MIMAT0006269"
FT /product="mml-miR-329-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001726"
XX
SQ Sequence 80 BP; 16 A; 17 C; 19 G; 0 T; 28 other;
gguaccugaa gggagguuuu cugggucucu guuucuuuac ugaggaugaa acacaccugg 60
uuaaccucuu uuccaguauc 80
//
ID mml-mir-331 standard; RNA; MML; 94 BP.
XX
AC MI0007698;
XX
DE Macaca mulatta miR-331 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315525; MIR331.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..47
FT /accession="MIMAT0006272"
FT /product="mml-miR-331-5p"
FT /evidence=not_experimental
FT /similarity="MI0000812"
FT miRNA 61..81
FT /accession="MIMAT0006273"
FT /product="mml-miR-331-3p"
FT /evidence=not_experimental
FT /similarity="MI0000812"
XX
SQ Sequence 94 BP; 20 A; 24 C; 23 G; 0 T; 27 other;
gaguuugguu uuguuugggu uuguucuagg uaugguccca gggaucccag aucaaaccag 60
gccccugggc cuauccuaga accaaccuaa acuc 94
//
ID mml-mir-335 standard; RNA; MML; 88 BP.
XX
AC MI0007699;
XX
DE Macaca mulatta miR-335 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315403; MIR335.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..32
FT /accession="MIMAT0006274"
FT /product="mml-miR-335-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000816"
FT miRNA 46..67
FT /accession="MIMAT0026853"
FT /product="mml-miR-335-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 88 BP; 24 A; 19 C; 16 G; 0 T; 29 other;
gagcgggggu caagagcaau aacgaaaaau guuugucaua aaccguuuuu cauuauugcu 60
ccugaccucc ucucauuugc uauauuca 88
//
ID mml-mir-337 standard; RNA; MML; 93 BP.
XX
AC MI0007700;
XX
DE Macaca mulatta miR-337 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315238; MIR337.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0006275"
FT /product="mml-miR-337-5p"
FT /evidence=not_experimental
FT /similarity="MI0000806"
FT miRNA 61..82
FT /accession="MIMAT0006276"
FT /product="mml-miR-337-3p"
FT /evidence=not_experimental
FT /similarity="MI0000806"
XX
SQ Sequence 93 BP; 20 A; 21 C; 24 G; 0 T; 28 other;
guagucagua guuggggggu gggaacggcu ucauacagga guugaugcac aguuauccag 60
cuccuauaug augccuuucu ucauccccuu caa 93
//
ID mml-mir-338 standard; RNA; MML; 67 BP.
XX
AC MI0007701;
XX
DE Macaca mulatta miR-338 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315239; MIR338.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0006277"
FT /product="mml-miR-338-5p"
FT /evidence=not_experimental
FT /similarity="MI0000814"
FT miRNA 42..63
FT /accession="MIMAT0006278"
FT /product="mml-miR-338-3p"
FT /evidence=not_experimental
FT /similarity="MI0000814"
XX
SQ Sequence 67 BP; 17 A; 14 C; 16 G; 0 T; 20 other;
ucuccaacaa uauccuggug cugagugaug acucagguga cuccagcauc agugauuuug 60
uugaaga 67
//
ID mml-mir-339 standard; RNA; MML; 94 BP.
XX
AC MI0007702;
XX
DE Macaca mulatta miR-339 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315240; MIR339.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0006279"
FT /product="mml-miR-339-5p"
FT /evidence=not_experimental
FT /similarity="MI0000815"
FT miRNA 50..72
FT /accession="MIMAT0006280"
FT /product="mml-miR-339-3p"
FT /evidence=not_experimental
FT /similarity="MI0000815"
XX
SQ Sequence 94 BP; 9 A; 39 C; 31 G; 0 T; 15 other;
cggggcggcc gcucucccug uccuccagga gcucacgugu gccugccugu gagcgccucg 60
acgacagagc cggcgcccgc cccagugucu gcgc 94
//
ID mml-mir-340 standard; RNA; MML; 95 BP.
XX
AC MI0007703;
XX
DE Macaca mulatta miR-340 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315599; MIR340.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0006281"
FT /product="mml-miR-340-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000802"
FT miRNA 58..80
FT /accession="MIMAT0026854"
FT /product="mml-miR-340-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 95 BP; 22 A; 15 C; 21 G; 0 T; 37 other;
uuguaccugg ugugauuaua aagcaaugag acugauuguc auauguuguu ugugggaucc 60
gucucaguua cuuuauagcc auaccuggua ucuua 95
//
ID mml-mir-342 standard; RNA; MML; 99 BP.
XX
AC MI0007704;
XX
DE Macaca mulatta miR-342 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315526; MIR342.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0006282"
FT /product="mml-miR-342-5p"
FT /evidence=not_experimental
FT /similarity="MI0000805"
FT miRNA 61..83
FT /accession="MIMAT0006283"
FT /product="mml-miR-342-3p"
FT /evidence=not_experimental
FT /similarity="MI0000805"
XX
SQ Sequence 99 BP; 25 A; 21 C; 28 G; 0 T; 25 other;
gaaacugggc ucaaggugag gggugcuauc ugugauugag ggacaugguu aauggaauug 60
ucucacacag aaaucgcacc cgucaccuug gccuacuua 99
//
ID mml-mir-361 standard; RNA; MML; 72 BP.
XX
AC MI0007707;
XX
DE Macaca mulatta miR-361 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315242; MIR361.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0006286"
FT /product="mml-miR-361-5p"
FT /evidence=not_experimental
FT /similarity="MI0000760"
FT miRNA 45..67
FT /accession="MIMAT0006287"
FT /product="mml-miR-361-3p"
FT /evidence=not_experimental
FT /similarity="MI0000760"
XX
SQ Sequence 72 BP; 18 A; 15 C; 15 G; 0 T; 24 other;
ggagcuuauc agaaucucca gggguacuuu auaauuucaa aaaguccccc aggugugauu 60
cugauuugcu uc 72
//
ID mml-mir-362 standard; RNA; MML; 65 BP.
XX
AC MI0007708;
XX
DE Macaca mulatta miR-362 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315243; MIR362.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..28
FT /accession="MIMAT0006288"
FT /product="mml-miR-362-5p"
FT /evidence=not_experimental
FT /similarity="MI0000762"
FT miRNA 42..63
FT /accession="MIMAT0006289"
FT /product="mml-miR-362-3p"
FT /evidence=not_experimental
FT /similarity="MI0000762"
XX
SQ Sequence 65 BP; 19 A; 15 C; 13 G; 0 T; 18 other;
cucgaauccu uggaaccuag gugugagugc uauuucagug caacacaccu auucaaggau 60
ucaaa 65
//
ID mml-mir-363 standard; RNA; MML; 75 BP.
XX
AC MI0007709;
XX
DE Macaca mulatta miR-363 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315527; MIR363.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0026855"
FT /product="mml-miR-363-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 50..71
FT /accession="MIMAT0006290"
FT /product="mml-miR-363-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000764"
XX
SQ Sequence 75 BP; 22 A; 12 C; 18 G; 0 T; 23 other;
uguugucggg uggaucacga ugcaauuuug auuaguauca uaggagaaaa auugcacggu 60
auccaucugu aaacc 75
//
ID mml-mir-365-1 standard; RNA; MML; 87 BP.
XX
AC MI0007710;
XX
DE Macaca mulatta miR-365-1 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315244; MIR365-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0026856"
FT /product="mml-miR-365-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 56..77
FT /accession="MIMAT0006291"
FT /product="mml-miR-365-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000767"
XX
SQ Sequence 87 BP; 23 A; 20 C; 19 G; 0 T; 25 other;
accgcaggga aaaugaggga cuuuuggggg cagauguguu uccauuccac uaucauaaug 60
ccccuaaaaa uccuuauugc ucuugca 87
//
ID mml-mir-365-2 standard; RNA; MML; 111 BP.
XX
AC MI0007711;
XX
DE Macaca mulatta miR-365-2 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315582; MIR365-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..50
FT /accession="MIMAT0031081"
FT /product="mml-miR-365-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 68..89
FT /accession="MIMAT0006291"
FT /product="mml-miR-365-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000769"
XX
SQ Sequence 111 BP; 31 A; 21 C; 28 G; 0 T; 31 other;
agaguguuca aggacagcaa gaaaaaugag ggacuuucag gggcagcugu guuuucugac 60
ucagucauaa ugccccuaaa aauccuuauu guucuugcag ugugcaucag g 111
//
ID mml-mir-369 standard; RNA; MML; 70 BP.
XX
AC MI0007713;
XX
DE Macaca mulatta miR-369 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315454; MIR369.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0006293"
FT /product="mml-miR-369-5p"
FT /evidence=not_experimental
FT /similarity="MI0000777"
FT miRNA 44..64
FT /accession="MIMAT0006294"
FT /product="mml-miR-369-3p"
FT /evidence=not_experimental
FT /similarity="MI0000777"
XX
SQ Sequence 70 BP; 17 A; 11 C; 15 G; 0 T; 27 other;
uugaagggag aucgaccgug uuauauucgc uuuauugacu ucgaauaaua caugguugau 60
cuuuucucag 70
//
ID mml-mir-370 standard; RNA; MML; 75 BP.
XX
AC MI0007714;
XX
DE Macaca mulatta miR-370 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315246; MIR370.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0026857"
FT /product="mml-miR-370-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 48..69
FT /accession="MIMAT0006295"
FT /product="mml-miR-370-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000778"
XX
SQ Sequence 75 BP; 16 A; 19 C; 23 G; 0 T; 17 other;
agacagagaa gccaggucac gucucugcag uuacacagcu caugagugcc ugcuggggug 60
gaaccugguc ugucu 75
//
ID mml-mir-374a standard; RNA; MML; 72 BP.
XX
AC MI0007718;
XX
DE Macaca mulatta miR-374a stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315248; MIR374A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0006300"
FT /product="mml-miR-374a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000782"
FT miRNA 42..63
FT /accession="MIMAT0026859"
FT /product="mml-miR-374a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 72 BP; 22 A; 12 C; 12 G; 0 T; 26 other;
uacaucggcc auuauaauac aaccugauaa guguuacagc acuuaucaga uuguauugua 60
auugucugug ua 72
//
ID mml-mir-374b standard; RNA; MML; 72 BP.
XX
AC MI0007719;
XX
DE Macaca mulatta miR-374b stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315249; MIR374B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0006301"
FT /product="mml-miR-374b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0005566"
FT miRNA 42..62
FT /accession="MIMAT0026860"
FT /product="mml-miR-374b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 72 BP; 18 A; 15 C; 15 G; 0 T; 24 other;
acucggaugg auauaauaca accugcuaag uguccuagca cuuagcaggu uguauuauca 60
uuguccgugu cu 72
//
ID mml-mir-376a-1 standard; RNA; MML; 68 BP.
XX
AC MI0007721;
XX
DE Macaca mulatta miR-376a-1 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315455; MIR376A-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0026861"
FT /product="mml-miR-376a-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 44..64
FT /accession="MIMAT0006303"
FT /product="mml-miR-376a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000784"
XX
SQ Sequence 68 BP; 23 A; 10 C; 10 G; 0 T; 25 other;
uaaaagguag auucuccuuc uaugaguaca uuauuuauga uuaaucauag aggaaaaucc 60
acguuuuc 68
//
ID mml-mir-376a-2 standard; RNA; MML; 80 BP.
XX
AC MI0007722;
XX
DE Macaca mulatta miR-376a-2 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315250; MIR376A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031082"
FT /product="mml-miR-376a-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 50..70
FT /accession="MIMAT0006303"
FT /product="mml-miR-376a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003529"
XX
SQ Sequence 80 BP; 22 A; 10 C; 17 G; 0 T; 31 other;
gguauuuaaa agguagauuu uccuucuaug guuacguguu ugaugguuaa ucauagagga 60
aaauccacgu uuucaguauc 80
//
ID mml-mir-376b standard; RNA; MML; 100 BP.
XX
AC MI0007723;
XX
DE Macaca mulatta miR-376b stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315483; MIR376B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0026862"
FT /product="mml-miR-376b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 62..83
FT /accession="MIMAT0006304"
FT /product="mml-miR-376b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0002466"
XX
SQ Sequence 100 BP; 26 A; 17 C; 18 G; 0 T; 39 other;
caguccuucu uugguauuua aaacguggau auuccuucua uguuuacgug auuccugguu 60
aaucauagag gaaaauccau guuuucagua ucaaaugcug 100
//
ID mml-mir-376c standard; RNA; MML; 66 BP.
XX
AC MI0007724;
XX
DE Macaca mulatta miR-376c stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315251; MIR376C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0026863"
FT /product="mml-miR-376c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 43..63
FT /accession="MIMAT0006305"
FT /product="mml-miR-376c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000776"
XX
SQ Sequence 66 BP; 20 A; 7 C; 12 G; 0 T; 27 other;
aaaaggugga uauuccuucu auguuuaugu uauuuauggu uaaacauaga ggaaauucca 60
cguuuu 66
//
ID mml-mir-377 standard; RNA; MML; 69 BP.
XX
AC MI0007725;
XX
DE Macaca mulatta miR-377 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315530; MIR377.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0026864"
FT /product="mml-miR-377-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 45..66
FT /accession="MIMAT0006306"
FT /product="mml-miR-377-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000785"
XX
SQ Sequence 69 BP; 16 A; 11 C; 16 G; 0 T; 26 other;
uugagcagag guugcccuug gugaauucgc uuuauuuaug uugaaucaca caaaggcaac 60
uuuuguuug 69
//
ID mml-mir-378a standard; RNA; MML; 66 BP.
XX
AC MI0007726;
XX
DE Macaca mulatta miR-378a stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315252; MIR378.
XX
FH Key Location/Qualifiers
FH
FT miRNA 43..63
FT /accession="MIMAT0006307"
FT /product="mml-miR-378a"
FT /evidence=not_experimental
FT /similarity="MI0000786"
XX
SQ Sequence 66 BP; 14 A; 17 C; 19 G; 0 T; 16 other;
agggcuccug acuccagguc cuguguguua ccucgaaaua gcacuggacu uggagucaga 60
aggccu 66
//
ID mml-mir-379 standard; RNA; MML; 67 BP.
XX
AC MI0007727;
XX
DE Macaca mulatta miR-379 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315253; MIR379.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0006308"
FT /product="mml-miR-379-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000787"
FT miRNA 44..64
FT /accession="MIMAT0026865"
FT /product="mml-miR-379-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 67 BP; 19 A; 11 C; 16 G; 0 T; 21 other;
agagauggua gacuauggaa cguaggcguu augauuuuug accuauguaa caugguccac 60
uaacucu 67
//
ID mml-mir-380 standard; RNA; MML; 61 BP.
XX
AC MI0007728;
XX
DE Macaca mulatta miR-380 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315254; MIR380.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0026866"
FT /product="mml-miR-380-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 40..61
FT /accession="MIMAT0006309"
FT /product="mml-miR-380-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000788"
XX
SQ Sequence 61 BP; 15 A; 12 C; 14 G; 0 T; 20 other;
aagaugguug accauagaac augcgcuauc ucugugucgu auguaauaug guccacgucu 60
u 61
//
ID mml-mir-381 standard; RNA; MML; 75 BP.
XX
AC MI0007729;
XX
DE Macaca mulatta miR-381 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315406; MIR381.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0026867"
FT /product="mml-miR-381-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 49..70
FT /accession="MIMAT0006310"
FT /product="mml-miR-381-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000789"
XX
SQ Sequence 75 BP; 20 A; 12 C; 18 G; 0 T; 25 other;
uacuuaaagc gagguugccc uuuguauauu cgguuuauug acauggaaua uacaagggca 60
agcucucugu gagua 75
//
ID mml-mir-382 standard; RNA; MML; 76 BP.
XX
AC MI0007730;
XX
DE Macaca mulatta miR-382 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315531; MIR382.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0006311"
FT /product="mml-miR-382-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000790"
FT miRNA 47..69
FT /accession="MIMAT0026868"
FT /product="mml-miR-382-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 76 BP; 20 A; 13 C; 16 G; 0 T; 27 other;
uacuugaaga gaaguuguuc gugguggauu cgcuuuacuu augacgaauc auucacggac 60
aacacuuuuu ucagua 76
//
ID mml-mir-383 standard; RNA; MML; 73 BP.
XX
AC MI0007731;
XX
DE Macaca mulatta miR-383 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315456; MIR383.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0006312"
FT /product="mml-miR-383"
FT /evidence=not_experimental
FT /similarity="MI0000791"
XX
SQ Sequence 73 BP; 19 A; 15 C; 21 G; 0 T; 18 other;
cuccucagau cagaagguga uuguggcuuu ggguggauau uaaucagcca cagcacugcc 60
uggucagaaa gag 73
//
ID mml-mir-409 standard; RNA; MML; 79 BP.
XX
AC MI0007733;
XX
DE Macaca mulatta miR-409 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315256; MIR409.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0006314"
FT /product="mml-miR-409-5p"
FT /evidence=not_experimental
FT /similarity="MI0001735"
FT miRNA 47..68
FT /accession="MIMAT0006315"
FT /product="mml-miR-409-3p"
FT /evidence=not_experimental
FT /similarity="MI0001735"
XX
SQ Sequence 79 BP; 16 A; 19 C; 23 G; 0 T; 21 other;
ugguacucgg ggagagguua cccgagcaac uuugcaucug gacgacgaau guugcucggu 60
gaaccccuuu ucgguauca 79
//
ID mml-mir-410 standard; RNA; MML; 80 BP.
XX
AC MI0007734;
XX
DE Macaca mulatta miR-410 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315257; MIR410.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0026869"
FT /product="mml-miR-410-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 50..70
FT /accession="MIMAT0006316"
FT /product="mml-miR-410-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0002465"
XX
SQ Sequence 80 BP; 20 A; 13 C; 21 G; 0 T; 26 other;
gguaccugag gagagguugu cugugaugag uucgcuuuua uuaaugacga auauaacaca 60
gauggccugu uuucaguacc 80
//
ID mml-mir-421 standard; RNA; MML; 79 BP.
XX
AC MI0007737;
XX
DE Macaca mulatta miR-421 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315258; MIR421.
XX
FH Key Location/Qualifiers
FH
FT miRNA 47..69
FT /accession="MIMAT0006319"
FT /product="mml-miR-421"
FT /evidence=not_experimental
FT /similarity="MI0003685"
XX
SQ Sequence 79 BP; 25 A; 14 C; 16 G; 0 T; 24 other;
cacauuguag gccucauuaa auguuuguug aaugaaaaaa ugaaucauca acagacauua 60
auugggcgcc ugcucugug 79
//
ID mml-mir-423 standard; RNA; MML; 94 BP.
XX
AC MI0007739;
XX
DE Macaca mulatta miR-423 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315260; MIR423.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0006321"
FT /product="mml-miR-423-5p"
FT /evidence=not_experimental
FT /similarity="MI0001445"
FT miRNA 53..75
FT /accession="MIMAT0006322"
FT /product="mml-miR-423-3p"
FT /evidence=not_experimental
FT /similarity="MI0001445"
XX
SQ Sequence 94 BP; 21 A; 25 C; 25 G; 0 T; 23 other;
auaaaggaag uuaggcugag gggcagagag cgagacuuuu cuauuuucca aaagcucggu 60
cugaggcccc ucagucuugc uuccuacccc gcgc 94
//
ID mml-mir-424 standard; RNA; MML; 98 BP.
XX
AC MI0007740;
XX
DE Macaca mulatta miR-424 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315600; MIR424.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0006323"
FT /product="mml-miR-424-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001446"
FT miRNA 49..69
FT /accession="MIMAT0026872"
FT /product="mml-miR-424-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 98 BP; 25 A; 17 C; 33 G; 0 T; 23 other;
cgaggggaua cagcagcaau ucauguuuug aaguguucua aaugguucaa aacgugaggc 60
gcugcuauac ccccucgugg ggaagguaga aggugggg 98
//
ID mml-mir-433 standard; RNA; MML; 93 BP.
XX
AC MI0007745;
XX
DE Macaca mulatta miR-433 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315534; MIR433.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0026875"
FT /product="mml-miR-433-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 64..85
FT /accession="MIMAT0006328"
FT /product="mml-miR-433-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001723"
XX
SQ Sequence 93 BP; 20 A; 19 C; 30 G; 0 T; 24 other;
ccagggagaa guacggugag ccugucauua uucagagagg cuagauccuc uguguugaga 60
aggaucauga ugggcuccuc gguguucucc agg 93
//
ID mml-mir-448 standard; RNA; MML; 111 BP.
XX
AC MI0007746;
XX
DE Macaca mulatta miR-448 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315263; MIR448.
XX
FH Key Location/Qualifiers
FH
FT miRNA 71..92
FT /accession="MIMAT0006329"
FT /product="mml-miR-448"
FT /evidence=not_experimental
FT /similarity="MI0001637"
XX
SQ Sequence 111 BP; 24 A; 29 C; 29 G; 0 T; 29 other;
gccgggaggu ugaacauccu gcauagugcu gccaggaaau cccuauuuca uacuaagagg 60
ggcuggcugg uugcauaugu aggauguccc aucucccagc cuacuucguc a 111
//
ID mml-mir-449b standard; RNA; MML; 97 BP.
XX
AC MI0007748;
XX
DE Macaca mulatta miR-449b stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315457; MIR449B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0006331"
FT /product="mml-miR-449b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003673"
FT miRNA 55..76
FT /accession="MIMAT0026877"
FT /product="mml-miR-449b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 97 BP; 22 A; 24 C; 22 G; 0 T; 29 other;
ugaccugaau cagguaggca guguauuguu agcuggcugc uugagucaag ucagcagcca 60
caacuacccu gccacuugcu ucuggauaaa uucuucu 97
//
ID mml-mir-452 standard; RNA; MML; 85 BP.
XX
AC MI0007753;
XX
DE Macaca mulatta miR-452 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315409; MIR452.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0006336"
FT /product="mml-miR-452-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001733"
FT miRNA 55..76
FT /accession="MIMAT0026879"
FT /product="mml-miR-452-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 85 BP; 25 A; 17 C; 18 G; 0 T; 25 other;
gcuaagcacu uacaacuguu ugcagaggaa acugagacuu uguaacuaug ucucagucuc 60
aucugcaaag aaguaagugc uuugc 85
//
ID mml-mir-454 standard; RNA; MML; 115 BP.
XX
AC MI0007755;
XX
DE Macaca mulatta miR-454 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315268; MIR454.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..45
FT /accession="MIMAT0026880"
FT /product="mml-miR-454-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 64..86
FT /accession="MIMAT0006338"
FT /product="mml-miR-454-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003820"
XX
SQ Sequence 115 BP; 29 A; 18 C; 28 G; 0 T; 40 other;
ucuguuuauc accagauccu agaacccuau caauauuguc ucugcugugu aaauaguucu 60
gaguagugca auauugcuua uaggguuuug guguuuggga agaacaaugg gcagg 115
//
ID mml-mir-455 standard; RNA; MML; 96 BP.
XX
AC MI0007756;
XX
DE Macaca mulatta miR-455 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315458; MIR455.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0006339"
FT /product="mml-miR-455-5p"
FT /evidence=not_experimental
FT /similarity="MI0003513"
FT miRNA 54..74
FT /accession="MIMAT0006340"
FT /product="mml-miR-455-3p"
FT /evidence=not_experimental
FT /similarity="MI0003513"
XX
SQ Sequence 96 BP; 20 A; 27 C; 25 G; 0 T; 24 other;
ucccuggcgu gaggguaugu gccuuuggac uacaucgugg aagccagcac caugcagucc 60
augggcauau acacuugccu caaggccuau gucauc 96
//
ID mml-mir-485 standard; RNA; MML; 73 BP.
XX
AC MI0007758;
XX
DE Macaca mulatta miR-485 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315269; MIR485.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0006342"
FT /product="mml-miR-485-5p"
FT /evidence=not_experimental
FT /similarity="MI0002469"
FT miRNA 46..67
FT /accession="MIMAT0006343"
FT /product="mml-miR-485-3p"
FT /evidence=not_experimental
FT /similarity="MI0002469"
XX
SQ Sequence 73 BP; 17 A; 17 C; 18 G; 0 T; 21 other;
acuuggagag aggcuggccg ugaugaauuc gauucaucaa agcgagucau acacggcucu 60
ccucucuuuu agu 73
//
ID mml-mir-486 standard; RNA; MML; 68 BP.
XX
AC MI0007759;
XX
DE Macaca mulatta miR-486 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315584; MIR486.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0006344"
FT /product="mml-miR-486-5p"
FT /evidence=not_experimental
FT /similarity="MI0002470"
FT miRNA 46..66
FT /accession="MIMAT0006345"
FT /product="mml-miR-486-3p"
FT /evidence=not_experimental
FT /similarity="MI0002470"
XX
SQ Sequence 68 BP; 13 A; 19 C; 24 G; 0 T; 12 other;
guauccugua cugagcugcc ccgagcuggg cagcaugaag ggccucgggg cagcucagua 60
caggaugc 68
//
ID mml-mir-488 standard; RNA; MML; 83 BP.
XX
AC MI0007762;
XX
DE Macaca mulatta miR-488 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315271; MIR488.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0026882"
FT /product="mml-miR-488-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 52..72
FT /accession="MIMAT0006348"
FT /product="mml-miR-488-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003123"
XX
SQ Sequence 83 BP; 23 A; 19 C; 15 G; 0 T; 26 other;
gagaaucauc ucucccagau aauggcacuc ucaaacaagu uuccaaguug uuugaaaggc 60
uauuucuugg ucagaugacu cuc 83
//
ID mml-mir-490 standard; RNA; MML; 128 BP.
XX
AC MI0007764;
XX
DE Macaca mulatta miR-490 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315273; MIR490.
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..58
FT /accession="MIMAT0006350"
FT /product="mml-miR-490-5p"
FT /evidence=not_experimental
FT /similarity="MI0003125"
FT miRNA 76..97
FT /accession="MIMAT0006351"
FT /product="mml-miR-490-3p"
FT /evidence=not_experimental
FT /similarity="MI0003125"
XX
SQ Sequence 128 BP; 29 A; 30 C; 36 G; 0 T; 33 other;
uggaggccuu gcugguuugg aaaguucauu guucgacacc auggaucucc agguggguca 60
aguuuagaga ugcaccaacc uggaggacuc caugcuguug agcuguucac aagcagcgga 120
cacuucca 128
//
ID mml-mir-491 standard; RNA; MML; 84 BP.
XX
AC MI0007765;
XX
DE Macaca mulatta miR-491 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315410; MIR491.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0006352"
FT /product="mml-miR-491-5p"
FT /evidence=not_experimental
FT /similarity="MI0003126"
FT miRNA 50..71
FT /accession="MIMAT0006353"
FT /product="mml-miR-491-3p"
FT /evidence=not_experimental
FT /similarity="MI0003126"
XX
SQ Sequence 84 BP; 17 A; 19 C; 24 G; 0 T; 24 other;
uugacuuagc uggguagugg ggaacccuuc caugaggagu agaacacucc uuaugcaaga 60
uucccuucua ccuggcuggg uugg 84
//
ID mml-mir-493 standard; RNA; MML; 89 BP.
XX
AC MI0007767;
XX
DE Macaca mulatta miR-493 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315274; MIR493.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0026884"
FT /product="mml-miR-493-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 57..78
FT /accession="MIMAT0006355"
FT /product="mml-miR-493-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003132"
XX
SQ Sequence 89 BP; 13 A; 23 C; 25 G; 0 T; 28 other;
cuggccucca gggcuuugua caugguaggc uuucauucau ucguuugcac auucggugaa 60
ggucuacugu gugccaggcc cugugccag 89
//
ID mml-mir-495 standard; RNA; MML; 82 BP.
XX
AC MI0007769;
XX
DE Macaca mulatta miR-495 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315275; MIR495.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0026886"
FT /product="mml-miR-495-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 50..71
FT /accession="MIMAT0006357"
FT /product="mml-miR-495-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003135"
XX
SQ Sequence 82 BP; 22 A; 15 C; 16 G; 0 T; 29 other;
ugguaccuga aaagaaguug cccauguuau uuucgcuuua uaugugacga aacaaacaug 60
gugcacuucu uuuucgguau ca 82
//
ID mml-mir-499 standard; RNA; MML; 121 BP.
XX
AC MI0007773;
XX
DE Macaca mulatta miR-499 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315539; MIR499.
XX
FH Key Location/Qualifiers
FH
FT miRNA 32..52
FT /accession="MIMAT0006361"
FT /product="mml-miR-499-5p"
FT /evidence=not_experimental
FT /similarity="MI0003183"
FT miRNA 69..90
FT /accession="MIMAT0006362"
FT /product="mml-miR-499-3p"
FT /evidence=not_experimental
FT /similarity="MI0003183"
XX
SQ Sequence 121 BP; 18 A; 38 C; 33 G; 0 T; 32 other;
gcccuguccc cgugucuugg gcgggcagcu guuaagacuu gcagugaugu uuaacuccuc 60
uccacgugaa caucacagca agucugugcu gcuucccguc ccuacgcugc cugggcaggg 120
u 121
//
ID mml-mir-500a standard; RNA; MML; 84 BP.
XX
AC MI0007774;
XX
DE Macaca mulatta miR-500a stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315278; MIR500.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0006363"
FT /product="mml-miR-500a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003184"
FT miRNA 52..74
FT /accession="MIMAT0026888"
FT /product="mml-miR-500a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 84 BP; 18 A; 23 C; 23 G; 0 T; 20 other;
gcucccccuc ucuaauccuu gcuaccuggg ugagagugcu aucugaaugc aaugcaccug 60
ggcaaggauu cugagagcga gagc 84
//
ID mml-mir-502 standard; RNA; MML; 80 BP.
XX
AC MI0007776;
XX
DE Macaca mulatta miR-502 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315279; MIR502.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0006365"
FT /product="mml-miR-502-5p"
FT /evidence=not_experimental
FT /similarity="MI0003186"
FT miRNA 46..67
FT /accession="MIMAT0006366"
FT /product="mml-miR-502-3p"
FT /evidence=not_experimental
FT /similarity="MI0003186"
XX
SQ Sequence 80 BP; 16 A; 20 C; 23 G; 0 T; 21 other;
cccucucuaa uccuugcuau cugggugcua gugcugucuc aaugcaaugc accugggcaa 60
ggauucagag agggggagcu 80
//
ID mml-mir-503 standard; RNA; MML; 71 BP.
XX
AC MI0007777;
XX
DE Macaca mulatta miR-503 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315412; MIR503.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0006367"
FT /product="mml-miR-503-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003188"
FT miRNA 46..68
FT /accession="MIMAT0026890"
FT /product="mml-miR-503-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 71 BP; 14 A; 16 C; 22 G; 0 T; 19 other;
ugcccuagca gcgggaacag uucugcagug agugaucagu acucuggagu auuguuuccg 60
cugccagggu a 71
//
ID mml-mir-505 standard; RNA; MML; 84 BP.
XX
AC MI0007779;
XX
DE Macaca mulatta miR-505 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315540; MIR505.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0026892"
FT /product="mml-miR-505-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 51..72
FT /accession="MIMAT0006369"
FT /product="mml-miR-505-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003190"
XX
SQ Sequence 84 BP; 16 A; 20 C; 24 G; 0 T; 24 other;
gaugcaccca gugggggagc caggaaguau ugauguuucu gccaguuuag cgucaacacu 60
ugcugguuuc cucucuggag cauc 84
//
ID mml-mir-511 standard; RNA; MML; 87 BP.
XX
AC MI0007780;
XX
DE Macaca mulatta miR-511 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315281; MIR511.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..36
FT /accession="MIMAT0006370"
FT /product="mml-miR-511-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003127"
FT miRNA 54..75
FT /accession="MIMAT0026893"
FT /product="mml-miR-511-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 87 BP; 24 A; 16 C; 19 G; 0 T; 28 other;
caauagacac ccaccuuguc uuuugcucug cagucaguaa auauuuuuuu gugaaugugu 60
agcaaaagac agaauggggg uccauug 87
//
ID mml-mir-512 standard; RNA; MML; 84 BP.
XX
AC MI0007782;
XX
DE Macaca mulatta miR-512 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315541; MIR512.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0006371"
FT /product="mml-miR-512-5p"
FT /evidence=not_experimental
FT /similarity="MI0003141"
FT miRNA 51..72
FT /accession="MIMAT0006372"
FT /product="mml-miR-512-3p"
FT /evidence=not_experimental
FT /similarity="MI0003141"
XX
SQ Sequence 84 BP; 17 A; 20 C; 24 G; 0 T; 23 other;
ucucacucug uggcacucag ccucgggggc acuuucuggu gucagaauga aagugcuguc 60
auugcugaga uccaaugacu gagg 84
//
ID mml-mir-517a standard; RNA; MML; 86 BP.
XX
AC MI0007787;
XX
DE Macaca mulatta miR-517a stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315285; MIR517.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0006375"
FT /product="mml-miR-517a"
FT /evidence=not_experimental
FT /similarity="MI0003161"
XX
SQ Sequence 86 BP; 23 A; 17 C; 21 G; 0 T; 25 other;
cucaugcagu gacccucuag auggaagcac ugucuguggu cuaaaagaaa agaucgugca 60
uccuuuuaga guguuaccgu uugaga 86
//
ID mml-mir-518c standard; RNA; MML; 101 BP.
XX
AC MI0007791;
XX
DE Macaca mulatta miR-518c stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315461; MIR518C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..48
FT /accession="MIMAT0026894"
FT /product="mml-miR-518c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 62..84
FT /accession="MIMAT0006380"
FT /product="mml-miR-518c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003159"
XX
SQ Sequence 101 BP; 29 A; 17 C; 27 G; 0 T; 28 other;
gcgagaagau uucaugcugu gacucucuag agggaagcgc uuucuguugu cugaaagaaa 60
acaaagcgcu ucucuuuaga gaguuacggu uugagaaaag c 101
//
ID mml-mir-519a standard; RNA; MML; 85 BP.
XX
AC MI0007795;
XX
DE Macaca mulatta miR-519a stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315414; MIR519A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0026895"
FT /product="mml-miR-519a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 53..77
FT /accession="MIMAT0006384"
FT /product="mml-miR-519a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003146"
XX
SQ Sequence 85 BP; 20 A; 16 C; 25 G; 0 T; 24 other;
cucaggcugu gacccucuag agggaagcgc uuucuguggu cugaaagaaa agaaagugcu 60
uccuuuuaga ggguuaccgu uugag 85
//
ID mml-mir-520a standard; RNA; MML; 85 BP.
XX
AC MI0007799;
XX
DE Macaca mulatta miR-520a stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315292; MIR520A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..35
FT /accession="MIMAT0026896"
FT /product="mml-miR-520a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 53..74
FT /accession="MIMAT0006388"
FT /product="mml-miR-520a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003149"
XX
SQ Sequence 85 BP; 18 A; 16 C; 24 G; 0 T; 27 other;
cucaggcugu gacccuccag agggaaguau uuucuguugu cugaaggaaa agaaagugcu 60
ucccuuugga cuguuucggu uugag 85
//
ID mml-mir-532 standard; RNA; MML; 78 BP.
XX
AC MI0007814;
XX
DE Macaca mulatta miR-532 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315299; MIR532.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0006403"
FT /product="mml-miR-532-5p"
FT /evidence=not_experimental
FT /similarity="MI0003205"
FT miRNA 57..78
FT /accession="MIMAT0006404"
FT /product="mml-miR-532-3p"
FT /evidence=not_experimental
FT /similarity="MI0003205"
XX
SQ Sequence 78 BP; 14 A; 27 C; 14 G; 0 T; 23 other;
cgacuugcuu ucucuccucc augccuugag uguaggaccg uuggcaucuu aauuacccuc 60
ccacacccaa ggcuugca 78
//
ID mml-mir-542 standard; RNA; MML; 97 BP.
XX
AC MI0007816;
XX
DE Macaca mulatta miR-542 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315547; MIR542.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0006406"
FT /product="mml-miR-542-5p"
FT /evidence=not_experimental
FT /similarity="MI0003686"
FT miRNA 53..74
FT /accession="MIMAT0006407"
FT /product="mml-miR-542-3p"
FT /evidence=not_experimental
FT /similarity="MI0003686"
XX
SQ Sequence 97 BP; 27 A; 24 C; 22 G; 0 T; 24 other;
cagaccucag acaucucggg gaucaucaug ucacgagaua ccacugugca cuugugacag 60
auugauaacu gaaaggucug ggagccauuc aucuuca 97
//
ID mml-mir-544 standard; RNA; MML; 91 BP.
XX
AC MI0007817;
XX
DE Macaca mulatta miR-544 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315301; MIR544.
XX
FH Key Location/Qualifiers
FH
FT miRNA 55..76
FT /accession="MIMAT0006408"
FT /product="mml-miR-544"
FT /evidence=not_experimental
FT /similarity="MI0003515"
XX
SQ Sequence 91 BP; 27 A; 16 C; 17 G; 0 T; 31 other;
auuuucauca ccuagggauc uuguuaaaaa gcagauucug auucagggac caagauucug 60
cauuuuuagc aaguucucaa gugaugcuaa u 91
//
ID mml-mir-582 standard; RNA; MML; 98 BP.
XX
AC MI0007849;
XX
DE Macaca mulatta miR-582 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315421; MIR582.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0006443"
FT /product="mml-miR-582-5p"
FT /evidence=not_experimental
FT /similarity="MI0003589"
FT miRNA 53..74
FT /accession="MIMAT0006444"
FT /product="mml-miR-582-3p"
FT /evidence=not_experimental
FT /similarity="MI0003589"
XX
SQ Sequence 98 BP; 32 A; 19 C; 17 G; 0 T; 30 other;
aucugugcuc uuugauuaca guuguucaac caguuacuaa ucuaccuaau uguaacuggu 60
ugaacaacug aacccaaagg gugcaaagua gaaacauu 98
//
ID mml-mir-584 standard; RNA; MML; 97 BP.
XX
AC MI0007851;
XX
DE Macaca mulatta miR-584 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315319; MIR584.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0006446"
FT /product="mml-miR-584-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003591"
FT miRNA 57..77
FT /accession="MIMAT0026900"
FT /product="mml-miR-584-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 97 BP; 20 A; 21 C; 30 G; 0 T; 26 other;
uagggugacc agccauuaug guuugccugg gacugaggaa uuugcuggga uaugucaguu 60
ccaggccaac caggcugguu gguuucccug aagcaac 97
//
ID mml-mir-590 standard; RNA; MML; 97 BP.
XX
AC MI0007855;
XX
DE Macaca mulatta miR-590 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315588; MIR590.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0006450"
FT /product="mml-miR-590-5p"
FT /evidence=not_experimental
FT /similarity="MI0003602"
FT miRNA 56..76
FT /accession="MIMAT0006451"
FT /product="mml-miR-590-3p"
FT /evidence=not_experimental
FT /similarity="MI0003602"
XX
SQ Sequence 97 BP; 30 A; 15 C; 23 G; 0 T; 29 other;
uagccaguca gaaaugagcu uauucauaaa agugcaguau gguggaguca gucuguaauu 60
uuauguauaa gcuggucucu aacugaaacg ugcagca 97
//
ID mml-mir-598 standard; RNA; MML; 97 BP.
XX
AC MI0007859;
XX
DE Macaca mulatta miR-598 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315324; MIR598.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0026902"
FT /product="mml-miR-598-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 61..82
FT /accession="MIMAT0006455"
FT /product="mml-miR-598-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003610"
XX
SQ Sequence 97 BP; 17 A; 21 C; 31 G; 0 T; 28 other;
gcuugaugau gcugcugaug cuggcgguga ucccgauggu gugagcugga aauggggugc 60
uacgucaucg uugucaucgu caucaucauc auccgag 97
//
ID mml-mir-599 standard; RNA; MML; 95 BP.
XX
AC MI0007860;
XX
DE Macaca mulatta miR-599 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315555; MIR599.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0026903"
FT /product="mml-miR-599-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 61..80
FT /accession="MIMAT0006456"
FT /product="mml-miR-599-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003611"
XX
SQ Sequence 95 BP; 25 A; 18 C; 22 G; 0 T; 30 other;
aaagacaugc uguccacagu guguuugaua agcugacaug ggacagggau ucuuuucacu 60
guugugucag uuuaucaaac ccauacuugg augac 95
//
ID mml-mir-615 standard; RNA; MML; 96 BP.
XX
AC MI0007869;
XX
DE Macaca mulatta miR-615 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315329; MIR615.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0006465"
FT /product="mml-miR-615-5p"
FT /evidence=not_experimental
FT /similarity="MI0003628"
FT miRNA 61..82
FT /accession="MIMAT0006466"
FT /product="mml-miR-615-3p"
FT /evidence=not_experimental
FT /similarity="MI0003628"
XX
SQ Sequence 96 BP; 9 A; 34 C; 33 G; 0 T; 20 other;
cucgggaggg gcggaagggg gguccccggu gcucggaucu cgagggugcu uauuguucgg 60
uccgagccug ggucucccuc uuccccccaa cccccc 96
//
ID mml-mir-628 standard; RNA; MML; 95 BP.
XX
AC MI0007877;
XX
DE Macaca mulatta miR-628 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315558; MIR628.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0006474"
FT /product="mml-miR-628-5p"
FT /evidence=not_experimental
FT /similarity="MI0003642"
FT miRNA 61..81
FT /accession="MIMAT0006475"
FT /product="mml-miR-628-3p"
FT /evidence=not_experimental
FT /similarity="MI0003642"
XX
SQ Sequence 95 BP; 29 A; 16 C; 22 G; 0 T; 28 other;
auagcuguug ugucacuucc ucaugcugac auauuuacua gaggguaaaa uuaauaaccu 60
ucuaguaaga guggcagucg aagggaagga cucau 95
//
ID mml-mir-653 standard; RNA; MML; 96 BP.
XX
AC MI0007897;
XX
DE Macaca mulatta miR-653 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315427; MIR653.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0006494"
FT /product="mml-miR-653-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003674"
FT miRNA 51..72
FT /accession="MIMAT0026905"
FT /product="mml-miR-653-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 96 BP; 32 A; 18 C; 16 G; 0 T; 30 other;
uucauuccuu caguguugaa acaaucucua cugaaccagc uucaaacaaa uucacuggag 60
uuuguuucaa uauugcaaga augauaagau ggaagc 96
//
ID mml-mir-654 standard; RNA; MML; 81 BP.
XX
AC MI0007898;
XX
DE Macaca mulatta miR-654 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315345; MIR654.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0006495"
FT /product="mml-miR-654-5p"
FT /evidence=not_experimental
FT /similarity="MI0003676"
FT miRNA 51..72
FT /accession="MIMAT0006496"
FT /product="mml-miR-654-3p"
FT /evidence=not_experimental
FT /similarity="MI0003676"
XX
SQ Sequence 81 BP; 19 A; 18 C; 25 G; 0 T; 19 other;
ggguaagugg aaagauggug ggccgcagaa caugugcuga guucgugcca uaugucugcu 60
gaccaucacc uuuagaagcc c 81
//
ID mml-mir-656 standard; RNA; MML; 78 BP.
XX
AC MI0007899;
XX
DE Macaca mulatta miR-656 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315562; MIR656.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..28
FT /accession="MIMAT0026906"
FT /product="mml-miR-656-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 43..63
FT /accession="MIMAT0006497"
FT /product="mml-miR-656-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003678"
XX
SQ Sequence 78 BP; 21 A; 14 C; 14 G; 0 T; 29 other;
cugaaauagg uugucuguga gguguucacu uucuauauga ugaauauuau acagucaacc 60
ucuuuccgau aucgaauc 78
//
ID mml-mir-671 standard; RNA; MML; 118 BP.
XX
AC MI0007907;
XX
DE Macaca mulatta miR-671 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315350; MIR671.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..51
FT /accession="MIMAT0006505"
FT /product="mml-miR-671-5p"
FT /evidence=not_experimental
FT /similarity="MI0003760"
FT miRNA 68..88
FT /accession="MIMAT0006506"
FT /product="mml-miR-671-3p"
FT /evidence=not_experimental
FT /similarity="MI0003760"
XX
SQ Sequence 118 BP; 20 A; 28 C; 47 G; 0 T; 23 other;
gcaggugaac uggcaggcca ggaagaggag gaagcccugg aggggcugga ggugauggau 60
guuuuccucc gguucucagg gcuccaccuc uuucgggccg uagagccagg gcuggugc 118
//
ID mml-mir-758 standard; RNA; MML; 88 BP.
XX
AC MI0007909;
XX
DE Macaca mulatta miR-758 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315564; MIR758.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0026909"
FT /product="mml-miR-758-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 52..73
FT /accession="MIMAT0006508"
FT /product="mml-miR-758-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0003757"
XX
SQ Sequence 88 BP; 19 A; 23 C; 22 G; 0 T; 24 other;
gccuggauac gugagauggu ugaccagaga gcacacgcuu uauaugugcc guuugugacc 60
ugguccacua ccccucagua ucuaaugc 88
//
ID mml-mir-767 standard; RNA; MML; 110 BP.
XX
AC MI0007911;
XX
DE Macaca mulatta miR-767 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315352; MIR767.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..49
FT /accession="MIMAT0006510"
FT /product="mml-miR-767-5p"
FT /evidence=not_experimental
FT /similarity="MI0003763"
FT miRNA 61..83
FT /accession="MIMAT0006511"
FT /product="mml-miR-767-3p"
FT /evidence=not_experimental
FT /similarity="MI0003763"
XX
SQ Sequence 110 BP; 19 A; 25 C; 24 G; 0 T; 42 other;
gcuuuuauau uguagguuuu ugcucaugca ccaugguugu cugagcaugc agcaugcuug 60
ucugcucaua ccccaugguu ucugagcagg aaucuucauu gucuacugcu 110
//
ID mml-mir-874 standard; RNA; MML; 78 BP.
XX
AC MI0007915;
XX
DE Macaca mulatta miR-874 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315428; MIR874.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..32
FT /accession="MIMAT0026910"
FT /product="mml-miR-874-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 47..68
FT /accession="MIMAT0006516"
FT /product="mml-miR-874-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0005532"
XX
SQ Sequence 78 BP; 12 A; 28 C; 26 G; 0 T; 12 other;
uuagcccugc ggccccacgc accaggguaa gagagagucu cgcuuccugc ccuggcccga 60
gggaccgacu ggcugggc 78
//
ID mml-mir-876 standard; RNA; MML; 81 BP.
XX
AC MI0007917;
XX
DE Macaca mulatta miR-876 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315355; MIR876.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0006519"
FT /product="mml-miR-876-5p"
FT /evidence=not_experimental
FT /similarity="MI0005542"
FT miRNA 50..71
FT /accession="MIMAT0006520"
FT /product="mml-miR-876-3p"
FT /evidence=not_experimental
FT /similarity="MI0005542"
XX
SQ Sequence 81 BP; 21 A; 11 C; 19 G; 0 T; 30 other;
ugaagugcug uggauuucuu ugugaaucac cauaucuaag cuaauguggu ggugguuuac 60
aaaguaauuc auagugcuuc a 81
//
ID mml-mir-885 standard; RNA; MML; 74 BP.
XX
AC MI0007919;
XX
DE Macaca mulatta miR-885 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
DR ENTREZGENE; 100315357; MIR885.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0006522"
FT /product="mml-miR-885-5p"
FT /evidence=not_experimental
FT /similarity="MI0005560"
FT miRNA 43..64
FT /accession="MIMAT0006523"
FT /product="mml-miR-885-3p"
FT /evidence=not_experimental
FT /similarity="MI0005560"
XX
SQ Sequence 74 BP; 14 A; 23 C; 20 G; 0 T; 17 other;
ccgcacucuc uccauuacac uacccugccu cuucuccaug agaggcagcg ggguguagug 60
gauagagcac gggu 74
//
ID mml-mir-889 standard; RNA; MML; 79 BP.
XX
AC MI0007923;
XX
DE Macaca mulatta miR-889 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315358; MIR889.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0026912"
FT /product="mml-miR-889-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 49..69
FT /accession="MIMAT0006528"
FT /product="mml-miR-889-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0005540"
XX
SQ Sequence 79 BP; 21 A; 12 C; 16 G; 0 T; 30 other;
gugcuuaaag aauggcuguc cguaguaugg ucucuauauu uaugaugauu aauaucggac 60
aaccauuguu uuaguaucc 79
//
ID mml-mir-934 standard; RNA; MML; 83 BP.
XX
AC MI0007931;
XX
DE Macaca mulatta miR-934 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315363; MIR934.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0006536"
FT /product="mml-miR-934-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0005756"
FT miRNA 51..72
FT /accession="MIMAT0026914"
FT /product="mml-miR-934-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 83 BP; 23 A; 16 C; 21 G; 0 T; 23 other;
aggaauaagg cuucugucua cuacuggaga cacugauagu guaaaaccca gagucuucgg 60
uaauggacgg gagccuuauu ucu 83
//
ID mml-mir-942 standard; RNA; MML; 86 BP.
XX
AC MI0007937;
XX
DE Macaca mulatta miR-942 stem-loop
XX
RN [1]
RX PUBMED; 18186931.
RA Yue J, Sheng Y, Orwig KE;
RT "Identification of novel homologous microRNA genes in the rhesus macaque
RT genome";
RL BMC Genomics. 9:8(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315569; MIR942.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0006542"
FT /product="mml-miR-942-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0005767"
FT miRNA 53..74
FT /accession="MIMAT0026915"
FT /product="mml-miR-942-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 86 BP; 22 A; 22 C; 18 G; 0 T; 24 other;
auuaagagag uaccuucucu guuuuggcca uguguguacu cacagccccu cacacguggc 60
cgaaacagag aagguacuuu ccuaau 86
//
ID cel-mir-1820 standard; RNA; CEL; 107 BP.
XX
AC MI0007982;
XX
DE Caenorhabditis elegans miR-1820 stem-loop
XX
RN [1]
RX PUBMED; 18042455.
RA Zhang L, Ding L, Cheung TH, Dong MQ, Chen J, Sewell AK, Liu X, Yates JR
RA 3rd, Han M;
RT "Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA
RT targets by their interactions with GW182 proteins AIN-1 and AIN-2";
RL Mol Cell. 28:598-613(2007).
XX
RN [2]
RX PUBMED; 18392026.
RA Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S,
RA Rajewsky N;
RT "Discovering microRNAs from deep sequencing data using miRDeep";
RL Nat Biotechnol. 26:407-415(2008).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [5]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
CC This sequence was erroneously named mir-805 in [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..48
FT /accession="MIMAT0006587"
FT /product="cel-miR-1820-5p"
FT /evidence=experimental
FT /experiment="454 [1-2], Illumina [3,5], CLIPseq [4]"
FT miRNA 66..87
FT /accession="MIMAT0020359"
FT /product="cel-miR-1820-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 107 BP; 36 A; 14 C; 17 G; 0 T; 40 other;
uucaaaaauu gcauuuucca ucuuuugauu guuuuucgau gauguucguu aaaucgguau 60
aagcgaacca uuguaaacaa ucaaagaaug gagaaucaau uuaugau 107
//
ID cel-mir-1822 standard; RNA; CEL; 94 BP.
XX
AC MI0007984;
XX
DE Caenorhabditis elegans miR-1822 stem-loop
XX
RN [1]
RX PUBMED; 18042455.
RA Zhang L, Ding L, Cheung TH, Dong MQ, Chen J, Sewell AK, Liu X, Yates JR
RA 3rd, Han M;
RT "Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA
RT targets by their interactions with GW182 proteins AIN-1 and AIN-2";
RL Mol Cell. 28:598-613(2007).
XX
RN [2]
RX PUBMED; 18392026.
RA Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S,
RA Rajewsky N;
RT "Discovering microRNAs from deep sequencing data using miRDeep";
RL Nat Biotechnol. 26:407-415(2008).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
CC This sequence was erroneously named mir-807 in [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..42
FT /accession="MIMAT0015266"
FT /product="cel-miR-1822-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [4]"
FT miRNA 58..79
FT /accession="MIMAT0006589"
FT /product="cel-miR-1822-3p"
FT /evidence=experimental
FT /experiment="454 [1-2], Illumina [3], CLIPseq [4]"
XX
SQ Sequence 94 BP; 29 A; 23 C; 17 G; 0 T; 25 other;
auucuugaaa acuccaauag uuucucuggg aaagcuaucg gccaaauuua acuguccgag 60
cugcccucag aaaaacucuu ggcucaucga gaaa 94
//
ID cel-mir-1823 standard; RNA; CEL; 90 BP.
XX
AC MI0007985;
XX
DE Caenorhabditis elegans miR-1823 stem-loop
XX
RN [1]
RX PUBMED; 18042455.
RA Zhang L, Ding L, Cheung TH, Dong MQ, Chen J, Sewell AK, Liu X, Yates JR
RA 3rd, Han M;
RT "Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA
RT targets by their interactions with GW182 proteins AIN-1 and AIN-2";
RL Mol Cell. 28:598-613(2007).
XX
RN [2]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
CC This sequence was erroneously named mir-808 in [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0032035"
FT /product="cel-miR-1823-5p"
FT /evidence=not_experimental
FT miRNA 53..74
FT /accession="MIMAT0006590"
FT /product="cel-miR-1823-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 90 BP; 26 A; 19 C; 19 G; 0 T; 26 other;
cuuugaccug aacgucaccc cuaacccuau gcaguauuug gagcucauaa aauacuggaa 60
guguuuagga guaaugcuca guugucagaa 90
//
ID cel-mir-1829b standard; RNA; CEL; 60 BP.
XX
AC MI0008198;
XX
DE Caenorhabditis elegans miR-1829b stem-loop
XX
RN [1]
RX PUBMED; 18392026.
RA Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S,
RA Rajewsky N;
RT "Discovering microRNAs from deep sequencing data using miRDeep";
RL Nat Biotechnol. 26:407-415(2008).
XX
RN [2]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [3]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..23
FT /accession="MIMAT0006770"
FT /product="cel-miR-1829b-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2], CLIPseq [3]"
FT miRNA 39..60
FT /accession="MIMAT0032037"
FT /product="cel-miR-1829b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 60 BP; 19 A; 11 C; 10 G; 0 T; 20 other;
aagcgaucuu cuagaugguu guaaaacauc gaguauuaca accacuggaa uuucucuauu 60
//
ID cel-mir-1829c standard; RNA; CEL; 62 BP.
XX
AC MI0008199;
XX
DE Caenorhabditis elegans miR-1829c stem-loop
XX
RN [1]
RX PUBMED; 18392026.
RA Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S,
RA Rajewsky N;
RT "Discovering microRNAs from deep sequencing data using miRDeep";
RL Nat Biotechnol. 26:407-415(2008).
XX
RN [2]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [3]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..23
FT /accession="MIMAT0006771"
FT /product="cel-miR-1829c-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2], CLIPseq [3]"
FT miRNA 39..60
FT /accession="MIMAT0032038"
FT /product="cel-miR-1829c-3p"
FT /evidence=not_experimental
XX
SQ Sequence 62 BP; 22 A; 12 C; 11 G; 0 T; 17 other;
aagcgaaauu caagaugguu guaaaacauc gaguacuaca accacuggaa uuucucuauu 60
gc 62
//
ID cel-mir-1830 standard; RNA; CEL; 70 BP.
XX
AC MI0008200;
XX
DE Caenorhabditis elegans miR-1830 stem-loop
XX
RN [1]
RX PUBMED; 18392026.
RA Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S,
RA Rajewsky N;
RT "Discovering microRNAs from deep sequencing data using miRDeep";
RL Nat Biotechnol. 26:407-415(2008).
XX
RN [2]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [3]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..23
FT /accession="MIMAT0006772"
FT /product="cel-miR-1830-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2-3]"
FT miRNA 48..70
FT /accession="MIMAT0020778"
FT /product="cel-miR-1830-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 70 BP; 18 A; 18 C; 19 G; 0 T; 15 other;
cgagguuuca cguuuucuag gccacgccgc aaauagccag cuuguggccu aggaaaugag 60
aaaacucggc 70
//
ID cel-mir-1832a standard; RNA; CEL; 64 BP.
XX
AC MI0008202;
XX
DE Caenorhabditis elegans miR-1832 stem-loop
XX
RN [1]
RX PUBMED; 18392026.
RA Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S,
RA Rajewsky N;
RT "Discovering microRNAs from deep sequencing data using miRDeep";
RL Nat Biotechnol. 26:407-415(2008).
XX
RN [2]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..23
FT /accession="MIMAT0032039"
FT /product="cel-miR-1832a-5p"
FT /evidence=not_experimental
FT miRNA 44..64
FT /accession="MIMAT0006774"
FT /product="cel-miR-1832a-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 64 BP; 15 A; 17 C; 19 G; 0 T; 13 other;
cagcgauucg aacuccgccc acugcaccug auugguugac aagugggcgg agcgaaucga 60
ugau 64
//
ID gga-mir-214 standard; RNA; GGA; 110 BP.
XX
AC MI0008208;
XX
DE Gallus gallus miR-214 stem-loop
XX
RN [1]
RX PUBMED; 18511220.
RA Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH;
RT "Identification of novel chicken microRNAs and analysis of their genomic
RT organization";
RL Gene. 418:34-40(2008).
XX
DR ENTREZGENE; 100315861; MIR214.
XX
FH Key Location/Qualifiers
FH
FT miRNA 71..91
FT /accession="MIMAT0007751"
FT /product="gga-miR-214"
FT /evidence=experimental
FT /experiment="Northern [1]"
XX
SQ Sequence 110 BP; 25 A; 33 C; 28 G; 0 T; 24 other;
ggacuggcug gacggaguug ucaugugucu gccugucuac acuugcugug cagaacaucc 60
ucucaccugu acagcaggca cagacaggca gucacaugac aacccagccu 110
//
ID gga-mir-124a-2 standard; RNA; GGA; 98 BP.
XX
AC MI0008210;
XX
DE Gallus gallus miR-124a-2 stem-loop
XX
RN [1]
RX PUBMED; 18511220.
RA Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH;
RT "Identification of novel chicken microRNAs and analysis of their genomic
RT organization";
RL Gene. 418:34-40(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315938; MIR124A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..37
FT /accession="MIMAT0026511"
FT /product="gga-miR-124a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 53..74
FT /accession="MIMAT0001128"
FT /product="gga-miR-124a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000444"
XX
SQ Sequence 98 BP; 24 A; 27 C; 23 G; 0 T; 24 other;
ccgagccucu cucugcgugu ucacagcgga ccuugauuua auguccauac aauuaaggca 60
cgcggugaau gccaagagag gagccucaca gcuucauu 98
//
ID ssc-mir-199b standard; RNA; SSC; 74 BP.
XX
AC MI0008219;
XX
DE Sus scrofa miR-199b stem-loop
XX
RN [1]
RX PUBMED; 18548309.
RA Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS;
RT "Identification and characterization of new microRNAs from pig";
RL Mamm Genome. 19:570-580(2008).
XX
RN [2]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [3]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [4]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [5]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316575; MIR199B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0017339"
FT /product="ssc-miR-199b-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT miRNA 46..67
FT /accession="MIMAT0007760"
FT /product="ssc-miR-199b-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2,4-5]"
XX
SQ Sequence 74 BP; 16 A; 18 C; 17 G; 0 T; 23 other;
ccgucuaccc aguguuuaga cuaucuguuc aggacuccca aauuguacag uagucugcac 60
auugguuagg cugg 74
//
ID hsa-mir-1910 standard; RNA; HSA; 80 BP.
XX
AC MI0008331;
XX
DE Homo sapiens miR-1910 stem-loop
XX
RN [1]
RX PUBMED; 18583537.
RA Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite
RA A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R,
RA Ruohola-Baker H, Tewari M;
RT "MicroRNA discovery and profiling in human embryonic stem cells by deep
RT sequencing of small RNA libraries";
RL Stem Cells. 26:2496-2505(2008).
XX
RN [2]
RX PUBMED; 23226537.
RA Ple H, Landry P, Benham A, Coarfa C, Gunaratne PH, Provost P;
RT "The repertoire and features of human platelet microRNAs";
RL PLoS One. 7:e50746(2012).
XX
DR HGNC; 35394; MIR1910.
DR ENTREZGENE; 100302261; MIR1910.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0007884"
FT /product="hsa-miR-1910-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 51..70
FT /accession="MIMAT0026917"
FT /product="hsa-miR-1910-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 80 BP; 15 A; 21 C; 26 G; 0 T; 18 other;
ugucccuuca gccaguccug ugccugccgc cuuugugcug uccuuggagg gaggcagaag 60
caggaugaca augagggcaa 80
//
ID hsa-mir-1912 standard; RNA; HSA; 80 BP.
XX
AC MI0008333;
XX
DE Homo sapiens miR-1912 stem-loop
XX
RN [1]
RX PUBMED; 18583537.
RA Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite
RA A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R,
RA Ruohola-Baker H, Tewari M;
RT "MicroRNA discovery and profiling in human embryonic stem cells by deep
RT sequencing of small RNA libraries";
RL Stem Cells. 26:2496-2505(2008).
XX
RN [2]
RX PUBMED; 19784364.
RA Goff LA, Davila J, Swerdel MR, Moore JC, Cohen RI, Wu H, Sun YE, Hart RP;
RT "Ago2 immunoprecipitation identifies predicted microRNAs in human
RT embryonic stem cells and neural precursors";
RL PLoS One. 4:e7192(2009).
XX
RN [3]
RX PUBMED; 25822230.
RA Asikainen S, Heikkinen L, Juhila J, Holm F, Weltner J, Trokovic R, Mikkola
RA M, Toivonen S, Balboa D, Lampela R, Icay K, Tuuri T, Otonkoski T, Wong G,
RA Hovatta O;
RT "Selective microRNA-Offset RNA expression in human embryonic stem cells";
RL PLoS One. 10:e0116668(2015).
XX
DR HGNC; 35396; MIR1912.
DR ENTREZGENE; 100302144; MIR1912.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0037333"
FT /product="hsa-miR-1912-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 46..67
FT /accession="MIMAT0007887"
FT /product="hsa-miR-1912-3p"
FT /evidence=experimental
FT /experiment="454 [1], SOLiD [2]"
XX
SQ Sequence 80 BP; 23 A; 13 C; 19 G; 0 T; 25 other;
cucuaggaug ugcucauugc augggcugug uauaguauua uucaauaccc agagcaugca 60
gugugaacau aauagagauu 80
//
ID hsa-mir-1914 standard; RNA; HSA; 80 BP.
XX
AC MI0008335;
XX
DE Homo sapiens miR-1914 stem-loop
XX
RN [1]
RX PUBMED; 18583537.
RA Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite
RA A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R,
RA Ruohola-Baker H, Tewari M;
RT "MicroRNA discovery and profiling in human embryonic stem cells by deep
RT sequencing of small RNA libraries";
RL Stem Cells. 26:2496-2505(2008).
XX
DR HGNC; 35398; MIR1914.
DR ENTREZGENE; 100302137; MIR1914.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0007889"
FT /product="hsa-miR-1914-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 50..71
FT /accession="MIMAT0007890"
FT /product="hsa-miR-1914-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 80 BP; 8 A; 31 C; 26 G; 0 T; 15 other;
cgugugagcc cgcccugugc ccggcccacu ucugcuuccu cuuagcgcag gagggguccc 60
gcacugggag gggcccucac 80
//
ID bmo-mir-2a-1 standard; RNA; BMO; 90 BP.
XX
AC MI0008338;
XX
DE Bombyx mori miR-2a-1 stem-loop
XX
RN [1]
RX PUBMED; 18507836.
RA He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X,
RA Jin Y, Zhang Y;
RT "Identification and characteristics of microRNAs from Bombyx mori";
RL BMC Genomics. 9:248(2008).
XX
RN [2]
RX PUBMED; 18977439.
RA Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y;
RT "Identification of conserved microRNAs in Bombyx mori (silkworm) and
RT regulation of fibroin L chain production by microRNAs in heterologous
RT system";
RL Insect Biochem Mol Biol. 38:1066-1071(2008).
XX
RN [3]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0015271"
FT /product="bmo-miR-2a-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 54..76
FT /accession="MIMAT0007894"
FT /product="bmo-miR-2a-3p"
FT /evidence=experimental
FT /experiment="Northern [1], RT-PCR [2], Illumina [3]"
XX
SQ Sequence 90 BP; 23 A; 19 C; 23 G; 0 T; 25 other;
ggcggaaugu agucguggca ucaaagucgg uuugucauag gucauaacgu aacuaucaca 60
gccagcuuug augagcacga cuucaucugu 90
//
ID bmo-mir-2a-2 standard; RNA; BMO; 80 BP.
XX
AC MI0008339;
XX
DE Bombyx mori miR-2a-2 stem-loop
XX
RN [1]
RX PUBMED; 18507836.
RA He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X,
RA Jin Y, Zhang Y;
RT "Identification and characteristics of microRNAs from Bombyx mori";
RL BMC Genomics. 9:248(2008).
XX
RN [2]
RX PUBMED; 18977439.
RA Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y;
RT "Identification of conserved microRNAs in Bombyx mori (silkworm) and
RT regulation of fibroin L chain production by microRNAs in heterologous
RT system";
RL Insect Biochem Mol Biol. 38:1066-1071(2008).
XX
RN [3]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0015272"
FT /product="bmo-miR-2a-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 52..74
FT /accession="MIMAT0007894"
FT /product="bmo-miR-2a-3p"
FT /evidence=experimental
FT /experiment="Northern [1], RT-PCR [2], Illumina [3]"
XX
SQ Sequence 80 BP; 18 A; 16 C; 19 G; 0 T; 27 other;
aauguuucgu cgcucacaaa gugguugucg uaugcguuuu uacuuuggcc auaucacagc 60
cagcuuugau gagcgaugaa 80
//
ID bmo-mir-2b standard; RNA; BMO; 76 BP.
XX
AC MI0008340;
XX
DE Bombyx mori miR-2b stem-loop
XX
RN [1]
RX PUBMED; 18507836.
RA He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X,
RA Jin Y, Zhang Y;
RT "Identification and characteristics of microRNAs from Bombyx mori";
RL BMC Genomics. 9:248(2008).
XX
RN [2]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0015273"
FT /product="bmo-miR-2b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 46..68
FT /accession="MIMAT0007895"
FT /product="bmo-miR-2b-3p"
FT /evidence=experimental
FT /experiment="Northern [1], Illumina [2]"
XX
SQ Sequence 76 BP; 16 A; 17 C; 23 G; 0 T; 20 other;
cgcuagaacu cgacaaggug guugugacau gggggcucag gaucauauca cagccagcuu 60
uguugaguuc ucggcu 76
//
ID bmo-mir-13b standard; RNA; BMO; 80 BP.
XX
AC MI0008342;
XX
DE Bombyx mori miR-13b stem-loop
XX
RN [1]
RX PUBMED; 18507836.
RA He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X,
RA Jin Y, Zhang Y;
RT "Identification and characteristics of microRNAs from Bombyx mori";
RL BMC Genomics. 9:248(2008).
XX
RN [2]
RX PUBMED; 18714353.
RA Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J;
RT "The silkworm (Bombyx mori) microRNAs and their expressions in multiple
RT developmental stages";
RL PLoS One. 3:e2997(2008).
XX
RN [3]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0015274"
FT /product="bmo-miR-13b-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 48..70
FT /accession="MIMAT0007898"
FT /product="bmo-miR-13b-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2], Illumina [3]"
XX
SQ Sequence 80 BP; 17 A; 20 C; 20 G; 0 T; 23 other;
guccauggcc cacucguaaa aauggcugug ucguguagca acccucauau cacagccauu 60
uuugacgagu ugggcugugu 80
//
ID bmo-mir-281 standard; RNA; BMO; 77 BP.
XX
AC MI0008348;
XX
DE Bombyx mori miR-281 stem-loop
XX
RN [1]
RX PUBMED; 18507836.
RA He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X,
RA Jin Y, Zhang Y;
RT "Identification and characteristics of microRNAs from Bombyx mori";
RL BMC Genomics. 9:248(2008).
XX
RN [2]
RX PUBMED; 18977439.
RA Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y;
RT "Identification of conserved microRNAs in Bombyx mori (silkworm) and
RT regulation of fibroin L chain production by microRNAs in heterologous
RT system";
RL Insect Biochem Mol Biol. 38:1066-1071(2008).
XX
RN [3]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0007904"
FT /product="bmo-miR-281-5p"
FT /evidence=experimental
FT /experiment="Northern [1], RT-PCR [2], Illumina [3]"
FT miRNA 46..67
FT /accession="MIMAT0007905"
FT /product="bmo-miR-281-3p"
FT /evidence=experimental
FT /experiment="Northern [1], RT-PCR [2], Illumina [3]"
XX
SQ Sequence 77 BP; 21 A; 14 C; 18 G; 0 T; 24 other;
ucuguuaaug aagagagcua uccgucgaca guauugcuga uaaacacugu cauggaguug 60
cucucuuuau gaacgga 77
//
ID bmo-mir-317 standard; RNA; BMO; 92 BP.
XX
AC MI0008349;
XX
DE Bombyx mori miR-317 stem-loop
XX
RN [1]
RX PUBMED; 18507836.
RA He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X,
RA Jin Y, Zhang Y;
RT "Identification and characteristics of microRNAs from Bombyx mori";
RL BMC Genomics. 9:248(2008).
XX
RN [2]
RX PUBMED; 18714353.
RA Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J;
RT "The silkworm (Bombyx mori) microRNAs and their expressions in multiple
RT developmental stages";
RL PLoS One. 3:e2997(2008).
XX
RN [3]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0015277"
FT /product="bmo-miR-317-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 53..74
FT /accession="MIMAT0007906"
FT /product="bmo-miR-317-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000429"
XX
SQ Sequence 92 BP; 18 A; 23 C; 27 G; 0 T; 24 other;
gggcuaucga acgaccgggu gccacgcugu gcucucucga aaauuauggc ggagugaaca 60
cagcuggugg uaucucaguu guucccuagu uc 92
//
ID bta-mir-100 standard; RNA; BTA; 76 BP.
XX
AC MI0009720;
XX
DE Bos taurus miR-100 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313483; MIR100.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0009215"
FT /product="bta-miR-100"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000692"
XX
SQ Sequence 76 BP; 16 A; 17 C; 20 G; 0 T; 23 other;
ccuguugcca caaacccgua gauccgaacu ugugguggua gugcacacaa gcuugugucu 60
auagguaugu gucugu 76
//
ID bta-mir-101-1 standard; RNA; BTA; 83 BP.
XX
AC MI0009721;
XX
DE Bos taurus miR-101-1 stem-loop
XX
RN [1]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [2]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313303; MIR101-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..71
FT /accession="MIMAT0003520"
FT /product="bta-miR-101"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000148"
XX
SQ Sequence 83 BP; 21 A; 19 C; 22 G; 0 T; 21 other;
aggcugcccu ggcucaguua ucacagugcu gaugcugucc auucuaaagg uacaguacug 60
ugauaacuga aggauggcag cca 83
//
ID bta-mir-106b standard; RNA; BTA; 80 BP.
XX
AC MI0009724;
XX
DE Bos taurus miR-106b stem-loop
XX
RN [1]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [2]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100312991; MIR106B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0009218"
FT /product="bta-miR-106b"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000734"
XX
SQ Sequence 80 BP; 12 A; 21 C; 28 G; 0 T; 19 other;
ccugccgggg cuaaagugcu gacagugcag auaguggucc ugugugcuac cgcacugugg 60
guacuugcug cuccggcagg 80
//
ID bta-mir-129-1 standard; RNA; BTA; 72 BP.
XX
AC MI0009728;
XX
DE Bos taurus miR-129-1 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100312993; MIR129-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0009220"
FT /product="bta-miR-129"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000252"
XX
SQ Sequence 72 BP; 14 A; 19 C; 16 G; 0 T; 23 other;
ggaucuuuuu gcggucuggg cuugcuguuc cucucuacag uagucaggaa gcccuuaccc 60
caaaaaguau cu 72
//
ID bta-mir-129-2 standard; RNA; BTA; 94 BP.
XX
AC MI0009729;
XX
DE Bos taurus miR-129-2 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313304; MIR129-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0009221"
FT /product="bta-miR-129-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000637"
FT miRNA 58..79
FT /accession="MIMAT0009222"
FT /product="bta-miR-129-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000637"
XX
SQ Sequence 94 BP; 20 A; 29 C; 23 G; 0 T; 22 other;
cugcccuucg cgaaucuuuu ugcggucugg gcuugcugua cauaacucaa uagccggaag 60
cccuuacccc aaaaagcauu cgcggagggc gcac 94
//
ID bta-mir-130a standard; RNA; BTA; 89 BP.
XX
AC MI0009730;
XX
DE Bos taurus miR-130a stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100312994; MIR130A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 55..76
FT /accession="MIMAT0009223"
FT /product="bta-miR-130a"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000448"
XX
SQ Sequence 89 BP; 15 A; 22 C; 27 G; 0 T; 25 other;
ugcugcgggc cggagcucuu uucacauugu gcuacugucu gcgccuguca cuagcagugc 60
aauguuaaaa gggcauuggc ugugcagcg 89
//
ID bta-mir-130b standard; RNA; BTA; 82 BP.
XX
AC MI0009731;
XX
DE Bos taurus miR-130b stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
DR ENTREZGENE; 100312995; MIR130B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..72
FT /accession="MIMAT0009224"
FT /product="bta-miR-130b"
FT /evidence=experimental
FT /experiment="Array [3], qRT-PCR [3]"
FT /similarity="MI0000748"
XX
SQ Sequence 82 BP; 15 A; 26 C; 23 G; 0 T; 18 other;
ggccugccug acacucuuuc ccuguugcac uacugugcgc cccuggcaag cagugcaaug 60
augaaagggc aucggucagg cc 82
//
ID bta-mir-133a-2 standard; RNA; BTA; 87 BP.
XX
AC MI0009732;
XX
DE Bos taurus miR-133a-2 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313253; MIR133A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..73
FT /accession="MIMAT0009225"
FT /product="bta-miR-133a"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000450"
XX
SQ Sequence 87 BP; 23 A; 21 C; 18 G; 0 T; 25 other;
caaugcuuug cuagagcugg uaaaauggaa ccaaaucgcc ucuucaaugg auuugguccc 60
cuucaaccag cuguagcuau gcauuga 87
//
ID bta-mir-133a-1 standard; RNA; BTA; 95 BP.
XX
AC MI0009733;
XX
DE Bos taurus miR-133a-1 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313361; MIR133A-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 59..80
FT /accession="MIMAT0009225"
FT /product="bta-miR-133a"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0001248"
XX
SQ Sequence 95 BP; 25 A; 21 C; 23 G; 0 T; 26 other;
ugggaccgaa ugcuuugcua aagcugguaa aauggaacca aaucaacugu ucgauggauu 60
ugguccccuu caaccagcug uagcugcgca uugau 95
//
ID bta-mir-134 standard; RNA; BTA; 73 BP.
XX
AC MI0009735;
XX
DE Bos taurus miR-134 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100312997; MIR134.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0009227"
FT /product="bta-miR-134"
FT /evidence=not_experimental
FT /similarity="MI0010382"
XX
SQ Sequence 73 BP; 13 A; 25 C; 20 G; 0 T; 15 other;
cagggugugu gacugguuga ccagaguggc cagcacucgg uucacccucu gggccaccua 60
gucaccaacc cuc 73
//
ID bta-mir-136 standard; RNA; BTA; 92 BP.
XX
AC MI0009739;
XX
DE Bos taurus miR-136 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313362; MIR136.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0009230"
FT /product="bta-miR-136"
FT /evidence=not_experimental
FT /similarity="MI0000475"
XX
SQ Sequence 92 BP; 19 A; 21 C; 21 G; 0 T; 31 other;
uuggaugagc ccucggagga cuccauuugu uuugaugaug gauucuuacg cuccaucauc 60
gucucaaaug agucuucaga ggguuccauc au 92
//
ID bta-mir-141 standard; RNA; BTA; 90 BP.
XX
AC MI0009742;
XX
DE Bos taurus miR-141 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313001; MIR141.
XX
FH Key Location/Qualifiers
FH
FT miRNA 58..79
FT /accession="MIMAT0009232"
FT /product="bta-miR-141"
FT /evidence=not_experimental
FT /similarity="MI0000457"
XX
SQ Sequence 90 BP; 17 A; 24 C; 27 G; 0 T; 22 other;
gaccggcucu ggguccaucu uccagcacag uguuggaugg ucuaauggug aagcuccuaa 60
cacugucugg uaaagauggc ccccggcugg 90
//
ID bta-mir-144 standard; RNA; BTA; 84 BP.
XX
AC MI0009744;
XX
DE Bos taurus miR-144 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313254; MIR144.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..71
FT /accession="MIMAT0009234"
FT /product="bta-miR-144"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000460"
XX
SQ Sequence 84 BP; 22 A; 19 C; 21 G; 0 T; 22 other;
gggcccugac ugggauauca ucauauacug uaaguuugca acgagacacu acaguauaga 60
ugauguacua guccgggugc uccc 84
//
ID bta-mir-146a standard; RNA; BTA; 99 BP.
XX
AC MI0009746;
XX
DE Bos taurus miR-146a stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313305; MIR146A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..44
FT /accession="MIMAT0009236"
FT /product="bta-miR-146a"
FT /evidence=not_experimental
FT /similarity="MI0000477"
XX
SQ Sequence 99 BP; 21 A; 21 C; 21 G; 0 T; 36 other;
cccaugugua uccucagcuu ugagaacuga auuccauagg uugugucagu gucagaccug 60
ugaaguuuag uucuuuagcu gggauaucuc uaucauccu 99
//
ID bta-mir-147 standard; RNA; BTA; 80 BP.
XX
AC MI0009747;
XX
DE Bos taurus miR-147 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313003; MIR147.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..70
FT /accession="MIMAT0009237"
FT /product="bta-miR-147"
FT /evidence=not_experimental
FT /similarity="MI0010371"
XX
SQ Sequence 80 BP; 22 A; 14 C; 19 G; 0 T; 25 other;
uaugaaucua guggaaacac uucugcacag gcuagauuau ggauaccagu gugcggaaau 60
gcuucugcua cauuuuuagg 80
//
ID bta-mir-152 standard; RNA; BTA; 86 BP.
XX
AC MI0009748;
XX
DE Bos taurus miR-152 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313004; MIR152.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0009238"
FT /product="bta-miR-152"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000462"
XX
SQ Sequence 86 BP; 15 A; 28 C; 26 G; 0 T; 17 other;
uguccucccg gcccagguuc ugugauacac uccgacucgg gcucuggagc agucagugca 60
ugacagaacu ugggcccgga cggacc 86
//
ID bta-mir-154a standard; RNA; BTA; 84 BP.
XX
AC MI0009751;
XX
DE Bos taurus miR-154 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313005; MIR154.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0009240"
FT /product="bta-miR-154a"
FT /evidence=not_experimental
FT /similarity="MI0000480"
XX
SQ Sequence 84 BP; 21 A; 18 C; 17 G; 0 T; 28 other;
gcggaacuug aagauagguu auccguguag ccuucgcuuu acuugugacg aaucauacac 60
gguucaccua uuuuuuagua ccaa 84
//
ID bta-mir-16a standard; RNA; BTA; 89 BP.
XX
AC MI0009753;
XX
DE Bos taurus miR-16a stem-loop
XX
RN [1]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [2]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313007; MIR16A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0009242"
FT /product="bta-miR-16a"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000070"
XX
SQ Sequence 89 BP; 25 A; 15 C; 21 G; 0 T; 28 other;
gucagcagug ccuuagcagc acguaaauau ugguguuaag auucuaaaau uaucuccagu 60
auuaacugug cugcugaagu aagguuggc 89
//
ID bta-mir-183 standard; RNA; BTA; 70 BP.
XX
AC MI0009756;
XX
DE Bos taurus miR-183 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313256; MIR183.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0009245"
FT /product="bta-miR-183"
FT /evidence=not_experimental
FT /similarity="MI0000928"
XX
SQ Sequence 70 BP; 20 A; 14 C; 19 G; 0 T; 17 other;
cuguguaugg cacugguaga auucacugug aacagucucg gucagugaau uaccgaaggg 60
ccauaaacag 70
//
ID bta-mir-185 standard; RNA; BTA; 79 BP.
XX
AC MI0009758;
XX
DE Bos taurus miR-185 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313009; MIR185.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0009247"
FT /product="bta-miR-185"
FT /evidence=not_experimental
FT /similarity="MI0000482"
XX
SQ Sequence 79 BP; 10 A; 26 C; 27 G; 0 T; 16 other;
gggggugagg gacuggagag aaaggcaguu ccugaugguc cccuccccag gggcuggcuu 60
uccuccggcc ccuccuucc 79
//
ID bta-mir-188 standard; RNA; BTA; 86 BP.
XX
AC MI0009760;
XX
DE Bos taurus miR-188 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
DR ENTREZGENE; 100313366; MIR188.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0009249"
FT /product="bta-miR-188"
FT /evidence=experimental
FT /experiment="Array [3], qRT-PCR [3]"
FT /similarity="MI0000484"
XX
SQ Sequence 86 BP; 15 A; 26 C; 23 G; 0 T; 22 other;
ugcucccucu cucacauccc uugcauggug gagggugagc uuucugaaaa ccccucccac 60
augcaggguu ugcaggaugg ugagcc 86
//
ID bta-mir-24-1 standard; RNA; BTA; 68 BP.
XX
AC MI0009761;
XX
DE Bos taurus miR-24-1 stem-loop
XX
RN [1]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [2]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313011; MIR24-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0009250"
FT /product="bta-miR-24"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000080"
XX
SQ Sequence 68 BP; 16 A; 18 C; 16 G; 0 T; 18 other;
cuccggugcc uacugagcug auaucaguuc ucauuuuaca cacuggcuca guucagcagg 60
aacaggag 68
//
ID bta-mir-190a standard; RNA; BTA; 85 BP.
XX
AC MI0009762;
XX
DE Bos taurus miR-190a stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
DR ENTREZGENE; 100313351; MIR190A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0009251"
FT /product="bta-miR-190a"
FT /evidence=experimental
FT /experiment="Array [3], qRT-PCR [3]"
FT /similarity="MI0000486"
XX
SQ Sequence 85 BP; 22 A; 15 C; 14 G; 0 T; 34 other;
ugcaggccuc ugugugauau guuugauaua uuagguuguu auuuaaucca acuauauauc 60
aaacauauuc cuacaguguc uugcc 85
//
ID bta-mir-194-2 standard; RNA; BTA; 83 BP.
XX
AC MI0009765;
XX
DE Bos taurus miR-194 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313013; MIR194-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0009254"
FT /product="bta-miR-194"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000733"
XX
SQ Sequence 83 BP; 14 A; 24 C; 25 G; 0 T; 20 other;
uggcucccac ccccuguaac agcaacucca uguggaagua ccucuaguuc caguggggcu 60
gcuguuaucu gggguggggg cca 83
//
ID bta-mir-196a-2 standard; RNA; BTA; 85 BP.
XX
AC MI0009766;
XX
DE Bos taurus miR-196a-2 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313367; MIR196A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0009255"
FT /product="bta-miR-196a"
FT /evidence=not_experimental
FT /similarity="MI0000279"
XX
SQ Sequence 85 BP; 20 A; 14 C; 23 G; 0 T; 28 other;
agcugaucug uggcuuaggu aguuucaugu uguugggauu gaguuuugaa cucggcaaca 60
agaaacugcc ugaguuacau caguc 85
//
ID bta-mir-196a-1 standard; RNA; BTA; 102 BP.
XX
AC MI0009767;
XX
DE Bos taurus miR-196a-1 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313014; MIR196A-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0009255"
FT /product="bta-miR-196a"
FT /evidence=not_experimental
FT /similarity="MI0010360"
XX
SQ Sequence 102 BP; 26 A; 24 C; 24 G; 0 T; 28 other;
ugaacuggaa cugcugagug aauuagguag uuucauguug uugggccugg auuucugaac 60
acaacgacau uaaaccaccc gacucacggc aguuacugcu cc 102
//
ID bta-mir-199a-2 standard; RNA; BTA; 71 BP.
XX
AC MI0009770;
XX
DE Bos taurus miR-199a-2 stem-loop
XX
RN [1]
RX PUBMED; 17105755.
RA Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC,
RA Capuco AV, Smith TP;
RT "Discovery and profiling of bovine microRNAs from immune-related and
RT embryonic tissues";
RL Physiol Genomics. 29:35-43(2007).
XX
RN [2]
RX PUBMED; 17306260.
RA Gu Z, Eleswarapu S, Jiang H;
RT "Identification and characterization of microRNAs from the bovine adipose
RT tissue and mammary gland";
RL FEBS Lett. 581:981-988(2007).
XX
RN [3]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313016; MIR199A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0003544"
FT /product="bta-miR-199a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT /similarity="MI0000242"
FT miRNA 47..68
FT /accession="MIMAT0003746"
FT /product="bta-miR-199a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 71 BP; 15 A; 17 C; 20 G; 0 T; 19 other;
gccaacccag uguucagacu accuguucag ggggcucuga auguguacag uagucugcac 60
auugguuagg c 71
//
ID bta-mir-223 standard; RNA; BTA; 108 BP.
XX
AC MI0009782;
XX
DE Bos taurus miR-223 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
RN [4]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313022; MIR223.
XX
FH Key Location/Qualifiers
FH
FT miRNA 66..87
FT /accession="MIMAT0009270"
FT /product="bta-miR-223"
FT /evidence=experimental
FT /experiment="Array [3], qRT-PCR [3], cloned [4]"
FT /similarity="MI0000300"
XX
SQ Sequence 108 BP; 24 A; 29 C; 26 G; 0 T; 29 other;
cccagccucc ugcagugcca ugcuccgugu auuugacaag cugaguugga cacuccaugu 60
aguaguguca guuugucaaa uaccccaagu guggcauaug ccuagcag 108
//
ID bta-mir-28 standard; RNA; BTA; 86 BP.
XX
AC MI0009785;
XX
DE Bos taurus miR-28 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313370; MIR28.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0009272"
FT /product="bta-miR-28"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000086"
XX
SQ Sequence 86 BP; 16 A; 24 C; 22 G; 0 T; 24 other;
gguccuugcc cucaaggagc ucacagucua uugaguugcc uuucugacuu ucccacuaga 60
uugagagcuc cuggagggca ggcacu 86
//
ID bta-mir-296 standard; RNA; BTA; 78 BP.
XX
AC MI0009786;
XX
DE Bos taurus miR-296 stem-loop
XX
RN [1]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [2]
RX PUBMED; 23100578.
RA Muroya S, Taniguchi M, Shibata M, Oe M, Ojima K, Nakajima I, Chikuni K;
RT "Profiling of differentially expressed microRNA and the bioinformatic
RT target gene analyses in bovine fast- and slow-type muscles by massively
RT parallel sequencing";
RL J Anim Sci. 91:90-103(2013).
XX
DR ENTREZGENE; 100313259; MIR296.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..31
FT /accession="MIMAT0026918"
FT /product="bta-miR-296-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 47..68
FT /accession="MIMAT0009273"
FT /product="bta-miR-296-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000747"
XX
SQ Sequence 78 BP; 10 A; 22 C; 27 G; 0 T; 19 other;
aggacccuuc cggagggccc cccccaaucc uguugugcuu gguucagagg guugggcgga 60
ggcuuuccug aagggucu 78
//
ID bta-mir-299 standard; RNA; BTA; 63 BP.
XX
AC MI0009787;
XX
DE Bos taurus miR-299 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313024; MIR299.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0009274"
FT /product="bta-miR-299"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000399"
XX
SQ Sequence 63 BP; 18 A; 13 C; 13 G; 0 T; 19 other;
aagaaauggu uuaccguccc acauacauuc ugaauaugua ugugggacgg uaaaccgcuu 60
cuu 63
//
ID bta-mir-29d standard; RNA; BTA; 88 BP.
XX
AC MI0009788;
XX
DE Bos taurus miR-29d stem-loop
XX
RN [1]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [2]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
RN [3]
RX PUBMED; 23100578.
RA Muroya S, Taniguchi M, Shibata M, Oe M, Ojima K, Nakajima I, Chikuni K;
RT "Profiling of differentially expressed microRNA and the bioinformatic
RT target gene analyses in bovine fast- and slow-type muscles by massively
RT parallel sequencing";
RL J Anim Sci. 91:90-103(2013).
XX
DR ENTREZGENE; 100313025; MIR29D.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0026919"
FT /product="bta-miR-29d-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 54..75
FT /accession="MIMAT0009275"
FT /product="bta-miR-29d-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000735"
XX
SQ Sequence 88 BP; 19 A; 17 C; 21 G; 0 T; 31 other;
aucucuuaca caggcugacc gauuucuccu gguguucaga gucuguuuuu gucuagcacc 60
auuugaaauc gauuaugaug uaggggga 88
//
ID bta-mir-32 standard; RNA; BTA; 70 BP.
XX
AC MI0009796;
XX
DE Bos taurus miR-32 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313372; MIR32.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0009283"
FT /product="bta-miR-32"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000090"
XX
SQ Sequence 70 BP; 16 A; 11 C; 18 G; 0 T; 25 other;
ggagguauug cacaugacua aguugcaugu ugucacggcc ucagugcaau uuaguaugug 60
ugauauuuuc 70
//
ID bta-mir-324 standard; RNA; BTA; 89 BP.
XX
AC MI0009798;
XX
DE Bos taurus miR-324 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313260; MIR324.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..40
FT /accession="MIMAT0009285"
FT /product="bta-miR-324"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000595"
XX
SQ Sequence 89 BP; 15 A; 27 C; 27 G; 0 T; 20 other;
aacuggcuau gccuccccgc auccccuagg gcauuggugu aaagcuggag acccacugcc 60
ccaggugcug cuggggguug uagucugac 89
//
ID bta-mir-330 standard; RNA; BTA; 94 BP.
XX
AC MI0009803;
XX
DE Bos taurus miR-330 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313033; MIR330.
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..79
FT /accession="MIMAT0009290"
FT /product="bta-miR-330"
FT /evidence=not_experimental
FT /similarity="MI0000803"
XX
SQ Sequence 94 BP; 19 A; 31 C; 26 G; 0 T; 18 other;
cuucggcgau cacugccucu cugggccugu gucuuaggcu cugcaagauc aaccgagcaa 60
agcacacggc cugcagagag gcagcgcuca gcuc 94
//
ID bta-mir-335 standard; RNA; BTA; 92 BP.
XX
AC MI0009804;
XX
DE Bos taurus miR-335 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19267191.
RA Long JE, Chen HX;
RT "Identification and characteristics of cattle microRNAs by homology
RT searching and small RNA cloning";
RL Biochem Genet. 47:329-343(2009).
XX
DR ENTREZGENE; 100313352; MIR335.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0009291"
FT /product="bta-miR-335"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000816"
XX
SQ Sequence 92 BP; 22 A; 20 C; 18 G; 0 T; 32 other;
uuuugggcgg gggucaagag caauaacgaa aaauguuugu cauaaaccgu uuuucauuau 60
ugcuccugac cuccucucau uugcuguacu ca 92
//
ID bta-mir-33a standard; RNA; BTA; 69 BP.
XX
AC MI0009807;
XX
DE Bos taurus miR-33a stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313374; MIR33A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0009294"
FT /product="bta-miR-33a"
FT /evidence=not_experimental
FT /similarity="MI0000091"
XX
SQ Sequence 69 BP; 12 A; 17 C; 19 G; 0 T; 21 other;
cugcggugca uuguaguugc auugcauguu cuggcgguac ccgugcaaug uuuccacagu 60
gcaucacag 69
//
ID bta-mir-340 standard; RNA; BTA; 95 BP.
XX
AC MI0009809;
XX
DE Bos taurus miR-340 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313037; MIR340.
XX
FH Key Location/Qualifiers
FH
FT miRNA 58..80
FT /accession="MIMAT0009296"
FT /product="bta-miR-340"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000802"
XX
SQ Sequence 95 BP; 21 A; 16 C; 22 G; 0 T; 36 other;
uuguaccugg ugugauuaua aagcaaugag acugauuguc augugucguu ugugggaucc 60
gucucaguua cuuuauagcc auaccuggua ucuua 95
//
ID bta-mir-362 standard; RNA; BTA; 65 BP.
XX
AC MI0009811;
XX
DE Bos taurus miR-362 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19267191.
RA Long JE, Chen HX;
RT "Identification and characteristics of cattle microRNAs by homology
RT searching and small RNA cloning";
RL Biochem Genet. 47:329-343(2009).
XX
RN [4]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313038; MIR362.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..28
FT /accession="MIMAT0009298"
FT /product="bta-miR-362-5p"
FT /evidence=experimental
FT /experiment="cloned [4]"
FT /similarity="MI0000762"
FT miRNA 42..62
FT /accession="MIMAT0012548"
FT /product="bta-miR-362-3p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
XX
SQ Sequence 65 BP; 18 A; 15 C; 14 G; 0 T; 18 other;
cucgaauccu uggaaccuag gugugagugc uguucuagug caacacaccu auucaaggau 60
ucaaa 65
//
ID bta-mir-370 standard; RNA; BTA; 75 BP.
XX
AC MI0009814;
XX
DE Bos taurus miR-370 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313039; MIR370.
XX
FH Key Location/Qualifiers
FH
FT miRNA 48..69
FT /accession="MIMAT0009300"
FT /product="bta-miR-370"
FT /evidence=not_experimental
FT /similarity="MI0000778"
XX
SQ Sequence 75 BP; 14 A; 21 C; 24 G; 0 T; 16 other;
aggcagagaa gccaggucac gucucugcag uuacaccgcu cacgagugcc ugcuggggug 60
gaaccugguc ugucu 75
//
ID bta-mir-374b standard; RNA; BTA; 95 BP.
XX
AC MI0009816;
XX
DE Bos taurus miR-374b stem-loop
XX
RN [1]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [2]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313262; MIR374B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0009302"
FT /product="bta-miR-374b"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0004125"
XX
SQ Sequence 95 BP; 24 A; 21 C; 19 G; 0 T; 31 other;
gaagaaaucc uacucggaug gauauaauac aaccugcuaa guguccuagc acuuaucagg 60
uuguauuauc auuguccgug ucuauggcuc ucguc 95
//
ID bta-mir-377 standard; RNA; BTA; 69 BP.
XX
AC MI0009818;
XX
DE Bos taurus miR-377 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313376; MIR377.
XX
FH Key Location/Qualifiers
FH
FT miRNA 45..66
FT /accession="MIMAT0009304"
FT /product="bta-miR-377"
FT /evidence=not_experimental
FT /similarity="MI0000785"
XX
SQ Sequence 69 BP; 16 A; 11 C; 16 G; 0 T; 26 other;
uugagcagag guugcccuug gugaauucgc uuuauuuaug uugaaucaca caaaggcaac 60
uuuuguuug 69
//
ID bta-mir-378-1 standard; RNA; BTA; 66 BP.
XX
AC MI0009819;
XX
DE Bos taurus miR-378 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
RN [4]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313042; MIR378.
XX
FH Key Location/Qualifiers
FH
FT miRNA 43..64
FT /accession="MIMAT0009305"
FT /product="bta-miR-378"
FT /evidence=experimental
FT /experiment="Array [3], qRT-PCR [3], cloned [4]"
FT /similarity="MI0000795"
XX
SQ Sequence 66 BP; 14 A; 17 C; 19 G; 0 T; 16 other;
agggcuccug acuccagguc cuguguguua ccucgaaaua gcacuggacu uggagucaga 60
aggccu 66
//
ID bta-mir-379 standard; RNA; BTA; 86 BP.
XX
AC MI0009820;
XX
DE Bos taurus miR-379 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313043; MIR379.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0009306"
FT /product="bta-miR-379"
FT /evidence=not_experimental
FT /similarity="MI0003541"
XX
SQ Sequence 86 BP; 21 A; 17 C; 20 G; 0 T; 28 other;
ugguuccugc agagauggua gacuauggaa cguaggcuuu gugauuuuug accuauguaa 60
caugguccac uaacucucag uaucca 86
//
ID bta-mir-381 standard; RNA; BTA; 75 BP.
XX
AC MI0009821;
XX
DE Bos taurus miR-381 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
DR ENTREZGENE; 100313044; MIR381.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..70
FT /accession="MIMAT0009307"
FT /product="bta-miR-381"
FT /evidence=experimental
FT /experiment="Array [3], qRT-PCR [3]"
FT /similarity="MI0010390"
XX
SQ Sequence 75 BP; 18 A; 12 C; 19 G; 0 T; 26 other;
uacucagagc gagguugccc uuuguauauu cgguuuuuug auguagaaua uacaagggca 60
agcucucugu gagua 75
//
ID bta-mir-382 standard; RNA; BTA; 76 BP.
XX
AC MI0009822;
XX
DE Bos taurus miR-382 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
RN [4]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313454; MIR382.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0009308"
FT /product="bta-miR-382"
FT /evidence=experimental
FT /experiment="Array [3], qRT-PCR [3], cloned [4]"
FT /similarity="MI0000790"
XX
SQ Sequence 76 BP; 20 A; 13 C; 16 G; 0 T; 27 other;
uacuugaaga gaaguuguuc gugguggauu cgcuuuacuu augacgaauc auucacggac 60
aacacuuuuu ucagua 76
//
ID bta-mir-409a standard; RNA; BTA; 79 BP.
XX
AC MI0009824;
XX
DE Bos taurus miR-409a stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313377; MIR409A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0009310"
FT /product="bta-miR-409a"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0001735"
XX
SQ Sequence 79 BP; 16 A; 19 C; 24 G; 0 T; 20 other;
ugguacgcgg ggagagguua cccgagcaac uuugcaucug gacgacgaau guugcucggu 60
gaaccccuuu ucgguauca 79
//
ID bta-mir-411a standard; RNA; BTA; 82 BP.
XX
AC MI0009826;
XX
DE Bos taurus miR-411 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313378; MIR411.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0009312"
FT /product="bta-miR-411a"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0003675"
XX
SQ Sequence 82 BP; 22 A; 18 C; 19 G; 0 T; 23 other;
ugguacuugg agagauagua gaccguauag cguacgcuuu aucugugacg uauguaacac 60
gguccacuaa cccucaguau ca 82
//
ID bta-mir-421 standard; RNA; BTA; 85 BP.
XX
AC MI0009828;
XX
DE Bos taurus miR-421 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313263; MIR421.
XX
FH Key Location/Qualifiers
FH
FT miRNA 48..70
FT /accession="MIMAT0009314"
FT /product="bta-miR-421"
FT /evidence=not_experimental
FT /similarity="MI0003685"
XX
SQ Sequence 85 BP; 26 A; 16 C; 17 G; 0 T; 26 other;
gcacauugua ggccucauua aauguuuguu gaaugaaaaa augaaucauc aacagacauu 60
aauugggcgc cugcucugug aucuc 85
//
ID bta-mir-432 standard; RNA; BTA; 90 BP.
XX
AC MI0009831;
XX
DE Bos taurus miR-432 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313048; MIR432.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0009317"
FT /product="bta-miR-432"
FT /evidence=not_experimental
FT /similarity="MI0010403"
XX
SQ Sequence 90 BP; 13 A; 23 C; 25 G; 0 T; 29 other;
gcaugacucc uccaagucuu ggaguagguc auugggugga uccuuuauuu cccuaugugg 60
gccacuggau ggcuccucca ugucuuggcg 90
//
ID bta-mir-452 standard; RNA; BTA; 85 BP.
XX
AC MI0009838;
XX
DE Bos taurus miR-452 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313473; MIR452.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0009324"
FT /product="bta-miR-452"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0001733"
XX
SQ Sequence 85 BP; 26 A; 17 C; 17 G; 0 T; 25 other;
gcuaagcacu uacaacuguu ugcagaggaa acugagacuu uguaacuaua ucucagucuc 60
aucugcaaag aaguaagugc uuugc 85
//
ID bta-mir-454 standard; RNA; BTA; 114 BP.
XX
AC MI0009840;
XX
DE Bos taurus miR-454 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313455; MIR454.
XX
FH Key Location/Qualifiers
FH
FT miRNA 63..85
FT /accession="MIMAT0009326"
FT /product="bta-miR-454"
FT /evidence=not_experimental
FT /similarity="MI0003820"
XX
SQ Sequence 114 BP; 28 A; 18 C; 28 G; 0 T; 40 other;
cuguuuauua ccagauccua gaacccuauc gauauugucu cugcugugua aauagcucug 60
aguagugcaa uauugcuuau aggguuuugg uguuugggaa gaacaauggg caug 114
//
ID bta-mir-485 standard; RNA; BTA; 73 BP.
XX
AC MI0009842;
XX
DE Bos taurus miR-485 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313054; MIR485.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0009328"
FT /product="bta-miR-485"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0002469"
XX
SQ Sequence 73 BP; 18 A; 17 C; 17 G; 0 T; 21 other;
acuugaagag aggcuggccg ugaugaauuc gauucaucaa agcgagucau acacggcucu 60
ccucucuuuu agu 73
//
ID bta-mir-490 standard; RNA; BTA; 127 BP.
XX
AC MI0009845;
XX
DE Bos taurus miR-490 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313056; MIR490.
XX
FH Key Location/Qualifiers
FH
FT miRNA 75..96
FT /accession="MIMAT0009331"
FT /product="bta-miR-490"
FT /evidence=not_experimental
FT /similarity="MI0003125"
XX
SQ Sequence 127 BP; 30 A; 29 C; 34 G; 0 T; 34 other;
uggagacuug cugguuugga aaguucauug uucgacacca uggaucucca ggugggucac 60
guuuagagau acaccaaccu ggaggacucc augcuguuga gcuguucaca agcagcggac 120
acuucua 127
//
ID bta-mir-491 standard; RNA; BTA; 84 BP.
XX
AC MI0009846;
XX
DE Bos taurus miR-491 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313265; MIR491.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0009332"
FT /product="bta-miR-491"
FT /evidence=not_experimental
FT /similarity="MI0003126"
XX
SQ Sequence 84 BP; 18 A; 19 C; 23 G; 0 T; 24 other;
uugacuuagc uggguagugg ggaacccuuc caugaggagu agaacacucc uuaugcaaga 60
uucccuucua ccugacuggg uugg 84
//
ID bta-mir-493 standard; RNA; BTA; 89 BP.
XX
AC MI0009847;
XX
DE Bos taurus miR-493 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313057; MIR493.
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..78
FT /accession="MIMAT0009333"
FT /product="bta-miR-493"
FT /evidence=not_experimental
FT /similarity="MI0003132"
XX
SQ Sequence 89 BP; 13 A; 25 C; 25 G; 0 T; 26 other;
cuggccccca gggccuugua caugguaggc uuucauucau ucguuugcac auucggugaa 60
ggucuacugu gugccaggcc cugugccag 89
//
ID bta-mir-500 standard; RNA; BTA; 84 BP.
XX
AC MI0009851;
XX
DE Bos taurus miR-500 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19267191.
RA Long JE, Chen HX;
RT "Identification and characteristics of cattle microRNAs by homology
RT searching and small RNA cloning";
RL Biochem Genet. 47:329-343(2009).
XX
RN [4]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313059; MIR500.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0009337"
FT /product="bta-miR-500"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT /similarity="MI0003184"
XX
SQ Sequence 84 BP; 17 A; 22 C; 24 G; 0 T; 21 other;
gcucccccuc ucuaauccuu gcuaccuggg ugagagugcu uucugaaugc aaugcaccug 60
ggcaaggauu cugagagagg gagc 84
//
ID bta-mir-541 standard; RNA; BTA; 84 BP.
XX
AC MI0009858;
XX
DE Bos taurus miR-541 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19170227.
RA Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker
RA M;
RT "Identification and expression profiling of microRNAs during bovine oocyte
RT maturation using heterologous approach";
RL Mol Reprod Dev. 76:665-677(2009).
XX
DR ENTREZGENE; 100313266; MIR541.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..75
FT /accession="MIMAT0009343"
FT /product="bta-miR-541"
FT /evidence=experimental
FT /experiment="Array [3], qRT-PCR [3]"
FT /similarity="MI0005539"
XX
SQ Sequence 84 BP; 20 A; 20 C; 25 G; 0 T; 19 other;
acgucaggga aaggauucug cugucggucc cacuccaaag uucaaaaaau gggugguggg 60
cacagaaucc ggccucugcu ugug 84
//
ID bta-mir-543 standard; RNA; BTA; 80 BP.
XX
AC MI0009859;
XX
DE Bos taurus miR-543 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313063; MIR543.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..70
FT /accession="MIMAT0009344"
FT /product="bta-miR-543"
FT /evidence=not_experimental
FT /similarity="MI0003525"
XX
SQ Sequence 80 BP; 15 A; 16 C; 19 G; 0 T; 30 other;
ggugcuuaag gagaaguugc ccgugucuuu uucgcuuuau augugacgaa acauucgcgg 60
ugcacuucuu uuucaguauc 80
//
ID bta-mir-582 standard; RNA; BTA; 98 BP.
XX
AC MI0009867;
XX
DE Bos taurus miR-582 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313067; MIR582.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0009351"
FT /product="bta-miR-582"
FT /evidence=not_experimental
FT /similarity="MI0003589"
XX
SQ Sequence 98 BP; 32 A; 20 C; 16 G; 0 T; 30 other;
aucuguucuc uuugguuaca guuguucaac caguuacuaa ucuaccuaau uguaaccagu 60
ugaacaacug aacccaaagg gugcaaagug aaaacauu 98
//
ID bta-mir-615 standard; RNA; BTA; 93 BP.
XX
AC MI0009877;
XX
DE Bos taurus miR-615 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313387; MIR615.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0009355"
FT /product="bta-miR-615"
FT /evidence=not_experimental
FT /similarity="MI0003628"
XX
SQ Sequence 93 BP; 7 A; 33 C; 34 G; 0 T; 19 other;
cucgggaggg gcgggagggg gguccccggu gcucggaucu cgagggugcu uauuguucgg 60
uccgagccug ggucucccuc uccccccacc ccc 93
//
ID bta-mir-628 standard; RNA; BTA; 95 BP.
XX
AC MI0009878;
XX
DE Bos taurus miR-628 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313073; MIR628.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0009356"
FT /product="bta-miR-628"
FT /evidence=not_experimental
FT /similarity="MI0003642"
XX
SQ Sequence 95 BP; 28 A; 16 C; 23 G; 0 T; 28 other;
auagcuguug ugucacuucc ucaugcugac auauuuacua gaggguaaaa uuaauaaccu 60
ucuaguaaga guggcagucg aagggaaggg cucau 95
//
ID bta-mir-671 standard; RNA; BTA; 118 BP.
XX
AC MI0009887;
XX
DE Bos taurus miR-671 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313389; MIR671.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..51
FT /accession="MIMAT0009365"
FT /product="bta-miR-671"
FT /evidence=not_experimental
FT /similarity="MI0003760"
XX
SQ Sequence 118 BP; 17 A; 32 C; 47 G; 0 T; 22 other;
gccgccgacc uggcaggcca ggaagaggag gaagcccugg aggggcugga ggugauggau 60
guuuuccucc gguucucagg gcuccaccuu uuccgggccg uggagccagg gcuggugc 118
//
ID bta-mir-708 standard; RNA; BTA; 109 BP.
XX
AC MI0009889;
XX
DE Bos taurus miR-708 stem-loop
XX
RN [1]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313079; MIR708.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..49
FT /accession="MIMAT0009367"
FT /product="bta-miR-708"
FT /evidence=not_experimental
FT /similarity="MI0004692"
XX
SQ Sequence 109 BP; 28 A; 23 C; 32 G; 0 T; 26 other;
cuguguguga agugguaacu gcccucaagg agcuuacaau cuagcugggg guaaacgacu 60
ugcacaugaa cgcaucuaga cugugagcuu cuagagggca gggaccuua 109
//
ID bta-mir-744 standard; RNA; BTA; 100 BP.
XX
AC MI0009891;
XX
DE Bos taurus miR-744 stem-loop
XX
RN [1]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313080; MIR744.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0009369"
FT /product="bta-miR-744"
FT /evidence=not_experimental
FT /similarity="MI0004124"
XX
SQ Sequence 100 BP; 19 A; 30 C; 31 G; 0 T; 20 other;
gguugggcgg ggugcggggc uagggcuaac agcaggcuca cugacgguuu cccggaaacc 60
acgcacaugc uguugccacu aaccucaacc uuacucgguc 100
//
ID bta-mir-760 standard; RNA; BTA; 117 BP.
XX
AC MI0009894;
XX
DE Bos taurus miR-760 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 22298343.
RA Guduric-Fuchs J, O'Connor A, Cullen A, Harwood L, Medina RJ, O'Neill CL,
RA Stitt AW, Curtis TM, Simpson DA;
RT "Deep sequencing reveals predominant expression of miR-21 amongst the
RT small non-coding RNAs in retinal microvascular endothelial cells";
RL J Cell Biochem. 113:2098-2111(2012).
XX
DR ENTREZGENE; 100313318; MIR760.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..52
FT /accession="MIMAT0009372"
FT /product="bta-miR-760-5p"
FT /evidence=not_experimental
FT /similarity="MI0004605"
FT miRNA 68..87
FT /accession="MIMAT0022951"
FT /product="bta-miR-760-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 117 BP; 23 A; 36 C; 36 G; 0 T; 22 other;
ggaggaugcu gcagcguggg gcgcgucgcc ccccucaguc caccagagcc cggauaccuu 60
agaaauucgg cucugggucu guggggagcg aaaugcaacc caaacuccau uuugccg 117
//
ID bta-mir-874 standard; RNA; BTA; 76 BP.
XX
AC MI0009900;
XX
DE Bos taurus miR-874 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313085; MIR874.
XX
FH Key Location/Qualifiers
FH
FT miRNA 45..66
FT /accession="MIMAT0009378"
FT /product="bta-miR-874"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0005479"
XX
SQ Sequence 76 BP; 13 A; 28 C; 24 G; 0 T; 11 other;
uuagcccugc ggccccacgc accaggguaa gagagacuca cuuccugccc uggcccgagg 60
gaccgacugg cugggc 76
//
ID bta-mir-9-1 standard; RNA; BTA; 90 BP.
XX
AC MI0009912;
XX
DE Bos taurus miR-9-1 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19267191.
RA Long JE, Chen HX;
RT "Identification and characteristics of cattle microRNAs by homology
RT searching and small RNA cloning";
RL Biochem Genet. 47:329-343(2009).
XX
RN [4]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313091; MIR9-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0009389"
FT /product="bta-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [4]"
FT /similarity="MI0000721"
FT miRNA 55..71
FT /accession="MIMAT0012549"
FT /product="bta-miR-9-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 90 BP; 25 A; 20 C; 21 G; 0 T; 24 other;
ggaggcccgu uucucucuuu gguuaucuag cuguaugagu gccacagagc cgucauaaag 60
cuagauaacc gaaaguagaa augacucuca 90
//
ID bta-mir-9-2 standard; RNA; BTA; 87 BP.
XX
AC MI0009913;
XX
DE Bos taurus miR-9-2 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [3]
RX PUBMED; 19267191.
RA Long JE, Chen HX;
RT "Identification and characteristics of cattle microRNAs by homology
RT searching and small RNA cloning";
RL Biochem Genet. 47:329-343(2009).
XX
RN [4]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313092; MIR9-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0009389"
FT /product="bta-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [4]"
FT /similarity="MI0000467"
FT miRNA 53..69
FT /accession="MIMAT0012549"
FT /product="bta-miR-9-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 87 BP; 26 A; 13 C; 19 G; 0 T; 29 other;
ggaagcgagu uguuaucuuu gguuaucuag cuguaugagu guauuggucu ucauaaagcu 60
agauaaccga aaguaaaaac uccuuca 87
//
ID mmu-mir-1933 standard; RNA; MMU; 88 BP.
XX
AC MI0009922;
XX
DE Mus musculus miR-1933 stem-loop
XX
RN [1]
RX PUBMED; 18849523.
RA Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M,
RA Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst
RA M, Hansen CL, Marra MA, Humphries RK;
RT "In-depth characterization of the microRNA transcriptome in a leukemia
RT progression model";
RL Genome Res. 18:1787-1797(2008).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3836970; Mir1933.
DR ENTREZGENE; 100316753; Mir1933.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..36
FT /accession="MIMAT0009396"
FT /product="mmu-miR-1933-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 55..76
FT /accession="MIMAT0009397"
FT /product="mmu-miR-1933-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
XX
SQ Sequence 88 BP; 18 A; 18 C; 22 G; 0 T; 30 other;
uccugauccc acagucaugg uguucggucu uaguuuguga ccaguuuagu uuaaccagga 60
ccaucagugu gacuauugga uugggacu 88
//
ID mmu-mir-1934 standard; RNA; MMU; 83 BP.
XX
AC MI0009923;
XX
DE Mus musculus miR-1934 stem-loop
XX
RN [1]
RX PUBMED; 18849523.
RA Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M,
RA Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst
RA M, Hansen CL, Marra MA, Humphries RK;
RT "In-depth characterization of the microRNA transcriptome in a leukemia
RT progression model";
RL Genome Res. 18:1787-1797(2008).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3836971; Mir1934.
DR ENTREZGENE; 100316840; Mir1934.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0009398"
FT /product="mmu-miR-1934-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 50..71
FT /accession="MIMAT0017341"
FT /product="mmu-miR-1934-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 83 BP; 10 A; 21 C; 28 G; 0 T; 24 other;
cugggccuuc uuucuggucc ccugcuucgu ccucugucca gauguuaaga ggaugacggu 60
ggggcuggug agauggcuca gcg 83
//
ID mmu-mir-1938 standard; RNA; MMU; 100 BP.
XX
AC MI0009927;
XX
DE Mus musculus miR-1938 stem-loop
XX
RN [1]
RX PUBMED; 18849523.
RA Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M,
RA Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst
RA M, Hansen CL, Marra MA, Humphries RK;
RT "In-depth characterization of the microRNA transcriptome in a leukemia
RT progression model";
RL Genome Res. 18:1787-1797(2008).
XX
DR MGI; 3836976; Mir1938.
DR ENTREZGENE; 100316693; Mir1938.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0009402"
FT /product="mmu-miR-1938"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 100 BP; 14 A; 28 C; 34 G; 0 T; 24 other;
cuggggcgcg gugggacuug uaguucgguc uucgcuucgg acgcccaagu cugcauagcg 60
cgugguacgg cugaacugca guucccauca ugcccuggga 100
//
ID mmu-mir-1941 standard; RNA; MMU; 83 BP.
XX
AC MI0009930;
XX
DE Mus musculus miR-1941 stem-loop
XX
RN [1]
RX PUBMED; 18849523.
RA Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M,
RA Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst
RA M, Hansen CL, Marra MA, Humphries RK;
RT "In-depth characterization of the microRNA transcriptome in a leukemia
RT progression model";
RL Genome Res. 18:1787-1797(2008).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3836979; Mir1941.
DR ENTREZGENE; 100316694; Mir1941.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..36
FT /accession="MIMAT0009405"
FT /product="mmu-miR-1941-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 50..70
FT /accession="MIMAT0009406"
FT /product="mmu-miR-1941-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
XX
SQ Sequence 83 BP; 16 A; 19 C; 30 G; 0 T; 18 other;
cagcagggug ggagggagau gcugguacag aggcuugggg uuuugagggc aucuuagcag 60
uaucucccau ccacccaccu ggg 83
//
ID mmu-mir-1943 standard; RNA; MMU; 73 BP.
XX
AC MI0009932;
XX
DE Mus musculus miR-1943 stem-loop
XX
RN [1]
RX PUBMED; 18849523.
RA Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M,
RA Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst
RA M, Hansen CL, Marra MA, Humphries RK;
RT "In-depth characterization of the microRNA transcriptome in a leukemia
RT progression model";
RL Genome Res. 18:1787-1797(2008).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3836982; Mir1943.
DR ENTREZGENE; 100316695; Mir1943.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0009408"
FT /product="mmu-miR-1943-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 45..65
FT /accession="MIMAT0017342"
FT /product="mmu-miR-1943-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 73 BP; 11 A; 27 C; 22 G; 0 T; 13 other;
ggcugggaag ggaggaucug ggcaccugga ccagcuccuc ccugcaggug ccagcuccuc 60
ccuucccagu cac 73
//
ID mmu-mir-1306 standard; RNA; MMU; 79 BP.
XX
AC MI0009935;
XX
DE Mus musculus miR-1306 stem-loop
XX
RN [1]
RX PUBMED; 18849523.
RA Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M,
RA Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst
RA M, Hansen CL, Marra MA, Humphries RK;
RT "In-depth characterization of the microRNA transcriptome in a leukemia
RT progression model";
RL Genome Res. 18:1787-1797(2008).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
RN [3]
RX PUBMED; 20935160.
RA Fehniger TA, Wylie T, Germino E, Leong JW, Magrini VJ, Koul S, Keppel CR,
RA Schneider SE, Koboldt DC, Sullivan RP, Heinz ME, Crosby SD, Nagarajan R,
RA Ramsingh G, Link DC, Ley TJ, Mardis ER;
RT "Next-generation sequencing identifies the natural killer cell microRNA
RT transcriptome";
RL Genome Res. 20:1590-1604(2010).
XX
DR MGI; 3836985; Mir1306.
DR ENTREZGENE; 100316814; Mir1306.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0019136"
FT /product="mmu-miR-1306-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 50..70
FT /accession="MIMAT0009411"
FT /product="mmu-miR-1306-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-3]"
XX
SQ Sequence 79 BP; 16 A; 23 C; 23 G; 0 T; 17 other;
cagucuccac caccuccccu gcaaacgucc agugaugcag agguaaugga cguuggcucu 60
gguggugaug gacaguccg 79
//
ID mmu-mir-1948 standard; RNA; MMU; 85 BP.
XX
AC MI0009939;
XX
DE Mus musculus miR-1948 stem-loop
XX
RN [1]
RX PUBMED; 18849523.
RA Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M,
RA Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst
RA M, Hansen CL, Marra MA, Humphries RK;
RT "In-depth characterization of the microRNA transcriptome in a leukemia
RT progression model";
RL Genome Res. 18:1787-1797(2008).
XX
RN [2]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
DR MGI; 3837020; Mir1948.
DR ENTREZGENE; 100316699; Mir1948.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0017344"
FT /product="mmu-miR-1948-5p"
FT /evidence=experimental
FT /experiment="454 [2]"
FT miRNA 52..73
FT /accession="MIMAT0009415"
FT /product="mmu-miR-1948-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 85 BP; 25 A; 15 C; 19 G; 0 T; 26 other;
auucucaccu uacuauauga guauucugcc uaaauguggu guacggauac auuuaggcag 60
agcacucgua caguaaggug agaau 85
//
ID mmu-mir-669l standard; RNA; MMU; 98 BP.
XX
AC MI0009942;
XX
DE Mus musculus miR-669l stem-loop
XX
RN [1]
RX PUBMED; 18849523.
RA Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M,
RA Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst
RA M, Hansen CL, Marra MA, Humphries RK;
RT "In-depth characterization of the microRNA transcriptome in a leukemia
RT progression model";
RL Genome Res. 18:1787-1797(2008).
XX
RN [2]
RX PUBMED; 18923076.
RA Babiarz JE, Ruby JG, Wang Y, Bartel DP, Blelloch R;
RT "Mouse ES cells express endogenous shRNAs, siRNAs, and other
RT Microprocessor-independent, Dicer-dependent small RNAs";
RL Genes Dev. 22:2773-2785(2008).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3837025; Mir669l.
DR ENTREZGENE; 100316815; Mir669l.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0009418"
FT /product="mmu-miR-669l-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-3]"
FT miRNA 57..78
FT /accession="MIMAT0017345"
FT /product="mmu-miR-669l-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 98 BP; 30 A; 16 C; 18 G; 0 T; 34 other;
guuugugcau gugcguauag uugugugugc auguauaugu guguauauga auauacauau 60
acauacacac ccauauauac acgcauucau augaacac 98
//
ID mmu-mir-669m-1 standard; RNA; MMU; 98 BP.
XX
AC MI0009943;
XX
DE Mus musculus miR-669m-1 stem-loop
XX
RN [1]
RX PUBMED; 18849523.
RA Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M,
RA Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst
RA M, Hansen CL, Marra MA, Humphries RK;
RT "In-depth characterization of the microRNA transcriptome in a leukemia
RT progression model";
RL Genome Res. 18:1787-1797(2008).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3837026; Mir669m-1.
DR ENTREZGENE; 100316701; Mir669m-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..47
FT /accession="MIMAT0017346"
FT /product="mmu-miR-669m-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 58..79
FT /accession="MIMAT0009419"
FT /product="mmu-miR-669m-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
XX
SQ Sequence 98 BP; 33 A; 15 C; 20 G; 0 T; 30 other;
uguaugugca uguguguaua guuuugugug caugugcaug uguguauaug aauagacaua 60
uacauccaca caaacauaua caagcaagca cagauaca 98
//
ID mmu-mir-669m-2 standard; RNA; MMU; 98 BP.
XX
AC MI0009944;
XX
DE Mus musculus miR-669m-2 stem-loop
XX
RN [1]
RX PUBMED; 18849523.
RA Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M,
RA Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst
RA M, Hansen CL, Marra MA, Humphries RK;
RT "In-depth characterization of the microRNA transcriptome in a leukemia
RT progression model";
RL Genome Res. 18:1787-1797(2008).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3837027; Mir669m-2.
DR ENTREZGENE; 100316834; Mir669m-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0017346"
FT /product="mmu-miR-669m-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 57..78
FT /accession="MIMAT0009419"
FT /product="mmu-miR-669m-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
XX
SQ Sequence 98 BP; 33 A; 15 C; 17 G; 0 T; 33 other;
auauuugcau guguguauag uuuugugugc augugcaugu guguauauga auauacauau 60
acauccacac aaacauauac aagcaugcac agauauac 98
//
ID mmu-mir-669o standard; RNA; MMU; 96 BP.
XX
AC MI0009945;
XX
DE Mus musculus miR-669o stem-loop
XX
RN [1]
RX PUBMED; 18849523.
RA Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M,
RA Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst
RA M, Hansen CL, Marra MA, Humphries RK;
RT "In-depth characterization of the microRNA transcriptome in a leukemia
RT progression model";
RL Genome Res. 18:1787-1797(2008).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3837028; Mir669o.
DR ENTREZGENE; 100316702; Mir669o.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0009421"
FT /product="mmu-miR-669o-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 56..78
FT /accession="MIMAT0017347"
FT /product="mmu-miR-669o-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 96 BP; 31 A; 17 C; 18 G; 0 T; 30 other;
ugcaugugca uguguguaua guugugugug cauguuuaug uguguauuug aauauacaua 60
acauacacac acacguauaa acacaagcac acacac 96
//
ID mmu-mir-1955 standard; RNA; MMU; 98 BP.
XX
AC MI0009950;
XX
DE Mus musculus miR-1955 stem-loop
XX
RN [1]
RX PUBMED; 18849523.
RA Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M,
RA Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst
RA M, Hansen CL, Marra MA, Humphries RK;
RT "In-depth characterization of the microRNA transcriptome in a leukemia
RT progression model";
RL Genome Res. 18:1787-1797(2008).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3837036; Mir1955.
DR ENTREZGENE; 100316756; Mir1955.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..42
FT /accession="MIMAT0009426"
FT /product="mmu-miR-1955-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 59..79
FT /accession="MIMAT0017348"
FT /product="mmu-miR-1955-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 98 BP; 26 A; 19 C; 21 G; 0 T; 32 other;
cugguuuacu uacuacaagu cccaggaugc acugcagcuu uuucuuaacu ucagauaaga 60
gcauugcaug cugggacaug uaguugguuu aaauagca 98
//
ID mmu-mir-1960 standard; RNA; MMU; 78 BP.
XX
AC MI0009957;
XX
DE Mus musculus miR-1960 stem-loop
XX
RN [1]
RX PUBMED; 18849523.
RA Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M,
RA Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst
RA M, Hansen CL, Marra MA, Humphries RK;
RT "In-depth characterization of the microRNA transcriptome in a leukemia
RT progression model";
RL Genome Res. 18:1787-1797(2008).
XX
DR MGI; 3837202; Mir1960.
DR ENTREZGENE; 100316709; Mir1960.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0009433"
FT /product="mmu-miR-1960"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 78 BP; 17 A; 18 C; 25 G; 0 T; 18 other;
cagagugagc agccagugcu guuagaagag ggcugagagc agggagagcu cucuucugca 60
gcacugacuu uuccucug 78
//
ID mmu-mir-1964 standard; RNA; MMU; 83 BP.
XX
AC MI0009961;
XX
DE Mus musculus miR-1964 stem-loop
XX
RN [1]
RX PUBMED; 18849523.
RA Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M,
RA Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst
RA M, Hansen CL, Marra MA, Humphries RK;
RT "In-depth characterization of the microRNA transcriptome in a leukemia
RT progression model";
RL Genome Res. 18:1787-1797(2008).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3837209; Mir1964.
DR ENTREZGENE; 100316711; Mir1964.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0017349"
FT /product="mmu-miR-1964-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 51..72
FT /accession="MIMAT0009437"
FT /product="mmu-miR-1964-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
XX
SQ Sequence 83 BP; 17 A; 21 C; 27 G; 0 T; 18 other;
cuuucuugcg aagcuggagc acaaaagccg gugccggugu gaugccuaca ccgacuucug 60
ggcuccggcu uuggaaggaa gga 83
//
ID mmu-mir-1968 standard; RNA; MMU; 68 BP.
XX
AC MI0009965;
XX
DE Mus musculus miR-1968 stem-loop
XX
RN [1]
RX PUBMED; 18849523.
RA Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M,
RA Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst
RA M, Hansen CL, Marra MA, Humphries RK;
RT "In-depth characterization of the microRNA transcriptome in a leukemia
RT progression model";
RL Genome Res. 18:1787-1797(2008).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3837215; Mir1968.
DR ENTREZGENE; 100316713; Mir1968.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..31
FT /accession="MIMAT0009441"
FT /product="mmu-miR-1968-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 44..64
FT /accession="MIMAT0017350"
FT /product="mmu-miR-1968-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 68 BP; 13 A; 17 C; 20 G; 0 T; 18 other;
ccuccucugc agcuguuaag gaugguggac uauuguuagg gccaccaccu cugcagcugu 60
uaaggagg 68
//
ID mmu-mir-1839 standard; RNA; MMU; 73 BP.
XX
AC MI0009991;
XX
DE Mus musculus miR-1839 stem-loop
XX
RN [1]
RX PUBMED; 18923076.
RA Babiarz JE, Ruby JG, Wang Y, Bartel DP, Blelloch R;
RT "Mouse ES cells express endogenous shRNAs, siRNAs, and other
RT Microprocessor-independent, Dicer-dependent small RNAs";
RL Genes Dev. 22:2773-2785(2008).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3837345; Mir1839.
DR ENTREZGENE; 100316717; Mir1839.
XX
CC This sequence was named mmu-mir-1980 in [1], but is a clear ortholog of
CC the mir-1839 sequence published in dog (MIR:MI0008087), so is renamed
CC here.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0009456"
FT /product="mmu-miR-1839-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 43..65
FT /accession="MIMAT0009457"
FT /product="mmu-miR-1839-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
XX
SQ Sequence 73 BP; 27 A; 15 C; 12 G; 0 T; 19 other;
gaaaagguag auagaacagg ucuuguuugc aaaauaaauu caagaccuac uuaucuacca 60
acagccauug ccu 73
//
ID mmu-mir-1981 standard; RNA; MMU; 82 BP.
XX
AC MI0009992;
XX
DE Mus musculus miR-1981 stem-loop
XX
RN [1]
RX PUBMED; 18923076.
RA Babiarz JE, Ruby JG, Wang Y, Bartel DP, Blelloch R;
RT "Mouse ES cells express endogenous shRNAs, siRNAs, and other
RT Microprocessor-independent, Dicer-dependent small RNAs";
RL Genes Dev. 22:2773-2785(2008).
XX
RN [2]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3837225; Mir1981.
DR ENTREZGENE; 100316821; Mir1981.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..24
FT /accession="MIMAT0009458"
FT /product="mmu-miR-1981-5p"
FT /evidence=experimental
FT /experiment="Illumina [1,3]"
FT miRNA 60..80
FT /accession="MIMAT0017351"
FT /product="mmu-miR-1981-3p"
FT /evidence=experimental
FT /experiment="454 [2], Illumina [3]"
XX
SQ Sequence 82 BP; 15 A; 20 C; 24 G; 0 T; 23 other;
guaaaggcug ggcuuagacg uggccuuugg guguggaaug cacuuccguu uguaaccgcc 60
aucuaacccu ggccuuugac ag 82
//
ID bmo-mir-190 standard; RNA; BMO; 90 BP.
XX
AC MI0009996;
XX
DE Bombyx mori miR-190 stem-loop
XX
RN [1]
RX PUBMED; 18714353.
RA Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J;
RT "The silkworm (Bombyx mori) microRNAs and their expressions in multiple
RT developmental stages";
RL PLoS One. 3:e2997(2008).
XX
RN [2]
RX PUBMED; 18977439.
RA Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y;
RT "Identification of conserved microRNAs in Bombyx mori (silkworm) and
RT regulation of fibroin L chain production by microRNAs in heterologous
RT system";
RL Insect Biochem Mol Biol. 38:1066-1071(2008).
XX
RN [3]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0009153"
FT /product="bmo-miR-190-5p"
FT /evidence=experimental
FT /experiment="RT-PCR [2], Illumina [3]"
FT /similarity="MI0005808"
FT miRNA 55..78
FT /accession="MIMAT0015287"
FT /product="bmo-miR-190-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 90 BP; 18 A; 21 C; 23 G; 0 T; 28 other;
gagccgcgcg ucgucgagau auguuugaua uucuugguug uuuguuuugg aucacccggg 60
aaucaaacau auuacucuac gaccgcggcc 90
//
ID bmo-mir-927 standard; RNA; BMO; 88 BP.
XX
AC MI0010000;
XX
DE Bombyx mori miR-927 stem-loop
XX
RN [1]
RX PUBMED; 18714353.
RA Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J;
RT "The silkworm (Bombyx mori) microRNAs and their expressions in multiple
RT developmental stages";
RL PLoS One. 3:e2997(2008).
XX
RN [2]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0009157"
FT /product="bmo-miR-927-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0005843"
FT miRNA 54..72
FT /accession="MIMAT0015288"
FT /product="bmo-miR-927-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 88 BP; 23 A; 19 C; 18 G; 0 T; 28 other;
ugcagccuuu uugcuuuaga auuccuacgc uuuaccguug ccaaguaguu gggcaaagcg 60
uuuggauucu aaaacgaaau aacugcca 88
//
ID bmo-mir-iab-4 standard; RNA; BMO; 88 BP.
XX
AC MI0010005;
XX
DE Bombyx mori miR-iab-4 stem-loop
XX
RN [1]
RX PUBMED; 18714353.
RA Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J;
RT "The silkworm (Bombyx mori) microRNAs and their expressions in multiple
RT developmental stages";
RL PLoS One. 3:e2997(2008).
XX
RN [2]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0009162"
FT /product="bmo-miR-iab-4-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000432"
FT miRNA 53..76
FT /accession="MIMAT0009163"
FT /product="bmo-miR-iab-4-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
XX
SQ Sequence 88 BP; 21 A; 21 C; 20 G; 0 T; 26 other;
gcgucgccuu cuguacguau acugaaugua uccugagugc gcgauucuug uccgguauac 60
cuucaguaua cguaacagaa gaugacac 88
//
ID bmo-mir-278 standard; RNA; BMO; 87 BP.
XX
AC MI0010006;
XX
DE Bombyx mori miR-278 stem-loop
XX
RN [1]
RX PUBMED; 18714353.
RA Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J;
RT "The silkworm (Bombyx mori) microRNAs and their expressions in multiple
RT developmental stages";
RL PLoS One. 3:e2997(2008).
XX
RN [2]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0015291"
FT /product="bmo-miR-278-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 53..74
FT /accession="MIMAT0009164"
FT /product="bmo-miR-278-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
XX
SQ Sequence 87 BP; 16 A; 25 C; 24 G; 0 T; 22 other;
guaucaagug cuacgcccgg acgaacuucc cagcucggcc gacaaucagg ggucgguggg 60
aucuucgucc guuuguaucg cuuauac 87
//
ID nve-mir-100 standard; RNA; NVE; 84 BP.
XX
AC MI0010144;
XX
DE Nematostella vectensis miR-100 stem-loop
XX
RN [1]
RX PUBMED; 19196333.
RA Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S,
RA Peterson KJ;
RT "The deep evolution of metazoan microRNAs";
RL Evol Dev. 11:50-68(2009).
XX
RN [2]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [3]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0009605"
FT /product="nve-miR-100-5p"
FT /evidence=experimental
FT /experiment="454 [1-2], Illumina [3]"
FT miRNA 48..69
FT /accession="MIMAT0009606"
FT /product="nve-miR-100-3p"
FT /evidence=experimental
FT /experiment="454 [2], Illumina [3]"
XX
SQ Sequence 84 BP; 23 A; 22 C; 18 G; 0 T; 21 other;
uaaucgcaca guaucgaccc guagauccga acuuguggag uuucaccaca ggcucguuuc 60
uacggaucaa aacugcgucg aaau 84
//
ID aqu-mir-2014 standard; RNA; AQU; 150 BP.
XX
AC MI0010222;
XX
DE Amphimedon queenslandica miR-2014 stem-loop
XX
RN [1]
RX PUBMED; 19196333.
RA Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S,
RA Peterson KJ;
RT "The deep evolution of metazoan microRNAs";
RL Evol Dev. 11:50-68(2009).
XX
RN [2]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0009686"
FT /product="aqu-miR-2014-5p"
FT /evidence=experimental
FT /experiment="454 [2]"
FT miRNA 120..141
FT /accession="MIMAT0009687"
FT /product="aqu-miR-2014-3p"
FT /evidence=experimental
FT /experiment="454 [1-2]"
XX
SQ Sequence 150 BP; 32 A; 36 C; 52 G; 0 T; 30 other;
ugugguauug uaggucgggc cuggggggca gguggaagga auggcggcca aaagcggcaa 60
gggagaguga uggcugcacu gcacuaguuc ucuuuugcug cugcgggcug ccaaccuccu 120
gccaaacaag uccgaucuac aagaccacgg 150
//
ID aqu-mir-2015 standard; RNA; AQU; 110 BP.
XX
AC MI0010223;
XX
DE Amphimedon queenslandica miR-2015 stem-loop
XX
RN [1]
RX PUBMED; 19196333.
RA Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S,
RA Peterson KJ;
RT "The deep evolution of metazoan microRNAs";
RL Evol Dev. 11:50-68(2009).
XX
RN [2]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0009688"
FT /product="aqu-miR-2015-5p"
FT /evidence=experimental
FT /experiment="454 [1-2]"
FT miRNA 73..93
FT /accession="MIMAT0009689"
FT /product="aqu-miR-2015-3p"
FT /evidence=experimental
FT /experiment="454 [2]"
XX
SQ Sequence 110 BP; 29 A; 20 C; 27 G; 0 T; 34 other;
ucucaugaug uauugucaug uauuguggag gggagagacu uuaaggagua gcuuuacugu 60
cuccaugagc ucaccucucc aucaugcaug acaaaacuag ugagaugaug 110
//
ID aqu-mir-2016 standard; RNA; AQU; 116 BP.
XX
AC MI0010224;
XX
DE Amphimedon queenslandica miR-2016 stem-loop
XX
RN [1]
RX PUBMED; 19196333.
RA Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S,
RA Peterson KJ;
RT "The deep evolution of metazoan microRNAs";
RL Evol Dev. 11:50-68(2009).
XX
RN [2]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..24
FT /accession="MIMAT0009690"
FT /product="aqu-miR-2016-5p"
FT /evidence=experimental
FT /experiment="454 [1-2]"
FT miRNA 93..114
FT /accession="MIMAT0009691"
FT /product="aqu-miR-2016-3p"
FT /evidence=experimental
FT /experiment="454 [2]"
XX
SQ Sequence 116 BP; 33 A; 19 C; 25 G; 0 T; 39 other;
uguagauugg gcuuggucgg cagaugauua aaagagauua aguuuuuguc cuuuuucaaa 60
agaagacacu agcuugaugc aacucuuaaa ucugcugucc agucuuaauc uacagg 116
//
ID aqu-mir-2017 standard; RNA; AQU; 115 BP.
XX
AC MI0010225;
XX
DE Amphimedon queenslandica miR-2017 stem-loop
XX
RN [1]
RX PUBMED; 19196333.
RA Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S,
RA Peterson KJ;
RT "The deep evolution of metazoan microRNAs";
RL Evol Dev. 11:50-68(2009).
XX
RN [2]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0009692"
FT /product="aqu-miR-2017-5p"
FT /evidence=experimental
FT /experiment="454 [2]"
FT miRNA 77..98
FT /accession="MIMAT0009693"
FT /product="aqu-miR-2017-3p"
FT /evidence=experimental
FT /experiment="454 [1-2]"
XX
SQ Sequence 115 BP; 31 A; 23 C; 29 G; 0 T; 32 other;
uggaugaggg guugaguaca cgggguaugg guagugcuuc uagcaaggau uauaaucaua 60
aaguccauuu uagcacuacc ugugcaccug ugugcccaaa ccuauccaua ucgaa 115
//
ID aqu-mir-2018 standard; RNA; AQU; 141 BP.
XX
AC MI0010226;
XX
DE Amphimedon queenslandica miR-2018 stem-loop
XX
RN [1]
RX PUBMED; 19196333.
RA Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S,
RA Peterson KJ;
RT "The deep evolution of metazoan microRNAs";
RL Evol Dev. 11:50-68(2009).
XX
RN [2]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0009694"
FT /product="aqu-miR-2018-5p"
FT /evidence=experimental
FT /experiment="454 [1-2]"
FT miRNA 115..136
FT /accession="MIMAT0009695"
FT /product="aqu-miR-2018-3p"
FT /evidence=experimental
FT /experiment="454 [2]"
XX
SQ Sequence 141 BP; 32 A; 32 C; 43 G; 0 T; 34 other;
cagugugucg gagccggagg uuccggagaa agauaaaagc ccgugcaggc auuggaauga 60
cauaaaccgg uuguauuggu uucguuccau uguuuggugc aacggcuuag ccuccgggac 120
cuuggaccuc gacacacagu g 141
//
ID aqu-mir-2019 standard; RNA; AQU; 114 BP.
XX
AC MI0010227;
XX
DE Amphimedon queenslandica miR-2019 stem-loop
XX
RN [1]
RX PUBMED; 19196333.
RA Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S,
RA Peterson KJ;
RT "The deep evolution of metazoan microRNAs";
RL Evol Dev. 11:50-68(2009).
XX
RN [2]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0009696"
FT /product="aqu-miR-2019-5p"
FT /evidence=experimental
FT /experiment="454 [1-2]"
FT miRNA 92..113
FT /accession="MIMAT0009697"
FT /product="aqu-miR-2019-3p"
FT /evidence=experimental
FT /experiment="454 [2]"
XX
SQ Sequence 114 BP; 27 A; 31 C; 27 G; 0 T; 29 other;
cgauucaaag ugaucggguu gccgucugag cucuagcuag ccauacccag gccuuguuaa 60
cuuaaccagu ccuagagaag gcucuggcuc acacgguagc uugcucacuu agaa 114
//
ID nve-mir-2022 standard; RNA; NVE; 75 BP.
XX
AC MI0010263;
XX
DE Nematostella vectensis miR-2022 stem-loop
XX
RN [1]
RX PUBMED; 19196333.
RA Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S,
RA Peterson KJ;
RT "The deep evolution of metazoan microRNAs";
RL Evol Dev. 11:50-68(2009).
XX
RN [2]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [3]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0032100"
FT /product="nve-miR-2022-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 46..68
FT /accession="MIMAT0009734"
FT /product="nve-miR-2022-3p"
FT /evidence=experimental
FT /experiment="454 [1-2]"
XX
SQ Sequence 75 BP; 15 A; 16 C; 17 G; 0 T; 27 other;
agaucgccug aaagucggga uaaaucaacu gucaaguggu ugucauuugc uaguugcuuu 60
ugucccgccu uuucu 75
//
ID aqu-mir-2021 standard; RNA; AQU; 155 BP.
XX
AC MI0010282;
XX
DE Amphimedon queenslandica miR-2021 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0009753"
FT /product="aqu-miR-2021-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 121..141
FT /accession="MIMAT0009754"
FT /product="aqu-miR-2021-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 155 BP; 36 A; 34 C; 44 G; 0 T; 41 other;
aguguuguug auguccaugg aauaucggca cccauccagu uaaaaccuuc aacgauccac 60
ucgugcagcu augggucccu agacuagcac caguggguga uugugucagg agguguguga 120
ugguggucgg uguuucgugg acaccaacaa ugcaa 155
//
ID nve-mir-2023 standard; RNA; NVE; 93 BP.
XX
AC MI0010283;
XX
DE Nematostella vectensis miR-2023 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0009755"
FT /product="nve-miR-2023-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 53..73
FT /accession="MIMAT0009756"
FT /product="nve-miR-2023-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 93 BP; 25 A; 16 C; 27 G; 0 T; 25 other;
gaguugcgug acauaccugu gucugccacc uguauuucua ucacgucaga ugaaagaagu 60
acaaguggua gggaagggug ugucgauuga caa 93
//
ID nve-mir-2024a-1 standard; RNA; NVE; 63 BP.
XX
AC MI0010284;
XX
DE Nematostella vectensis miR-2024a-1 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0009757"
FT /product="nve-miR-2024a-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 38..59
FT /accession="MIMAT0009758"
FT /product="nve-miR-2024a-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 63 BP; 20 A; 10 C; 14 G; 0 T; 19 other;
ugcuucaaaa uaucgguguu ggguaaaagg ucacauuuua cacaguaccg auauugugaa 60
gca 63
//
ID nve-mir-2025 standard; RNA; NVE; 95 BP.
XX
AC MI0010285;
XX
DE Nematostella vectensis miR-2025 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0009759"
FT /product="nve-miR-2025-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 51..72
FT /accession="MIMAT0009760"
FT /product="nve-miR-2025-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 95 BP; 27 A; 20 C; 19 G; 0 T; 29 other;
aacaauuagg ccacauacaa agcuuucgau ggcuagaaaa uccuuaguga uuuuuuagcc 60
cgcggaaguu guguugccug gccaauauua ccauu 95
//
ID nve-mir-2024b standard; RNA; NVE; 85 BP.
XX
AC MI0010286;
XX
DE Nematostella vectensis miR-2024b stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0009761"
FT /product="nve-miR-2024b-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 46..67
FT /accession="MIMAT0009762"
FT /product="nve-miR-2024b-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 85 BP; 27 A; 14 C; 18 G; 0 T; 26 other;
agugcuacug cuucaaaaua ucgguguugg guaaaagguc acauuuucaa caguaccgau 60
auugugaagc acguuugcaa auuaa 85
//
ID nve-mir-2024c standard; RNA; NVE; 58 BP.
XX
AC MI0010287;
XX
DE Nematostella vectensis miR-2024c stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0009763"
FT /product="nve-miR-2024c-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 35..56
FT /accession="MIMAT0009764"
FT /product="nve-miR-2024c-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 58 BP; 18 A; 11 C; 13 G; 0 T; 16 other;
uucagaauau uggugcuggg caaaagguca cauuuugcac aacaccaaua uucugagg 58
//
ID nve-mir-2024d standard; RNA; NVE; 87 BP.
XX
AC MI0010288;
XX
DE Nematostella vectensis miR-2024d stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0009765"
FT /product="nve-miR-2024d"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 87 BP; 24 A; 18 C; 19 G; 0 T; 26 other;
caucagguag acuugcuuca gaauauuggu gcugggcaaa aggucacauu uugcacaauu 60
ccaauauucu gaggcacuuc ugcugaa 87
//
ID nve-mir-2024e-1 standard; RNA; NVE; 94 BP.
XX
AC MI0010289;
XX
DE Nematostella vectensis miR-2024e-1 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0009766"
FT /product="nve-miR-2024e-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 52..73
FT /accession="MIMAT0009767"
FT /product="nve-miR-2024e-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 94 BP; 26 A; 20 C; 22 G; 0 T; 26 other;
acaucaggua gacuugcuuc agaguauugg cgcugggcaa aaggucacau uuugcacauu 60
accaauauuc ugaggcacuu cugcugaagg aacu 94
//
ID nve-mir-2024f standard; RNA; NVE; 110 BP.
XX
AC MI0010290;
XX
DE Nematostella vectensis miR-2024f stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0009768"
FT /product="nve-miR-2024f-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 54..75
FT /accession="MIMAT0009769"
FT /product="nve-miR-2024f-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 110 BP; 36 A; 20 C; 27 G; 0 T; 27 other;
aaagagcagg uagacuugcu ucagaauauu gguacugggc aaaaggucac guuuugcaca 60
ucaccaaugu ucugaggcac uucugcugaa ggaacuagga aauuacaaga 110
//
ID nve-mir-2026 standard; RNA; NVE; 79 BP.
XX
AC MI0010291;
XX
DE Nematostella vectensis miR-2026 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0009770"
FT /product="nve-miR-2026-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 46..66
FT /accession="MIMAT0009771"
FT /product="nve-miR-2026-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 79 BP; 19 A; 15 C; 21 G; 0 T; 24 other;
acuugugucc ccccguuuca aaugucuacu gauggaaguu gguuccauca guggguauuu 60
gaaguugaga gacgcagaa 79
//
ID nve-mir-2027 standard; RNA; NVE; 96 BP.
XX
AC MI0010292;
XX
DE Nematostella vectensis miR-2027 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0009772"
FT /product="nve-miR-2027-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 51..72
FT /accession="MIMAT0009773"
FT /product="nve-miR-2027-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 96 BP; 25 A; 17 C; 21 G; 0 T; 33 other;
aauccgagag ccuuaaggcu ugcuuguugg uaauuuugca ucuguugcac augcgauuuu 60
accaaaaugc aauucuuaug guucagugau caggaa 96
//
ID nve-mir-2024g-1 standard; RNA; NVE; 89 BP.
XX
AC MI0010293;
XX
DE Nematostella vectensis miR-2024g-1 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..42
FT /accession="MIMAT0009774"
FT /product="nve-miR-2024g-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 54..75
FT /accession="MIMAT0009775"
FT /product="nve-miR-2024g-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 89 BP; 29 A; 17 C; 18 G; 0 T; 25 other;
accaauaagu gcuacugcuu caaaauaucg guguugggua aaaggucacc uuuuaacaca 60
guaccgauau ugugaagcac guuugcaaa 89
//
ID nve-mir-2028 standard; RNA; NVE; 83 BP.
XX
AC MI0010294;
XX
DE Nematostella vectensis miR-2028 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0009776"
FT /product="nve-miR-2028-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 44..64
FT /accession="MIMAT0009777"
FT /product="nve-miR-2028-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 83 BP; 26 A; 14 C; 18 G; 0 T; 25 other;
aggacgaugg agucuuaaug uuccugcuug uuccuauaua uuaggaacua gcaggagcau 60
uaagauuaca gucgucaaua aac 83
//
ID nve-mir-2030 standard; RNA; NVE; 89 BP.
XX
AC MI0010296;
XX
DE Nematostella vectensis miR-2030 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0009780"
FT /product="nve-miR-2030-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 50..72
FT /accession="MIMAT0009781"
FT /product="nve-miR-2030-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 89 BP; 27 A; 16 C; 19 G; 0 T; 27 other;
acacccacag uauggccgua uagcauaaca uuguaagaga uuguaagaac cucuuuacau 60
uguugugcug uacggauaug cugaauagu 89
//
ID nve-mir-2031 standard; RNA; NVE; 77 BP.
XX
AC MI0010297;
XX
DE Nematostella vectensis miR-2031 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0009782"
FT /product="nve-miR-2031-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 43..65
FT /accession="MIMAT0009783"
FT /product="nve-miR-2031-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 77 BP; 25 A; 13 C; 14 G; 0 T; 25 other;
agaccaccua aaauacggca cucuauuuau gguacuuuua aguaccauaa auagagugcc 60
guauuuuagg ugguuaa 77
//
ID nve-mir-2032a standard; RNA; NVE; 91 BP.
XX
AC MI0010298;
XX
DE Nematostella vectensis miR-2032a stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..40
FT /accession="MIMAT0009784"
FT /product="nve-miR-2032a-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 52..71
FT /accession="MIMAT0009785"
FT /product="nve-miR-2032a-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 91 BP; 18 A; 21 C; 25 G; 0 T; 27 other;
ucgcgagcuc accguugcug ucgcugcgac aguuagcuag cauuuauugc gagguaacug 60
uugcagcauc caugacugug aggucaguau u 91
//
ID nve-mir-2032b-1 standard; RNA; NVE; 81 BP.
XX
AC MI0010299;
XX
DE Nematostella vectensis miR-2032b-1 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..38
FT /accession="MIMAT0009786"
FT /product="nve-miR-2032b-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 50..69
FT /accession="MIMAT0009787"
FT /product="nve-miR-2032b-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 81 BP; 17 A; 19 C; 23 G; 0 T; 22 other;
gcgagcucac cguugcuguc gcugcaacag uuagcuagca uuuauugcga gguaacuguu 60
gcagcaucca ugacugugag g 81
//
ID nve-mir-2034 standard; RNA; NVE; 96 BP.
XX
AC MI0010301;
XX
DE Nematostella vectensis miR-2034 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0009790"
FT /product="nve-miR-2034-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 55..75
FT /accession="MIMAT0009791"
FT /product="nve-miR-2034-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 96 BP; 36 A; 13 C; 20 G; 0 T; 27 other;
gugaaaagag uguaguuuua cugauguuuu uagaauuagc ccccuaaaug aagggcuaau 60
gcaaaaaaug ucagugcaaa ugcaugaaac uuacaa 96
//
ID nve-mir-2035-1 standard; RNA; NVE; 78 BP.
XX
AC MI0010302;
XX
DE Nematostella vectensis miR-2035-1 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..30
FT /accession="MIMAT0009792"
FT /product="nve-miR-2035-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 54..73
FT /accession="MIMAT0009793"
FT /product="nve-miR-2035-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 78 BP; 17 A; 14 C; 24 G; 0 T; 23 other;
guggcguauu acauggucug uuacaaggga ugaagugcuc gaguuucgag uucccuugug 60
acagcccaug ggagaauu 78
//
ID nve-mir-2036 standard; RNA; NVE; 94 BP.
XX
AC MI0010303;
XX
DE Nematostella vectensis miR-2036 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0009794"
FT /product="nve-miR-2036-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 53..75
FT /accession="MIMAT0009795"
FT /product="nve-miR-2036-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 94 BP; 28 A; 22 C; 23 G; 0 T; 21 other;
auaagagucg ugccaggacc cggugagaac guacaguaag cacuugacga uguauauugu 60
acgacucuca ucguauccug cacggcaaug aaca 94
//
ID nve-mir-2038 standard; RNA; NVE; 91 BP.
XX
AC MI0010305;
XX
DE Nematostella vectensis miR-2038 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..42
FT /accession="MIMAT0009798"
FT /product="nve-miR-2038-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 51..71
FT /accession="MIMAT0009799"
FT /product="nve-miR-2038-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 91 BP; 22 A; 25 C; 18 G; 0 T; 26 other;
aaccugauga gccuuagugu cacccugaug accuuagugu cacccugaug accuuaaugu 60
caccaugaug accuuagugu cacccugaug a 91
//
ID nve-mir-2040a-1 standard; RNA; NVE; 92 BP.
XX
AC MI0010307;
XX
DE Nematostella vectensis miR-2040a-1 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..43
FT /accession="MIMAT0009802"
FT /product="nve-miR-2040a-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 51..73
FT /accession="MIMAT0009803"
FT /product="nve-miR-2040a-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 92 BP; 16 A; 27 C; 23 G; 0 T; 26 other;
gaucgugaug ccuacaaccu ucgggucagc uacgacauga gcgcuccucg uuugucucgu 60
aacugcccug aagguagucc uggcgucuuu ac 92
//
ID nve-mir-2042 standard; RNA; NVE; 88 BP.
XX
AC MI0010309;
XX
DE Nematostella vectensis miR-2042 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0009806"
FT /product="nve-miR-2042-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 49..70
FT /accession="MIMAT0009807"
FT /product="nve-miR-2042-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 88 BP; 23 A; 19 C; 15 G; 0 T; 31 other;
uuuacaauga cgacacaccc uuauaaauca uccuugcacu acuuaugucg uacauugaug 60
auuuaugaag guguguugcu gacucugc 88
//
ID nve-mir-2043-1 standard; RNA; NVE; 89 BP.
XX
AC MI0010311;
XX
DE Nematostella vectensis miR-2043-1 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0009810"
FT /product="nve-miR-2043-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 50..71
FT /accession="MIMAT0009811"
FT /product="nve-miR-2043-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 89 BP; 26 A; 17 C; 15 G; 0 T; 31 other;
guaucugaua ucgaaucucu uauaucgccu uuugagguua uuuucuuaau acccucaaaa 60
gacgguauua gagauuacac agcuggaca 89
//
ID nve-mir-2044 standard; RNA; NVE; 78 BP.
XX
AC MI0010312;
XX
DE Nematostella vectensis miR-2044 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0009812"
FT /product="nve-miR-2044-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 44..65
FT /accession="MIMAT0009813"
FT /product="nve-miR-2044-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 78 BP; 26 A; 10 C; 14 G; 0 T; 28 other;
agguugaaug agcuuuauca agauaaaugc cauaaaaugu uuuuauggca uuuaucuuga 60
uaaagcucau ugguacca 78
//
ID nve-mir-2046 standard; RNA; NVE; 91 BP.
XX
AC MI0010314;
XX
DE Nematostella vectensis miR-2046 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..45
FT /accession="MIMAT0009816"
FT /product="nve-miR-2046-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 52..73
FT /accession="MIMAT0009817"
FT /product="nve-miR-2046-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 91 BP; 34 A; 13 C; 13 G; 0 T; 31 other;
agaguaaauu uuauggcauu acaucacuuc auagcuauuu acucuuaaga guaaauagcu 60
augaagugau acaaugccau aaaauuuuga c 91
//
ID nve-mir-2047 standard; RNA; NVE; 102 BP.
XX
AC MI0010315;
XX
DE Nematostella vectensis miR-2047 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..50
FT /accession="MIMAT0009818"
FT /product="nve-miR-2047-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 60..81
FT /accession="MIMAT0009819"
FT /product="nve-miR-2047-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 102 BP; 28 A; 22 C; 26 G; 0 T; 26 other;
auccgggagu aaauucguaa cugcucaauu cgccgagcag augucggaga guucaacugu 60
cagacaucug cucggcgaau ugagcaguua uuuugaccaa ga 102
//
ID nve-mir-2043-2 standard; RNA; NVE; 89 BP.
XX
AC MI0010319;
XX
DE Nematostella vectensis miR-2043-2 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0009810"
FT /product="nve-miR-2043-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 50..71
FT /accession="MIMAT0009827"
FT /product="nve-miR-2043-2-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 89 BP; 25 A; 17 C; 16 G; 0 T; 31 other;
guaucugaua ucgaaucucu uauaucgccu uuugagguua uuuucuuaau gcccucaaaa 60
gacgguauua gagauuacac agcuggaca 89
//
ID nve-mir-2051 standard; RNA; NVE; 94 BP.
XX
AC MI0010320;
XX
DE Nematostella vectensis miR-2051 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0009828"
FT /product="nve-miR-2051-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 55..73
FT /accession="MIMAT0009829"
FT /product="nve-miR-2051-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 94 BP; 24 A; 22 C; 20 G; 0 T; 28 other;
auguacgggc ccgccuauga aaauagaaaa gcuuccgguu uuuugacauc gcaauaccgg 60
agucuuuucu guguccauau ucgugaccag aauc 94
//
ID bta-mir-376b standard; RNA; BTA; 93 BP.
XX
AC MI0010444;
XX
DE Bos taurus miR-376b stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313394; MIR376B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..77
FT /accession="MIMAT0009945"
FT /product="bta-miR-376b"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0002466"
XX
SQ Sequence 93 BP; 28 A; 12 C; 16 G; 0 T; 37 other;
uucuuuggua uuuaaaaggu ggauauuccu ucuauguuua cgugauucau agauaaucau 60
agaggaaaau ccauguuuuc aguaucaaau gcu 93
//
ID bta-mir-376c standard; RNA; BTA; 86 BP.
XX
AC MI0010446;
XX
DE Bos taurus miR-376c stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313095; MIR376C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0009947"
FT /product="bta-miR-376c"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0003533"
XX
SQ Sequence 86 BP; 25 A; 9 C; 16 G; 0 T; 36 other;
uuugguauuu aaaaggugga uauuccuucu auguuuaugu uauuuguggu uaaacauaga 60
ggaaauucca cguuuucagu aucaaa 86
//
ID bta-mir-376a standard; RNA; BTA; 99 BP.
XX
AC MI0010457;
XX
DE Bos taurus miR-376a stem-loop
XX
RN [1]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313321; MIR376A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..81
FT /accession="MIMAT0009946"
FT /product="bta-miR-376a"
FT /evidence=not_experimental
FT /similarity="MI0003529"
XX
SQ Sequence 99 BP; 31 A; 16 C; 15 G; 0 T; 37 other;
aauccuucuu ugguauuuaa aagguagauu cuccuucuau gaguacauua uuuacgauua 60
aucauagagg aaaauccacg uuuucaguau caaaugcug 99
//
ID bta-mir-7-2 standard; RNA; BTA; 109 BP.
XX
AC MI0010462;
XX
DE Bos taurus miR-7-2 stem-loop
XX
RN [1]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [2]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313103; MIR7-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..46
FT /accession="MIMAT0003843"
FT /product="bta-miR-7"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 109 BP; 28 A; 20 C; 26 G; 0 T; 35 other;
uggauguugg ucuaguucug uguggaagac uagugauuuu guuguuuuua gauaacugaa 60
ucgacaacaa aucacagucu gccauauggc acaggccaug ccucuacag 109
//
ID bta-mir-1307 standard; RNA; BTA; 149 BP.
XX
AC MI0010474;
XX
DE Bos taurus miR-1307 stem-loop
XX
RN [1]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313109; MIR1307.
XX
FH Key Location/Qualifiers
FH
FT miRNA 80..101
FT /accession="MIMAT0009969"
FT /product="bta-miR-1307"
FT /evidence=not_experimental
XX
SQ Sequence 149 BP; 29 A; 42 C; 42 G; 0 T; 36 other;
caucaagagu cggcugaguc acugccacug ccuaccaauc ucgaccggac cucgaccggc 60
ucgucuauau ugccaaucga cucggcgugg cgucggucgu gguagauagg cggucauaca 120
gacgaguuuu caaguguugc ucuggugac 149
//
ID bta-mir-1185 standard; RNA; BTA; 86 BP.
XX
AC MI0010478;
XX
DE Bos taurus miR-1185 stem-loop
XX
RN [1]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [2]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313354; MIR1185.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0009973"
FT /product="bta-miR-1185"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 86 BP; 25 A; 12 C; 19 G; 0 T; 30 other;
uuugguacuu gaagagagga uacccuuugu auguucacuu uauuaauggc gaauauacag 60
agggagacuc uuauuugcgu aucaaa 86
//
ID bta-mir-1271 standard; RNA; BTA; 86 BP.
XX
AC MI0010480;
XX
DE Bos taurus miR-1271 stem-loop
XX
RN [1]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
DR ENTREZGENE; 100313112; MIR1271.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0009975"
FT /product="bta-miR-1271"
FT /evidence=not_experimental
XX
SQ Sequence 86 BP; 18 A; 20 C; 23 G; 0 T; 25 other;
cacccagauc agugcuuggc accuaguaag uacucaguau auacuuguug agugccugcu 60
augugccagg cauugugcug agggcu 86
//
ID bta-mir-181a-1 standard; RNA; BTA; 110 BP.
XX
AC MI0010484;
XX
DE Bos taurus miR-181a-1 stem-loop
XX
RN [1]
RX PUBMED; 18945293.
RA Strozzi F, Mazza R, Malinverni R, Williams JL;
RT "Annotation of 390 bovine miRNA genes by sequence similarity with other
RT species";
RL Anim Genet. 40:125(2009).
XX
RN [2]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100313401; MIR181A-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..47
FT /accession="MIMAT0003543"
FT /product="bta-miR-181a"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 110 BP; 30 A; 30 C; 22 G; 0 T; 28 other;
ugagcuccga gguugcuuca gugaacauuc aacgcugucg gugaguuugg aauuaaaaau 60
caaaaccauc gaccguugau uguacccuau ggccaaccac caucuccacc 110
//
ID osa-MIR396f standard; RNA; OSA; 176 BP.
XX
AC MI0010563;
XX
DE Oryza sativa miR396f stem-loop
XX
RN [1]
RX PUBMED; 19103661.
RA Xue LJ, Zhang JJ, Xue HW;
RT "Characterization and expression profiles of miRNAs in rice seeds";
RL Nucleic Acids Res. 37:916-930(2009).
XX
RN [2]
RX PUBMED; 19903869.
RA Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
RT "Rice MicroRNA effector complexes and targets";
RL Plant Cell. 21:3421-3435(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0010070"
FT /product="osa-miR396f-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 145..168
FT /accession="MIMAT0015292"
FT /product="osa-miR396f-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 176 BP; 41 A; 41 C; 38 G; 0 T; 56 other;
gccaugcucu ccacaggcuu ucuugaacug ugaacucgug ugugcaugcu ccucauauau 60
uguucuagau cccaugcaug augcauaucg aucgaucuga ucugaauuag gucaucgaug 120
cgcaucugga uccccaucuu guugauaguu caagaaaguc cuuggaaaac auggug 176
//
ID bmo-mir-965 standard; RNA; BMO; 104 BP.
XX
AC MI0010623;
XX
DE Bombyx mori miR-965 stem loop
XX
RN [1]
RA Griffiths-Jones S;
RT ";
RL Unpublished (2009).
XX
RN [2]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..47
FT /accession="MIMAT0015295"
FT /product="bmo-miR-965-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 63..84
FT /accession="MIMAT0010126"
FT /product="bmo-miR-965-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0005821"
XX
SQ Sequence 104 BP; 33 A; 19 C; 19 G; 0 T; 33 other;
auauaaaugg cugcauagcu aaacgggaga agcuauagcg cuauauguca auauuaaaau 60
cauaagcgua uagcuuuucc ccuugguuau gcaugcauau ucuc 104
//
ID bmo-mir-274 standard; RNA; BMO; 95 BP.
XX
AC MI0010624;
XX
DE Bombyx mori miR-274 stem loop
XX
RN [1]
RA Griffiths-Jones S;
RT ";
RL Unpublished (2009).
XX
RN [2]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..47
FT /accession="MIMAT0010127"
FT /product="bmo-miR-274-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000355"
FT miRNA 62..83
FT /accession="MIMAT0015296"
FT /product="bmo-miR-274-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 95 BP; 19 A; 18 C; 29 G; 0 T; 29 other;
ggcuguuguu aggcgaaguu gguuugugac cgucacuaac gggcaguguu aauacgguug 60
cucguuuugg cgaucgcaaa augaacucgc uugac 95
//
ID hsa-mir-2110 standard; RNA; HSA; 75 BP.
XX
AC MI0010629;
XX
DE Homo sapiens miR-2110 stem-loop
XX
RN [1]
RX PUBMED; 19144710.
RA Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G;
RT "Identification of novel Epstein-Barr virus microRNA genes from
RT nasopharyngeal carcinomas";
RL J Virol. 83:3333-3341(2009).
XX
DR HGNC; 37071; MIR2110.
DR ENTREZGENE; 100302224; MIR2110.
XX
CC Zhu et al. incorrectly referred to this sequence as mir-1309 in [1]. This
CC sequence is unrelated to MIR1309 in plants.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0010133"
FT /product="hsa-miR-2110"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 75 BP; 8 A; 21 C; 25 G; 0 T; 21 other;
cagggguuug gggaaacggc cgcugaguga ggcgucggcu guguuucuca ccgcggucuu 60
uuccucccac ucuug 75
//
ID hsa-mir-2114 standard; RNA; HSA; 80 BP.
XX
AC MI0010633;
XX
DE Homo sapiens miR-2114 stem-loop
XX
RN [1]
RX PUBMED; 19390579.
RA Wyman SK, Parkin RK, Mitchell PS, Fritz BR, O'Briant K, Godwin AK, Urban
RA N, Drescher CW, Knudsen BS, Tewari M;
RT "Repertoire of microRNAs in epithelial ovarian cancer as determined by
RT next generation sequencing of small RNA cDNA libraries";
RL PLoS One. 4:e5311(2009).
XX
RN [2]
RX PUBMED; 20224791.
RA Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain
RA MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM,
RA Gunaratne PH;
RT "Discovery of novel microRNAs in female reproductive tract using next
RT generation sequencing";
RL PLoS One. 5:e9637(2010).
XX
DR ENTREZGENE; 100313839; MIR2114.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0011156"
FT /product="hsa-miR-2114-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 49..69
FT /accession="MIMAT0011157"
FT /product="hsa-miR-2114-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 80 BP; 18 A; 24 C; 20 G; 0 T; 18 other;
ccuccaugcu ccuagucccu uccuugaagc ggucggauaa ucacaugacg agccucaagc 60
aagggacuuc aagcuggugg 80
//
ID hsa-mir-2115 standard; RNA; HSA; 100 BP.
XX
AC MI0010634;
XX
DE Homo sapiens miR-2115 stem-loop
XX
RN [1]
RX PUBMED; 19390579.
RA Wyman SK, Parkin RK, Mitchell PS, Fritz BR, O'Briant K, Godwin AK, Urban
RA N, Drescher CW, Knudsen BS, Tewari M;
RT "Repertoire of microRNAs in epithelial ovarian cancer as determined by
RT next generation sequencing of small RNA cDNA libraries";
RL PLoS One. 4:e5311(2009).
XX
RN [2]
RX PUBMED; 20224791.
RA Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain
RA MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM,
RA Gunaratne PH;
RT "Discovery of novel microRNAs in female reproductive tract using next
RT generation sequencing";
RL PLoS One. 5:e9637(2010).
XX
DR ENTREZGENE; 100313840; MIR2115.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0011158"
FT /product="hsa-miR-2115-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 58..79
FT /accession="MIMAT0011159"
FT /product="hsa-miR-2115-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 100 BP; 29 A; 23 C; 21 G; 0 T; 27 other;
acugucaucc cacugcuucc agcuuccaug acuccugaug gaggaaucac augaauucau 60
cagaauucau ggaggcuaga agcaguauga ggaucauuua 100
//
ID hsa-mir-2116 standard; RNA; HSA; 80 BP.
XX
AC MI0010635;
XX
DE Homo sapiens miR-2116 stem-loop
XX
RN [1]
RX PUBMED; 19390579.
RA Wyman SK, Parkin RK, Mitchell PS, Fritz BR, O'Briant K, Godwin AK, Urban
RA N, Drescher CW, Knudsen BS, Tewari M;
RT "Repertoire of microRNAs in epithelial ovarian cancer as determined by
RT next generation sequencing of small RNA cDNA libraries";
RL PLoS One. 4:e5311(2009).
XX
DR ENTREZGENE; 100313886; MIR2116.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0011160"
FT /product="hsa-miR-2116-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 51..71
FT /accession="MIMAT0011161"
FT /product="hsa-miR-2116-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 80 BP; 21 A; 22 C; 20 G; 0 T; 17 other;
gaccuaggcu agggguucuu agcauaggag gucuucccau gcuaagaagu ccucccaugc 60
caagaacucc cagacuagga 80
//
ID ssc-mir-30a standard; RNA; SSC; 107 BP.
XX
AC MI0010688;
XX
DE Sus scrofa miR-30a stem-loop
XX
RN [1]
RX PUBMED; 19196471.
RA Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva
RA U, Zhang W, Sunkar R;
RT "Cloning, characterization and expression analysis of porcine microRNAs";
RL BMC Genomics. 10:65(2009).
XX
RN [2]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [3]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [4]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [5]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316587; MIR30A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0010193"
FT /product="ssc-miR-30a-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2,4-5], cloned [3]"
FT miRNA 62..83
FT /accession="MIMAT0015300"
FT /product="ssc-miR-30a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2,4-5]"
XX
SQ Sequence 107 BP; 21 A; 31 C; 33 G; 0 T; 22 other;
ucccugcgac agugagcggc uguaaacauc cucgacugga agcugugagg cugaagacgg 60
gcuuucaguc ggauguuugc agccgccgac ugccucccgc aucagga 107
//
ID gga-mir-2131 standard; RNA; GGA; 89 BP.
XX
AC MI0010736;
XX
DE Gallus gallus miR-2131 stem-loop
XX
RN [1]
RX PUBMED; 19328789.
RA Rathjen T, Pais H, Sweetman D, Moulton V, Munsterberg A, Dalmay T;
RT "High throughput sequencing of microRNAs in chicken somites";
RL FEBS Lett. 583:1422-1426(2009).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315939; MIR2131.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..37
FT /accession="MIMAT0011207"
FT /product="gga-miR-2131-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2], Northern [1]"
FT miRNA 58..78
FT /accession="MIMAT0026920"
FT /product="gga-miR-2131-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 89 BP; 18 A; 18 C; 26 G; 0 T; 27 other;
ucucguggcu uccaugcaga agugcacgga aacagcuguu ugcuaucgaa aaguuggcug 60
uuacuguucu ucugauggag gcugcugga 89
//
ID dre-mir-2184 standard; RNA; DRE; 110 BP.
XX
AC MI0010834;
XX
DE Danio rerio miR-2184 stem-loop
XX
RN [1]
RX PUBMED; 19397817.
RA Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL,
RA Moura GR, Santos MA;
RT "Parallel DNA pyrosequencing unveils new zebrafish microRNAs";
RL BMC Genomics. 10:195(2009).
XX
DR ENTREZGENE; 100628795; mir2184.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0011288"
FT /product="dre-miR-2184"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 110 BP; 31 A; 21 C; 24 G; 0 T; 34 other;
cugaaugaug cccuaagccc uaaacaguaa gaguuuaugu gcugagguua aaaauucagc 60
acauugucuc uuacuuguag ggaaaagggu uucuaucggc cugucacauu 110
//
ID dre-mir-1388 standard; RNA; DRE; 103 BP.
XX
AC MI0010837;
XX
DE Danio rerio miR-1388 stem-loop
XX
RN [1]
RX PUBMED; 19397817.
RA Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL,
RA Moura GR, Santos MA;
RT "Parallel DNA pyrosequencing unveils new zebrafish microRNAs";
RL BMC Genomics. 10:195(2009).
XX
DR ENTREZGENE; 100628796; mir1388.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0011292"
FT /product="dre-miR-1388-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 60..81
FT /accession="MIMAT0011293"
FT /product="dre-miR-1388-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 103 BP; 25 A; 25 C; 25 G; 0 T; 28 other;
ugauggauga gcagugcuuu ccaggacugu ccaaccugag aaugcuugag uuuuggucaa 60
ucucagguuc gucagcccau gaaaaacugu cucgcucaaa gcc 103
//
ID dre-mir-455-2 standard; RNA; DRE; 105 BP.
XX
AC MI0010844;
XX
DE Danio rerio miR-455b-2 stem-loop
XX
RN [1]
RX PUBMED; 19397817.
RA Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL,
RA Moura GR, Santos MA;
RT "Parallel DNA pyrosequencing unveils new zebrafish microRNAs";
RL BMC Genomics. 10:195(2009).
XX
DR ENTREZGENE; 100628800; mir455b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0011302"
FT /product="dre-miR-455-2-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 60..82
FT /accession="MIMAT0031993"
FT /product="dre-miR-455-3p"
FT /evidence=not_experimental
XX
SQ Sequence 105 BP; 25 A; 27 C; 25 G; 0 T; 28 other;
aucguuguuc ccugaaguga ggguaugugc ccuuggacua cauuguggag gccagcacca 60
ugcaguccau gggcauauac acuuacuuca uggccuacau caaca 105
//
ID dre-mir-222b standard; RNA; DRE; 97 BP.
XX
AC MI0010845;
XX
DE Danio rerio miR-222b stem-loop
XX
RN [1]
RX PUBMED; 19397817.
RA Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL,
RA Moura GR, Santos MA;
RT "Parallel DNA pyrosequencing unveils new zebrafish microRNAs";
RL BMC Genomics. 10:195(2009).
XX
DR ENTREZGENE; 100628946; mir222b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 55..77
FT /accession="MIMAT0011303"
FT /product="dre-miR-222b"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 97 BP; 25 A; 21 C; 28 G; 0 T; 23 other;
gacgugaucu gcagacucag uacucggugu agagucugug ugauucagaa gagcagcuac 60
aucugaauac ugggucagug gagacgucac acgcuac 97
//
ID dre-mir-126b standard; RNA; DRE; 103 BP.
XX
AC MI0010848;
XX
DE Danio rerio miR-126b stem-loop
XX
RN [1]
RX PUBMED; 19397817.
RA Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL,
RA Moura GR, Santos MA;
RT "Parallel DNA pyrosequencing unveils new zebrafish microRNAs";
RL BMC Genomics. 10:195(2009).
XX
DR ENTREZGENE; 100628803; mir126b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0011307"
FT /product="dre-miR-126b-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 60..81
FT /accession="MIMAT0011306"
FT /product="dre-miR-126b-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 103 BP; 24 A; 27 C; 22 G; 0 T; 30 other;
gagucuuacc ggccucacgg uucauuauua cuuuugguac gcgcuaugcc acucucaacu 60
cguaccguga guaauagugc acugugacug gugaacacaa cua 103
//
ID dre-mir-2188 standard; RNA; DRE; 104 BP.
XX
AC MI0010850;
XX
DE Danio rerio miR-2188 stem-loop
XX
RN [1]
RX PUBMED; 19397817.
RA Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL,
RA Moura GR, Santos MA;
RT "Parallel DNA pyrosequencing unveils new zebrafish microRNAs";
RL BMC Genomics. 10:195(2009).
XX
DR ENTREZGENE; 100310776; mir2188.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0011309"
FT /product="dre-miR-2188-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 62..82
FT /accession="MIMAT0011310"
FT /product="dre-miR-2188-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 104 BP; 27 A; 27 C; 27 G; 0 T; 23 other;
ggacaauauc agcaauguga gaaaggucca accucacaug uccugugagg cugaaggaag 60
gcugugugag guuagaccua ucccacacgg cccguauucu uccc 104
//
ID dre-mir-196d standard; RNA; DRE; 72 BP.
XX
AC MI0010853;
XX
DE Danio rerio miR-196d stem-loop
XX
RN [1]
RX PUBMED; 19397817.
RA Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL,
RA Moura GR, Santos MA;
RT "Parallel DNA pyrosequencing unveils new zebrafish microRNAs";
RL BMC Genomics. 10:195(2009).
XX
DR ENTREZGENE; 100628806; mir196d.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0011313"
FT /product="dre-miR-196d"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 72 BP; 16 A; 13 C; 14 G; 0 T; 29 other;
agugauuuag guaguuuuau guuguugggc ucuauuuuau auccccgcaa cacgaaacug 60
ucuuaauugc cu 72
//
ID cel-mir-2208b standard; RNA; CEL; 61 BP.
XX
AC MI0010957;
XX
DE Caenorhabditis elegans miR-2208b stem-loop
XX
RN [1]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..23
FT /accession="MIMAT0011429"
FT /product="cel-miR-2208b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 40..61
FT /accession="MIMAT0011430"
FT /product="cel-miR-2208b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 61 BP; 20 A; 13 C; 12 G; 0 T; 16 other;
aaguguaccc ggaucugaua uccuaucacc aaaaagagga ugcagauuuu gguacacuuc 60
a 61
//
ID cel-mir-1832b standard; RNA; CEL; 67 BP.
XX
AC MI0010967;
XX
DE Caenorhabditis elegans miR-1832b stem-loop
XX
RN [1]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..23
FT /accession="MIMAT0011449"
FT /product="cel-miR-1832b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 45..67
FT /accession="MIMAT0011450"
FT /product="cel-miR-1832b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 67 BP; 17 A; 18 C; 18 G; 0 T; 14 other;
cagcgaaucg cucggcccac uuuugugaac caaucagcgu caaaaguggg cagagcgauu 60
cgcugau 67
//
ID hsa-mir-2276 standard; RNA; HSA; 89 BP.
XX
AC MI0011282;
XX
DE Homo sapiens miR-2276 stem-loop
XX
RN [1]
RX PUBMED; 19508715.
RA Nygaard S, Jacobsen A, Lindow M, Eriksen J, Balslev E, Flyger H, Tolstrup
RA N, Moller S, Krogh A, Litman T;
RT "Identification and analysis of miRNAs in human breast cancer and teratoma
RT samples using deep sequencing";
RL BMC Med Genomics. 2:35(2009).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100313842; MIR2276.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0026921"
FT /product="hsa-miR-2276-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 54..75
FT /accession="MIMAT0011775"
FT /product="hsa-miR-2276-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 89 BP; 14 A; 26 C; 25 G; 0 T; 24 other;
guguucuucc aguccgcccu cugucaccuu gcagacggcu uucucuccga augucugcaa 60
gugucagagg cgaggagugg cagcugcau 89
//
ID hsa-mir-2277 standard; RNA; HSA; 93 BP.
XX
AC MI0011284;
XX
DE Homo sapiens miR-2277 stem-loop
XX
RN [1]
RX PUBMED; 19508715.
RA Nygaard S, Jacobsen A, Lindow M, Eriksen J, Balslev E, Flyger H, Tolstrup
RA N, Moller S, Krogh A, Litman T;
RT "Identification and analysis of miRNAs in human breast cancer and teratoma
RT samples using deep sequencing";
RL BMC Med Genomics. 2:35(2009).
XX
RN [2]
RX PUBMED; 20224791.
RA Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain
RA MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM,
RA Gunaratne PH;
RT "Discovery of novel microRNAs in female reproductive tract using next
RT generation sequencing";
RL PLoS One. 5:e9637(2010).
XX
DR ENTREZGENE; 100313887; MIR2277.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..41
FT /accession="MIMAT0017352"
FT /product="hsa-miR-2277-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 59..79
FT /accession="MIMAT0011777"
FT /product="hsa-miR-2277-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 93 BP; 12 A; 32 C; 33 G; 0 T; 16 other;
gugcuuccug cgggcugagc gcgggcugag cgcugccagu cagcgcucac auuaaggcug 60
acagcgcccu gccuggcucg gccggcgaag cuc 93
//
ID dme-mir-2279 standard; RNA; DME; 113 BP.
XX
AC MI0011289;
XX
DE Drosophila melanogaster miR-2279 stem-loop
XX
RN [1]
RX PUBMED; 19541914.
RA Lau NC, Robine N, Martin R, Chung WJ, Niki Y, Berezikov E, Lai EC;
RT "Abundant primary piRNAs, endo-siRNAs, and microRNAs in a Drosophila ovary
RT cell line";
RL Genome Res. 19:1776-1785(2009).
XX
RN [2]
RX PUBMED; 20037610.
RA Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC;
RT "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila";
RL Nat Genet. 42:6-9(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..52
FT /accession="MIMAT0011784"
FT /product="dme-miR-2279-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 67..88
FT /accession="MIMAT0011785"
FT /product="dme-miR-2279-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 113 BP; 41 A; 12 C; 20 G; 0 T; 40 other;
cgggagagga uuaugaaaga caauuugaaa uuaaauaucu gugugugaaa uuauuuaaaa 60
gauuaauuuc acgcgaagau auuuauuuuu acauuugucc cuauaauaac cgg 113
//
ID bta-mir-2299 standard; RNA; BTA; 79 BP.
XX
AC MI0011309;
XX
DE Bos taurus miR-2299 stem-loop
XX
RN [1]
RX PUBMED; 19633723.
RA Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ;
RT "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed
RT upon viral infection";
RL PLoS One. 4:e6349(2009).
XX
RN [2]
RX PUBMED; 21912509.
RA Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao
RA Y, Hou M, Zhong J;
RT "Solexa sequencing of novel and differentially expressed microRNAs in
RT testicular and ovarian tissues in Holstein cattle";
RL Int J Biol Sci. 7:1016-1026(2011).
XX
DR ENTREZGENE; 100313404; MIR2299.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0011807"
FT /product="bta-miR-2299-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 50..70
FT /accession="MIMAT0011808"
FT /product="bta-miR-2299-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
XX
SQ Sequence 79 BP; 17 A; 14 C; 23 G; 0 T; 25 other;
uaacugaaca cacuggauuc auuucucuga aaguggauuu uguggucugu ccggggaaug 60
gauccagcgu gaucgguug 79
//
ID bta-mir-2284t standard; RNA; BTA; 73 BP.
XX
AC MI0011331;
XX
DE Bos taurus miR-2284t stem-loop
XX
RN [1]
RX PUBMED; 19633723.
RA Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ;
RT "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed
RT upon viral infection";
RL PLoS One. 4:e6349(2009).
XX
RN [2]
RX PUBMED; 21912509.
RA Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao
RA Y, Hou M, Zhong J;
RT "Solexa sequencing of novel and differentially expressed microRNAs in
RT testicular and ovarian tissues in Holstein cattle";
RL Int J Biol Sci. 7:1016-1026(2011).
XX
DR ENTREZGENE; 100313408; MIR2284T.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..28
FT /accession="MIMAT0011831"
FT /product="bta-miR-2284t-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 48..69
FT /accession="MIMAT0011832"
FT /product="bta-miR-2284t-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
XX
SQ Sequence 73 BP; 22 A; 16 C; 14 G; 0 T; 21 other;
guuggccgaa acauucacuc ggguuuuucc auagcaucuu aacagaaaaa cucgaaugaa 60
uguuuuggcc aac 73
//
ID bta-mir-2320 standard; RNA; BTA; 75 BP.
XX
AC MI0011342;
XX
DE Bos taurus miR-2320 stem-loop
XX
RN [1]
RX PUBMED; 19633723.
RA Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ;
RT "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed
RT upon viral infection";
RL PLoS One. 4:e6349(2009).
XX
DR ENTREZGENE; 100313139; MIR2320.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0011844"
FT /product="bta-miR-2320-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 48..69
FT /accession="MIMAT0011845"
FT /product="bta-miR-2320-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 75 BP; 9 A; 20 C; 27 G; 0 T; 19 other;
uguccccaug gcacaggguc cagcugucgg ccgugauacc cgaugggucg augauggucc 60
cuguguuuug gggcg 75
//
ID bta-mir-2388 standard; RNA; BTA; 79 BP.
XX
AC MI0011428;
XX
DE Bos taurus miR-2388 stem-loop
XX
RN [1]
RX PUBMED; 19633723.
RA Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ;
RT "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed
RT upon viral infection";
RL PLoS One. 4:e6349(2009).
XX
DR ENTREZGENE; 100313184; MIR2388.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..34
FT /accession="MIMAT0011940"
FT /product="bta-miR-2388-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 50..70
FT /accession="MIMAT0011941"
FT /product="bta-miR-2388-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 79 BP; 18 A; 19 C; 24 G; 0 T; 18 other;
cauaaggagu cagcucccgu cuccucugug cugagucaca aggaucgcag cucgaggaag 60
cuggagauga cuugugaug 79
//
ID bta-mir-2431 standard; RNA; BTA; 68 BP.
XX
AC MI0011481;
XX
DE Bos taurus miR-2431 stem-loop
XX
RN [1]
RX PUBMED; 19633723.
RA Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ;
RT "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed
RT upon viral infection";
RL PLoS One. 4:e6349(2009).
XX
DR ENTREZGENE; 100313212; MIR2431.
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..24
FT /accession="MIMAT0012001"
FT /product="bta-miR-2431-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 45..67
FT /accession="MIMAT0012002"
FT /product="bta-miR-2431-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 68 BP; 17 A; 16 C; 17 G; 0 T; 18 other;
uucaggucau auaagugugg aguuggcuag acuacuggua augacacccc cacuugcaug 60
acccugag 68
//
ID bta-mir-2448 standard; RNA; BTA; 73 BP.
XX
AC MI0011502;
XX
DE Bos taurus miR-2448 stem-loop
XX
RN [1]
RX PUBMED; 19633723.
RA Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ;
RT "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed
RT upon viral infection";
RL PLoS One. 4:e6349(2009).
XX
RN [2]
RX PUBMED; 21912509.
RA Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao
RA Y, Hou M, Zhong J;
RT "Solexa sequencing of novel and differentially expressed microRNAs in
RT testicular and ovarian tissues in Holstein cattle";
RL Int J Biol Sci. 7:1016-1026(2011).
XX
DR ENTREZGENE; 100313440; MIR2448.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0012025"
FT /product="bta-miR-2448-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 49..70
FT /accession="MIMAT0012026"
FT /product="bta-miR-2448-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
XX
SQ Sequence 73 BP; 19 A; 14 C; 20 G; 0 T; 20 other;
ugcaccugcg gauacaacca aacacgguug gagaauauuu cacaaucugu gguugauugg 60
auccgugggu gua 73
//
ID bta-mir-2454 standard; RNA; BTA; 72 BP.
XX
AC MI0011511;
XX
DE Bos taurus miR-2454 stem-loop
XX
RN [1]
RX PUBMED; 19633723.
RA Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ;
RT "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed
RT upon viral infection";
RL PLoS One. 4:e6349(2009).
XX
DR ENTREZGENE; 100313227; MIR2454.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0012035"
FT /product="bta-miR-2454-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 45..64
FT /accession="MIMAT0012036"
FT /product="bta-miR-2454-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 72 BP; 5 A; 26 C; 26 G; 0 T; 15 other;
cccugugacu gggggcugcc aggcaggagg cguggcuccu ggugucuccu cuggccgcuc 60
uccuccccag gg 72
//
ID bta-mir-2483 standard; RNA; BTA; 80 BP.
XX
AC MI0011545;
XX
DE Bos taurus miR-2483 stem-loop
XX
RN [1]
RX PUBMED; 19633723.
RA Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ;
RT "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed
RT upon viral infection";
RL PLoS One. 4:e6349(2009).
XX
RN [2]
RX PUBMED; 21912509.
RA Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao
RA Y, Hou M, Zhong J;
RT "Solexa sequencing of novel and differentially expressed microRNAs in
RT testicular and ovarian tissues in Holstein cattle";
RL Int J Biol Sci. 7:1016-1026(2011).
XX
DR ENTREZGENE; 100313245; MIR2483.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0012075"
FT /product="bta-miR-2483-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 48..69
FT /accession="MIMAT0012076"
FT /product="bta-miR-2483-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
XX
SQ Sequence 80 BP; 23 A; 13 C; 19 G; 0 T; 25 other;
gagugaaaag uuccgucaac cauccagcug uuugagguga ugcaaacaaa caucugguug 60
guugagagaa uuuuuuacuu 80
//
ID dme-mir-2494 standard; RNA; DME; 117 BP.
XX
AC MI0011583;
XX
DE Drosophila melanogaster miR-2494 stem-loop
XX
RN [1]
RX PUBMED; 20037610.
RA Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC;
RT "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila";
RL Nat Genet. 42:6-9(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0012202"
FT /product="dme-miR-2494-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 71..94
FT /accession="MIMAT0012203"
FT /product="dme-miR-2494-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 117 BP; 33 A; 29 C; 27 G; 0 T; 28 other;
uccaucuucc gaccggcgau caguaagugc accagauugg gaauaaccuu caaaagcugc 60
aacuuaaaua uucccaguaa uguccacuua caaggagccc cugguuggau gggugga 117
//
ID dme-mir-2498 standard; RNA; DME; 112 BP.
XX
AC MI0011587;
XX
DE Drosophila melanogaster miR-2498 stem-loop
XX
RN [1]
RX PUBMED; 20037610.
RA Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC;
RT "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila";
RL Nat Genet. 42:6-9(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..52
FT /accession="MIMAT0012210"
FT /product="dme-miR-2498-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 64..86
FT /accession="MIMAT0012211"
FT /product="dme-miR-2498-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 112 BP; 33 A; 22 C; 14 G; 0 T; 43 other;
cacauuugcc auaaucuccu uaaaauagua aaggcuguua ugcuuauuuu uguguuuuuu 60
acaaaacugg cauucccguc uuacuuauuu ucagaaaacu uacaccaaag ug 112
//
ID bmo-mir-9c standard; RNA; BMO; 108 BP.
XX
AC MI0012193;
XX
DE Bombyx mori miR-9c stem-loop
XX
RN [1]
RX PUBMED; 19699294.
RA Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J;
RT "A discovery of novel microRNAs in the silkworm (Bombyx mori) genome";
RL Genomics. 94:438-444(2009).
XX
RN [2]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..44
FT /accession="MIMAT0015302"
FT /product="bmo-miR-9c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 61..82
FT /accession="MIMAT0012621"
FT /product="bmo-miR-9c-3p"
FT /evidence=experimental
FT /experiment="cloned [1], RT-PCR [1], Illumina [2]"
XX
SQ Sequence 108 BP; 17 A; 30 C; 36 G; 0 T; 25 other;
cagcgcgccg agggucgcgg gccgucucuu ugguauccua gcuguaggcg ugcgcggccc 60
uaaaguuaug guaccgaagu uacggcucgu gacguaucag ucgacguc 108
//
ID bmo-mir-306a standard; RNA; BMO; 108 BP.
XX
AC MI0012201;
XX
DE Bombyx mori miR-306a stem-loop
XX
RN [1]
RX PUBMED; 19699294.
RA Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J;
RT "A discovery of novel microRNAs in the silkworm (Bombyx mori) genome";
RL Genomics. 94:438-444(2009).
XX
RN [2]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
RN [3]
RX PUBMED; 20229201.
RA Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu
RA S, Yu J;
RT "Novel microRNAs in silkworm (Bombyx mori)";
RL Funct Integr Genomics. 10:405-415(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..49
FT /accession="MIMAT0012629"
FT /product="bmo-miR-306a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], RT-PCR [1], Illumina [2], SOLID
FT [3]"
FT miRNA 63..83
FT /accession="MIMAT0015303"
FT /product="bmo-miR-306a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2], SOLID [3]"
XX
SQ Sequence 108 BP; 13 A; 39 C; 41 G; 0 T; 15 other;
ccgcgggaga cggaggcggg cggccgccuc agguacuagg ugacucugag uggugccggu 60
cucagagccg ccucgugccu cagcgcgggc uccgccgaca cguccgcc 108
//
ID bta-mir-1388 standard; RNA; BTA; 92 BP.
XX
AC MI0012206;
XX
DE Bos taurus miR-1388 stem-loop
XX
RN [1]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
RN [2]
RX PUBMED; 21912509.
RA Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao
RA Y, Hou M, Zhong J;
RT "Solexa sequencing of novel and differentially expressed microRNAs in
RT testicular and ovarian tissues in Holstein cattle";
RL Int J Biol Sci. 7:1016-1026(2011).
XX
DR ENTREZGENE; 100498802; MIR1388.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0013590"
FT /product="bta-miR-1388-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
FT miRNA 56..77
FT /accession="MIMAT0013591"
FT /product="bta-miR-1388-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
XX
SQ Sequence 92 BP; 17 A; 29 C; 27 G; 0 T; 19 other;
ccugggcggu gccuucagga cuguccaacc ugagaauggu gagcauccag ggacaaucuc 60
agguuuguca gcccgcaagg ugccgucccc uc 92
//
ID bta-mir-194-1 standard; RNA; BTA; 97 BP.
XX
AC MI0012208;
XX
DE Bos taurus miR-194-1 stem-loop
XX
RN [1]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
DR ENTREZGENE; 100498803; MIR194-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0009254"
FT /product="bta-miR-194"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 97 BP; 21 A; 22 C; 22 G; 0 T; 32 other;
uucuuaacgg cgucaucgau uguaacagca acuccaugug gacugugcgu caauuuccag 60
uggagaugcu guuacuuuug auggcugcca auucacu 97
//
ID bta-mir-424 standard; RNA; BTA; 96 BP.
XX
AC MI0012212;
XX
DE Bos taurus miR-424 stem-loop
XX
RN [1]
RX PUBMED; 19765282.
RA Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E,
RA Schellander K, Tesfaye D;
RT "Identification and characterization of miRNAs expressed in the bovine
RT ovary";
RL BMC Genomics. 10:443(2009).
XX
RN [2]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
RN [3]
RX PUBMED; 21912509.
RA Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao
RA Y, Hou M, Zhong J;
RT "Solexa sequencing of novel and differentially expressed microRNAs in
RT testicular and ovarian tissues in Holstein cattle";
RL Int J Biol Sci. 7:1016-1026(2011).
XX
DR ENTREZGENE; 100498845; MIR424.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0013593"
FT /product="bta-miR-424-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT miRNA 58..78
FT /accession="MIMAT0015304"
FT /product="bta-miR-424-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3]"
XX
SQ Sequence 96 BP; 23 A; 21 C; 27 G; 0 T; 25 other;
ucguugacuc cgaggggaug cagcagcaau ucauguuuug aagugcuuua aacgguucaa 60
aacgugaggc gcugcuauac ccccuugcga ggaagu 96
//
ID bta-mir-542 standard; RNA; BTA; 97 BP.
XX
AC MI0012214;
XX
DE Bos taurus miR-542 stem-loop
XX
RN [1]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
RN [2]
RX PUBMED; 21912509.
RA Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao
RA Y, Hou M, Zhong J;
RT "Solexa sequencing of novel and differentially expressed microRNAs in
RT testicular and ovarian tissues in Holstein cattle";
RL Int J Biol Sci. 7:1016-1026(2011).
XX
DR ENTREZGENE; 100498807; MIR542.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0013594"
FT /product="bta-miR-542-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
XX
SQ Sequence 97 BP; 27 A; 24 C; 24 G; 0 T; 22 other;
augcacagac cucagacauc ucggggauca ucaugucacg agauaccacu gugcacuugu 60
gacagauuga uaacugaaag gucugggagc cgcucau 97
//
ID bmo-mir-33 standard; RNA; BMO; 80 BP.
XX
AC MI0012293;
XX
DE Bombyx mori miR-33 stem-loop
XX
RN [1]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
RN [2]
RX PUBMED; 20229201.
RA Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu
RA S, Yu J;
RT "Novel microRNAs in silkworm (Bombyx mori)";
RL Funct Integr Genomics. 10:405-415(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0013599"
FT /product="bmo-miR-33-5p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLID [2]"
FT miRNA 49..70
FT /accession="MIMAT0013600"
FT /product="bmo-miR-33-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLID [2]"
XX
SQ Sequence 80 BP; 25 A; 16 C; 18 G; 0 T; 21 other;
uaaagcgaga gugcauugua guugcauugc accgguucca uuaacgugca auaugacuac 60
aaggcaaauc ccgaauuagu 80
//
ID bmo-mir-308 standard; RNA; BMO; 76 BP.
XX
AC MI0012296;
XX
DE Bombyx mori miR-308 stem-loop
XX
RN [1]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
RN [2]
RX PUBMED; 20229201.
RA Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu
RA S, Yu J;
RT "Novel microRNAs in silkworm (Bombyx mori)";
RL Funct Integr Genomics. 10:405-415(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0013604"
FT /product="bmo-miR-308-5p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLID [2]"
FT miRNA 45..66
FT /accession="MIMAT0013605"
FT /product="bmo-miR-308-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLID [2]"
XX
SQ Sequence 76 BP; 16 A; 14 C; 20 G; 0 T; 26 other;
cguuuccacg cgugguauua uucuugugaa uguguuuuag cuacaaucac aggauaauac 60
ugcgaguggc gguguc 76
//
ID bmo-mir-279b standard; RNA; BMO; 77 BP.
XX
AC MI0012298;
XX
DE Bombyx mori miR-279b stem-loop
XX
RN [1]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..29
FT /accession="MIMAT0013608"
FT /product="bmo-miR-279b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 46..67
FT /accession="MIMAT0013609"
FT /product="bmo-miR-279b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 77 BP; 17 A; 12 C; 20 G; 0 T; 28 other;
uuuguaguua auggguauag gucuaguauc accgggcuga uucugugacu agaucuacac 60
ucauugagug cuuaugg 77
//
ID bmo-mir-1175 standard; RNA; BMO; 82 BP.
XX
AC MI0012300;
XX
DE Bombyx mori miR-1175 stem-loop
XX
RN [1]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
RN [2]
RX PUBMED; 20229201.
RA Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu
RA S, Yu J;
RT "Novel microRNAs in silkworm (Bombyx mori)";
RL Funct Integr Genomics. 10:405-415(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0013612"
FT /product="bmo-miR-1175-5p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLID [2]"
FT miRNA 49..72
FT /accession="MIMAT0013613"
FT /product="bmo-miR-1175-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLID [2]"
XX
SQ Sequence 82 BP; 21 A; 16 C; 17 G; 0 T; 28 other;
gugacagauu aaguggaggu gugaucucuu cacuuuuuau guuuaaagug agauucaacu 60
ccuccaacuu aacccuggau cg 82
//
ID bmo-mir-2755 standard; RNA; BMO; 79 BP.
XX
AC MI0012302;
XX
DE Bombyx mori miR-2755 stem-loop
XX
RN [1]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
RN [2]
RX PUBMED; 20229201.
RA Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu
RA S, Yu J;
RT "Novel microRNAs in silkworm (Bombyx mori)";
RL Funct Integr Genomics. 10:405-415(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0013615"
FT /product="bmo-miR-2755-5p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLID [2]"
FT miRNA 47..69
FT /accession="MIMAT0013616"
FT /product="bmo-miR-2755-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLID [2]"
XX
SQ Sequence 79 BP; 21 A; 18 C; 17 G; 0 T; 23 other;
uuuggugaag caagguggcc uagcagagug uuuucaacaa agcuugcacc cugucagacc 60
auacuuguuu uaacuaacc 79
//
ID bmo-mir-2756 standard; RNA; BMO; 77 BP.
XX
AC MI0012309;
XX
DE Bombyx mori miR-2756 stem-loop
XX
RN [1]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
RN [2]
RX PUBMED; 20229201.
RA Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu
RA S, Yu J;
RT "Novel microRNAs in silkworm (Bombyx mori)";
RL Funct Integr Genomics. 10:405-415(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0013623"
FT /product="bmo-miR-2756-5p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLID [2]"
FT miRNA 46..67
FT /accession="MIMAT0013624"
FT /product="bmo-miR-2756-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLID [2]"
XX
SQ Sequence 77 BP; 15 A; 24 C; 18 G; 0 T; 20 other;
ucaguugcac acccuguagc ugccaagggg cgcagcuuaa uuccgccccu cggcugcuac 60
auuguaugcu acugaau 77
//
ID bmo-mir-2757 standard; RNA; BMO; 78 BP.
XX
AC MI0012311;
XX
DE Bombyx mori miR-2757 stem-loop
XX
RN [1]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
RN [2]
RX PUBMED; 20229201.
RA Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu
RA S, Yu J;
RT "Novel microRNAs in silkworm (Bombyx mori)";
RL Funct Integr Genomics. 10:405-415(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0013627"
FT /product="bmo-miR-2757-5p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLID [2]"
FT miRNA 48..68
FT /accession="MIMAT0013628"
FT /product="bmo-miR-2757-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLID [2]"
XX
SQ Sequence 78 BP; 20 A; 13 C; 13 G; 0 T; 32 other;
aauuauugaa acgggaaugg ucacuuacaa cuguuuuuuc uuucuagcug aaagugucca 60
uuuccguuuu gauacuau 78
//
ID bmo-mir-2758 standard; RNA; BMO; 76 BP.
XX
AC MI0012312;
XX
DE Bombyx mori miR-2758 stem-loop
XX
RN [1]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
RN [2]
RX PUBMED; 20229201.
RA Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu
RA S, Yu J;
RT "Novel microRNAs in silkworm (Bombyx mori)";
RL Funct Integr Genomics. 10:405-415(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0013629"
FT /product="bmo-miR-2758-5p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLID [2]"
FT miRNA 45..66
FT /accession="MIMAT0013630"
FT /product="bmo-miR-2758-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLID [2]"
XX
SQ Sequence 76 BP; 20 A; 13 C; 21 G; 0 T; 22 other;
aguuuagaag acuugguaga acacguagua agcaggugga aucucccugc guguucuacc 60
aaguuaucua gguugg 76
//
ID bmo-mir-2766 standard; RNA; BMO; 73 BP.
XX
AC MI0012320;
XX
DE Bombyx mori miR-2766 stem-loop
XX
RN [1]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
RN [2]
RX PUBMED; 20089182.
RA Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL,
RA Zhang W, Sunkar R;
RT "Deep sequencing of small RNA libraries reveals dynamic regulation of
RT conserved and novel microRNAs and microRNA-stars during silkworm
RT development";
RL BMC Genomics. 11:52(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0013641"
FT /product="bmo-miR-2766-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 45..63
FT /accession="MIMAT0013642"
FT /product="bmo-miR-2766-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
XX
SQ Sequence 73 BP; 8 A; 20 C; 20 G; 0 T; 25 other;
cauuacucgu ccgcccuucg ucuugacugg cgcugucgcu ugcaucaguc uugucgaaug 60
gugggugagu uuc 73
//
ID bmo-mir-375 standard; RNA; BMO; 79 BP.
XX
AC MI0012324;
XX
DE Bombyx mori miR-375 stem-loop
XX
RN [1]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
RN [2]
RX PUBMED; 20089182.
RA Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL,
RA Zhang W, Sunkar R;
RT "Deep sequencing of small RNA libraries reveals dynamic regulation of
RT conserved and novel microRNAs and microRNA-stars during silkworm
RT development";
RL BMC Genomics. 11:52(2010).
XX
RN [3]
RX PUBMED; 20229201.
RA Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu
RA S, Yu J;
RT "Novel microRNAs in silkworm (Bombyx mori)";
RL Funct Integr Genomics. 10:405-415(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0013648"
FT /product="bmo-miR-375-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2], SOLID [3]"
FT miRNA 47..69
FT /accession="MIMAT0013649"
FT /product="bmo-miR-375-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2], SOLID [3]"
XX
SQ Sequence 79 BP; 17 A; 24 C; 22 G; 0 T; 16 other;
cagcaaggcg acccgagcgg ucugagcaaa cugugacaau aucuaguuug uucgccccgg 60
cucgugucgc caagcguca 79
//
ID bmo-mir-2771 standard; RNA; BMO; 98 BP.
XX
AC MI0012328;
XX
DE Bombyx mori miR-2771 stem-loop
XX
RN [1]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..36
FT /accession="MIMAT0013654"
FT /product="bmo-miR-2771-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 67..88
FT /accession="MIMAT0013655"
FT /product="bmo-miR-2771-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 98 BP; 27 A; 20 C; 24 G; 0 T; 27 other;
ucccaacuuu uaacauuacg aggauggguu uaguuagggg agucccaacu gagugguccc 60
cugaagauau uaugcagaac acuaauguac ccauuggg 98
//
ID bmo-mir-2777 standard; RNA; BMO; 75 BP.
XX
AC MI0012336;
XX
DE Bombyx mori miR-2777 stem-loop
XX
RN [1]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..30
FT /accession="MIMAT0013662"
FT /product="bmo-miR-2777-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 45..66
FT /accession="MIMAT0013663"
FT /product="bmo-miR-2777-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 75 BP; 13 A; 18 C; 30 G; 0 T; 14 other;
cgaaaccccu agggaccuug ccuggguuau cucggugucg gacgagagcg caggggaggu 60
gcuuaguggg gacgc 75
//
ID bmo-mir-2774a-4 standard; RNA; BMO; 73 BP.
XX
AC MI0012337;
XX
DE Bombyx mori miR-2774a-4 stem-loop
XX
RN [1]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 44..63
FT /accession="MIMAT0013658"
FT /product="bmo-miR-2774a"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 73 BP; 18 A; 20 C; 16 G; 0 T; 19 other;
acaacaacau ucggaccguc ggucuaccga gcaauauuac cugcucggug gaagaucguc 60
ccuuugucgu aua 73
//
ID bmo-mir-2778a-1 standard; RNA; BMO; 77 BP.
XX
AC MI0012338;
XX
DE Bombyx mori miR-2778a-1 stem-loop
XX
RN [1]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..30
FT /accession="MIMAT0013664"
FT /product="bmo-miR-2778a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 46..67
FT /accession="MIMAT0013665"
FT /product="bmo-miR-2778a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 77 BP; 24 A; 16 C; 15 G; 0 T; 22 other;
cacggcaaaa guuuuuuugc auauccugca caguuucagu ucucgcagag uacgcaaaaa 60
aacaauuuug acgugag 77
//
ID bmo-mir-2778c standard; RNA; BMO; 77 BP.
XX
AC MI0012339;
XX
DE Bombyx mori miR-2778c stem-loop
XX
RN [1]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..30
FT /accession="MIMAT0013666"
FT /product="bmo-miR-2778c-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 46..67
FT /accession="MIMAT0013667"
FT /product="bmo-miR-2778c-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 77 BP; 23 A; 16 C; 15 G; 0 T; 23 other;
cacggcaaaa guuuuuuugc auauccugca caguuucagu ucucgcagag uacgcaaaaa 60
aucaauuuug acgugag 77
//
ID bmo-mir-2778a-3 standard; RNA; BMO; 77 BP.
XX
AC MI0012340;
XX
DE Bombyx mori miR-2778a-3 stem-loop
XX
RN [1]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..30
FT /accession="MIMAT0013664"
FT /product="bmo-miR-2778a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 46..67
FT /accession="MIMAT0013665"
FT /product="bmo-miR-2778a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 77 BP; 25 A; 16 C; 13 G; 0 T; 23 other;
cacggcaaaa guuuuuuugc auauccugca caguuucagu ucucgcagag uacgcaaaaa 60
aacaauugag uauuuac 77
//
ID bmo-mir-2774a-2 standard; RNA; BMO; 73 BP.
XX
AC MI0012347;
XX
DE Bombyx mori miR-2774a-2 stem-loop
XX
RN [1]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 44..63
FT /accession="MIMAT0013658"
FT /product="bmo-miR-2774a"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 73 BP; 18 A; 22 C; 15 G; 0 T; 18 other;
acaacaacau ucggaccguc ggucuaccga gcaauaucac ccgcucggug gaagaucguc 60
ccuuugucau uau 73
//
ID bmo-mir-2778d standard; RNA; BMO; 76 BP.
XX
AC MI0012349;
XX
DE Bombyx mori miR-2778d stem-loop
XX
RN [1]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
RN [2]
RX PUBMED; 20229201.
RA Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu
RA S, Yu J;
RT "Novel microRNAs in silkworm (Bombyx mori)";
RL Funct Integr Genomics. 10:405-415(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..30
FT /accession="MIMAT0013673"
FT /product="bmo-miR-2778d-5p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLID [2]"
FT miRNA 46..66
FT /accession="MIMAT0013674"
FT /product="bmo-miR-2778d-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLID [2]"
XX
SQ Sequence 76 BP; 23 A; 16 C; 15 G; 0 T; 22 other;
cacggcaaaa guuuuuuugc auauccugca caguuucagu ucucgcagag uacgcaaaaa 60
acaauuuuga cgugag 76
//
ID bmo-mir-2778b standard; RNA; BMO; 77 BP.
XX
AC MI0012351;
XX
DE Bombyx mori miR-2778b stem-loop
XX
RN [1]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
RN [2]
RX PUBMED; 20229201.
RA Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu
RA S, Yu J;
RT "Novel microRNAs in silkworm (Bombyx mori)";
RL Funct Integr Genomics. 10:405-415(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..30
FT /accession="MIMAT0013675"
FT /product="bmo-miR-2778b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLID [2]"
FT miRNA 46..67
FT /accession="MIMAT0013676"
FT /product="bmo-miR-2778b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLID [2]"
XX
SQ Sequence 77 BP; 24 A; 15 C; 16 G; 0 T; 22 other;
cacggcaaaa guuuuuuugc auauccugca caguuucagu ucucgcagag uaggcaaaaa 60
aacaauuuug acgugag 77
//
ID bmo-mir-2778a-2 standard; RNA; BMO; 80 BP.
XX
AC MI0012352;
XX
DE Bombyx mori miR-2778a-2 stem-loop
XX
RN [1]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..32
FT /accession="MIMAT0015305"
FT /product="bmo-miR-2778a-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 49..70
FT /accession="MIMAT0013665"
FT /product="bmo-miR-2778a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 80 BP; 25 A; 16 C; 15 G; 0 T; 24 other;
acucacggca aaaguuuuuu uguauauccu gcacaguuuc aguucucgca gaguacgcaa 60
aaaaacaauu uugacgugag 80
//
ID bmo-mir-2778a-4 standard; RNA; BMO; 77 BP.
XX
AC MI0012353;
XX
DE Bombyx mori miR-2778a-4 stem-loop
XX
RN [1]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..30
FT /accession="MIMAT0015306"
FT /product="bmo-miR-2778a-4-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 46..67
FT /accession="MIMAT0013665"
FT /product="bmo-miR-2778a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 77 BP; 25 A; 16 C; 15 G; 0 T; 21 other;
cacggcaaaa guuauuuugc auauccugca caguuucagu ucucgcagag uacgcaaaaa 60
aacaauuuug acgugag 77
//
ID bmo-mir-2787 standard; RNA; BMO; 98 BP.
XX
AC MI0012360;
XX
DE Bombyx mori miR-2787 stem-loop
XX
RN [1]
RX PUBMED; 20199675.
RA Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q;
RT "MicroRNAs of Bombyx mori identified by Solexa sequencing";
RL BMC Genomics. 11:148(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..35
FT /accession="MIMAT0013683"
FT /product="bmo-miR-2787-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 65..88
FT /accession="MIMAT0013684"
FT /product="bmo-miR-2787-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 98 BP; 37 A; 13 C; 17 G; 0 T; 31 other;
aaagaaaaca uaucuugaau uugauuagca cuaaaugugu ugauaauauu aucacuaaug 60
ucgcugagaa aguuccacga ugugcauguc aaaugaau 98
//
ID mdo-mir-26-2 standard; RNA; MDO; 68 BP.
XX
AC MI0012490;
XX
DE Monodelphis domestica miR-26-2 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315612; MIR26-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..25
FT /accession="MIMAT0012736"
FT /product="mdo-miR-26-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0004745"
FT miRNA 40..61
FT /accession="MIMAT0026929"
FT /product="mdo-miR-26-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 68 BP; 10 A; 18 C; 16 G; 0 T; 24 other;
ccguuucaag uaauccagga uaggcuguuu ucucuucagc cuguucucca uuacuugguu 60
cgggggcc 68
//
ID mdo-mir-26-1 standard; RNA; MDO; 69 BP.
XX
AC MI0012492;
XX
DE Monodelphis domestica miR-26-1 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315614; MIR26-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..21
FT /accession="MIMAT0012736"
FT /product="mdo-miR-26-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000750"
FT miRNA 38..59
FT /accession="MIMAT0031031"
FT /product="mdo-miR-26-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 69 BP; 11 A; 15 C; 21 G; 0 T; 22 other;
uucaaguaau ccaggauagg cuguguccag cugcgggccu auccuugauu gcuuguuucu 60
ggagguggc 69
//
ID mdo-mir-148 standard; RNA; MDO; 68 BP.
XX
AC MI0012493;
XX
DE Monodelphis domestica miR-148 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315649; MIR148.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0026930"
FT /product="mdo-miR-148-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 44..65
FT /accession="MIMAT0012737"
FT /product="mdo-miR-148-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0006868"
XX
SQ Sequence 68 BP; 20 A; 14 C; 17 G; 0 T; 17 other;
gaggcaaagu ucugggacac ucagacucug auuaggauag aagucagugc acuacagaac 60
uuugucuc 68
//
ID mdo-mir-153-2 standard; RNA; MDO; 87 BP.
XX
AC MI0012494;
XX
DE Monodelphis domestica miR-153-2 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315634; MIR153-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0026931"
FT /product="mdo-miR-153-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 53..74
FT /accession="MIMAT0012738"
FT /product="mdo-miR-153-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001188"
XX
SQ Sequence 87 BP; 22 A; 14 C; 24 G; 0 T; 27 other;
agcgguugcc ggugucauuu uugugauguu gcagcuagua auaugagccc aguugcauag 60
ucacaaaagu gaucauugga aacugug 87
//
ID mdo-mir-301 standard; RNA; MDO; 85 BP.
XX
AC MI0012495;
XX
DE Monodelphis domestica miR-301 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315642; MIR301.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..35
FT /accession="MIMAT0026932"
FT /product="mdo-miR-301-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 51..73
FT /accession="MIMAT0012739"
FT /product="mdo-miR-301-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000745"
XX
SQ Sequence 85 BP; 26 A; 18 C; 16 G; 0 T; 25 other;
acugcuaacg aaugcucuga cuuuauugca cuacuguacu uuacagcuag cagugcaaua 60
guauugucaa agcaucugaa agcag 85
//
ID mdo-mir-190a standard; RNA; MDO; 85 BP.
XX
AC MI0012496;
XX
DE Monodelphis domestica miR-190a stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315615; MIR190A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0012740"
FT /product="mdo-miR-190a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001224"
FT miRNA 52..72
FT /accession="MIMAT0026933"
FT /product="mdo-miR-190a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 85 BP; 22 A; 16 C; 14 G; 0 T; 33 other;
ugcaggccuc ugugugauau guuugauaua uuagguuguu auuuaaucca acuauauauc 60
aaacauauuc cuacaguguc cugcc 85
//
ID mdo-mir-429 standard; RNA; MDO; 72 BP.
XX
AC MI0012497;
XX
DE Monodelphis domestica miR-429 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
DR ENTREZGENE; 100315616; MIR429.
XX
FH Key Location/Qualifiers
FH
FT miRNA 45..64
FT /accession="MIMAT0012741"
FT /product="mdo-miR-429"
FT /evidence=not_experimental
XX
SQ Sequence 72 BP; 17 A; 14 C; 15 G; 0 T; 26 other;
gauugguguc uuaccagaca aaguuagauc ucgcuauuuc ugucuaauac ugucugguaa 60
ugccauuggu ca 72
//
ID mdo-mir-126 standard; RNA; MDO; 69 BP.
XX
AC MI0012499;
XX
DE Monodelphis domestica miR-126 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315650; MIR126.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..25
FT /accession="MIMAT0012743"
FT /product="mdo-miR-126-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 42..63
FT /accession="MIMAT0026935"
FT /product="mdo-miR-126-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 69 BP; 17 A; 15 C; 16 G; 0 T; 21 other;
gggucauuau uacuuuuggu acgcgcugug acacaucaaa cucguaccgu gaguaauaau 60
gcgccauug 69
//
ID mdo-mir-139 standard; RNA; MDO; 69 BP.
XX
AC MI0012500;
XX
DE Monodelphis domestica miR-139 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315635; MIR139.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..23
FT /accession="MIMAT0012744"
FT /product="mdo-miR-139-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 42..64
FT /accession="MIMAT0026936"
FT /product="mdo-miR-139-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 69 BP; 19 A; 13 C; 18 G; 0 T; 19 other;
uguauucuac agugcaugug ucuccagugu gacuaaggga cuggagauac agcccuguug 60
gaauaacaa 69
//
ID mdo-mir-140 standard; RNA; MDO; 70 BP.
XX
AC MI0012501;
XX
DE Monodelphis domestica miR-140 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315618; MIR140.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0012745"
FT /product="mdo-miR-140-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 45..66
FT /accession="MIMAT0026937"
FT /product="mdo-miR-140-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 70 BP; 15 A; 18 C; 19 G; 0 T; 18 other;
ccugccagug guuuuacccu augguagguu acgucaugcu guucuaccac aggguagaac 60
cacggacagg 70
//
ID mdo-mir-146b standard; RNA; MDO; 68 BP.
XX
AC MI0012503;
XX
DE Monodelphis domestica miR-146b stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315620; MIR146B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0012747"
FT /product="mdo-miR-146b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 48..67
FT /accession="MIMAT0026939"
FT /product="mdo-miR-146b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 68 BP; 17 A; 15 C; 19 G; 0 T; 17 other;
cuggcucuga gaacugaauu ccauaggcug ugagcucaug caaaugcccu aggaagucag 60
uucuggag 68
//
ID mdo-mir-210 standard; RNA; MDO; 82 BP.
XX
AC MI0012507;
XX
DE Monodelphis domestica miR-210 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315621; MIR210.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0026941"
FT /product="mdo-miR-210-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 48..68
FT /accession="MIMAT0012750"
FT /product="mdo-miR-210-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 82 BP; 16 A; 29 C; 26 G; 0 T; 11 other;
ccggccgcag gggagccacu gacuaacgca cauugcgcuc aggacccacu gugcguguga 60
cagcggcuac cgugcaaccg gc 82
//
ID mdo-mir-455 standard; RNA; MDO; 87 BP.
XX
AC MI0012509;
XX
DE Monodelphis domestica miR-455 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315623; MIR455.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0012752"
FT /product="mdo-miR-455-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 52..73
FT /accession="MIMAT0026942"
FT /product="mdo-miR-455-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 87 BP; 19 A; 24 C; 23 G; 0 T; 21 other;
ucccuggcgu gaggguaugu gcccuuggac uacaucgugg aagccaacac caugcagucc 60
augggcauau acacuugccu caagguu 87
//
ID mdo-mir-499 standard; RNA; MDO; 79 BP.
XX
AC MI0012510;
XX
DE Monodelphis domestica miR-499 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315652; MIR499.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0012753"
FT /product="mdo-miR-499-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 52..72
FT /accession="MIMAT0026943"
FT /product="mdo-miR-499-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 79 BP; 20 A; 17 C; 17 G; 0 T; 25 other;
gggcgggcag cuguuaagac uugcagugau guuuaauucu ucucuaugug aacaucacaa 60
caagucuaua caguuuccc 79
//
ID mdo-mir-33 standard; RNA; MDO; 68 BP.
XX
AC MI0012511;
XX
DE Monodelphis domestica miR-33 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315624; MIR33.
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..22
FT /accession="MIMAT0012754"
FT /product="mdo-miR-33-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 42..61
FT /accession="MIMAT0026944"
FT /product="mdo-miR-33-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 68 BP; 11 A; 18 C; 21 G; 0 T; 18 other;
ggugcauugu aguugcauug cacgucgugu ccgggccgug caauguuucc acagugcauc 60
ccagaggc 68
//
ID mdo-mir-460 standard; RNA; MDO; 85 BP.
XX
AC MI0012515;
XX
DE Monodelphis domestica miR-460 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315626; MIR460.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0012758"
FT /product="mdo-miR-460-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 51..72
FT /accession="MIMAT0026945"
FT /product="mdo-miR-460-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 85 BP; 24 A; 20 C; 15 G; 0 T; 26 other;
cugacuuuau agaaccugca uuguacacac uguguguuuu cauucccaug cacagcgcau 60
acaaugugga uacuauaaga gucac 85
//
ID mdo-mir-497 standard; RNA; MDO; 84 BP.
XX
AC MI0012519;
XX
DE Monodelphis domestica miR-497 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315628; MIR497.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0012762"
FT /product="mdo-miR-497-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 54..75
FT /accession="MIMAT0026946"
FT /product="mdo-miR-497-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 84 BP; 17 A; 24 C; 23 G; 0 T; 20 other;
ccugccuccg ccccagcagc acacuguggu uuguucagug uuauggccaa guccaaacca 60
cacuguggug uuagagcgag ggua 84
//
ID mml-mir-129-2 standard; RNA; MML; 92 BP.
XX
AC MI0012532;
XX
DE Macaca mulatta miR-129-2 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315431; MIR129-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0006185"
FT /product="mml-miR-129-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 58..78
FT /accession="MIMAT0031083"
FT /product="mml-miR-129-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 92 BP; 19 A; 27 C; 23 G; 0 T; 23 other;
cugcccuucg ugaaucuuuu ugcggucugg gcuugcugua cauaacucaa uagccggaag 60
cccuuacccc aaaaagcauu cgcggagggc gc 92
//
ID mml-mir-541 standard; RNA; MML; 84 BP.
XX
AC MI0012541;
XX
DE Macaca mulatta miR-541 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315571; MIR541.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..34
FT /accession="MIMAT0012784"
FT /product="mml-miR-541-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 54..75
FT /accession="MIMAT0026951"
FT /product="mml-miR-541-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 84 BP; 19 A; 19 C; 27 G; 0 T; 19 other;
acgucaggga aaggauucug cugucggucc cacuccaaag ugcauagaau gggugguggg 60
cacagaaucc ggacucugcu ugug 84
//
ID mml-mir-708 standard; RNA; MML; 88 BP.
XX
AC MI0012542;
XX
DE Macaca mulatta miR-708 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315476; MIR708.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0012785"
FT /product="mml-miR-708-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 57..79
FT /accession="MIMAT0026952"
FT /product="mml-miR-708-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 88 BP; 27 A; 19 C; 24 G; 0 T; 18 other;
aacugcccuc aaggagcuua caaucuagcu ggggguaaau gacuugcaca ugaacacaac 60
uagacuguga gcuucuagag ggcaggga 88
//
ID mml-mir-543 standard; RNA; MML; 80 BP.
XX
AC MI0012544;
XX
DE Macaca mulatta miR-543 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315433; MIR543.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0026953"
FT /product="mml-miR-543-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 49..70
FT /accession="MIMAT0012787"
FT /product="mml-miR-543-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 80 BP; 15 A; 16 C; 17 G; 0 T; 32 other;
gguacuuaau gagaaguugc ccgugucuuu uucgcuuuau uugugacgaa acauucgcgg 60
ugcacuucuu uuucaguauc 80
//
ID mml-mir-760 standard; RNA; MML; 80 BP.
XX
AC MI0012545;
XX
DE Macaca mulatta miR-760 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
DR ENTREZGENE; 100315374; MIR760.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..68
FT /accession="MIMAT0012788"
FT /product="mml-miR-760"
FT /evidence=not_experimental
XX
SQ Sequence 80 BP; 16 A; 27 C; 24 G; 0 T; 13 other;
ggcgcgucgc cccccucagu ccaccagagc ccggauaccu cagaaauucg gcucuggguc 60
uguggggagc gaaaugcaac 80
//
ID mml-mir-670 standard; RNA; MML; 89 BP.
XX
AC MI0012549;
XX
DE Macaca mulatta miR-670 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315377; MIR670.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0012792"
FT /product="mml-miR-670-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 52..71
FT /accession="MIMAT0026954"
FT /product="mml-miR-670-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 89 BP; 14 A; 20 C; 24 G; 0 T; 31 other;
gguggaccug augucccuga guguaugugg ugaaccugaa uuugccuugg guuuccucau 60
auucauucag gagugucagu ugccccuuc 89
//
ID oan-mir-29b-2 standard; RNA; OAN; 81 BP.
XX
AC MI0012554;
XX
DE Ornithorhynchus anatinus miR-29b-2 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
DR ENTREZGENE; 100314611; MIR29B-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..73
FT /accession="MIMAT0006809"
FT /product="oan-miR-29b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 81 BP; 17 A; 15 C; 18 G; 0 T; 31 other;
cuucuggaag cugguuucac augguggcuu agauuuuucc aucucuguau cuagcaccau 60
uugaaaucag uguuuuagga g 81
//
ID oan-mir-9-2 standard; RNA; OAN; 68 BP.
XX
AC MI0012557;
XX
DE Ornithorhynchus anatinus miR-9-2 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
DR ENTREZGENE; 100314612; MIR9-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0006792"
FT /product="oan-miR-9-5p"
FT /evidence=not_experimental
XX
SQ Sequence 68 BP; 19 A; 8 C; 15 G; 0 T; 26 other;
guuguuaucu uugguuaucu agcuguauga guguauuggu cuucauaaag cuagauaacc 60
gaaaguaa 68
//
ID rno-mir-202 standard; RNA; RNO; 72 BP.
XX
AC MI0012584;
XX
DE Rattus norvegicus miR-202 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314122; Mir202.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..27
FT /accession="MIMAT0012822"
FT /product="rno-miR-202-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 45..65
FT /accession="MIMAT0017355"
FT /product="rno-miR-202-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 72 BP; 17 A; 12 C; 18 G; 0 T; 25 other;
guuccuuuuu ccuaugcaua uacuucuuug uggaucuggu cuaaagaggu auagcgcaug 60
ggaaaaugga gc 72
//
ID rno-mir-490 standard; RNA; RNO; 84 BP.
XX
AC MI0012585;
XX
DE Rattus norvegicus miR-490 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314208; Mir490.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..41
FT /accession="MIMAT0017356"
FT /product="rno-miR-490-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 59..80
FT /accession="MIMAT0012823"
FT /product="rno-miR-490-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 84 BP; 21 A; 19 C; 21 G; 0 T; 23 other;
uggaaaguuc auuguucgac accauggauc uccagguggg ucacguuuag auauacacca 60
accuggagga cuccaugcug uuga 84
//
ID rno-mir-1224 standard; RNA; RNO; 85 BP.
XX
AC MI0012589;
XX
DE Rattus norvegicus miR-1224 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314125; Mir1224.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..21
FT /accession="MIMAT0012827"
FT /product="rno-miR-1224"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 85 BP; 14 A; 28 C; 23 G; 0 T; 20 other;
gugaggacug gggaggugga ggguaguacc auuagagcca gagcucuguc ucagcucccu 60
cuccccccac cucuucucuc cucag 85
//
ID rno-mir-362 standard; RNA; RNO; 65 BP.
XX
AC MI0012590;
XX
DE Rattus norvegicus miR-362 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314269; Mir362.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..28
FT /accession="MIMAT0012828"
FT /product="rno-miR-362-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 42..63
FT /accession="MIMAT0017357"
FT /product="rno-miR-362-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 65 BP; 18 A; 16 C; 14 G; 0 T; 17 other;
cucgaauccu uggaaccuag gugugaaugc ugcuucagug caacacaccu guucaaggau 60
ucaaa 65
//
ID rno-mir-511 standard; RNA; RNO; 79 BP.
XX
AC MI0012591;
XX
DE Rattus norvegicus miR-511 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314126; Mir511.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0012829"
FT /product="rno-miR-511-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 49..69
FT /accession="MIMAT0017358"
FT /product="rno-miR-511-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 79 BP; 23 A; 18 C; 17 G; 0 T; 21 other;
gauacccacc augccuuuug cucugcacuc aguacauaau cauuugugaa uguguagcaa 60
aagacaggau ggggaucca 79
//
ID rno-mir-504 standard; RNA; RNO; 77 BP.
XX
AC MI0012592;
XX
DE Rattus norvegicus miR-504 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
DR ENTREZGENE; 100314127; Mir504.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0012830"
FT /product="rno-miR-504"
FT /evidence=not_experimental
XX
SQ Sequence 77 BP; 18 A; 17 C; 26 G; 0 T; 16 other;
cuguugggag acccuggucu gcacucuguc uggaaacuua cagaagggag agcagggcag 60
gguuucccau acagagg 77
//
ID rno-mir-544 standard; RNA; RNO; 78 BP.
XX
AC MI0012593;
XX
DE Rattus norvegicus miR-544 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314128; Mir544.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..31
FT /accession="MIMAT0017359"
FT /product="rno-miR-544-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 47..67
FT /accession="MIMAT0012831"
FT /product="rno-miR-544-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 78 BP; 23 A; 14 C; 18 G; 0 T; 23 other;
caccuaggga ucuuguuaaa aagcagauuc ugauugaggg accaagauuc ugcauuuuua 60
gcaagcucuc aagugaug 78
//
ID rno-mir-582 standard; RNA; RNO; 81 BP.
XX
AC MI0012595;
XX
DE Rattus norvegicus miR-582 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314209; Mir582.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0012833"
FT /product="rno-miR-582-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 48..69
FT /accession="MIMAT0017360"
FT /product="rno-miR-582-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 81 BP; 28 A; 17 C; 13 G; 0 T; 23 other;
acucuuugga uacaguuguu caaccaguua cuaaucuaac uaauuguaac cuguugaaca 60
acugaaccca aagggugcaa a 81
//
ID rno-mir-615 standard; RNA; RNO; 92 BP.
XX
AC MI0012597;
XX
DE Rattus norvegicus miR-615 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
DR ENTREZGENE; 100314129; Mir615.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0012835"
FT /product="rno-miR-615"
FT /evidence=not_experimental
XX
SQ Sequence 92 BP; 7 A; 30 C; 34 G; 0 T; 21 other;
ucgggagggg cgggaggggg guccccggug cucggaucuc gagggugcuu auuguucggu 60
ccgagccugg gucucccucu uccccccauc cc 92
//
ID rno-mir-653 standard; RNA; RNO; 97 BP.
XX
AC MI0012600;
XX
DE Rattus norvegicus miR-653 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314179; Mir653.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..40
FT /accession="MIMAT0012838"
FT /product="rno-miR-653-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 57..78
FT /accession="MIMAT0017361"
FT /product="rno-miR-653-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 97 BP; 28 A; 19 C; 15 G; 0 T; 35 other;
auuuuucauu cuuucagugu ugaaacauuc ucuacugaac caagcuccaa aacaaguuca 60
cugggguuug uuucacuauu gcaagaauug cuaagua 97
//
ID rno-mir-802 standard; RNA; RNO; 96 BP.
XX
AC MI0012602;
XX
DE Rattus norvegicus miR-802 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314132; Mir802.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0012840"
FT /product="rno-miR-802-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 55..77
FT /accession="MIMAT0017362"
FT /product="rno-miR-802-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 96 BP; 26 A; 22 C; 17 G; 0 T; 31 other;
guccuauuau uugcagucag uaacaaagau ucauccuugu gucgaucaua cagcacggag 60
agucuuuguc acucagugua auuaauagcc uucacc 96
//
ID rno-mir-675 standard; RNA; RNO; 84 BP.
XX
AC MI0012603;
XX
DE Rattus norvegicus miR-675 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314133; Mir675.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0012841"
FT /product="rno-miR-675-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 50..70
FT /accession="MIMAT0017363"
FT /product="rno-miR-675-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 84 BP; 14 A; 25 C; 29 G; 0 T; 16 other;
ugcggcccag ggacuggugc ggaaagggcc cacaguggac uuggugcacu guaugcccua 60
accgcucagu cccugggucu ggca 84
//
ID rno-mir-201 standard; RNA; RNO; 80 BP.
XX
AC MI0012608;
XX
DE Rattus norvegicus miR-201 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314135; Mir201.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..31
FT /accession="MIMAT0012846"
FT /product="rno-miR-201-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 47..68
FT /accession="MIMAT0017364"
FT /product="rno-miR-201-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 80 BP; 23 A; 17 C; 15 G; 0 T; 25 other;
guacaguacc ucacucagua aggcauuguu cuucuauacu aauaaaugaa cagcgccuuu 60
cuguguagcg uaaugugcaa 80
//
ID rno-mir-465 standard; RNA; RNO; 77 BP.
XX
AC MI0012612;
XX
DE Rattus norvegicus miR-465 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314288; Mir465.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0012850"
FT /product="rno-miR-465-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0017367"
FT /product="rno-miR-465-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 77 BP; 18 A; 11 C; 23 G; 0 T; 25 other;
ugcagugccc uauuuagaac ggugcuggug ugaugaauga aguuugauca gugccuuucu 60
gaguagagua aggcuua 77
//
ID rno-mir-547 standard; RNA; RNO; 81 BP.
XX
AC MI0012613;
XX
DE Rattus norvegicus miR-547 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314138; Mir547.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0017368"
FT /product="rno-miR-547-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 49..70
FT /accession="MIMAT0012851"
FT /product="rno-miR-547-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 81 BP; 25 A; 13 C; 16 G; 0 T; 27 other;
gugugaugua ucacuucagg auguaccacc cauuuaaugg aaaauaugau ugguacuucu 60
uuaagugaga uaaugcacac u 81
//
ID rno-mir-667 standard; RNA; RNO; 92 BP.
XX
AC MI0012614;
XX
DE Rattus norvegicus miR-667 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314139; Mir667.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0017369"
FT /product="rno-miR-667-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 56..77
FT /accession="MIMAT0012852"
FT /product="rno-miR-667-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 92 BP; 18 A; 31 C; 26 G; 0 T; 17 other;
guggguacug gccucggugc ugguggagca gugagcacgc cauacauuau aucugugaca 60
ccugccaccc agcccaaggc cccuaggccc ac 92
//
ID rno-mir-764 standard; RNA; RNO; 108 BP.
XX
AC MI0012616;
XX
DE Rattus norvegicus miR-764 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314274; Mir764.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..48
FT /accession="MIMAT0012854"
FT /product="rno-miR-764-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 65..87
FT /accession="MIMAT0017370"
FT /product="rno-miR-764-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 108 BP; 29 A; 29 C; 24 G; 0 T; 26 other;
ucaacacaau caaaaucucg gaggcaggug cucacauguc cuccuccaug ccuacacaua 60
cauggaggag gccauagugg caacugucac caugauugau uucguugg 108
//
ID rno-mir-666 standard; RNA; RNO; 99 BP.
XX
AC MI0012617;
XX
DE Rattus norvegicus miR-666 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314140; Mir666.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..38
FT /accession="MIMAT0012855"
FT /product="rno-miR-666-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 56..78
FT /accession="MIMAT0017371"
FT /product="rno-miR-666-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 99 BP; 18 A; 29 C; 36 G; 0 T; 16 other;
cugauucugc cugcguggag cgggcacggc ugugagagcc cccuagguac agcggggcug 60
cagcgugauc gccugcucac gcacaggaag ugacgacag 99
//
ID rno-mir-496 standard; RNA; RNO; 79 BP.
XX
AC MI0012622;
XX
DE Rattus norvegicus miR-496 stem-loop
XX
RN [1]
RX PUBMED; 18215311.
RA Artzi S, Kiezun A, Shomron N;
RT "miRNAminer: a tool for homologous microRNA gene search";
RL BMC Bioinformatics. 9:39(2008).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314212; Mir496.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..33
FT /accession="MIMAT0017372"
FT /product="rno-miR-496-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 49..69
FT /accession="MIMAT0012860"
FT /product="rno-miR-496-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 79 BP; 16 A; 13 C; 19 G; 0 T; 31 other;
aguguucgaa uggagguugu ccauggugug uucauuuuau uuaugaugag uauuacaugg 60
ccaaucuccu uucggcacu 79
//
ID eca-mir-628a standard; RNA; ECA; 95 BP.
XX
AC MI0012659;
XX
DE Equus caballus miR-628a stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314781; MIR628A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0012903"
FT /product="eca-miR-628a"
FT /evidence=not_experimental
XX
SQ Sequence 95 BP; 28 A; 16 C; 23 G; 0 T; 28 other;
auagcuguug ugucacuucc ucaugcugac auauuuacua gaggguaaaa uuaauaaccu 60
ucuaguaaga guggcagucg aagggaaggg cucau 95
//
ID eca-mir-30c standard; RNA; ECA; 89 BP.
XX
AC MI0012671;
XX
DE Equus caballus miR-30c stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100315039; MIR30C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0012915"
FT /product="eca-miR-30c"
FT /evidence=not_experimental
XX
SQ Sequence 89 BP; 18 A; 20 C; 25 G; 0 T; 26 other;
accaugcugu agugugugua aacauccuac acucucagcu gugagcucaa gguggcuggg 60
agaggguugu uuacuccuuc ugccaugga 89
//
ID eca-mir-30e standard; RNA; ECA; 92 BP.
XX
AC MI0012672;
XX
DE Equus caballus miR-30e stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100315112; MIR30E.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0012916"
FT /product="eca-miR-30e"
FT /evidence=not_experimental
XX
SQ Sequence 92 BP; 20 A; 19 C; 28 G; 0 T; 25 other;
gggcagucuu ugcuacugua aacauccuug acuggaagcu guaagguguu cagaggagcu 60
uucagucgga uguuuacagc ggcaggcugc ca 92
//
ID eca-mir-140 standard; RNA; ECA; 61 BP.
XX
AC MI0012682;
XX
DE Equus caballus miR-140 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100315002; MIR140.
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..23
FT /accession="MIMAT0012926"
FT /product="eca-miR-140-5p"
FT /evidence=not_experimental
FT miRNA 41..61
FT /accession="MIMAT0012927"
FT /product="eca-miR-140-3p"
FT /evidence=not_experimental
XX
SQ Sequence 61 BP; 13 A; 15 C; 16 G; 0 T; 17 other;
ccagugguuu uacccuaugg uagguuacgu caugcuguuc uaccacaggg uagaaccacg 60
g 61
//
ID eca-mir-148a standard; RNA; ECA; 68 BP.
XX
AC MI0012689;
XX
DE Equus caballus miR-148a stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314797; MIR148A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 44..65
FT /accession="MIMAT0012935"
FT /product="eca-miR-148a"
FT /evidence=not_experimental
XX
SQ Sequence 68 BP; 21 A; 15 C; 15 G; 0 T; 17 other;
gaggcaaagu ucugagacac uccgacucug aauaugauag aagucagugc acuacagaac 60
uuugucuc 68
//
ID eca-mir-335 standard; RNA; ECA; 75 BP.
XX
AC MI0012696;
XX
DE Equus caballus miR-335 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314801; MIR335.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..32
FT /accession="MIMAT0012942"
FT /product="eca-miR-335"
FT /evidence=not_experimental
XX
SQ Sequence 75 BP; 21 A; 17 C; 15 G; 0 T; 22 other;
gagcgggggu caagagcaau aacgaaaaau guuugucaua aaccguuuuu cauuauugcu 60
ccugaccucc ucuca 75
//
ID eca-mir-671 standard; RNA; ECA; 84 BP.
XX
AC MI0012701;
XX
DE Equus caballus miR-671 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100315004; MIR671.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0012948"
FT /product="eca-miR-671-5p"
FT /evidence=not_experimental
FT miRNA 53..73
FT /accession="MIMAT0012949"
FT /product="eca-miR-671-3p"
FT /evidence=not_experimental
XX
SQ Sequence 84 BP; 13 A; 22 C; 32 G; 0 T; 17 other;
ggccaggaag aggaggaagc ccuggagggg cuggagguga uggauguuuu ccuccgguuc 60
ucagggcucc accucuuccg ggcc 84
//
ID eca-mir-101-1 standard; RNA; ECA; 59 BP.
XX
AC MI0012703;
XX
DE Equus caballus miR-101 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314805; MIR101.
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..59
FT /accession="MIMAT0012951"
FT /product="eca-miR-101"
FT /evidence=not_experimental
XX
SQ Sequence 59 BP; 17 A; 11 C; 13 G; 0 T; 18 other;
cucaguuauc acagugcuga ugcugucagu ucuaaaggua caguacugug auaacugaa 59
//
ID eca-mir-15b standard; RNA; ECA; 64 BP.
XX
AC MI0012706;
XX
DE Equus caballus miR-15b stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314806; MIR15B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0012954"
FT /product="eca-miR-15b"
FT /evidence=not_experimental
XX
SQ Sequence 64 BP; 18 A; 14 C; 12 G; 0 T; 20 other;
cuguagcagc acaucauggu uuacauacua cagucaagau gcgaaucauu auuugcugcu 60
cuag 64
//
ID eca-mir-199a standard; RNA; ECA; 79 BP.
XX
AC MI0012712;
XX
DE Equus caballus miR-199a stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314809; MIR199A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0012960"
FT /product="eca-miR-199a-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0012961"
FT /product="eca-miR-199a-3p"
FT /evidence=not_experimental
XX
SQ Sequence 79 BP; 15 A; 22 C; 21 G; 0 T; 21 other;
gcuccgucgc cccaguguuc agacuaccug uucaggacaa ugccguugua caguagucug 60
cacauugguu agacugggc 79
//
ID eca-mir-214 standard; RNA; ECA; 65 BP.
XX
AC MI0012714;
XX
DE Equus caballus miR-214 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314811; MIR214.
XX
FH Key Location/Qualifiers
FH
FT miRNA 44..65
FT /accession="MIMAT0012963"
FT /product="eca-miR-214"
FT /evidence=not_experimental
XX
SQ Sequence 65 BP; 15 A; 21 C; 15 G; 0 T; 14 other;
ucugccuguc uacacuugcu gugcagaaca uccgcucacc uguacagcag gcacagacag 60
gcagu 65
//
ID eca-mir-148b standard; RNA; ECA; 83 BP.
XX
AC MI0012724;
XX
DE Equus caballus miR-148b stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314816; MIR148B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0012971"
FT /product="eca-miR-148b-5p"
FT /evidence=not_experimental
FT miRNA 52..73
FT /accession="MIMAT0012972"
FT /product="eca-miR-148b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 83 BP; 21 A; 17 C; 20 G; 0 T; 25 other;
agcauuugag gugaaguucu guuauacacu caggcugugg cucucugaaa gucagugcau 60
cacagaacuu ugucucgaaa gcu 83
//
ID eca-mir-26a standard; RNA; ECA; 84 BP.
XX
AC MI0012728;
XX
DE Equus caballus miR-26a stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314818; MIR26A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0012975"
FT /product="eca-miR-26a"
FT /evidence=not_experimental
XX
SQ Sequence 84 BP; 15 A; 16 C; 24 G; 0 T; 29 other;
ggcuguggcu ggauucaagu aauccaggau aggcuguuuc caucugugag gccuauucuu 60
gauuacuugu uucuggaggc agcu 84
//
ID eca-mir-125b standard; RNA; ECA; 88 BP.
XX
AC MI0012733;
XX
DE Equus caballus miR-125b stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314821; MIR125B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0012981"
FT /product="eca-miR-125b-5p"
FT /evidence=not_experimental
XX
SQ Sequence 88 BP; 15 A; 25 C; 22 G; 0 T; 26 other;
ugcgcuccuc ucaaucccug agacccuaac uugugauguu uaccguuuaa auccacgggu 60
uaggcucuug ggagcugcga gucgugcc 88
//
ID eca-mir-34b standard; RNA; ECA; 84 BP.
XX
AC MI0012741;
XX
DE Equus caballus miR-34b stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314972; MIR34B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0012990"
FT /product="eca-miR-34b-5p"
FT /evidence=not_experimental
FT miRNA 51..72
FT /accession="MIMAT0012991"
FT /product="eca-miR-34b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 84 BP; 23 A; 20 C; 18 G; 0 T; 23 other;
gugcucgguu uguaggcagu guaauuagcu gauuguacuc uggagcuuac aaucacuaac 60
uccacugcca ucaaaacaag gcac 84
//
ID eca-mir-34c standard; RNA; ECA; 77 BP.
XX
AC MI0012742;
XX
DE Equus caballus miR-34c stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314826; MIR34C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0012992"
FT /product="eca-miR-34c"
FT /evidence=not_experimental
XX
SQ Sequence 77 BP; 27 A; 15 C; 15 G; 0 T; 20 other;
agucuaguua cuaggcagug uaguuagcug auugcuaaua auaccaauca cuaaccacac 60
ggccagguaa aaagauu 77
//
ID eca-mir-708 standard; RNA; ECA; 93 BP.
XX
AC MI0012745;
XX
DE Equus caballus miR-708 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314827; MIR708.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0012993"
FT /product="eca-miR-708"
FT /evidence=not_experimental
XX
SQ Sequence 93 BP; 25 A; 21 C; 28 G; 0 T; 19 other;
gguaacugcc cucaaggagc uuacaaucua gcugggggua aaugacuugc acaugaacgc 60
aacuagacug ugagcuucua gagggcaggg gcc 93
//
ID eca-mir-151 standard; RNA; ECA; 69 BP.
XX
AC MI0012756;
XX
DE Equus caballus miR-151 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314833; MIR151.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..28
FT /accession="MIMAT0013004"
FT /product="eca-miR-151-5p"
FT /evidence=not_experimental
XX
SQ Sequence 69 BP; 15 A; 22 C; 16 G; 0 T; 16 other;
ccugcccucg aggagcucac agucuaguau gucucauccc cuacuagacu gaagcuccuu 60
gaggacagg 69
//
ID eca-mir-30d standard; RNA; ECA; 71 BP.
XX
AC MI0012758;
XX
DE Equus caballus miR-30d stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314834; MIR30D.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0013006"
FT /product="eca-miR-30d"
FT /evidence=not_experimental
XX
SQ Sequence 71 BP; 16 A; 15 C; 20 G; 0 T; 20 other;
ugugguugua aacauccccg acuggaagcu gugagacaug gcuaagcuuu cagucagaug 60
uuugcugcga c 71
//
ID eca-let-7e standard; RNA; ECA; 79 BP.
XX
AC MI0012759;
XX
DE Equus caballus let-7e stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314974; MIRLET7E.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0013007"
FT /product="eca-let-7e"
FT /evidence=not_experimental
XX
SQ Sequence 79 BP; 17 A; 21 C; 25 G; 0 T; 16 other;
cccgggcuga gguaggaggu uguauaguug aggaggacac ccacggagau cacuauacgg 60
ccuccuagcu uuccccagg 79
//
ID eca-mir-125a standard; RNA; ECA; 68 BP.
XX
AC MI0012760;
XX
DE Equus caballus miR-125a stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314835; MIR125A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..29
FT /accession="MIMAT0013008"
FT /product="eca-miR-125a-5p"
FT /evidence=not_experimental
FT miRNA 44..65
FT /accession="MIMAT0013009"
FT /product="eca-miR-125a-3p"
FT /evidence=not_experimental
XX
SQ Sequence 68 BP; 12 A; 17 C; 23 G; 0 T; 16 other;
cugggucccu gagacccuuu aaccugugag gacauccagg gucacaggug agguucuugg 60
gagccugg 68
//
ID eca-mir-99b standard; RNA; ECA; 70 BP.
XX
AC MI0012767;
XX
DE Equus caballus miR-99b stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314839; MIR99B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0013018"
FT /product="eca-miR-99b"
FT /evidence=not_experimental
XX
SQ Sequence 70 BP; 10 A; 26 C; 21 G; 0 T; 13 other;
ggcacccacc cguagaaccg accuugcggg gccuucgccg cacacaagcu cgugucugug 60
gguccguguc 70
//
ID eca-mir-142 standard; RNA; ECA; 64 BP.
XX
AC MI0012771;
XX
DE Equus caballus miR-142 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100315118; MIR142.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..24
FT /accession="MIMAT0013022"
FT /product="eca-miR-142-5p"
FT /evidence=not_experimental
FT miRNA 40..62
FT /accession="MIMAT0013023"
FT /product="eca-miR-142-3p"
FT /evidence=not_experimental
XX
SQ Sequence 64 BP; 20 A; 12 C; 15 G; 0 T; 17 other;
acccauaaag uagaaagcac uacuaacagc acuggagggu guaguguuuc cuacuuuaug 60
gaug 64
//
ID eca-mir-144 standard; RNA; ECA; 66 BP.
XX
AC MI0012772;
XX
DE Equus caballus miR-144 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100315011; MIR144.
XX
FH Key Location/Qualifiers
FH
FT miRNA 43..62
FT /accession="MIMAT0013024"
FT /product="eca-miR-144"
FT /evidence=not_experimental
XX
SQ Sequence 66 BP; 20 A; 10 C; 16 G; 0 T; 20 other;
ggcugggaua ucaucauaua cuguaaguuu gcgaugagac acuacaguau agaugaugua 60
cuaguc 66
//
ID eca-mir-195 standard; RNA; ECA; 94 BP.
XX
AC MI0012774;
XX
DE Equus caballus miR-195 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100315058; MIR195.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0013027"
FT /product="eca-miR-195"
FT /evidence=not_experimental
XX
SQ Sequence 94 BP; 22 A; 25 C; 28 G; 0 T; 19 other;
acacccagcu ccccuggcuc uagcagcaca gaaauauugg cacugggaag agagucugcc 60
aauauuggcu gugcugcucc aggcagggug guga 94
//
ID eca-mir-21 standard; RNA; ECA; 72 BP.
XX
AC MI0012776;
XX
DE Equus caballus miR-21 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314844; MIR21.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0013029"
FT /product="eca-miR-21"
FT /evidence=not_experimental
XX
SQ Sequence 72 BP; 16 A; 14 C; 21 G; 0 T; 21 other;
ugucggguag cuuaucagac ugauguugac uguugaaucu cauggcaaca gcagucgaug 60
ggcugucuga ca 72
//
ID eca-mir-22 standard; RNA; ECA; 85 BP.
XX
AC MI0012778;
XX
DE Equus caballus miR-22 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314845; MIR22.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0013031"
FT /product="eca-miR-22"
FT /evidence=not_experimental
XX
SQ Sequence 85 BP; 17 A; 24 C; 22 G; 0 T; 22 other;
ggcugagccg caguaguucu ucaguggcaa gcuuuauguc cugacccagc uaaagcugcc 60
aguugaagaa cuguugcccu cugcc 85
//
ID eca-mir-423 standard; RNA; ECA; 63 BP.
XX
AC MI0012784;
XX
DE Equus caballus miR-423 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314848; MIR423.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..27
FT /accession="MIMAT0013039"
FT /product="eca-miR-423-5p"
FT /evidence=not_experimental
FT miRNA 41..63
FT /accession="MIMAT0013040"
FT /product="eca-miR-423-3p"
FT /evidence=not_experimental
XX
SQ Sequence 63 BP; 14 A; 15 C; 19 G; 0 T; 15 other;
aggcugaggg gcagagagcg agacuuuucu auuuuccaaa agcucggucu gaggccccuc 60
agu 63
//
ID eca-mir-129b standard; RNA; ECA; 74 BP.
XX
AC MI0012789;
XX
DE Equus caballus miR-129b stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314977; MIR129B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..27
FT /accession="MIMAT0013045"
FT /product="eca-miR-129b-5p"
FT /evidence=not_experimental
FT miRNA 49..70
FT /accession="MIMAT0013046"
FT /product="eca-miR-129b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 74 BP; 18 A; 21 C; 16 G; 0 T; 19 other;
gcgaaucuuu uugcggucug ggcuugcugu acauaacuca auagccggaa gcccuuaccc 60
caaaaagcau ucgc 74
//
ID eca-mir-143 standard; RNA; ECA; 64 BP.
XX
AC MI0012807;
XX
DE Equus caballus miR-143 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314979; MIR143.
XX
FH Key Location/Qualifiers
FH
FT miRNA 41..61
FT /accession="MIMAT0013063"
FT /product="eca-miR-143"
FT /evidence=not_experimental
XX
SQ Sequence 64 BP; 12 A; 14 C; 23 G; 0 T; 15 other;
gcccgaggug cagugcugca ucucugguca guugggaguc ugagaugaag cacuguagcu 60
cagg 64
//
ID eca-mir-145 standard; RNA; ECA; 70 BP.
XX
AC MI0012808;
XX
DE Equus caballus miR-145 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100315015; MIR145.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0013064"
FT /product="eca-miR-145"
FT /evidence=not_experimental
XX
SQ Sequence 70 BP; 16 A; 16 C; 17 G; 0 T; 21 other;
cucacggucc aguuuuccca ggaaucccuu agaugcuaag auggggauuc cuggaaauac 60
uguucuugag 70
//
ID eca-mir-340 standard; RNA; ECA; 67 BP.
XX
AC MI0012811;
XX
DE Equus caballus miR-340 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100315065; MIR340.
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..24
FT /accession="MIMAT0013066"
FT /product="eca-miR-340-5p"
FT /evidence=not_experimental
FT miRNA 45..67
FT /accession="MIMAT0013067"
FT /product="eca-miR-340-3p"
FT /evidence=not_experimental
XX
SQ Sequence 67 BP; 15 A; 12 C; 17 G; 0 T; 23 other;
gguuauaaag caaugagacu gauugucaug ugucgcuugu gggauccguc ucaguuacuu 60
uauagcc 67
//
ID eca-mir-874 standard; RNA; ECA; 60 BP.
XX
AC MI0012813;
XX
DE Equus caballus miR-874 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314980; MIR874.
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..60
FT /accession="MIMAT0013069"
FT /product="eca-miR-874"
FT /evidence=not_experimental
XX
SQ Sequence 60 BP; 11 A; 23 C; 19 G; 0 T; 7 other;
gcggccccac gcaccagggu aagagagacu cucgcuuccu gcccuggccc gagggaccga 60
//
ID eca-mir-191a standard; RNA; ECA; 74 BP.
XX
AC MI0012825;
XX
DE Equus caballus miR-191 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100315105; MIR191.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0013079"
FT /product="eca-miR-191a"
FT /evidence=not_experimental
XX
SQ Sequence 74 BP; 15 A; 22 C; 19 G; 0 T; 18 other;
agcgggcaac ggaaucccaa aagcagcugu ugucuccaga gcauuccagc ugcgcuugga 60
uuucguuccc ugcu 74
//
ID eca-mir-128-2 standard; RNA; ECA; 70 BP.
XX
AC MI0012838;
XX
DE Equus caballus miR-128-2 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100315070; MIR128-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 44..64
FT /accession="MIMAT0013076"
FT /product="eca-miR-128"
FT /evidence=not_experimental
XX
SQ Sequence 70 BP; 12 A; 16 C; 19 G; 0 T; 23 other;
guuggauucg gggccguagc acugucugag agguuuacau uucucacagu gaaccggucu 60
cuuuuucagc 70
//
ID eca-mir-28 standard; RNA; ECA; 86 BP.
XX
AC MI0012840;
XX
DE Equus caballus miR-28 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314878; MIR28.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0013092"
FT /product="eca-miR-28-5p"
FT /evidence=not_experimental
FT miRNA 54..75
FT /accession="MIMAT0013093"
FT /product="eca-miR-28-3p"
FT /evidence=not_experimental
XX
SQ Sequence 86 BP; 15 A; 24 C; 22 G; 0 T; 25 other;
gguccuugcc cucaaggagc ucacagucua uugaguugcc uuucugacuu ucccacuaga 60
uugugagcuc cuggagggca ggcacu 86
//
ID eca-let-7d standard; RNA; ECA; 87 BP.
XX
AC MI0012859;
XX
DE Equus caballus let-7d stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314889; MIRLET7D.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0013110"
FT /product="eca-let-7d"
FT /evidence=not_experimental
XX
SQ Sequence 87 BP; 22 A; 16 C; 25 G; 0 T; 24 other;
ccuaggaaga gguaguaggu ugcauaguuu uagggcaggg auuuugccca caaggagaua 60
acuauacgac cugcugccuu ucuuagg 87
//
ID eca-mir-27b standard; RNA; ECA; 73 BP.
XX
AC MI0012865;
XX
DE Equus caballus miR-27b stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314892; MIR27B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..69
FT /accession="MIMAT0013114"
FT /product="eca-miR-27b"
FT /evidence=not_experimental
XX
SQ Sequence 73 BP; 14 A; 15 C; 21 G; 0 T; 23 other;
aggugcagag cuuagcugau uggugaacag ugacugguuu ccgcuuuguu cacaguggcu 60
aaguucugca ccu 73
//
ID eca-mir-873 standard; RNA; ECA; 77 BP.
XX
AC MI0012871;
XX
DE Equus caballus miR-873 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100315114; MIR873.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0013120"
FT /product="eca-miR-873"
FT /evidence=not_experimental
XX
SQ Sequence 77 BP; 23 A; 16 C; 20 G; 0 T; 18 other;
gugugcauuu gcaggaacuu gugagucucc uauugaaaau gaacaggaga cugaugaguu 60
cccgggaaca cccacaa 77
//
ID eca-mir-127 standard; RNA; ECA; 70 BP.
XX
AC MI0012876;
XX
DE Equus caballus miR-127 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314898; MIR127.
XX
FH Key Location/Qualifiers
FH
FT miRNA 43..64
FT /accession="MIMAT0013126"
FT /product="eca-miR-127"
FT /evidence=not_experimental
XX
SQ Sequence 70 BP; 14 A; 18 C; 22 G; 0 T; 16 other;
ccagccugcu gaagcucaga gggcucugau ucagaaagau caucggaucc gucugagcuu 60
ggcuggucgg 70
//
ID eca-mir-136 standard; RNA; ECA; 62 BP.
XX
AC MI0012878;
XX
DE Equus caballus miR-136 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314899; MIR136.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0013128"
FT /product="eca-miR-136"
FT /evidence=not_experimental
XX
SQ Sequence 62 BP; 13 A; 14 C; 12 G; 0 T; 23 other;
gaggacucca uuuguuuuga ugauggauuc uuacgcucca ucaucgucuc aaaugagucu 60
uc 62
//
ID eca-mir-299 standard; RNA; ECA; 63 BP.
XX
AC MI0012880;
XX
DE Equus caballus miR-299 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100315022; MIR299.
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..60
FT /accession="MIMAT0013130"
FT /product="eca-miR-299"
FT /evidence=not_experimental
XX
SQ Sequence 63 BP; 17 A; 11 C; 14 G; 0 T; 21 other;
aagaaauggu uuaccguccc acauacauuu ugaguaugua ugugggaugg uaaaccgcuu 60
cuu 63
//
ID eca-mir-342 standard; RNA; ECA; 99 BP.
XX
AC MI0012884;
XX
DE Equus caballus miR-342 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314902; MIR342.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0013136"
FT /product="eca-miR-342-5p"
FT /evidence=not_experimental
FT miRNA 61..83
FT /accession="MIMAT0013137"
FT /product="eca-miR-342-3p"
FT /evidence=not_experimental
XX
SQ Sequence 99 BP; 25 A; 25 C; 28 G; 0 T; 21 other;
gaaccugggc ucaaggugag gggugcuauc ugugauugag ggacauggca aauagaauug 60
ucucacacag aaaucgcacc cgucaccuug gcccgccua 99
//
ID eca-mir-369 standard; RNA; ECA; 70 BP.
XX
AC MI0012886;
XX
DE Equus caballus miR-369 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314903; MIR369.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0013140"
FT /product="eca-miR-369-5p"
FT /evidence=not_experimental
FT miRNA 44..64
FT /accession="MIMAT0013141"
FT /product="eca-miR-369-3p"
FT /evidence=not_experimental
XX
SQ Sequence 70 BP; 16 A; 12 C; 16 G; 0 T; 26 other;
uugaagggag aucgaccgug ucauauucgc uuuauugacu ucgaauaaua caugguugau 60
cuuuucucgg 70
//
ID eca-mir-377 standard; RNA; ECA; 69 BP.
XX
AC MI0012891;
XX
DE Equus caballus miR-377 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100315108; MIR377.
XX
FH Key Location/Qualifiers
FH
FT miRNA 45..66
FT /accession="MIMAT0013146"
FT /product="eca-miR-377"
FT /evidence=not_experimental
XX
SQ Sequence 69 BP; 16 A; 11 C; 16 G; 0 T; 26 other;
uugagcagag guugcccuug gugaauucgc uuuauuuaug uugaaucaca caaaggcaac 60
uuuuguuug 69
//
ID eca-mir-379 standard; RNA; ECA; 67 BP.
XX
AC MI0012892;
XX
DE Equus caballus miR-379 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314906; MIR379.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0013147"
FT /product="eca-miR-379"
FT /evidence=not_experimental
XX
SQ Sequence 67 BP; 19 A; 11 C; 15 G; 0 T; 22 other;
agagauggua gacuauggaa cguaggcuuu augauuuuug accuauguaa caugguccac 60
uaacucu 67
//
ID eca-mir-382 standard; RNA; ECA; 76 BP.
XX
AC MI0012895;
XX
DE Equus caballus miR-382 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314908; MIR382.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0013150"
FT /product="eca-miR-382"
FT /evidence=not_experimental
XX
SQ Sequence 76 BP; 20 A; 13 C; 16 G; 0 T; 27 other;
uacuugaaga gaaguuguuc gugguggauu cgcuuuacuu augacgaauc auucacggac 60
aacacuuuuu ucagua 76
//
ID eca-mir-409 standard; RNA; ECA; 79 BP.
XX
AC MI0012896;
XX
DE Equus caballus miR-409 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314909; MIR409.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0013151"
FT /product="eca-miR-409-5p"
FT /evidence=not_experimental
FT miRNA 47..68
FT /accession="MIMAT0013152"
FT /product="eca-miR-409-3p"
FT /evidence=not_experimental
XX
SQ Sequence 79 BP; 16 A; 19 C; 23 G; 0 T; 21 other;
ugguacucgg ggagagguua cccgagcaac uuugcaucug gacgacgaau guugcucggu 60
gaaccccuuu ucgguauca 79
//
ID eca-mir-411 standard; RNA; ECA; 82 BP.
XX
AC MI0012898;
XX
DE Equus caballus miR-411 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314910; MIR411.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0013154"
FT /product="eca-miR-411"
FT /evidence=not_experimental
XX
SQ Sequence 82 BP; 22 A; 18 C; 19 G; 0 T; 23 other;
ugguacuugg agagauagua gaccguauag cguacgcuuu aucugugacg uauguaacac 60
gguccacuaa cccucaguau ca 82
//
ID eca-mir-431 standard; RNA; ECA; 89 BP.
XX
AC MI0012900;
XX
DE Equus caballus miR-431 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100315081; MIR431.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0013156"
FT /product="eca-miR-431"
FT /evidence=not_experimental
XX
SQ Sequence 89 BP; 16 A; 26 C; 28 G; 0 T; 19 other;
cguccugcga ggugucuugc aggccgucau gcaggccaca cugacgguaa cguugcaggu 60
cgucuugcag ggcuucucgc aagacgaca 89
//
ID eca-mir-485 standard; RNA; ECA; 73 BP.
XX
AC MI0012903;
XX
DE Equus caballus miR-485 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314991; MIR485.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0013159"
FT /product="eca-miR-485-5p"
FT /evidence=not_experimental
FT miRNA 46..67
FT /accession="MIMAT0013160"
FT /product="eca-miR-485-3p"
FT /evidence=not_experimental
XX
SQ Sequence 73 BP; 18 A; 17 C; 17 G; 0 T; 21 other;
acuugaagag aggcuggccg ugaugaauuc gauucaucaa agcgagucau acacggcucu 60
ccucucuuuu agu 73
//
ID eca-mir-126 standard; RNA; ECA; 73 BP.
XX
AC MI0012919;
XX
DE Equus caballus miR-126 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100315085; MIR126.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0013176"
FT /product="eca-miR-126-5p"
FT /evidence=not_experimental
FT miRNA 46..67
FT /accession="MIMAT0013177"
FT /product="eca-miR-126-3p"
FT /evidence=not_experimental
XX
SQ Sequence 73 BP; 17 A; 18 C; 18 G; 0 T; 20 other;
cgacgggaca uuauuacuuu ugguacgcgc ugugacacuu caaacucgua ccgugaguaa 60
uaaugcgccg ucg 73
//
ID eca-mir-199b standard; RNA; ECA; 69 BP.
XX
AC MI0012922;
XX
DE Equus caballus miR-199b stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314922; MIR199B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0013780"
FT /product="eca-miR-199b-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0013781"
FT /product="eca-miR-199b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 69 BP; 16 A; 16 C; 15 G; 0 T; 22 other;
gucuacccag uguuuagacu aucuguucag gacucccaaa uuguacagua gucugcacau 60
ugguuaggc 69
//
ID eca-mir-125b-2 standard; RNA; ECA; 70 BP.
XX
AC MI0012926;
XX
DE Equus caballus miR-125b-2 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314924; MIR125B-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0012981"
FT /product="eca-miR-125b-5p"
FT /evidence=not_experimental
XX
SQ Sequence 70 BP; 16 A; 18 C; 17 G; 0 T; 19 other;
ccuagucccu gagacccuaa cuugugaggu auuuugguaa caucacaagu caggcucuug 60
ggaccuaggc 70
//
ID eca-mir-99a-2 standard; RNA; ECA; 81 BP.
XX
AC MI0012929;
XX
DE Equus caballus miR-99a-2 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314926; MIR99A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0013184"
FT /product="eca-miR-99a"
FT /evidence=not_experimental
XX
SQ Sequence 81 BP; 16 A; 20 C; 22 G; 0 T; 23 other;
cccauuggca uaaacccgua gauccgaucu uguggugaag uggaccucac aagcucgcuu 60
cuaugggucu gugucagugu g 81
//
ID eca-let-7a-2 standard; RNA; ECA; 74 BP.
XX
AC MI0012932;
XX
DE Equus caballus let-7a-2 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100315027; MIRLET7A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0012979"
FT /product="eca-let-7a"
FT /evidence=not_experimental
XX
SQ Sequence 74 BP; 13 A; 13 C; 22 G; 0 T; 26 other;
gggugaggua guagguugua uaguuugggg cucugcccug cuauggggua acuauacaau 60
cuacugucuu uccu 74
//
ID eca-mir-331 standard; RNA; ECA; 92 BP.
XX
AC MI0012934;
XX
DE Equus caballus miR-331 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314928; MIR331.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..81
FT /accession="MIMAT0013188"
FT /product="eca-miR-331"
FT /evidence=not_experimental
XX
SQ Sequence 92 BP; 21 A; 23 C; 22 G; 0 T; 26 other;
gaauuugguu uuguuugggu uuguucuagg uaugguccca gggaucccag aucaaaccag 60
gccccugggc cuauccuaga accaaccuaa ac 92
//
ID eca-mir-181a-2 standard; RNA; ECA; 110 BP.
XX
AC MI0012936;
XX
DE Equus caballus miR-181a-2 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100315088; MIR181A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0013178"
FT /product="eca-miR-181a"
FT /evidence=not_experimental
XX
SQ Sequence 110 BP; 25 A; 27 C; 26 G; 0 T; 32 other;
ugagucugag gguugcuuca gugaacauuc aacgcugucg gugaguuugg aauuaaaauc 60
aaaaccaucg accguugauu gugcccugug gcuagccauc cucuccucca 110
//
ID eca-mir-221 standard; RNA; ECA; 110 BP.
XX
AC MI0012951;
XX
DE Equus caballus miR-221 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314997; MIR221.
XX
FH Key Location/Qualifiers
FH
FT miRNA 65..87
FT /accession="MIMAT0013203"
FT /product="eca-miR-221"
FT /evidence=not_experimental
XX
SQ Sequence 110 BP; 24 A; 26 C; 27 G; 0 T; 33 other;
ccaacaucca ggucuggggc augaaccugg cauacaaugu agauuucugu guuucuuggg 60
caacagcuac auugucugcu ggguuucagg cuaccuggaa acauguucuc 110
//
ID eca-mir-361 standard; RNA; ECA; 71 BP.
XX
AC MI0012956;
XX
DE Equus caballus miR-361 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314941; MIR361.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0013208"
FT /product="eca-miR-361-5p"
FT /evidence=not_experimental
FT miRNA 44..66
FT /accession="MIMAT0013209"
FT /product="eca-miR-361-3p"
FT /evidence=not_experimental
XX
SQ Sequence 71 BP; 18 A; 15 C; 16 G; 0 T; 22 other;
ggagcuuauc agaaucucca gggguacuga uaauuuuaaa aaguccccca ggcgugauuc 60
ugauuugcuu c 71
//
ID eca-mir-374a standard; RNA; ECA; 72 BP.
XX
AC MI0012959;
XX
DE Equus caballus miR-374a stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314942; MIR374A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0013213"
FT /product="eca-miR-374a"
FT /evidence=not_experimental
XX
SQ Sequence 72 BP; 21 A; 12 C; 13 G; 0 T; 26 other;
uacaucggcc auuauaauac aaccugauaa guguuacagc acuuaucagg uuguauugua 60
auugucugug ua 72
//
ID eca-mir-424 standard; RNA; ECA; 98 BP.
XX
AC MI0012963;
XX
DE Equus caballus miR-424 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100315111; MIR424.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0013217"
FT /product="eca-miR-424"
FT /evidence=not_experimental
XX
SQ Sequence 98 BP; 24 A; 18 C; 34 G; 0 T; 22 other;
cgaggggaug cagcagcaau ucauguuuug aagugauuua aacgguucaa aacgugaggc 60
gcugcuauac ccccucgcgg ggaaguugga aggugggg 98
//
ID eca-mir-502 standard; RNA; ECA; 80 BP.
XX
AC MI0012971;
XX
DE Equus caballus miR-502 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314950; MIR502.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0013225"
FT /product="eca-miR-502-5p"
FT /evidence=not_experimental
FT miRNA 52..73
FT /accession="MIMAT0013226"
FT /product="eca-miR-502-3p"
FT /evidence=not_experimental
XX
SQ Sequence 80 BP; 15 A; 22 C; 21 G; 0 T; 22 other;
ugcucccccu cucuaauccu ugcuaucugg gugcuagugc ugucucaaug caaugcaccu 60
gggcaaggau ucagagaggg 80
//
ID eca-mir-508 standard; RNA; ECA; 117 BP.
XX
AC MI0012976;
XX
DE Equus caballus miR-508 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314953; MIR508.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..49
FT /accession="MIMAT0013231"
FT /product="eca-miR-508-5p"
FT /evidence=not_experimental
FT miRNA 62..84
FT /accession="MIMAT0013232"
FT /product="eca-miR-508-3p"
FT /evidence=not_experimental
XX
SQ Sequence 117 BP; 31 A; 25 C; 29 G; 0 T; 32 other;
accacucuca gcugggugua gugcccuacu ccagagggug ucauucacau agacuaaagc 60
augauuguca ccuuuuggag uagaguaaua cacaucaugg acgauauaug ugguggc 117
//
ID eca-mir-509a standard; RNA; ECA; 98 BP.
XX
AC MI0012977;
XX
DE Equus caballus miR-509 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314954; MIR509.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..40
FT /accession="MIMAT0013233"
FT /product="eca-miR-509a-5p"
FT /evidence=not_experimental
XX
SQ Sequence 98 BP; 33 A; 19 C; 20 G; 0 T; 26 other;
cauacugugu gugguacccu acugcagaca guggcaauca uguauaauua aaaaugauug 60
acaccucugc aaguguagua acacaugaca caugagau 98
//
ID eca-mir-532 standard; RNA; ECA; 90 BP.
XX
AC MI0012979;
XX
DE Equus caballus miR-532 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314955; MIR532.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0013235"
FT /product="eca-miR-532-5p"
FT /evidence=not_experimental
FT miRNA 56..77
FT /accession="MIMAT0013236"
FT /product="eca-miR-532-3p"
FT /evidence=not_experimental
XX
SQ Sequence 90 BP; 18 A; 26 C; 20 G; 0 T; 26 other;
gauuugcuuu cucucuuaca ugccuugagu guaggaccgu uggcaucuua auuacccucc 60
cacacccaag gcuugcagga gggcaagccu 90
//
ID eca-mir-542 standard; RNA; ECA; 86 BP.
XX
AC MI0012980;
XX
DE Equus caballus miR-542 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100315117; MIR542.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0013237"
FT /product="eca-miR-542-5p"
FT /evidence=not_experimental
FT miRNA 53..74
FT /accession="MIMAT0013238"
FT /product="eca-miR-542-3p"
FT /evidence=not_experimental
XX
SQ Sequence 86 BP; 24 A; 20 C; 23 G; 0 T; 19 other;
aggaccucag acaucucggg gaucaucaug ucacgagaua ccacugugca cuugugacag 60
auugauaacu gaaaggucug ggagcc 86
//
ID eca-mir-545 standard; RNA; ECA; 106 BP.
XX
AC MI0012981;
XX
DE Equus caballus miR-545 stem-loop
XX
RN [1]
RX PUBMED; 19406225.
RA Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He
RA T, Zheng Y;
RT "In silico detection and characteristics of novel microRNA genes in the
RT Equus caballus genome using an integrated ab initio and comparative
RT genomic approach";
RL Genomics. 94:125-131(2009).
XX
DR ENTREZGENE; 100314956; MIR545.
XX
FH Key Location/Qualifiers
FH
FT miRNA 63..84
FT /accession="MIMAT0013239"
FT /product="eca-miR-545"
FT /evidence=not_experimental
XX
SQ Sequence 106 BP; 32 A; 23 C; 21 G; 0 T; 30 other;
cccagccugg cacauuagua ggccucagua aauguuuauu ggaugaauaa augaaugacu 60
caucaacaaa cauuuauugu gugccugcua acgugaucuc cacagg 106
//
ID ssc-mir-30e standard; RNA; SSC; 80 BP.
XX
AC MI0013092;
XX
DE Sus scrofa miR-30e stem-loop
XX
RN [1]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [2]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [4]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100498760; MIR30E.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..32
FT /accession="MIMAT0013872"
FT /product="ssc-miR-30e-5p"
FT /evidence=experimental
FT /experiment="Illumina [1,3-4], cloned [2]"
FT miRNA 51..72
FT /accession="MIMAT0013873"
FT /product="ssc-miR-30e-3p"
FT /evidence=experimental
FT /experiment="Illumina [1,3-4], cloned [2]"
XX
SQ Sequence 80 BP; 16 A; 19 C; 23 G; 0 T; 22 other;
uuugccacug uaaacauccu ugacuggaag cugugaggcg uucccaggag cuuucagucg 60
gauguuuaca gcggcaggcu 80
//
ID ssc-mir-199a-2 standard; RNA; SSC; 80 BP.
XX
AC MI0013093;
XX
DE Sus scrofa miR-199a-2 stem-loop
XX
RN [1]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [2]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [4]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100498706; MIR199A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..32
FT /accession="MIMAT0013874"
FT /product="ssc-miR-199a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1,3], cloned [2]"
FT miRNA 51..72
FT /accession="MIMAT0013875"
FT /product="ssc-miR-199a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1,3-4], cloned [2]"
XX
SQ Sequence 80 BP; 15 A; 22 C; 23 G; 0 T; 20 other;
ccccgccaac ccaguguuca gacuaccugu ucagggggcu cugaaugugu acaguagucu 60
gcacauuggu uaggcugggc 80
//
ID ssc-mir-143 standard; RNA; SSC; 80 BP.
XX
AC MI0013098;
XX
DE Sus scrofa miR-143 stem-loop
XX
RN [1]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [2]
RX PUBMED; 20433717.
RA Sharbati S, Friedlander MR, Sharbati J, Hoeke L, Chen W, Keller A, Stahler
RA PF, Rajewsky N, Einspanier R;
RT "Deciphering the porcine intestinal microRNA transcriptome";
RL BMC Genomics. 11:275(2010).
XX
RN [3]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [4]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [5]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100498761; MIR143.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0017374"
FT /product="ssc-miR-143-5p"
FT /evidence=experimental
FT /experiment="Illumina [2,4-5]"
FT miRNA 49..69
FT /accession="MIMAT0013879"
FT /product="ssc-miR-143-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2,4-5], cloned [3]"
XX
SQ Sequence 80 BP; 16 A; 19 C; 30 G; 0 T; 15 other;
gucccccagc cggaggugca gugcugcauc ucuggucagc ugggagucug agaugaagca 60
cuguagcucg ggaagggaga 80
//
ID ssc-mir-423 standard; RNA; SSC; 80 BP.
XX
AC MI0013099;
XX
DE Sus scrofa miR-423 stem-loop
XX
RN [1]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [2]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [3]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100498709; MIR423.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..32
FT /accession="MIMAT0013880"
FT /product="ssc-miR-423-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-3]"
FT miRNA 46..68
FT /accession="MIMAT0013881"
FT /product="ssc-miR-423-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-3]"
XX
SQ Sequence 80 BP; 17 A; 20 C; 21 G; 0 T; 22 other;
aaguuaggcu gaggggcaga gagcgagacu uuucuauuuu ccaaaagcuc ggucugaggc 60
cccucagucu ugcuuccuac 80
//
ID ssc-mir-151 standard; RNA; SSC; 80 BP.
XX
AC MI0013100;
XX
DE Sus scrofa miR-151 stem-loop
XX
RN [1]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [2]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [3]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100498710; MIR151.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0013882"
FT /product="ssc-miR-151-5p"
FT /evidence=experimental
FT /experiment="Illumina [1,3], cloned [2]"
FT miRNA 48..69
FT /accession="MIMAT0013883"
FT /product="ssc-miR-151-3p"
FT /evidence=experimental
FT /experiment="Illumina [1,3], cloned [2]"
XX
SQ Sequence 80 BP; 16 A; 25 C; 18 G; 0 T; 21 other;
uuuuccugcc cucgaggagc ucacagucua guacgucuca uccccuacua gacugaagcu 60
ccuugaggac agggaucguc 80
//
ID ssc-mir-27b standard; RNA; SSC; 80 BP.
XX
AC MI0013109;
XX
DE Sus scrofa miR-27b stem-loop
XX
RN [1]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [2]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [4]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100498715; MIR27B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..32
FT /accession="MIMAT0013889"
FT /product="ssc-miR-27b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1,3-4]"
FT miRNA 52..72
FT /accession="MIMAT0013890"
FT /product="ssc-miR-27b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1,3-4], cloned [2]"
XX
SQ Sequence 80 BP; 17 A; 16 C; 24 G; 0 T; 23 other;
acgaggugca gagcuuagcu gauuggugaa cagugacugg uuuccgcuuu guucacagug 60
gcuaaguucu gcaccugaag 80
//
ID ssc-mir-99a standard; RNA; SSC; 80 BP.
XX
AC MI0013114;
XX
DE Sus scrofa miR-99a stem-loop
XX
RN [1]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [2]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [4]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
RN [5]
RX PUBMED; 25230983.
RA Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M;
RT "The characteristics of the porcine (Sus scrofa) liver miRNAome with the
RT use of next generation sequencing";
RL J Appl Genet. 56:239-252(2015).
XX
DR ENTREZGENE; 100498717; MIR99A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0013896"
FT /product="ssc-miR-99a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1,3-4], cloned [2]"
FT miRNA 49..69
FT /accession="MIMAT0037365"
FT /product="ssc-miR-99a-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 80 BP; 16 A; 19 C; 23 G; 0 T; 22 other;
ccauuggcau aaacccguag auccgaucuu guggugaagu ggaccgcaca agcucgcuuc 60
uaugggucug ugucagugug 80
//
ID ssc-mir-365-2 standard; RNA; SSC; 80 BP.
XX
AC MI0013120;
XX
DE Sus scrofa miR-365-2 stem-loop
XX
RN [1]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [2]
RX PUBMED; 20433717.
RA Sharbati S, Friedlander MR, Sharbati J, Hoeke L, Chen W, Keller A, Stahler
RA PF, Rajewsky N, Einspanier R;
RT "Deciphering the porcine intestinal microRNA transcriptome";
RL BMC Genomics. 11:275(2010).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [4]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100498721; MIR365-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0017376"
FT /product="ssc-miR-365-5p"
FT /evidence=experimental
FT /experiment="Illumina [2-4]"
FT miRNA 47..68
FT /accession="MIMAT0013904"
FT /product="ssc-miR-365-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-4]"
XX
SQ Sequence 80 BP; 21 A; 16 C; 17 G; 0 T; 26 other;
aaaaaugagg gacuuucagg ggcagcugug uuuucugacu cagucauaau gccccuaaaa 60
auccuuauug uucuugcagu 80
//
ID ssc-mir-374a standard; RNA; SSC; 80 BP.
XX
AC MI0013130;
XX
DE Sus scrofa miR-374a stem-loop
XX
RN [1]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [2]
RX PUBMED; 20433717.
RA Sharbati S, Friedlander MR, Sharbati J, Hoeke L, Chen W, Keller A, Stahler
RA PF, Rajewsky N, Einspanier R;
RT "Deciphering the porcine intestinal microRNA transcriptome";
RL BMC Genomics. 11:275(2010).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [4]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100498726; MIR374A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0013913"
FT /product="ssc-miR-374a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-4]"
FT miRNA 40..61
FT /accession="MIMAT0013914"
FT /product="ssc-miR-374a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-3]"
XX
SQ Sequence 80 BP; 23 A; 14 C; 14 G; 0 T; 29 other;
caucggccau uauaauacaa ccugauaagu guuacagcac uuaucagguu guauuguaau 60
ugucugugua uauauaugcc 80
//
ID ssc-mir-425 standard; RNA; SSC; 80 BP.
XX
AC MI0013133;
XX
DE Sus scrofa miR-425 stem-loop
XX
RN [1]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [2]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100498728; MIR425.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..34
FT /accession="MIMAT0013917"
FT /product="ssc-miR-425-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 53..74
FT /accession="MIMAT0013918"
FT /product="ssc-miR-425-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
XX
SQ Sequence 80 BP; 17 A; 22 C; 23 G; 0 T; 18 other;
aagugcuuug gaaugacacg aucacucccg uugagugggc acccaaguag ccaucgggaa 60
ugucgugucc gcccagugcu 80
//
ID ssc-mir-142 standard; RNA; SSC; 80 BP.
XX
AC MI0013134;
XX
DE Sus scrofa miR-142 stem-loop
XX
RN [1]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [2]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [3]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100498767; MIR142.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0013919"
FT /product="ssc-miR-142-5p"
FT /evidence=experimental
FT /experiment="Illumina [1,3]"
FT miRNA 48..69
FT /accession="MIMAT0020362"
FT /product="ssc-miR-142-3p"
FT /evidence=experimental
FT /experiment="Illumina [2-3]"
XX
SQ Sequence 80 BP; 23 A; 15 C; 20 G; 0 T; 22 other;
gugcagucac ccauaaagua gaaagcacua cuaacagcac uggagggugu aguguuuccu 60
acuuuaugga ugaguguacu 80
//
ID ssc-mir-542 standard; RNA; SSC; 80 BP.
XX
AC MI0013138;
XX
DE Sus scrofa miR-542 stem-loop
XX
RN [1]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [2]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
DR ENTREZGENE; 100498731; MIR542.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0013924"
FT /product="ssc-miR-542-5p"
FT /evidence=experimental
FT /experiment="Illumina [1,3]"
FT miRNA 49..70
FT /accession="MIMAT0013925"
FT /product="ssc-miR-542-3p"
FT /evidence=experimental
FT /experiment="Illumina [1,3], cloned [2]"
XX
SQ Sequence 80 BP; 21 A; 18 C; 23 G; 0 T; 18 other;
ccucagacgu cucggggauc aucaugucac gagagaccac ugugcacuug ugacagauug 60
auaacugaaa ggucugggag 80
//
ID ssc-mir-708 standard; RNA; SSC; 80 BP.
XX
AC MI0013154;
XX
DE Sus scrofa miR-708 stem-loop
XX
RN [1]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [2]
RX PUBMED; 20433717.
RA Sharbati S, Friedlander MR, Sharbati J, Hoeke L, Chen W, Keller A, Stahler
RA PF, Rajewsky N, Einspanier R;
RT "Deciphering the porcine intestinal microRNA transcriptome";
RL BMC Genomics. 11:275(2010).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
DR ENTREZGENE; 100498793; MIR708.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0013945"
FT /product="ssc-miR-708-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-3]"
FT miRNA 52..74
FT /accession="MIMAT0017383"
FT /product="ssc-miR-708-3p"
FT /evidence=experimental
FT /experiment="Illumina [2-3]"
XX
SQ Sequence 80 BP; 22 A; 18 C; 23 G; 0 T; 17 other;
cccucaagga gcuuacaauc uagcuggggg ugaaugacuu gcacaugaac gcaacuagac 60
ugugagcuuc uagagggcag 80
//
ID ssc-mir-202 standard; RNA; SSC; 80 BP.
XX
AC MI0013157;
XX
DE Sus scrofa miR-202 stem-loop
XX
RN [1]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [2]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
DR ENTREZGENE; 100498744; MIR202.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0013948"
FT /product="ssc-miR-202-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 49..67
FT /accession="MIMAT0022956"
FT /product="ssc-miR-202-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 80 BP; 15 A; 20 C; 26 G; 0 T; 19 other;
cgccguuccg ccuuccuaug cauauacuuc uuugaggguc uggccugaag agguguaggc 60
augggaaacc ggggcgacga 80
//
ID ssc-mir-574 standard; RNA; SSC; 80 BP.
XX
AC MI0013161;
XX
DE Sus scrofa miR-574 stem-loop
XX
RN [1]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [2]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [4]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
RN [5]
RX PUBMED; 25230983.
RA Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M;
RT "The characteristics of the porcine (Sus scrofa) liver miRNAome with the
RT use of next generation sequencing";
RL J Appl Genet. 56:239-252(2015).
XX
DR ENTREZGENE; 100498746; MIR574.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0037367"
FT /product="ssc-miR-574-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 51..72
FT /accession="MIMAT0013951"
FT /product="ssc-miR-574-3p"
FT /evidence=experimental
FT /experiment="Illumina [1,3-4], cloned [2]"
XX
SQ Sequence 80 BP; 10 A; 23 C; 29 G; 0 T; 18 other;
ugggugcggg cgugugagug ugugugugug aguguguguc gcuccggguc cacgcucaug 60
cacacaccca cacgcccgca 80
//
ID ssc-mir-500 standard; RNA; SSC; 80 BP.
XX
AC MI0013166;
XX
DE Sus scrofa miR-500 stem-loop
XX
RN [1]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [2]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [3]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
RN [4]
RX PUBMED; 25230983.
RA Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M;
RT "The characteristics of the porcine (Sus scrofa) liver miRNAome with the
RT use of next generation sequencing";
RL J Appl Genet. 56:239-252(2015).
XX
DR ENTREZGENE; 100498777; MIR500.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0037369"
FT /product="ssc-miR-500-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 48..68
FT /accession="MIMAT0013956"
FT /product="ssc-miR-500-3p"
FT /evidence=experimental
FT /experiment="Illumina [1,3], cloned [2]"
XX
SQ Sequence 80 BP; 17 A; 19 C; 24 G; 0 T; 20 other;
ccccucucua auccuugcua ccugggugag agugcugugu gaaugcaaug caccugggca 60
aggauucuga gagugagagc 80
//
ID ssc-mir-455 standard; RNA; SSC; 80 BP.
XX
AC MI0013170;
XX
DE Sus scrofa miR-455 stem-loop
XX
RN [1]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [2]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [3]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100498752; MIR455.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0022957"
FT /product="ssc-miR-455-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 50..70
FT /accession="MIMAT0013960"
FT /product="ssc-miR-455-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-3]"
XX
SQ Sequence 80 BP; 18 A; 20 C; 23 G; 0 T; 19 other;
uggcgugagg guaugugccu uuggacuaca ucguggaagc cagcaccaug caguccaugg 60
gcauauacac uugccucaag 80
//
ID zma-MIR156l standard; RNA; ZMA; 90 BP.
XX
AC MI0013184;
XX
DE Zea mays miR156l stem-loop
XX
RN [1]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..21
FT /accession="MIMAT0013973"
FT /product="zma-miR156l-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 68..89
FT /accession="MIMAT0015308"
FT /product="zma-miR156l-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 90 BP; 16 A; 29 C; 32 G; 0 T; 13 other;
gugacagaag agagugagca cacggccggg cggaacggca ccggcggaug ugccgucgcg 60
gccgcgugcu cacugcucua ucugucaccc 90
//
ID zma-MIR159f standard; RNA; ZMA; 215 BP.
XX
AC MI0013186;
XX
DE Zea mays miR159f stem-loop
XX
RN [1]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..22
FT /accession="MIMAT0015310"
FT /product="zma-miR159f-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 194..214
FT /accession="MIMAT0013975"
FT /product="zma-miR159f-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 215 BP; 35 A; 56 C; 63 G; 0 T; 61 other;
ggagcuccuc ucauuccaau gaaggguccu uccgaagggu gguuccgcug cucguucaug 60
guucccacua uccuaucuca uccauguuug cgugucuucg agaggaagcg gaagagauuc 120
cuguggucgc cuuuugagau aggcuugugg uuugcaugac cgaggagcug caccgacccc 180
gugcuggccg cucuuuggau ugaagggagc ucugc 215
//
ID zma-MIR160g standard; RNA; ZMA; 86 BP.
XX
AC MI0013192;
XX
DE Zea mays miR160g stem-loop
XX
RN [1]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..22
FT /accession="MIMAT0013981"
FT /product="zma-miR160g-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 65..85
FT /accession="MIMAT0015316"
FT /product="zma-miR160g-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 86 BP; 17 A; 22 C; 27 G; 0 T; 20 other;
augccuggcu cccuguaugc cacacaugua gcccaacccg ugaugugauu ggaugcugug 60
gguggcgugc aaggagccaa gcaugu 86
//
ID zma-MIR166n standard; RNA; ZMA; 96 BP.
XX
AC MI0013197;
XX
DE Zea mays miR166n stem-loop
XX
RN [1]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..22
FT /accession="MIMAT0015321"
FT /product="zma-miR166n-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 75..95
FT /accession="MIMAT0013986"
FT /product="zma-miR166n-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 96 BP; 11 A; 28 C; 33 G; 0 T; 24 other;
gggauuguug ucuggcucgg ugucuccggu cgagayggcc uugccggcgc cggagcuguc 60
gucgaccgga gaucucggac caggcuucaa ucccuu 96
//
ID zma-MIR167j standard; RNA; ZMA; 109 BP.
XX
AC MI0013198;
XX
DE Zea mays miR167j stem-loop
XX
RN [1]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..22
FT /accession="MIMAT0013987"
FT /product="zma-miR167j-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 89..108
FT /accession="MIMAT0015322"
FT /product="zma-miR167j-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 109 BP; 29 A; 22 C; 26 G; 0 T; 32 other;
augaagcugc cagcaugauc ugaaaccaua cguguucuuu gauucccauc ugaagaaaga 60
guuggcuuuc auggagaacc gacggucaga ucauguggca guuucauuu 109
//
ID zma-MIR171l standard; RNA; ZMA; 78 BP.
XX
AC MI0013206;
XX
DE Zea mays miR171l stem-loop
XX
RN [1]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..22
FT /accession="MIMAT0015330"
FT /product="zma-miR171l-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 57..77
FT /accession="MIMAT0013995"
FT /product="zma-miR171l-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 78 BP; 13 A; 20 C; 25 G; 0 T; 20 other;
guauuggcgu gccucaaucc gaaggcgugg cugacuggcg cggcagccau guucuuggau 60
ugagccgcgu caauaucu 78
//
ID zma-MIR390a standard; RNA; ZMA; 181 BP.
XX
AC MI0013209;
XX
DE Zea mays miR390a stem-loop
XX
RN [1]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..22
FT /accession="MIMAT0013998"
FT /product="zma-miR390a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 160..180
FT /accession="MIMAT0015333"
FT /product="zma-miR390a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 181 BP; 49 A; 38 C; 51 G; 0 T; 43 other;
gaagcucagg agggauagcg ccuaggaaaa cacauagauc ggagccggcc gcgaggagaa 60
agaaagagcc aagagauaug ugugaugaau aaucuacaug gaucuuggcu agcuuuugug 120
uucuccucug gaggcguggu ucugucuauc aaucugaagc gcuaucuauc cugagcucca 180
c 181
//
ID zma-MIR396e standard; RNA; ZMA; 166 BP.
XX
AC MI0013225;
XX
DE Zea mays miR396e stem-loop
XX
RN [1]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..22
FT /accession="MIMAT0014014"
FT /product="zma-miR396e-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 145..165
FT /accession="MIMAT0015349"
FT /product="zma-miR396e-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 166 BP; 34 A; 49 C; 26 G; 0 T; 57 other;
uuuccacagc uuucuugaac uucuucuucu ucucucucuu agaagggccg uauagcuucu 60
uugaaccucu cucucucucu cucucaaaag uguacacgaa cacuuucuuc auucucugcc 120
ucucgcucuc ugaucuccga agaaggucaa gaaagccgug ggaaga 166
//
ID zma-MIR396f standard; RNA; ZMA; 117 BP.
XX
AC MI0013226;
XX
DE Zea mays miR396f stem-loop
XX
RN [1]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..22
FT /accession="MIMAT0014015"
FT /product="zma-miR396f-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 96..116
FT /accession="MIMAT0015350"
FT /product="zma-miR396f-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 117 BP; 23 A; 32 C; 21 G; 0 T; 41 other;
uuuccacagc uuucuugaac uucuucuucu ucuucucucu uggaacggca gcuuucuucg 60
aaucugucuc ucucucucuc aucuccgaag acgaagguca agaaagcugu gggaaga 117
//
ID zma-MIR399h standard; RNA; ZMA; 94 BP.
XX
AC MI0013234;
XX
DE Zea mays miR399h stem-loop
XX
RN [1]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..22
FT /accession="MIMAT0015357"
FT /product="zma-miR399h-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 73..93
FT /accession="MIMAT0014023"
FT /product="zma-miR399h-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 94 BP; 19 A; 33 C; 24 G; 0 T; 18 other;
agugcaguuc uccucuggca cgaaccaagg cugagcagcu ugccccaugg cuagcccacg 60
acggcccuuc cuugccaaag gagaauugcc cugc 94
//
ID zma-MIR399i standard; RNA; ZMA; 91 BP.
XX
AC MI0013235;
XX
DE Zea mays miR399i stem-loop
XX
RN [1]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..22
FT /accession="MIMAT0015358"
FT /product="zma-miR399i-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 70..90
FT /accession="MIMAT0014024"
FT /product="zma-miR399i-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 91 BP; 17 A; 27 C; 28 G; 0 T; 19 other;
agugcggcuc uccucuggca ugagggcgcg acugagaggc acgaacaguu ucuggccuuc 60
uccugccaau gccaaaggag aguugcccug c 91
//
ID zma-MIR529 standard; RNA; ZMA; 126 BP.
XX
AC MI0013241;
XX
DE Zea mays miR529 stem-loop
XX
RN [1]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..22
FT /accession="MIMAT0014030"
FT /product="zma-miR529-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 105..125
FT /accession="MIMAT0015364"
FT /product="zma-miR529-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 126 BP; 31 A; 28 C; 25 G; 0 T; 42 other;
gagaagagag agaguacagc cuuguugcca uguacacacu cagauaucaa cagucucuua 60
uauuugcugu uacuaccugu uauuaguguc cagugaugau gaaggcugua cccucucucu 120
ucuucu 126
//
ID zma-MIR390b standard; RNA; ZMA; 192 BP.
XX
AC MI0013244;
XX
DE Zea mays miR390b stem-loop
XX
RN [1]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..22
FT /accession="MIMAT0014033"
FT /product="zma-miR390b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 171..191
FT /accession="MIMAT0015367"
FT /product="zma-miR390b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 192 BP; 54 A; 44 C; 49 G; 0 T; 45 other;
gaagcucagg agggauagcg ccuaggaaau cacacauaga uuggagccac gaagaggaag 60
ggagaaugag agagagagag acagagcagc uaugcugcuc ugucucucuc ucucacuuuc 120
ucuuggaucc aucucaaggu ucugucuaua uaugaugaau cgauccgaag cgcuaucuau 180
ccugagcucc ac 192
//
ID aae-mir-275 standard; RNA; AAE; 83 BP.
XX
AC MI0013434;
XX
DE Aedes aegypti miR-275 stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was identified independently in Aedes aegypti [1] and in the
CC closely related Aedes albopictus, for which there was no genome sequence
CC [2]. The latter reads were therefore also mapped to the Aedes aegypti
CC genome [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0014208"
FT /product="aae-miR-275-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 56..75
FT /accession="MIMAT0014209"
FT /product="aae-miR-275-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 83 BP; 18 A; 21 C; 22 G; 0 T; 22 other;
auccuuucga uuucgcgcgc uaagcaggaa ccgagacuuu gucauuugcu agcagucagg 60
uaccugaagu agcgcgcgug auc 83
//
ID aae-mir-277 standard; RNA; AAE; 95 BP.
XX
AC MI0013435;
XX
DE Aedes aegypti miR-277 stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was identified independently in Aedes aegypti [1] and in the
CC closely related Aedes albopictus, for which there was no genome sequence
CC [2]. The latter reads were therefore also mapped to the Aedes aegypti
CC genome [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0014210"
FT /product="aae-miR-277-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 62..83
FT /accession="MIMAT0014211"
FT /product="aae-miR-277-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 95 BP; 25 A; 16 C; 21 G; 0 T; 33 other;
uaguuuugga gugcguguca gaagugcauu uacauaggua uuucccguuu agcaguauuu 60
guaaaugcac uaucugguac gacauuccag aauca 95
//
ID aae-mir-8 standard; RNA; AAE; 79 BP.
XX
AC MI0013437;
XX
DE Aedes aegypti miR-8 stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was identified independently in Aedes aegypti [1] and in the
CC closely related Aedes albopictus, for which there was no genome sequence
CC [2]. The latter reads were therefore also mapped to the Aedes aegypti
CC genome [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0014214"
FT /product="aae-miR-8-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 49..71
FT /accession="MIMAT0014215"
FT /product="aae-miR-8-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 79 BP; 22 A; 16 C; 15 G; 0 T; 26 other;
gucuguucac aucuuaccgg gcagcauuag auauuuuuga aauacuucua auacugucag 60
guaaagaugu cguccgaac 79
//
ID aae-mir-252 standard; RNA; AAE; 71 BP.
XX
AC MI0013438;
XX
DE Aedes aegypti miR-252 stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was identified independently in Aedes aegypti [1] and in the
CC closely related Aedes albopictus, for which there was no genome sequence
CC [2]. The latter reads were therefore also mapped to the Aedes aegypti
CC genome [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0014216"
FT /product="aae-miR-252-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 45..65
FT /accession="MIMAT0014217"
FT /product="aae-miR-252-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 71 BP; 19 A; 16 C; 17 G; 0 T; 19 other;
gaauucuuua cuaaguacua gugccgcagg agagauuuga accccugcug cccaagugcu 60
uaucgaagag u 71
//
ID aae-bantam standard; RNA; AAE; 71 BP.
XX
AC MI0013439;
XX
DE Aedes aegypti bantam stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was identified independently in Aedes aegypti [1] and in the
CC closely related Aedes albopictus, for which there was no genome sequence
CC [2]. The latter reads were therefore also mapped to the Aedes aegypti
CC genome [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..27
FT /accession="MIMAT0014218"
FT /product="aae-bantam-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 47..68
FT /accession="MIMAT0014219"
FT /product="aae-bantam-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 71 BP; 20 A; 9 C; 13 G; 0 T; 29 other;
agaaccgguu uucauuuucg aucugacuua uuugauuuaa caagagugag aucauuuuga 60
aagcugauuu u 71
//
ID aae-mir-71 standard; RNA; AAE; 77 BP.
XX
AC MI0013440;
XX
DE Aedes aegypti miR-71 stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was identified independently in Aedes aegypti [1] and in the
CC closely related Aedes albopictus, for which there was no genome sequence
CC [2]. The latter reads were therefore also mapped to the Aedes aegypti
CC genome [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0014220"
FT /product="aae-miR-71-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 51..72
FT /accession="MIMAT0014221"
FT /product="aae-miR-71-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 77 BP; 19 A; 17 C; 18 G; 0 T; 23 other;
cggcaagaaa gacaugggua gugagauagu uucacccuau ugcacuggga ucucacuacc 60
uugucuuuca ugcugau 77
//
ID aae-mir-276-1 standard; RNA; AAE; 91 BP.
XX
AC MI0013441;
XX
DE Aedes aegypti miR-276-1 stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0014222"
FT /product="aae-miR-276-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 57..77
FT /accession="MIMAT0014223"
FT /product="aae-miR-276-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 91 BP; 19 A; 19 C; 27 G; 0 T; 26 other;
acuggugauu gccaucagcg agguauagag uuccuacguu gcgugugcga aauugguagg 60
aacuucauac cgugcucuug gcuagccgug a 91
//
ID aae-mir-2a standard; RNA; AAE; 97 BP.
XX
AC MI0013443;
XX
DE Aedes aegypti miR-2a stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was identified independently in Aedes aegypti [1] and in the
CC closely related Aedes albopictus, for which there was no genome sequence
CC [2]. The latter reads were therefore also mapped to the Aedes aegypti
CC genome [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0014225"
FT /product="aae-miR-2a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 59..81
FT /accession="MIMAT0014226"
FT /product="aae-miR-2a-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 97 BP; 26 A; 21 C; 22 G; 0 T; 28 other;
ugggaacugu uuccacucuc aaagugguug ugaaaugagu uacucuugaa cgaucucaua 60
ucacagccag cuuugaagag cgaaacgguu ucucgca 97
//
ID aae-mir-92a standard; RNA; AAE; 82 BP.
XX
AC MI0013445;
XX
DE Aedes aegypti miR-92a stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was identified independently in Aedes aegypti [1] and in the
CC closely related Aedes albopictus, for which there was no genome sequence
CC [2]. The latter reads were therefore also mapped to the Aedes aegypti
CC genome [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0015369"
FT /product="aae-miR-92a-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 52..72
FT /accession="MIMAT0014228"
FT /product="aae-miR-92a-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 82 BP; 21 A; 18 C; 22 G; 0 T; 21 other;
aaucuacgca ucgguacgga caggggcaac auugugacau uugaaagcua auauugcacu 60
ugucccggcc uaugcgugga gu 82
//
ID aae-mir-306 standard; RNA; AAE; 129 BP.
XX
AC MI0013446;
XX
DE Aedes aegypti miR-306 stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was identified independently in Aedes aegypti [1] and in the
CC closely related Aedes albopictus, for which there was no genome sequence
CC [2]. The latter reads were therefore also mapped to the Aedes aegypti
CC genome [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0014229"
FT /product="aae-miR-306-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 94..115
FT /accession="MIMAT0014230"
FT /product="aae-miR-306-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 129 BP; 34 A; 33 C; 29 G; 0 T; 33 other;
cauucgcaau uucaccgguu cagguacuga gugacucuca gaugugcauu ucucaagcaa 60
ucucguccuc aggaccugag guugaaaaac ccugagagca ccucgguauc uaagccagug 120
uugcgaaaa 129
//
ID aae-mir-281 standard; RNA; AAE; 97 BP.
XX
AC MI0013447;
XX
DE Aedes aegypti miR-281 stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was identified independently in Aedes aegypti [1] and in the
CC closely related Aedes albopictus, for which there was no genome sequence
CC [2]. The latter reads were therefore also mapped to the Aedes aegypti
CC genome [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..39
FT /accession="MIMAT0014231"
FT /product="aae-miR-281-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 58..79
FT /accession="MIMAT0014232"
FT /product="aae-miR-281-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 97 BP; 30 A; 15 C; 20 G; 0 T; 32 other;
ugguuucgaa uaugaaaaua aagagagcua uccgucgaca guagggauau gauucacugu 60
cauggaauug cucucuuuau guacaauucg auauuca 97
//
ID aae-mir-1889 standard; RNA; AAE; 128 BP.
XX
AC MI0013448;
XX
DE Aedes aegypti miR-1889 stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was identified independently in Aedes aegypti [1] and in the
CC closely related Aedes albopictus, for which there was no genome sequence
CC [2]. The latter reads were therefore also mapped to the Aedes aegypti
CC genome [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0014233"
FT /product="aae-miR-1889-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 105..126
FT /accession="MIMAT0014234"
FT /product="aae-miR-1889-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 128 BP; 28 A; 31 C; 31 G; 0 T; 38 other;
gagguaaucu caaauuguaa caguggguug auuuuccugg ugaaucccgg ccuuguccuc 60
cgucacaagu gugacaagug ucucgaaaac guguucgcua uacccacguu acagauuggg 120
guuucccc 128
//
ID aae-mir-980 standard; RNA; AAE; 76 BP.
XX
AC MI0013449;
XX
DE Aedes aegypti miR-980 stem-loop
XX
RN [1]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was experimentally identified in the closely related Aedes
CC albopictus, for which there was no genome sequence, and therefore mapped
CC to the Aedes aegypti genome [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..33
FT /accession="MIMAT0014235"
FT /product="aae-miR-980-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 50..68
FT /accession="MIMAT0014236"
FT /product="aae-miR-980-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 76 BP; 18 A; 15 C; 20 G; 0 T; 23 other;
acuacaauuc ggccguucau ugggucaucu agcucguguu ggaaacaguu agcugccuag 60
ugaagggcaa uauugu 76
//
ID aae-mir-278 standard; RNA; AAE; 81 BP.
XX
AC MI0013450;
XX
DE Aedes aegypti miR-278 stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was identified independently in Aedes aegypti [1] and in the
CC closely related Aedes albopictus, for which there was no genome sequence
CC [2]. The latter reads were therefore also mapped to the Aedes aegypti
CC genome [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0014237"
FT /product="aae-miR-278-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 51..72
FT /accession="MIMAT0014238"
FT /product="aae-miR-278-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 81 BP; 14 A; 18 C; 26 G; 0 T; 23 other;
uggugcgaac ggacgauagu cuucagcggc cgugcauuug auagaauugg ucggugggac 60
uuucguccgu uuguaaccgc c 81
//
ID aae-mir-11 standard; RNA; AAE; 114 BP.
XX
AC MI0013453;
XX
DE Aedes aegypti miR-11 stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was identified independently in Aedes aegypti [1] and in the
CC closely related Aedes albopictus, for which there was no genome sequence
CC [2]. The latter reads were therefore also mapped to the Aedes aegypti
CC genome [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..48
FT /accession="MIMAT0014241"
FT /product="aae-miR-11-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 67..88
FT /accession="MIMAT0014242"
FT /product="aae-miR-11-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 114 BP; 28 A; 28 C; 28 G; 0 T; 30 other;
aacauugaug cgaguagugc cgcgcgagaa cuccggcugu gaccugugua cacuuuaucc 60
aaaucacauc acagucugag uucuugcuug gaggcucguc gaucaacuaa ugga 114
//
ID aae-mir-34 standard; RNA; AAE; 129 BP.
XX
AC MI0013456;
XX
DE Aedes aegypti miR-34 stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was identified independently in Aedes aegypti [1] and in the
CC closely related Aedes albopictus, for which there was no genome sequence
CC [2]. The latter reads were therefore also mapped to the Aedes aegypti
CC genome [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0014245"
FT /product="aae-miR-34-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 94..116
FT /accession="MIMAT0014246"
FT /product="aae-miR-34-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 129 BP; 22 A; 36 C; 44 G; 0 T; 27 other;
caaggcaaua cgcuauggca gugugguuag cugguugugu agaacuuugg ggggcuuccg 60
uggcguucgc gcgcacacgg gggcucagau ucacaaccac uauccgcccu gccgccgcga 120
ggugccagg 129
//
ID aae-mir-305 standard; RNA; AAE; 88 BP.
XX
AC MI0013459;
XX
DE Aedes aegypti miR-305 stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was identified independently in Aedes aegypti [1] and in the
CC closely related Aedes albopictus, for which there was no genome sequence
CC [2]. The latter reads were therefore also mapped to the Aedes aegypti
CC genome [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0014249"
FT /product="aae-miR-305-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 53..75
FT /accession="MIMAT0014250"
FT /product="aae-miR-305-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 88 BP; 19 A; 18 C; 20 G; 0 T; 31 other;
aaugucacau gucuauugua cuucaucagg ugcucugguu guuuucgaua cccggcacau 60
guuggaguac acuuaaugug cugacagu 88
//
ID aae-mir-12 standard; RNA; AAE; 102 BP.
XX
AC MI0013462;
XX
DE Aedes aegypti miR-12 stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was identified independently in Aedes aegypti [1] and in the
CC closely related Aedes albopictus, for which there was no genome sequence
CC [2]. The latter reads were therefore also mapped to the Aedes aegypti
CC genome [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0014253"
FT /product="aae-miR-12-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 78..99
FT /accession="MIMAT0014254"
FT /product="aae-miR-12-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 102 BP; 24 A; 23 C; 20 G; 0 T; 35 other;
uucggacuga guauuacauc agguacuggu gucgauauuc gaaucaccaa cgaaucgggu 60
uccuuugauu aacuuaccag uacuuauguu augcucucuc cg 102
//
ID aae-mir-13 standard; RNA; AAE; 84 BP.
XX
AC MI0013463;
XX
DE Aedes aegypti miR-13 stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was identified independently in Aedes aegypti [1] and in the
CC closely related Aedes albopictus, for which there was no genome sequence
CC [2]. The latter reads were therefore also mapped to the Aedes aegypti
CC genome [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0014255"
FT /product="aae-miR-13-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 54..76
FT /accession="MIMAT0014256"
FT /product="aae-miR-13-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 84 BP; 19 A; 16 C; 21 G; 0 T; 28 other;
gucgugaucg gaucguaaaa augguugugc uguguuguua cgcucgaaau ucauaucaca 60
gccauuuuga cgaguucgau ccug 84
//
ID aae-mir-999 standard; RNA; AAE; 79 BP.
XX
AC MI0013464;
XX
DE Aedes aegypti miR-999 stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was identified independently in Aedes aegypti [1] and in the
CC closely related Aedes albopictus, for which there was no genome sequence
CC [2]. The latter reads were therefore also mapped to the Aedes aegypti
CC genome [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 46..67
FT /accession="MIMAT0014257"
FT /product="aae-miR-999"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 79 BP; 19 A; 12 C; 24 G; 0 T; 24 other;
gcagggacgc ggucgugcag gaaauuauuu ggcauuagau ucaaauguua acuguaagac 60
ugugucuuug cgggugauc 79
//
ID aae-mir-308 standard; RNA; AAE; 76 BP.
XX
AC MI0013466;
XX
DE Aedes aegypti miR-308 stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was identified independently in Aedes aegypti [1] and in the
CC closely related Aedes albopictus, for which there was no genome sequence
CC [2]. The latter reads were therefore also mapped to the Aedes aegypti
CC genome [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0014260"
FT /product="aae-miR-308-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 52..69
FT /accession="MIMAT0014261"
FT /product="aae-miR-308-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 76 BP; 21 A; 12 C; 19 G; 0 T; 24 other;
agcgcuguuu cgcgguauau ucuuguggcu ugaugcauuu gaaaaaucuc aaaucacagg 60
aguauacugu gagaga 76
//
ID aae-mir-315 standard; RNA; AAE; 92 BP.
XX
AC MI0013467;
XX
DE Aedes aegypti miR-315 stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was identified independently in Aedes aegypti [1] and in the
CC closely related Aedes albopictus, for which there was no genome sequence
CC [2]. The latter reads were therefore also mapped to the Aedes aegypti
CC genome [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0014262"
FT /product="aae-miR-315-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 58..79
FT /accession="MIMAT0015370"
FT /product="aae-miR-315-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 92 BP; 31 A; 16 C; 18 G; 0 T; 27 other;
aguguuucua uaaaauuuug auuguugcuc agaaagccgu gcauuugaaa cgggucgcuu 60
ucgagcagua aucaaaguca aauaaaacac ca 92
//
ID aae-mir-932 standard; RNA; AAE; 95 BP.
XX
AC MI0013475;
XX
DE Aedes aegypti miR-932 stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was identified independently in Aedes aegypti [1] and in the
CC closely related Aedes albopictus, for which there was no genome sequence
CC [2]. The latter reads were therefore also mapped to the Aedes aegypti
CC genome [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0014269"
FT /product="aae-miR-932-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 56..77
FT /accession="MIMAT0014270"
FT /product="aae-miR-932-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 95 BP; 29 A; 17 C; 22 G; 0 T; 27 other;
guaaucauag aauagcuuca auuccguagu gcauugcagu gugcuuuaga cgaacugcaa 60
gcaaugugga agugaagcga uucucaauga ucauc 95
//
ID aae-mir-988 standard; RNA; AAE; 75 BP.
XX
AC MI0013487;
XX
DE Aedes aegypti miR-988 stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was identified independently in Aedes aegypti [1] and in the
CC closely related Aedes albopictus, for which there was no genome sequence
CC [2]. The latter reads were therefore also mapped to the Aedes aegypti
CC genome [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0014280"
FT /product="aae-miR-988-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 47..68
FT /accession="MIMAT0014281"
FT /product="aae-miR-988-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 75 BP; 12 A; 18 C; 21 G; 0 T; 24 other;
gcugcgggug ugugcuuugu gacaaugaga uucgguucga uaucaucccc uuguugcaaa 60
ccucacgcuu gcggu 75
//
ID aae-mir-2940 standard; RNA; AAE; 109 BP.
XX
AC MI0013489;
XX
DE Aedes aegypti miR-2940 stem-loop
XX
RN [1]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was experimentally identified in the closely related Aedes
CC albopictus, for which there was no genome sequence, and therefore mapped
CC to the Aedes aegypti genome [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..26
FT /accession="MIMAT0014283"
FT /product="aae-miR-2940-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 87..108
FT /accession="MIMAT0014284"
FT /product="aae-miR-2940-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 109 BP; 25 A; 23 C; 22 G; 0 T; 39 other;
cauugguuua ucuuaucugu cgaggcaagu uauuuuaccg gauaguguuu cuuuucguga 60
gcaaucacca cuauccagcu cuucuugucg acagggagau aaaucacug 109
//
ID aae-mir-33 standard; RNA; AAE; 80 BP.
XX
AC MI0013493;
XX
DE Aedes aegypti miR-33 stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was identified independently in Aedes aegypti [1] and in the
CC closely related Aedes albopictus, for which there was no genome sequence
CC [2]. The latter reads were therefore also mapped to the Aedes aegypti
CC genome [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0014287"
FT /product="aae-miR-33"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 80 BP; 17 A; 20 C; 21 G; 0 T; 22 other;
ccacccgggu gcauuguagu ugcauugcac uuuugcguuc gauaacacgg ugcaauacuu 60
cugcaaugca agccaggugg 80
//
ID aae-mir-263a standard; RNA; AAE; 97 BP.
XX
AC MI0013495;
XX
DE Aedes aegypti miR-263a stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0014289"
FT /product="aae-miR-263a-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 54..75
FT /accession="MIMAT0015372"
FT /product="aae-miR-263a-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 97 BP; 24 A; 21 C; 24 G; 0 T; 28 other;
uccuaguaca cguaauggca cuggaagaau ucacggguau auuuugaaau ccccguguuc 60
uggcaguggc aucccuggua cuaaggugau ucaucag 97
//
ID aae-mir-79 standard; RNA; AAE; 96 BP.
XX
AC MI0013500;
XX
DE Aedes aegypti miR-79 stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
RN [2]
RX PUBMED; 20167119.
RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR;
RT "Identification of microRNAs expressed in two mosquito vectors, Aedes
RT albopictus and Culex quinquefasciatus";
RL BMC Genomics. 11:119(2010).
XX
CC This miRNA was identified independently in Aedes aegypti [1] and in the
CC closely related Aedes albopictus, for which there was no genome sequence
CC [2]. The latter reads were therefore also mapped to the Aedes aegypti
CC genome [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0014294"
FT /product="aae-miR-79-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 56..77
FT /accession="MIMAT0014295"
FT /product="aae-miR-79-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 96 BP; 26 A; 18 C; 23 G; 0 T; 29 other;
gaacccaucg uccaugcuuu ggcgcuuuag cuguaugaua gaauuuaaua uuucauaaag 60
cuagauuacc aaagcaugga aggcuugggc gguguc 96
//
ID aae-mir-263b standard; RNA; AAE; 91 BP.
XX
AC MI0013515;
XX
DE Aedes aegypti miR-263b stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0014309"
FT /product="aae-miR-263b-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 59..79
FT /accession="MIMAT0014310"
FT /product="aae-miR-263b-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 91 BP; 20 A; 21 C; 20 G; 0 T; 30 other;
gaccaauuac gaaccuuggc acugggagaa uucacaggcg cuauuugcua ucauucugug 60
gaucuuuucg ugccaucguu uaaauucggu c 91
//
ID aae-mir-2945 standard; RNA; AAE; 82 BP.
XX
AC MI0013522;
XX
DE Aedes aegypti miR-2945 stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..33
FT /accession="MIMAT0014315"
FT /product="aae-miR-2945-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 52..73
FT /accession="MIMAT0014316"
FT /product="aae-miR-2945-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 82 BP; 16 A; 15 C; 24 G; 0 T; 27 other;
ucugaucuga gcggguccgu uucuaguguc augugcugua uucgaauauc augacuagag 60
gcagacucgu uuaggucugg ga 82
//
ID aae-mir-92b standard; RNA; AAE; 83 BP.
XX
AC MI0013527;
XX
DE Aedes aegypti miR-92b stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..34
FT /accession="MIMAT0014321"
FT /product="aae-miR-92b-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 52..73
FT /accession="MIMAT0014322"
FT /product="aae-miR-92b-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 83 BP; 16 A; 21 C; 22 G; 0 T; 24 other;
gcuccgaaug uaggucguga cuugugcccg uuugcugaau uuuaaugguc aaauugcacu 60
ugucccggcc ugcagccaag agc 83
//
ID mmu-mir-3057 standard; RNA; MMU; 91 BP.
XX
AC MI0014020;
XX
DE Mus musculus miR-3057 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526465; Mir3057.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..37
FT /accession="MIMAT0014822"
FT /product="mmu-miR-3057-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 58..79
FT /accession="MIMAT0014823"
FT /product="mmu-miR-3057-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 91 BP; 21 A; 20 C; 28 G; 0 T; 22 other;
ugaaggugug ugcauuggag cugagauucu gcgggaugga uuaggaguau auuguccucc 60
cacaggccca gcucauagca caagccaucg g 91
//
ID mmu-mir-3060 standard; RNA; MMU; 83 BP.
XX
AC MI0014022;
XX
DE Mus musculus miR-3060 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526466; Mir3060.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..33
FT /accession="MIMAT0014826"
FT /product="mmu-miR-3060-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 50..71
FT /accession="MIMAT0014827"
FT /product="mmu-miR-3060-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 83 BP; 18 A; 18 C; 28 G; 0 T; 19 other;
gggcgugggg guggggagug cuucgugcuu cugguugaag agaaaaugac cauagcacag 60
aagcacuccc accagcuuug ucu 83
//
ID mmu-mir-3061 standard; RNA; MMU; 91 BP.
XX
AC MI0014023;
XX
DE Mus musculus miR-3061 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526467; Mir3061.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0014828"
FT /product="mmu-miR-3061-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 59..80
FT /accession="MIMAT0014829"
FT /product="mmu-miR-3061-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 91 BP; 15 A; 23 C; 30 G; 0 T; 23 other;
guguacugug gggcaguggg ccgugaaagg uagccuggug guccccuuug agcuaaggcu 60
accuuugaua guccacugcc ccacggugca u 91
//
ID mmu-mir-3066 standard; RNA; MMU; 83 BP.
XX
AC MI0014028;
XX
DE Mus musculus miR-3066 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526470; Mir3066.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0014838"
FT /product="mmu-miR-3066-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 50..71
FT /accession="MIMAT0014839"
FT /product="mmu-miR-3066-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 83 BP; 19 A; 14 C; 21 G; 0 T; 29 other;
gugugguaug uuuugguugc uguagauuaa guaguuuaau augaugcugc acuuaauaga 60
ccgcaaccug cacuggccau gcu 83
//
ID mmu-mir-3069 standard; RNA; MMU; 65 BP.
XX
AC MI0014031;
XX
DE Mus musculus miR-3069 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526471; Mir3069.
XX
CC This sequence was retracted by the authors prior to publication [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..25
FT /accession="MIMAT0014844"
FT /product="mmu-miR-3069-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 43..64
FT /accession="MIMAT0014845"
FT /product="mmu-miR-3069-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 65 BP; 17 A; 13 C; 17 G; 0 T; 18 other;
cuuggcaguc aagauauugu uuagcagacg gagcgguuuc uguuggacac uaaguacugc 60
cacaa 65
//
ID mmu-mir-3070-1 standard; RNA; MMU; 89 BP.
XX
AC MI0014032;
XX
DE Mus musculus miR-3070-1 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526472; Mir3070a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0014846"
FT /product="mmu-miR-3070-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 57..78
FT /accession="MIMAT0014847"
FT /product="mmu-miR-3070-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 89 BP; 15 A; 24 C; 25 G; 0 T; 25 other;
gugcugagug aggcugagcc ccugaccuug aaccugggau ccuauccaug aucuccuggu 60
gcuaccguca gggguagauu ccuugucau 89
//
ID mmu-mir-3070-2 standard; RNA; MMU; 89 BP.
XX
AC MI0014033;
XX
DE Mus musculus miR-3070-2 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526519; Mir3070b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0014846"
FT /product="mmu-miR-3070-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 57..78
FT /accession="MIMAT0014849"
FT /product="mmu-miR-3070-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 89 BP; 14 A; 23 C; 26 G; 0 T; 26 other;
gugcugagug aggcugagcc ccugaccuug aaccugggau ccuccccaug aucuucuggu 60
gcuaugguca gggguagauu ccuugucau 89
//
ID mmu-mir-3072 standard; RNA; MMU; 83 BP.
XX
AC MI0014035;
XX
DE Mus musculus miR-3072 stem-loop
XX
RN [1]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [2]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 4441432; Mir3072.
DR ENTREZGENE; 100499517; Mir3072.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0014852"
FT /product="mmu-miR-3072-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 51..72
FT /accession="MIMAT0014853"
FT /product="mmu-miR-3072-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
XX
SQ Sequence 83 BP; 11 A; 31 C; 29 G; 0 T; 12 other;
gggcuguuga gugcgaggga ccccgaggga gggcaggcug ccccaggccc ugcccccucc 60
aggaagccuu cuugcuccag ccc 83
//
ID mmu-mir-3073a standard; RNA; MMU; 85 BP.
XX
AC MI0014036;
XX
DE Mus musculus miR-3073 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526547; Mir3073.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0014854"
FT /product="mmu-miR-3073a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 53..74
FT /accession="MIMAT0014855"
FT /product="mmu-miR-3073a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 85 BP; 15 A; 24 C; 26 G; 0 T; 20 other;
gcuguuccug cccagugguc acaguuggcg ccagcccuag agucuagaug gguugauguc 60
cacugugacc auagugcagg ccagc 85
//
ID mmu-mir-3079 standard; RNA; MMU; 90 BP.
XX
AC MI0014042;
XX
DE Mus musculus miR-3079 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526548; Mir3079.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0014866"
FT /product="mmu-miR-3079-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 58..78
FT /accession="MIMAT0014867"
FT /product="mmu-miR-3079-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 90 BP; 22 A; 22 C; 22 G; 0 T; 24 other;
gccaagcuaa ggacuuugau cugaugagcu aagcuggagu ucccauucac cuggcuccag 60
gcucaucaga ugaaaguccu uagcuuaggu 90
//
ID mmu-mir-3084-1 standard; RNA; MMU; 69 BP.
XX
AC MI0014047;
XX
DE Mus musculus miR-3084-1 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526521; Mir3084.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0014876"
FT /product="mmu-miR-3084-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 44..64
FT /accession="MIMAT0014877"
FT /product="mmu-miR-3084-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 69 BP; 27 A; 11 C; 12 G; 0 T; 19 other;
caaauaguug aagguuaauu agcagaguaa cugaauauag uaauucugcc agucuccuuc 60
agacaaaaa 69
//
ID mmu-mir-3085 standard; RNA; MMU; 89 BP.
XX
AC MI0014048;
XX
DE Mus musculus miR-3085 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526549; Mir3085.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..40
FT /accession="MIMAT0014878"
FT /product="mmu-miR-3085-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 56..76
FT /accession="MIMAT0014879"
FT /product="mmu-miR-3085-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 89 BP; 16 A; 27 C; 27 G; 0 T; 19 other;
gucccaacuc ugggaaggug ccauuccgag ggccaagagu cugaauauga gucacucugg 60
cugcuauggc ccccucccag ggcuugggc 89
//
ID mmu-mir-669d-2 standard; RNA; MMU; 86 BP.
XX
AC MI0014051;
XX
DE Mus musculus miR-669d-2 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526550; Mir669d-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0005833"
FT /product="mmu-miR-669d-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 53..74
FT /accession="MIMAT0014884"
FT /product="mmu-miR-669d-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 86 BP; 26 A; 17 C; 15 G; 0 T; 28 other;
gugcaugugu guauacuugu gugugcaugu auaugugucu auaugaauau acauauacau 60
acacacccau auacacacgc augcac 86
//
ID mmu-mir-467a-2 standard; RNA; MMU; 83 BP.
XX
AC MI0014053;
XX
DE Mus musculus miR-467a-2 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3719571; Mir467a-2.
DR ENTREZGENE; 100526522; Mir467a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0003409"
FT /product="mmu-miR-467a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 50..71
FT /accession="MIMAT0002108"
FT /product="mmu-miR-467a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 83 BP; 23 A; 20 C; 15 G; 0 T; 25 other;
ugugccugug ugcguaagug ccugcaugua uaugcgugua uauuuuaugc auauacauac 60
acacaccuac acacacaugc aca 83
//
ID mmu-mir-669a-4 standard; RNA; MMU; 87 BP.
XX
AC MI0014054;
XX
DE Mus musculus miR-669a-4 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526535; Mir669a-4.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0003477"
FT /product="mmu-miR-669a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 52..74
FT /accession="MIMAT0017243"
FT /product="mmu-miR-669a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 87 BP; 28 A; 15 C; 16 G; 0 T; 28 other;
ugugcaugug uguauaguug ugugugcaug uucaugucua uauuugaaua uacauaacau 60
acacacacac guauaaacgc aagcaca 87
//
ID mmu-mir-669a-5 standard; RNA; MMU; 87 BP.
XX
AC MI0014055;
XX
DE Mus musculus miR-669a-5 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526483; Mir669a-5.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0003477"
FT /product="mmu-miR-669a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 52..74
FT /accession="MIMAT0017243"
FT /product="mmu-miR-669a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 87 BP; 28 A; 15 C; 16 G; 0 T; 28 other;
ugugcaugug uguauaguug ugugugcaug uucaugucua uauuugaaua uacauaacau 60
acacacacac guauaaacgc aagcaca 87
//
ID mmu-mir-467a-3 standard; RNA; MMU; 83 BP.
XX
AC MI0014056;
XX
DE Mus musculus miR-467a-3 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3719572; Mir467a-3.
DR ENTREZGENE; 100526484; Mir467a-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0003409"
FT /product="mmu-miR-467a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 50..71
FT /accession="MIMAT0002108"
FT /product="mmu-miR-467a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 83 BP; 23 A; 21 C; 15 G; 0 T; 24 other;
ugugcccgug ugcguaagug ccugcaugua uaugcgugua uauuuuaugc auauacauac 60
acacaccuac acacacaugc aca 83
//
ID mmu-mir-669a-6 standard; RNA; MMU; 87 BP.
XX
AC MI0014058;
XX
DE Mus musculus miR-669a-6 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526485; Mir669a-6.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0003477"
FT /product="mmu-miR-669a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 52..74
FT /accession="MIMAT0017243"
FT /product="mmu-miR-669a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 87 BP; 28 A; 15 C; 16 G; 0 T; 28 other;
ugugcaugug uguauaguug ugugugcaug uucaugucua uauuugaaua uacauaacau 60
acacacacac guauaaacgc aagcaca 87
//
ID mmu-mir-467a-4 standard; RNA; MMU; 83 BP.
XX
AC MI0014059;
XX
DE Mus musculus miR-467a-4 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3719573; Mir467a-4.
DR ENTREZGENE; 100526523; Mir467a-4.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0003409"
FT /product="mmu-miR-467a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 50..71
FT /accession="MIMAT0002108"
FT /product="mmu-miR-467a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 83 BP; 23 A; 20 C; 15 G; 0 T; 25 other;
ugugccugug ugcguaagug ccugcaugua uaugcgugua uauuuuaugc auauacauac 60
acacaccuac acacacaugc aca 83
//
ID mmu-mir-669a-7 standard; RNA; MMU; 87 BP.
XX
AC MI0014061;
XX
DE Mus musculus miR-669a-7 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526536; Mir669a-7.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0003477"
FT /product="mmu-miR-669a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 52..74
FT /accession="MIMAT0017243"
FT /product="mmu-miR-669a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 87 BP; 28 A; 15 C; 16 G; 0 T; 28 other;
ugugcaugug uguauaguug ugugugcaug uucaugucua uauuugaaua uacauaacau 60
acacacacac guauaaacgc aagcaca 87
//
ID mmu-mir-467a-5 standard; RNA; MMU; 83 BP.
XX
AC MI0014062;
XX
DE Mus musculus miR-467a-5 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3719574; Mir467a-5.
DR ENTREZGENE; 100526487; Mir467a-5.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0003409"
FT /product="mmu-miR-467a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 50..71
FT /accession="MIMAT0002108"
FT /product="mmu-miR-467a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 83 BP; 23 A; 20 C; 15 G; 0 T; 25 other;
ugugccugug ugcguaagug ccugcaugua uaugcgugua uauuuuaugc auauacauac 60
acacaccuac acacacaugc aca 83
//
ID mmu-mir-669p-1 standard; RNA; MMU; 87 BP.
XX
AC MI0014064;
XX
DE Mus musculus miR-669p-1 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526552; Mir669p-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0014889"
FT /product="mmu-miR-669p-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 52..75
FT /accession="MIMAT0014890"
FT /product="mmu-miR-669p-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 87 BP; 28 A; 16 C; 16 G; 0 T; 27 other;
gugcaugugu guauaguugu gugugcaugu ucaugucuau auuugaauau acauaacaua 60
cacacacaca cguauaaacg caagcac 87
//
ID mmu-mir-467a-6 standard; RNA; MMU; 83 BP.
XX
AC MI0014065;
XX
DE Mus musculus miR-467a-6 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3719576; Mir467a-6.
DR ENTREZGENE; 100526537; Mir467a-6.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0003409"
FT /product="mmu-miR-467a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 50..71
FT /accession="MIMAT0002108"
FT /product="mmu-miR-467a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 83 BP; 23 A; 21 C; 15 G; 0 T; 24 other;
ugugcccgug ugcguaagug ccugcaugua uaugcgugua uauuuuaugc auauacauac 60
acacaccuac acacacaugc aca 83
//
ID mmu-mir-669a-8 standard; RNA; MMU; 87 BP.
XX
AC MI0014066;
XX
DE Mus musculus miR-669a-8 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526489; Mir669a-8.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0003477"
FT /product="mmu-miR-669a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 52..74
FT /accession="MIMAT0017243"
FT /product="mmu-miR-669a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 87 BP; 28 A; 15 C; 16 G; 0 T; 28 other;
ugugcaugug uguauaguug ugugugcaug uucaugucua uauuugaaua uacauaacau 60
acacacacac guauaaacgc aagcaca 87
//
ID mmu-mir-669a-9 standard; RNA; MMU; 87 BP.
XX
AC MI0014068;
XX
DE Mus musculus miR-669a-9 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526491; Mir669a-9.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0003477"
FT /product="mmu-miR-669a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 52..74
FT /accession="MIMAT0017243"
FT /product="mmu-miR-669a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 87 BP; 28 A; 15 C; 16 G; 0 T; 28 other;
ugugcaugug uguauaguug ugugugcaug uucaugucua uauuugaaua uacauaacau 60
acacacacac guauaaacgc aagcaca 87
//
ID mmu-mir-467a-7 standard; RNA; MMU; 83 BP.
XX
AC MI0014069;
XX
DE Mus musculus miR-467a-7 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3719577; Mir467a-7.
DR ENTREZGENE; 100526553; Mir467a-7.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0003409"
FT /product="mmu-miR-467a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 50..71
FT /accession="MIMAT0002108"
FT /product="mmu-miR-467a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 83 BP; 23 A; 20 C; 15 G; 0 T; 25 other;
ugugccugug ugcguaagug ccugcaugua uaugcgugua uauuuuaugc auauacauac 60
acacaccuac acacacaugc aca 83
//
ID mmu-mir-669p-2 standard; RNA; MMU; 87 BP.
XX
AC MI0014071;
XX
DE Mus musculus miR-669p-2 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526538; Mir669p-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0014889"
FT /product="mmu-miR-669p-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 52..75
FT /accession="MIMAT0014890"
FT /product="mmu-miR-669p-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 87 BP; 28 A; 16 C; 16 G; 0 T; 27 other;
gugcaugugu guauaguugu gugugcaugu ucaugucuau auuugaauau acauaacaua 60
cacacacaca cguauaaacg caagcac 87
//
ID mmu-mir-467a-8 standard; RNA; MMU; 83 BP.
XX
AC MI0014072;
XX
DE Mus musculus miR-467a-8 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3719578; Mir467a-8.
DR ENTREZGENE; 100526493; Mir467a-8.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0003409"
FT /product="mmu-miR-467a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 50..71
FT /accession="MIMAT0002108"
FT /product="mmu-miR-467a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 83 BP; 23 A; 20 C; 15 G; 0 T; 25 other;
ugugccugug ugcguaagug ccugcaugua uaugcgugua uauuuuaugc auauacauac 60
acacaccuac acacacaugc aca 83
//
ID mmu-mir-669a-10 standard; RNA; MMU; 87 BP.
XX
AC MI0014073;
XX
DE Mus musculus miR-669a-10 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526494; Mir669a-10.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0003477"
FT /product="mmu-miR-669a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 52..74
FT /accession="MIMAT0017243"
FT /product="mmu-miR-669a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 87 BP; 28 A; 15 C; 16 G; 0 T; 28 other;
ugugcaugug uguauaguug ugugugcaug uucaugucua uauuugaaua uacauaacau 60
acacacacac guauaaacgc aagcaca 87
//
ID mmu-mir-467a-9 standard; RNA; MMU; 83 BP.
XX
AC MI0014074;
XX
DE Mus musculus miR-467a-9 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526554; Mir467a-9.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0003409"
FT /product="mmu-miR-467a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 50..71
FT /accession="MIMAT0002108"
FT /product="mmu-miR-467a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 83 BP; 23 A; 20 C; 15 G; 0 T; 25 other;
ugugccugug ugcguaagug ccugcaugua uaugcgugua uauuuuaugc auauacauac 60
acacaccuac acacacaugc aca 83
//
ID mmu-mir-669a-11 standard; RNA; MMU; 87 BP.
XX
AC MI0014075;
XX
DE Mus musculus miR-669a-11 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526495; Mir669a-11.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0003477"
FT /product="mmu-miR-669a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 52..74
FT /accession="MIMAT0017243"
FT /product="mmu-miR-669a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 87 BP; 28 A; 15 C; 16 G; 0 T; 28 other;
ugugcaugug uguauaguug ugugugcaug uucaugucua uauuugaaua uacauaacau 60
acacacacac guauaaacgc aagcaca 87
//
ID mmu-mir-467a-10 standard; RNA; MMU; 83 BP.
XX
AC MI0014076;
XX
DE Mus musculus miR-467a-10 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526539; Mir467a-10.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0003409"
FT /product="mmu-miR-467a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 50..71
FT /accession="MIMAT0002108"
FT /product="mmu-miR-467a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 83 BP; 23 A; 21 C; 15 G; 0 T; 24 other;
ugugcccgug ugcguaagug ccugcaugua uaugcgugua uauuuuaugc auauacauac 60
acacaccuac acacacaugc aca 83
//
ID mmu-mir-669a-12 standard; RNA; MMU; 87 BP.
XX
AC MI0014077;
XX
DE Mus musculus miR-669a-12 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526496; Mir669a-12.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0003477"
FT /product="mmu-miR-669a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 52..74
FT /accession="MIMAT0017243"
FT /product="mmu-miR-669a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 87 BP; 28 A; 15 C; 16 G; 0 T; 28 other;
ugugcaugug uguauaguug ugugugcaug uucaugucua uauuugaaua uacauaacau 60
acacacacac guauaaacgc aagcaca 87
//
ID mmu-mir-466n standard; RNA; MMU; 94 BP.
XX
AC MI0014079;
XX
DE Mus musculus miR-466n stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526524; Mir466n.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0014893"
FT /product="mmu-miR-466n-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 58..79
FT /accession="MIMAT0014894"
FT /product="mmu-miR-466n-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 94 BP; 25 A; 13 C; 25 G; 0 T; 31 other;
guaugugcau guguguuugu gugugcguac auguacaugu guguauauga auaugcauau 60
acaugagagc auacauagac acacgugcau gugc 94
//
ID mmu-mir-3091 standard; RNA; MMU; 76 BP.
XX
AC MI0014084;
XX
DE Mus musculus miR-3091 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526556; Mir3091.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0014903"
FT /product="mmu-miR-3091-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 45..66
FT /accession="MIMAT0014904"
FT /product="mmu-miR-3091-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 76 BP; 10 A; 21 C; 29 G; 0 T; 16 other;
ugcuugcggg ccaugggucu gguugggccc gcagacucgg agugcgggcc ugaccagucu 60
caagaccugc guggua 76
//
ID mmu-mir-3093 standard; RNA; MMU; 87 BP.
XX
AC MI0014086;
XX
DE Mus musculus miR-3093 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526540; Mir3093.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0014907"
FT /product="mmu-miR-3093-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 56..77
FT /accession="MIMAT0014908"
FT /product="mmu-miR-3093-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 87 BP; 14 A; 28 C; 32 G; 0 T; 13 other;
cgagcucggc ucugccgcac cccgcggagc ucacacucga ccuuccagag aagggugugg 60
acaccguggg agguugggga ggccucg 87
//
ID mmu-mir-3095 standard; RNA; MMU; 87 BP.
XX
AC MI0014088;
XX
DE Mus musculus miR-3095 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526502; Mir3095.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0014911"
FT /product="mmu-miR-3095-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 54..76
FT /accession="MIMAT0014912"
FT /product="mmu-miR-3095-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 87 BP; 19 A; 20 C; 26 G; 0 T; 22 other;
gagcccugug cacaagcuuu cucaucugug acacucgaga ugguuucagg gaguggacac 60
uggagagaga gcuuuugcaa gucgcuc 87
//
ID mmu-mir-3098 standard; RNA; MMU; 87 BP.
XX
AC MI0014091;
XX
DE Mus musculus miR-3098 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526526; Mir3098.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0014917"
FT /product="mmu-miR-3098-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 54..74
FT /accession="MIMAT0014918"
FT /product="mmu-miR-3098-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 87 BP; 15 A; 25 C; 23 G; 0 T; 24 other;
ugugguuggg aggaguccua acagcaggag uaggagcucu gauuaucccc ugcuucugcu 60
gccugccuuu aggacccuuu ccccaca 87
//
ID mmu-mir-3101 standard; RNA; MMU; 88 BP.
XX
AC MI0014093;
XX
DE Mus musculus miR-3101 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526505; Mir3101.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0014921"
FT /product="mmu-miR-3101-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 54..74
FT /accession="MIMAT0014922"
FT /product="mmu-miR-3101-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 88 BP; 17 A; 16 C; 26 G; 0 T; 29 other;
gugggguagg uagcagguac cauugacuaa agcuaguacu auaggcuugc cucuagcuuu 60
gguggauggu cuuugcuaag uucucugc 88
//
ID mmu-mir-344c standard; RNA; MMU; 92 BP.
XX
AC MI0014096;
XX
DE Mus musculus miR-344c stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526506; Mir344c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..40
FT /accession="MIMAT0014927"
FT /product="mmu-miR-344c-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 58..80
FT /accession="MIMAT0014928"
FT /product="mmu-miR-344c-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 92 BP; 22 A; 22 C; 23 G; 0 T; 25 other;
cugcaagggu uuuuuucagu caggcugcug gcuagaguac agcuaucagc ugguaccuga 60
ucuagucaaa gccugacagu aaacugcucc ag 92
//
ID mmu-mir-344f standard; RNA; MMU; 68 BP.
XX
AC MI0014098;
XX
DE Mus musculus miR-344f stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526527; Mir344f.
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..24
FT /accession="MIMAT0014931"
FT /product="mmu-miR-344f-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 46..66
FT /accession="MIMAT0014932"
FT /product="mmu-miR-344f-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 68 BP; 14 A; 22 C; 17 G; 0 T; 15 other;
ccagucaguc uccuggcugg aguccagcuc uaagcugguu ccaggcucua gccaggaccu 60
gacuacaa 68
//
ID mmu-mir-3102 standard; RNA; MMU; 104 BP.
XX
AC MI0014099;
XX
DE Mus musculus miR-3102 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526508; Mir3102.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..22
FT /accession="MIMAT0014933"
FT /product="mmu-miR-3102-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 23..43
FT /accession="MIMAT0014934"
FT /product="mmu-miR-3102-5p.2-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 60..80
FT /accession="MIMAT0014935"
FT /product="mmu-miR-3102-3p.2-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 81..103
FT /accession="MIMAT0014936"
FT /product="mmu-miR-3102-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 104 BP; 18 A; 30 C; 36 G; 0 T; 20 other;
gugaguggcc aggguggggc uggguggugc aggcaggaga gccauugauc uauugugggc 60
ucuacucccu gccccagcca gagcacccca uuggcuaccc acag 104
//
ID mmu-mir-3103 standard; RNA; MMU; 67 BP.
XX
AC MI0014100;
XX
DE Mus musculus miR-3103 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526559; Mir3103.
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..22
FT /accession="MIMAT0014937"
FT /product="mmu-miR-3103-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 45..66
FT /accession="MIMAT0014938"
FT /product="mmu-miR-3103-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 67 BP; 14 A; 16 C; 18 G; 0 T; 19 other;
aggagggagg aucugcuguu agaaagucuc ugguuuguga ccucuaaccu cugauccuuc 60
ccacagg 67
//
ID mmu-mir-3105 standard; RNA; MMU; 85 BP.
XX
AC MI0014102;
XX
DE Mus musculus miR-3105 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526562; Mir3105.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0014941"
FT /product="mmu-miR-3105-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 51..72
FT /accession="MIMAT0014942"
FT /product="mmu-miR-3105-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 85 BP; 21 A; 22 C; 23 G; 0 T; 19 other;
gagcaggcuc uggagagcaa gcccguaagc agcguaaguu acugaggaac acugcuuaug 60
agcuugcacu ccauagccuc ugcuu 85
//
ID mmu-mir-486b standard; RNA; MMU; 90 BP.
XX
AC MI0014103;
XX
DE Mus musculus miR-486b stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526510; Mir3107.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0014943"
FT /product="mmu-miR-486b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 57..76
FT /accession="MIMAT0014944"
FT /product="mmu-miR-486b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 90 BP; 19 A; 31 C; 28 G; 0 T; 12 other;
cccacccuga cgcauccugu acugagcugc cccgagcuga gcacagugaa ggaccucggg 60
gcagcucagu acaggacccc ucagggaggg 90
//
ID mmu-mir-3109 standard; RNA; MMU; 88 BP.
XX
AC MI0014106;
XX
DE Mus musculus miR-3109 stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526560; Mir3109.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0014949"
FT /product="mmu-miR-3109-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 54..74
FT /accession="MIMAT0014950"
FT /product="mmu-miR-3109-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 88 BP; 18 A; 20 C; 26 G; 0 T; 24 other;
ugccugcucc uguaaaugga ugcgaugguu cccaugcugu ucugaggcag agcuagggcc 60
aucucaucca gauacugugg agauggua 88
//
ID mmu-mir-374c standard; RNA; MMU; 49 BP.
XX
AC MI0014108;
XX
DE Mus musculus miR-374c stem-loop
XX
RN [1]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR ENTREZGENE; 100526513; Mir374c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..21
FT /accession="MIMAT0014953"
FT /product="mmu-miR-374c-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 29..47
FT /accession="MIMAT0014954"
FT /product="mmu-miR-374c-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 49 BP; 17 A; 8 C; 9 G; 0 T; 15 other;
gauaauacaa ccugcuaagu gcuagaacac uuagcagguu guauuauau 49
//
ID hsa-mir-3126 standard; RNA; HSA; 74 BP.
XX
AC MI0014143;
XX
DE Homo sapiens miR-3126 stem-loop
XX
RN [1]
RX PUBMED; 19784364.
RA Goff LA, Davila J, Swerdel MR, Moore JC, Cohen RI, Wu H, Sun YE, Hart RP;
RT "Ago2 immunoprecipitation identifies predicted microRNAs in human
RT embryonic stem cells and neural precursors";
RL PLoS One. 4:e7192(2009).
XX
RN [2]
RX PUBMED; 20300190.
RA Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons
RA PG, Schmidt C, Sturm RA, Hayward NK;
RT "Characterization of the Melanoma miRNAome by Deep Sequencing";
RL PLoS One. 5:e9685(2010).
XX
RN [3]
RX PUBMED; 20224791.
RA Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain
RA MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM,
RA Gunaratne PH;
RT "Discovery of novel microRNAs in female reproductive tract using next
RT generation sequencing";
RL PLoS One. 5:e9637(2010).
XX
RN [4]
RX PUBMED; 21199797.
RA Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman
RA N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C;
RT "Identification of new microRNAs in paired normal and tumor breast tissue
RT suggests a dual role for the ERBB2/Her2 gene";
RL Cancer Res. 71:78-86(2011).
XX
DR ENTREZGENE; 100423030; MIR3126.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0014989"
FT /product="hsa-miR-3126-5p"
FT /evidence=experimental
FT /experiment="Illumina [2-4]"
FT miRNA 46..67
FT /accession="MIMAT0015377"
FT /product="hsa-miR-3126-3p"
FT /evidence=experimental
FT /experiment="SOLiD [1], Illumina [4]"
XX
SQ Sequence 74 BP; 23 A; 13 C; 17 G; 0 T; 21 other;
augauuauau gagggacaga ugccagaagc acugguuaug auuugcaucu ggcauccguc 60
acacagauaa uuau 74
//
ID hsa-mir-3127 standard; RNA; HSA; 76 BP.
XX
AC MI0014144;
XX
DE Homo sapiens miR-3127 stem-loop
XX
RN [1]
RX PUBMED; 20300190.
RA Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons
RA PG, Schmidt C, Sturm RA, Hayward NK;
RT "Characterization of the Melanoma miRNAome by Deep Sequencing";
RL PLoS One. 5:e9685(2010).
XX
RN [2]
RX PUBMED; 21199797.
RA Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman
RA N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C;
RT "Identification of new microRNAs in paired normal and tumor breast tissue
RT suggests a dual role for the ERBB2/Her2 gene";
RL Cancer Res. 71:78-86(2011).
XX
DR ENTREZGENE; 100422928; MIR3127.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0014990"
FT /product="hsa-miR-3127-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 47..68
FT /accession="MIMAT0019201"
FT /product="hsa-miR-3127-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 76 BP; 12 A; 19 C; 30 G; 0 T; 15 other;
ggccaggccc aucagggcuu guggaauggg aaggagaagg gacgcuuccc cuucugcagg 60
ccugcugggu guggcu 76
//
ID hsa-mir-3130-1 standard; RNA; HSA; 75 BP.
XX
AC MI0014147;
XX
DE Homo sapiens miR-3130-1 stem-loop
XX
RN [1]
RX PUBMED; 20300190.
RA Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons
RA PG, Schmidt C, Sturm RA, Hayward NK;
RT "Characterization of the Melanoma miRNAome by Deep Sequencing";
RL PLoS One. 5:e9685(2010).
XX
RN [2]
RX PUBMED; 20224791.
RA Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain
RA MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM,
RA Gunaratne PH;
RT "Discovery of novel microRNAs in female reproductive tract using next
RT generation sequencing";
RL PLoS One. 5:e9637(2010).
XX
RN [3]
RX PUBMED; 21199797.
RA Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman
RA N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C;
RT "Identification of new microRNAs in paired normal and tumor breast tissue
RT suggests a dual role for the ERBB2/Her2 gene";
RL Cancer Res. 71:78-86(2011).
XX
DR ENTREZGENE; 100422993; MIR3130-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0014995"
FT /product="hsa-miR-3130-5p"
FT /evidence=experimental
FT /experiment="Illumina [1,3]"
FT miRNA 44..64
FT /accession="MIMAT0014994"
FT /product="hsa-miR-3130-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-3]"
XX
SQ Sequence 75 BP; 16 A; 20 C; 21 G; 0 T; 18 other;
cuugucaugu cuuacccagu cuccggugca gccuguuguc aaggcugcac cggagacugg 60
guaagacaug acaag 75
//
ID hsa-mir-3130-2 standard; RNA; HSA; 75 BP.
XX
AC MI0014148;
XX
DE Homo sapiens miR-3130-2 stem-loop
XX
RN [1]
RX PUBMED; 20300190.
RA Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons
RA PG, Schmidt C, Sturm RA, Hayward NK;
RT "Characterization of the Melanoma miRNAome by Deep Sequencing";
RL PLoS One. 5:e9685(2010).
XX
RN [2]
RX PUBMED; 20224791.
RA Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain
RA MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM,
RA Gunaratne PH;
RT "Discovery of novel microRNAs in female reproductive tract using next
RT generation sequencing";
RL PLoS One. 5:e9637(2010).
XX
RN [3]
RX PUBMED; 21199797.
RA Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman
RA N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C;
RT "Identification of new microRNAs in paired normal and tumor breast tissue
RT suggests a dual role for the ERBB2/Her2 gene";
RL Cancer Res. 71:78-86(2011).
XX
DR ENTREZGENE; 100423002; MIR3130-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0014995"
FT /product="hsa-miR-3130-5p"
FT /evidence=experimental
FT /experiment="Illumina [1,3]"
FT miRNA 44..64
FT /accession="MIMAT0014994"
FT /product="hsa-miR-3130-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-3]"
XX
SQ Sequence 75 BP; 18 A; 21 C; 20 G; 0 T; 16 other;
cuugucaugu cuuacccagu cuccggugca gccuugacaa caggcugcac cggagacugg 60
guaagacaug acaag 75
//
ID hsa-mir-3140 standard; RNA; HSA; 90 BP.
XX
AC MI0014163;
XX
DE Homo sapiens miR-3140 stem-loop
XX
RN [1]
RX PUBMED; 20300190.
RA Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons
RA PG, Schmidt C, Sturm RA, Hayward NK;
RT "Characterization of the Melanoma miRNAome by Deep Sequencing";
RL PLoS One. 5:e9685(2010).
XX
RN [2]
RX PUBMED; 20224791.
RA Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain
RA MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM,
RA Gunaratne PH;
RT "Discovery of novel microRNAs in female reproductive tract using next
RT generation sequencing";
RL PLoS One. 5:e9637(2010).
XX
RN [3]
RX PUBMED; 21199797.
RA Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman
RA N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C;
RT "Identification of new microRNAs in paired normal and tumor breast tissue
RT suggests a dual role for the ERBB2/Her2 gene";
RL Cancer Res. 71:78-86(2011).
XX
RN [4]
RX PUBMED; 21606961.
RA Schotte D, Akbari Moqadam F, Lange-Turenhout EA, Chen C, van Ijcken WF,
RA Pieters R, den Boer ML;
RT "Discovery of new microRNAs by small RNAome deep sequencing in childhood
RT acute lymphoblastic leukemia";
RL Leukemia. 25:1389-1399(2011).
XX
DR ENTREZGENE; 100422896; MIR3140.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0019204"
FT /product="hsa-miR-3140-5p"
FT /evidence=experimental
FT /experiment="Illumina [3-4]"
FT miRNA 60..81
FT /accession="MIMAT0015008"
FT /product="hsa-miR-3140-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-4]"
XX
SQ Sequence 90 BP; 27 A; 12 C; 21 G; 0 T; 30 other;
ccucuugagg uaccugaauu accaaaagcu uuauguauuc ugaaguuauu gaaaauaaga 60
gcuuuuggga auucagguag uucaggagug 90
//
ID hsa-mir-3144 standard; RNA; HSA; 79 BP.
XX
AC MI0014169;
XX
DE Homo sapiens miR-3144 stem-loop
XX
RN [1]
RX PUBMED; 20300190.
RA Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons
RA PG, Schmidt C, Sturm RA, Hayward NK;
RT "Characterization of the Melanoma miRNAome by Deep Sequencing";
RL PLoS One. 5:e9685(2010).
XX
RN [2]
RX PUBMED; 20224791.
RA Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain
RA MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM,
RA Gunaratne PH;
RT "Discovery of novel microRNAs in female reproductive tract using next
RT generation sequencing";
RL PLoS One. 5:e9637(2010).
XX
DR ENTREZGENE; 100422951; MIR3144.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0015014"
FT /product="hsa-miR-3144-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 48..69
FT /accession="MIMAT0015015"
FT /product="hsa-miR-3144-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
XX
SQ Sequence 79 BP; 26 A; 14 C; 14 G; 0 T; 25 other;
aacuacacuu uaaggggacc aaagagauau auagauauca gcuaccuaua uaccuguucg 60
gucucuuuaa aguguaguu 79
//
ID hsa-mir-3145 standard; RNA; HSA; 82 BP.
XX
AC MI0014170;
XX
DE Homo sapiens miR-3145 stem-loop
XX
RN [1]
RX PUBMED; 20300190.
RA Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons
RA PG, Schmidt C, Sturm RA, Hayward NK;
RT "Characterization of the Melanoma miRNAome by Deep Sequencing";
RL PLoS One. 5:e9685(2010).
XX
RN [2]
RX PUBMED; 21199797.
RA Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman
RA N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C;
RT "Identification of new microRNAs in paired normal and tumor breast tissue
RT suggests a dual role for the ERBB2/Her2 gene";
RL Cancer Res. 71:78-86(2011).
XX
DR ENTREZGENE; 100423001; MIR3145.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0019205"
FT /product="hsa-miR-3145-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 49..72
FT /accession="MIMAT0015016"
FT /product="hsa-miR-3145-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
XX
SQ Sequence 82 BP; 28 A; 11 C; 15 G; 0 T; 28 other;
uauaugaguu caacuccaaa cacucaaaac ucauuguuga auggaaugag auauuuugag 60
uguuuggaau ugaacucgua ua 82
//
ID hsa-mir-3157 standard; RNA; HSA; 85 BP.
XX
AC MI0014185;
XX
DE Homo sapiens miR-3157 stem-loop
XX
RN [1]
RX PUBMED; 20300190.
RA Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons
RA PG, Schmidt C, Sturm RA, Hayward NK;
RT "Characterization of the Melanoma miRNAome by Deep Sequencing";
RL PLoS One. 5:e9685(2010).
XX
RN [2]
RX PUBMED; 21199797.
RA Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman
RA N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C;
RT "Identification of new microRNAs in paired normal and tumor breast tissue
RT suggests a dual role for the ERBB2/Her2 gene";
RL Cancer Res. 71:78-86(2011).
XX
DR ENTREZGENE; 100422892; MIR3157.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0015031"
FT /product="hsa-miR-3157-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 58..79
FT /accession="MIMAT0019210"
FT /product="hsa-miR-3157-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 85 BP; 15 A; 22 C; 26 G; 0 T; 22 other;
gggaagggcu ucagccaggc uagugcaguc ugcuuugugc caacacuggg gugaugacug 60
cccuagucua gcugaagcuu uuccc 85
//
ID hsa-mir-3158-1 standard; RNA; HSA; 81 BP.
XX
AC MI0014186;
XX
DE Homo sapiens miR-3158-1 stem-loop
XX
RN [1]
RX PUBMED; 20300190.
RA Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons
RA PG, Schmidt C, Sturm RA, Hayward NK;
RT "Characterization of the Melanoma miRNAome by Deep Sequencing";
RL PLoS One. 5:e9685(2010).
XX
RN [2]
RX PUBMED; 20224791.
RA Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain
RA MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM,
RA Gunaratne PH;
RT "Discovery of novel microRNAs in female reproductive tract using next
RT generation sequencing";
RL PLoS One. 5:e9637(2010).
XX
RN [3]
RX PUBMED; 21199797.
RA Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman
RA N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C;
RT "Identification of new microRNAs in paired normal and tumor breast tissue
RT suggests a dual role for the ERBB2/Her2 gene";
RL Cancer Res. 71:78-86(2011).
XX
DR ENTREZGENE; 100422900; MIR3158-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0019211"
FT /product="hsa-miR-3158-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 50..71
FT /accession="MIMAT0015032"
FT /product="hsa-miR-3158-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-3]"
XX
SQ Sequence 81 BP; 16 A; 22 C; 24 G; 0 T; 19 other;
auucaggccg guccugcaga gaggaagccc uucugcuuac agguauugga agggcuuccu 60
cucugcagga ccggccugaa u 81
//
ID hsa-mir-3158-2 standard; RNA; HSA; 81 BP.
XX
AC MI0014187;
XX
DE Homo sapiens miR-3158-2 stem-loop
XX
RN [1]
RX PUBMED; 20300190.
RA Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons
RA PG, Schmidt C, Sturm RA, Hayward NK;
RT "Characterization of the Melanoma miRNAome by Deep Sequencing";
RL PLoS One. 5:e9685(2010).
XX
RN [2]
RX PUBMED; 20224791.
RA Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain
RA MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM,
RA Gunaratne PH;
RT "Discovery of novel microRNAs in female reproductive tract using next
RT generation sequencing";
RL PLoS One. 5:e9637(2010).
XX
DR ENTREZGENE; 100423033; MIR3158-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0019211"
FT /product="hsa-miR-3158-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0015032"
FT /product="hsa-miR-3158-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
XX
SQ Sequence 81 BP; 19 A; 24 C; 22 G; 0 T; 16 other;
auucaggccg guccugcaga gaggaagccc uuccaauacc uguaagcaga agggcuuccu 60
cucugcagga ccggccugaa u 81
//
ID hsa-mir-3173 standard; RNA; HSA; 68 BP.
XX
AC MI0014204;
XX
DE Homo sapiens miR-3173 stem-loop
XX
RN [1]
RX PUBMED; 20300190.
RA Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons
RA PG, Schmidt C, Sturm RA, Hayward NK;
RT "Characterization of the Melanoma miRNAome by Deep Sequencing";
RL PLoS One. 5:e9685(2010).
XX
RN [2]
RX PUBMED; 21199797.
RA Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman
RA N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C;
RT "Identification of new microRNAs in paired normal and tumor breast tissue
RT suggests a dual role for the ERBB2/Her2 gene";
RL Cancer Res. 71:78-86(2011).
XX
RN [3]
RX PUBMED; 22454130.
RA Dannemann M, Prufer K, Lizano E, Nickel B, Burbano HA, Kelso J;
RT "Transcription factors are targeted by differentially expressed miRNAs in
RT primates";
RL Genome Biol Evol. 4:552-564(2012).
XX
DR ENTREZGENE; 100422981; MIR3173.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0019214"
FT /product="hsa-miR-3173-5p"
FT /evidence=experimental
FT /experiment="Illumina [2-3]"
FT miRNA 43..64
FT /accession="MIMAT0015048"
FT /product="hsa-miR-3173-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-3]"
XX
SQ Sequence 68 BP; 16 A; 15 C; 18 G; 0 T; 19 other;
ucccugcccu gccuguuuuc uccuuuguga uuuuaugaga acaaaggagg aaauaggcag 60
gccaggga 68
//
ID hsa-mir-323b standard; RNA; HSA; 82 BP.
XX
AC MI0014206;
XX
DE Homo sapiens miR-323b stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20300190.
RA Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons
RA PG, Schmidt C, Sturm RA, Hayward NK;
RT "Characterization of the Melanoma miRNAome by Deep Sequencing";
RL PLoS One. 5:e9685(2010).
XX
DR ENTREZGENE; 100422958; MIR323B.
XX
CC miR-323b-5p was previously named miR-453 here and in [1,2], but appears to
CC be processed from the same hairpin as miR-332b-3p identified in [3].
CC Entries for mir-323b and mir-453 are merged here.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0001630"
FT /product="hsa-miR-323b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT miRNA 51..72
FT /accession="MIMAT0015050"
FT /product="hsa-miR-323b-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 82 BP; 16 A; 17 C; 23 G; 0 T; 26 other;
ugguacucgg agggagguug uccgugguga guucgcauua uuuaaugaug cccaauacac 60
ggucgaccuc uuuucgguau ca 82
//
ID hsa-mir-3177 standard; RNA; HSA; 82 BP.
XX
AC MI0014211;
XX
DE Homo sapiens miR-3177 stem-loop
XX
RN [1]
RX PUBMED; 20300190.
RA Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons
RA PG, Schmidt C, Sturm RA, Hayward NK;
RT "Characterization of the Melanoma miRNAome by Deep Sequencing";
RL PLoS One. 5:e9685(2010).
XX
RN [2]
RX PUBMED; 21199797.
RA Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman
RA N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C;
RT "Identification of new microRNAs in paired normal and tumor breast tissue
RT suggests a dual role for the ERBB2/Her2 gene";
RL Cancer Res. 71:78-86(2011).
XX
RN [3]
RX PUBMED; 21606961.
RA Schotte D, Akbari Moqadam F, Lange-Turenhout EA, Chen C, van Ijcken WF,
RA Pieters R, den Boer ML;
RT "Discovery of new microRNAs by small RNAome deep sequencing in childhood
RT acute lymphoblastic leukemia";
RL Leukemia. 25:1389-1399(2011).
XX
DR ENTREZGENE; 100423012; MIR3177.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0019215"
FT /product="hsa-miR-3177-5p"
FT /evidence=experimental
FT /experiment="Illumina [2-3]"
FT miRNA 54..74
FT /accession="MIMAT0015054"
FT /product="hsa-miR-3177-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-3]"
XX
SQ Sequence 82 BP; 15 A; 25 C; 27 G; 0 T; 15 other;
ccacgugcca uguguacaca cgugccaggc gcugucuuga gacauucgcg cagugcacgg 60
cacuggggac acguggcacu gg 82
//
ID hsa-mir-3180-1 standard; RNA; HSA; 94 BP.
XX
AC MI0014214;
XX
DE Homo sapiens miR-3180-1 stem-loop
XX
RN [1]
RX PUBMED; 20300190.
RA Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons
RA PG, Schmidt C, Sturm RA, Hayward NK;
RT "Characterization of the Melanoma miRNAome by Deep Sequencing";
RL PLoS One. 5:e9685(2010).
XX
RN [2]
RX PUBMED; 20224791.
RA Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain
RA MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM,
RA Gunaratne PH;
RT "Discovery of novel microRNAs in female reproductive tract using next
RT generation sequencing";
RL PLoS One. 5:e9637(2010).
XX
RN [3]
RX PUBMED; 21199797.
RA Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman
RA N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C;
RT "Identification of new microRNAs in paired normal and tumor breast tissue
RT suggests a dual role for the ERBB2/Her2 gene";
RL Cancer Res. 71:78-86(2011).
XX
DR ENTREZGENE; 100422870; MIR3180-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..42
FT /accession="MIMAT0015057"
FT /product="hsa-miR-3180-5p"
FT /evidence=experimental
FT /experiment="Illumina [1,3]"
FT miRNA 62..83
FT /accession="MIMAT0015058"
FT /product="hsa-miR-3180-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-3]"
XX
SQ Sequence 94 BP; 12 A; 36 C; 35 G; 0 T; 11 other;
cagugcgacg ggcggagcuu ccagacgcuc cgccccacgu cgcaugcgcc ccgggaaagc 60
guggggcgga gcuuccggag gccccgcccu gcug 94
//
ID hsa-mir-3180-2 standard; RNA; HSA; 88 BP.
XX
AC MI0014215;
XX
DE Homo sapiens miR-3180-2 stem-loop
XX
RN [1]
RX PUBMED; 20300190.
RA Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons
RA PG, Schmidt C, Sturm RA, Hayward NK;
RT "Characterization of the Melanoma miRNAome by Deep Sequencing";
RL PLoS One. 5:e9685(2010).
XX
RN [2]
RX PUBMED; 21199797.
RA Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman
RA N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C;
RT "Identification of new microRNAs in paired normal and tumor breast tissue
RT suggests a dual role for the ERBB2/Her2 gene";
RL Cancer Res. 71:78-86(2011).
XX
DR ENTREZGENE; 100422956; MIR3180-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..38
FT /accession="MIMAT0015057"
FT /product="hsa-miR-3180-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 58..79
FT /accession="MIMAT0015058"
FT /product="hsa-miR-3180-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
XX
SQ Sequence 88 BP; 11 A; 35 C; 33 G; 0 T; 9 other;
gcgacgggcg gagcuuccag acgcuccgcc ccacgucgca ugcgccccgg gaaagcgugg 60
ggcggagcuu ccggaggccc cgcccugc 88
//
ID hsa-mir-3180-3 standard; RNA; HSA; 94 BP.
XX
AC MI0014217;
XX
DE Homo sapiens miR-3180-3 stem-loop
XX
RN [1]
RX PUBMED; 20300190.
RA Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons
RA PG, Schmidt C, Sturm RA, Hayward NK;
RT "Characterization of the Melanoma miRNAome by Deep Sequencing";
RL PLoS One. 5:e9685(2010).
XX
DR ENTREZGENE; 100422836; MIR3180-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..42
FT /accession="MIMAT0015057"
FT /product="hsa-miR-3180-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 62..83
FT /accession="MIMAT0015058"
FT /product="hsa-miR-3180-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 94 BP; 12 A; 36 C; 35 G; 0 T; 11 other;
cagugcgacg ggcggagcuu ccagacgcuc cgccccacgu cgcaugcgcc ccgggaaagc 60
guggggcgga gcuuccggag gccccgcccu gcug 94
//
ID hsa-mir-3065 standard; RNA; HSA; 79 BP.
XX
AC MI0014228;
XX
DE Homo sapiens miR-3065 stem-loop
XX
RN [1]
RX PUBMED; 20300190.
RA Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons
RA PG, Schmidt C, Sturm RA, Hayward NK;
RT "Characterization of the Melanoma miRNAome by Deep Sequencing";
RL PLoS One. 5:e9685(2010).
XX
RN [2]
RX PUBMED; 20483914.
RA Meiri E, Levy A, Benjamin H, Ben-David M, Cohen L, Dov A, Dromi N, Elyakim
RA E, Yerushalmi N, Zion O, Lithwick-Yanai G, Sitbon E;
RT "Discovery of microRNAs and other small RNAs in solid tumors";
RL Nucleic Acids Res. 38:6234-6246(2010).
XX
RN [3]
RX PUBMED; 21199797.
RA Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman
RA N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C;
RT "Identification of new microRNAs in paired normal and tumor breast tissue
RT suggests a dual role for the ERBB2/Her2 gene";
RL Cancer Res. 71:78-86(2011).
XX
DR ENTREZGENE; 100422915; MIR3065.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..32
FT /accession="MIMAT0015066"
FT /product="hsa-miR-3065-5p"
FT /evidence=experimental
FT /experiment="Illumina [1,3], 454 [2]"
FT miRNA 50..72
FT /accession="MIMAT0015378"
FT /product="hsa-miR-3065-3p"
FT /evidence=experimental
FT /experiment="Illumina [1,3], 454 [2]"
XX
SQ Sequence 79 BP; 21 A; 21 C; 19 G; 0 T; 18 other;
cugcccucuu caacaaaauc acugaugcug gagucgccug agucaucacu cagcaccagg 60
auauuguugg agaggacag 79
//
ID hsa-mir-3187 standard; RNA; HSA; 70 BP.
XX
AC MI0014231;
XX
DE Homo sapiens miR-3187 stem-loop
XX
RN [1]
RX PUBMED; 20300190.
RA Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons
RA PG, Schmidt C, Sturm RA, Hayward NK;
RT "Characterization of the Melanoma miRNAome by Deep Sequencing";
RL PLoS One. 5:e9685(2010).
XX
RN [2]
RX PUBMED; 21199797.
RA Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman
RA N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C;
RT "Identification of new microRNAs in paired normal and tumor breast tissue
RT suggests a dual role for the ERBB2/Her2 gene";
RL Cancer Res. 71:78-86(2011).
XX
DR ENTREZGENE; 100422854; MIR3187.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0019216"
FT /product="hsa-miR-3187-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 44..63
FT /accession="MIMAT0015069"
FT /product="hsa-miR-3187-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
XX
SQ Sequence 70 BP; 7 A; 21 C; 28 G; 0 T; 14 other;
gcuggcccug ggcagcgugu ggcugaaggu caccauguuc uccuuggcca uggggcugcg 60
cggggccagc 70
//
ID hsa-mir-3189 standard; RNA; HSA; 73 BP.
XX
AC MI0014233;
XX
DE Homo sapiens miR-3189 stem-loop
XX
RN [1]
RX PUBMED; 20300190.
RA Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons
RA PG, Schmidt C, Sturm RA, Hayward NK;
RT "Characterization of the Melanoma miRNAome by Deep Sequencing";
RL PLoS One. 5:e9685(2010).
XX
RN [2]
RX PUBMED; 21199797.
RA Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman
RA N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C;
RT "Identification of new microRNAs in paired normal and tumor breast tissue
RT suggests a dual role for the ERBB2/Her2 gene";
RL Cancer Res. 71:78-86(2011).
XX
DR ENTREZGENE; 100422943; MIR3189.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..33
FT /accession="MIMAT0019217"
FT /product="hsa-miR-3189-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 46..66
FT /accession="MIMAT0015071"
FT /product="hsa-miR-3189-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
XX
SQ Sequence 73 BP; 10 A; 21 C; 23 G; 0 T; 19 other;
gccucaguug ccccaucugu gcccugggua ggaauauccu ggauccccuu gggucugaug 60
ggguagccga ugc 73
//
ID hsa-mir-3194 standard; RNA; HSA; 73 BP.
XX
AC MI0014239;
XX
DE Homo sapiens miR-3194 stem-loop
XX
RN [1]
RX PUBMED; 20300190.
RA Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons
RA PG, Schmidt C, Sturm RA, Hayward NK;
RT "Characterization of the Melanoma miRNAome by Deep Sequencing";
RL PLoS One. 5:e9685(2010).
XX
RN [2]
RX PUBMED; 21199797.
RA Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman
RA N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C;
RT "Identification of new microRNAs in paired normal and tumor breast tissue
RT suggests a dual role for the ERBB2/Her2 gene";
RL Cancer Res. 71:78-86(2011).
XX
DR ENTREZGENE; 100422889; MIR3194.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0015078"
FT /product="hsa-miR-3194-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 45..66
FT /accession="MIMAT0019218"
FT /product="hsa-miR-3194-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 73 BP; 11 A; 25 C; 26 G; 0 T; 11 other;
agguggcagg gccagccacc aggagggcug cgugccaccc gggcagcucu gcugcucacu 60
ggcaguguca ccu 73
//
ID hsa-mir-548x standard; RNA; HSA; 75 BP.
XX
AC MI0014244;
XX
DE Homo sapiens miR-548x stem-loop
XX
RN [1]
RX PUBMED; 20300190.
RA Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons
RA PG, Schmidt C, Sturm RA, Hayward NK;
RT "Characterization of the Melanoma miRNAome by Deep Sequencing";
RL PLoS One. 5:e9685(2010).
XX
DR ENTREZGENE; 100422920; MIR548X.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0022733"
FT /product="hsa-miR-548x-5p"
FT /evidence=not_experimental
FT miRNA 46..65
FT /accession="MIMAT0015081"
FT /product="hsa-miR-548x-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 75 BP; 24 A; 14 C; 11 G; 0 T; 26 other;
agguuagugc aaaaguaauu gcaguuuuug cguuacuuuc aaucguaaaa acugcaauua 60
cuuucacacc aaucu 75
//
ID hsa-mir-3200 standard; RNA; HSA; 85 BP.
XX
AC MI0014249;
XX
DE Homo sapiens miR-3200 stem-loop
XX
RN [1]
RX PUBMED; 20300190.
RA Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons
RA PG, Schmidt C, Sturm RA, Hayward NK;
RT "Characterization of the Melanoma miRNAome by Deep Sequencing";
RL PLoS One. 5:e9685(2010).
XX
RN [2]
RX PUBMED; 20224791.
RA Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain
RA MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM,
RA Gunaratne PH;
RT "Discovery of novel microRNAs in female reproductive tract using next
RT generation sequencing";
RL PLoS One. 5:e9637(2010).
XX
RN [3]
RX PUBMED; 20459774.
RA Witten D, Tibshirani R, Gu SG, Fire A, Lui WO;
RT "Ultra-high throughput sequencing-based small RNA discovery and discrete
RT statistical biomarker analysis in a collection of cervical tumours and
RT matched controls";
RL BMC Biol. 8:58(2010).
XX
RN [4]
RX PUBMED; 20532037.
RA Hansen TB, Bramsen JB, Kjems J;
RT "Re-inspection of small RNA sequence datasets reveals several novel human
RT miRNA genes";
RL PLoS One. 5:e10961(2010).
XX
RN [5]
RX PUBMED; 21199797.
RA Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman
RA N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C;
RT "Identification of new microRNAs in paired normal and tumor breast tissue
RT suggests a dual role for the ERBB2/Her2 gene";
RL Cancer Res. 71:78-86(2011).
XX
DR ENTREZGENE; 100422912; MIR3200.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0017392"
FT /product="hsa-miR-3200-5p"
FT /evidence=experimental
FT /experiment="Illumina [2-3,5], Northern [4]"
FT miRNA 54..75
FT /accession="MIMAT0015085"
FT /product="hsa-miR-3200-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-3,5], Northern [4]"
XX
SQ Sequence 85 BP; 17 A; 23 C; 25 G; 0 T; 20 other;
gguggucgag ggaaucugag aaggcgcaca agguuugugu ccaauacagu ccacaccuug 60
cgcuacucag gucugcucgu gcccu 85
//
ID hsa-mir-514b standard; RNA; HSA; 80 BP.
XX
AC MI0014251;
XX
DE Homo sapiens miR-514b stem-loop
XX
RN [1]
RX PUBMED; 20300190.
RA Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons
RA PG, Schmidt C, Sturm RA, Hayward NK;
RT "Characterization of the Melanoma miRNAome by Deep Sequencing";
RL PLoS One. 5:e9685(2010).
XX
RN [2]
RX PUBMED; 20224791.
RA Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain
RA MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM,
RA Gunaratne PH;
RT "Discovery of novel microRNAs in female reproductive tract using next
RT generation sequencing";
RL PLoS One. 5:e9637(2010).
XX
RN [3]
RX PUBMED; 20459774.
RA Witten D, Tibshirani R, Gu SG, Fire A, Lui WO;
RT "Ultra-high throughput sequencing-based small RNA discovery and discrete
RT statistical biomarker analysis in a collection of cervical tumours and
RT matched controls";
RL BMC Biol. 8:58(2010).
XX
RN [4]
RX PUBMED; 21199797.
RA Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman
RA N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C;
RT "Identification of new microRNAs in paired normal and tumor breast tissue
RT suggests a dual role for the ERBB2/Her2 gene";
RL Cancer Res. 71:78-86(2011).
XX
DR ENTREZGENE; 100422847; MIR514B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0015087"
FT /product="hsa-miR-514b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-4]"
FT miRNA 50..70
FT /accession="MIMAT0015088"
FT /product="hsa-miR-514b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1,3-4]"
XX
SQ Sequence 80 BP; 23 A; 13 C; 21 G; 0 T; 23 other;
caugugguac ucuucucaag agggaggcaa ucauguguaa uuagauauga uugacaccuc 60
ugugagugga guaacacaug 80
//
ID bta-mir-2284w standard; RNA; BTA; 96 BP.
XX
AC MI0014497;
XX
DE Bos taurus miR-2284w stem-loop
XX
RN [1]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
RN [2]
RX PUBMED; 20423511.
RA Jin W, Dodson MV, Moore SS, Basarab JA, Guan LL;
RT "Characterization of microRNA expression in bovine adipose tissues: a
RT potential regulatory mechanism of subcutaneous adipose tissue
RT development";
RL BMC Mol Biol. 11:29(2010).
XX
RN [3]
RX PUBMED; 21912509.
RA Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao
RA Y, Hou M, Zhong J;
RT "Solexa sequencing of novel and differentially expressed microRNAs in
RT testicular and ovarian tissues in Holstein cattle";
RL Int J Biol Sci. 7:1016-1026(2011).
XX
DR ENTREZGENE; 100526411; MIR2284W.
XX
CC Jin et al. predicted this miRNA bioinformatically in [1], and validated
CC its expression by qPCR in [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0017393"
FT /product="bta-miR-2284w"
FT /evidence=experimental
FT /experiment="qPCR [2], Illumina [3]"
XX
SQ Sequence 96 BP; 25 A; 19 C; 18 G; 0 T; 34 other;
uuucaauuau uggguuggcc aagaguuugu ucggguuucu ccauaagcug uauagaaaaa 60
ccucaaugaa cucuuuggcc aacccaauau uuugcu 96
//
ID bta-mir-3431 standard; RNA; BTA; 97 BP.
XX
AC MI0014498;
XX
DE Bos taurus miR-3431 stem-loop
XX
RN [1]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
RN [2]
RX PUBMED; 20423511.
RA Jin W, Dodson MV, Moore SS, Basarab JA, Guan LL;
RT "Characterization of microRNA expression in bovine adipose tissues: a
RT potential regulatory mechanism of subcutaneous adipose tissue
RT development";
RL BMC Mol Biol. 11:29(2010).
XX
RN [3]
RX PUBMED; 21912509.
RA Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao
RA Y, Hou M, Zhong J;
RT "Solexa sequencing of novel and differentially expressed microRNAs in
RT testicular and ovarian tissues in Holstein cattle";
RL Int J Biol Sci. 7:1016-1026(2011).
XX
DR ENTREZGENE; 100526412; MIR3431.
XX
CC Jin et al. predicted this miRNA bioinformatically in [1], and validated
CC its expression by qPCR in [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0017394"
FT /product="bta-miR-3431"
FT /evidence=experimental
FT /experiment="qPCR [2], Illumina [3]"
XX
SQ Sequence 97 BP; 29 A; 22 C; 19 G; 0 T; 27 other;
auacccaaug aaugcgaaaa ccucagucag ccuuguggau guauguucug cagaccugac 60
aucuagagga cugacugaaa uuuucacuuu cagcuaa 97
//
ID bta-mir-3432a-2 standard; RNA; BTA; 97 BP.
XX
AC MI0014501;
XX
DE Bos taurus miR-3432a-2 stem-loop
XX
RN [1]
RX PUBMED; 19758457.
RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL;
RT "Characterization of bovine miRNAs by sequencing and bioinformatics
RT analysis";
RL BMC Mol Biol. 10:90(2009).
XX
RN [2]
RX PUBMED; 20423511.
RA Jin W, Dodson MV, Moore SS, Basarab JA, Guan LL;
RT "Characterization of microRNA expression in bovine adipose tissues: a
RT potential regulatory mechanism of subcutaneous adipose tissue
RT development";
RL BMC Mol Biol. 11:29(2010).
XX
RN [3]
RX PUBMED; 21912509.
RA Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao
RA Y, Hou M, Zhong J;
RT "Solexa sequencing of novel and differentially expressed microRNAs in
RT testicular and ovarian tissues in Holstein cattle";
RL Int J Biol Sci. 7:1016-1026(2011).
XX
DR ENTREZGENE; 100526415; MIR3432-2.
XX
CC Jin et al. predicted this miRNA bioinformatically in [1], and validated
CC its expression by qPCR in [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0017396"
FT /product="bta-miR-3432a"
FT /evidence=experimental
FT /experiment="qPCR [2], Illumina [3]"
XX
SQ Sequence 97 BP; 26 A; 19 C; 27 G; 0 T; 25 other;
aaacagccga cguugcggca ugcgggaucu uuaguugugg ugugugaauu cuuaguugca 60
gcaacuaaag aucccucagg cugcaaugaa gaucaga 97
//
ID aly-MIR156a standard; RNA; ALY; 184 BP.
XX
AC MI0014502;
XX
DE Arabidopsis lyrata miR156a stem-loop
XX
RN [1]
RX PUBMED; 20407027.
RA Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S,
RA Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC;
RT "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana";
RL Plant Cell. 22:1074-1089(2010).
XX
RN [2]
RX PUBMED; 20407023.
RA Ma Z, Coruh C, Axtell MJ;
RT "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA
RT loci within the Arabidopsis genus";
RL Plant Cell. 22:1090-1103(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..68
FT /accession="MIMAT0017397"
FT /product="aly-miR156a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
FT miRNA 111..132
FT /accession="MIMAT0017398"
FT /product="aly-miR156a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
XX
SQ Sequence 184 BP; 43 A; 40 C; 45 G; 0 T; 56 other;
ggguugguug ugagugaaag aguugggaca agagaaacgc aaagaaacug acagaagaga 60
gugagcacac aaaggcaauu ugcauaucau ugcauuugcu ucucuugcgu gcucacugcu 120
cuuucuguca gauuccggug cugaucucuu uggccugucc ucgaucucuu ugucucaauc 180
ucuc 184
//
ID aly-MIR156b standard; RNA; ALY; 109 BP.
XX
AC MI0014503;
XX
DE Arabidopsis lyrata miR156b stem-loop
XX
RN [1]
RX PUBMED; 20407027.
RA Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S,
RA Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC;
RT "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana";
RL Plant Cell. 22:1074-1089(2010).
XX
RN [2]
RX PUBMED; 20407023.
RA Ma Z, Coruh C, Axtell MJ;
RT "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA
RT loci within the Arabidopsis genus";
RL Plant Cell. 22:1090-1103(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..32
FT /accession="MIMAT0017399"
FT /product="aly-miR156b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
FT miRNA 73..94
FT /accession="MIMAT0017400"
FT /product="aly-miR156b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
XX
SQ Sequence 109 BP; 25 A; 23 C; 25 G; 0 T; 36 other;
aacagagaaa acugacagaa gagagugagc acaugcaggc ucuguuaugu gucuauaacu 60
uugcgugugc gugcucaccu cucuuucugu caguugcuua ucucuuguu 109
//
ID aly-MIR156c standard; RNA; ALY; 102 BP.
XX
AC MI0014504;
XX
DE Arabidopsis lyrata miR156c stem-loop
XX
RN [1]
RX PUBMED; 20407027.
RA Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S,
RA Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC;
RT "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana";
RL Plant Cell. 22:1074-1089(2010).
XX
RN [2]
RX PUBMED; 20407023.
RA Ma Z, Coruh C, Axtell MJ;
RT "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA
RT loci within the Arabidopsis genus";
RL Plant Cell. 22:1090-1103(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..30
FT /accession="MIMAT0017401"
FT /product="aly-miR156c-5p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
FT miRNA 74..95
FT /accession="MIMAT0017402"
FT /product="aly-miR156c-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
XX
SQ Sequence 102 BP; 25 A; 24 C; 24 G; 0 T; 29 other;
gcauagaaac ugacagaaga gagugagcac acaaaggcac uuugcauguu cgaugcauuu 60
gcuucucuug cgugcucacu gcucuaucug ucagauuucg gc 102
//
ID aly-MIR156d standard; RNA; ALY; 118 BP.
XX
AC MI0014505;
XX
DE Arabidopsis lyrata miR156d stem-loop
XX
RN [1]
RX PUBMED; 20407027.
RA Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S,
RA Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC;
RT "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana";
RL Plant Cell. 22:1074-1089(2010).
XX
RN [2]
RX PUBMED; 20407023.
RA Ma Z, Coruh C, Axtell MJ;
RT "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA
RT loci within the Arabidopsis genus";
RL Plant Cell. 22:1090-1103(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..36
FT /accession="MIMAT0017403"
FT /product="aly-miR156d-5p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
FT miRNA 84..104
FT /accession="MIMAT0017404"
FT /product="aly-miR156d-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
XX
SQ Sequence 118 BP; 32 A; 18 C; 29 G; 0 T; 39 other;
augggggaaa agaaguugac agaagagagu gagcacacaa aggggaaguu guauagaauu 60
uuuguauaug guugcuuuug cgugcucacu cucuuucugu cauaacuucu ccuuucau 118
//
ID aly-MIR158a standard; RNA; ALY; 95 BP.
XX
AC MI0014514;
XX
DE Arabidopsis lyrata miR158a stem-loop
XX
RN [1]
RX PUBMED; 20407027.
RA Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S,
RA Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC;
RT "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana";
RL Plant Cell. 22:1074-1089(2010).
XX
RN [2]
RX PUBMED; 20407023.
RA Ma Z, Coruh C, Axtell MJ;
RT "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA
RT loci within the Arabidopsis genus";
RL Plant Cell. 22:1090-1103(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..38
FT /accession="MIMAT0017421"
FT /product="aly-miR158a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
FT miRNA 61..80
FT /accession="MIMAT0017422"
FT /product="aly-miR158a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
XX
SQ Sequence 95 BP; 25 A; 21 C; 19 G; 0 T; 30 other;
acgucaucuc ugugcuucuu ugucuacaau uuuggaaaaa guggugacgc cauugcucuu 60
ucccaaaugu agacaaagca auaccgugau gacgu 95
//
ID aly-MIR159a standard; RNA; ALY; 222 BP.
XX
AC MI0014515;
XX
DE Arabidopsis lyrata miR159a stem-loop
XX
RN [1]
RX PUBMED; 20407027.
RA Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S,
RA Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC;
RT "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana";
RL Plant Cell. 22:1074-1089(2010).
XX
RN [2]
RX PUBMED; 20407023.
RA Ma Z, Coruh C, Axtell MJ;
RT "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA
RT loci within the Arabidopsis genus";
RL Plant Cell. 22:1090-1103(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0017423"
FT /product="aly-miR159a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
FT miRNA 183..203
FT /accession="MIMAT0017424"
FT /product="aly-miR159a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
XX
SQ Sequence 222 BP; 71 A; 40 C; 46 G; 0 T; 65 other;
gagaaaaaaa aagauggaag uagagcuccu ugaaguucaa acgagaguug agcaggguaa 60
agaaaagcug cuaagcuaug gaucccauaa gcccuaaucc uuauaaagaa aaaaaaggau 120
uugguuauau ggcuugcaua ucucaggagc uuuaacuugc ccuuuaaugg cuuuuacucu 180
ucuuuggauu gaagggagcu cuacaucuuc uuucaccuuc uc 222
//
ID aly-MIR159b standard; RNA; ALY; 202 BP.
XX
AC MI0014516;
XX
DE Arabidopsis lyrata miR159b stem-loop
XX
RN [1]
RX PUBMED; 20407027.
RA Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S,
RA Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC;
RT "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana";
RL Plant Cell. 22:1074-1089(2010).
XX
RN [2]
RX PUBMED; 20407023.
RA Ma Z, Coruh C, Axtell MJ;
RT "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA
RT loci within the Arabidopsis genus";
RL Plant Cell. 22:1090-1103(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0017425"
FT /product="aly-miR159b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
FT miRNA 169..189
FT /accession="MIMAT0017426"
FT /product="aly-miR159b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
XX
SQ Sequence 202 BP; 59 A; 40 C; 42 G; 0 T; 61 other;
ggaagaagaa gaggaagagc uccuugaagu ucaauggagg guuuagcagg guaaaguaaa 60
gcugcuaagc uauggauccc auaaaccuua ucaaauucaa aauaaggauu uuuuauggau 120
uccauaucuc aggagcuuuc acuuaccccu uuaauggcuu cacucuucuu uggauugaag 180
ggagcucuuc aucucuaccu cc 202
//
ID aly-MIR167a standard; RNA; ALY; 138 BP.
XX
AC MI0014539;
XX
DE Arabidopsis lyrata miR167a stem-loop
XX
RN [1]
RX PUBMED; 20407027.
RA Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S,
RA Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC;
RT "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana";
RL Plant Cell. 22:1074-1089(2010).
XX
RN [2]
RX PUBMED; 20407023.
RA Ma Z, Coruh C, Axtell MJ;
RT "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA
RT loci within the Arabidopsis genus";
RL Plant Cell. 22:1090-1103(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..38
FT /accession="MIMAT0017473"
FT /product="aly-miR167a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
FT miRNA 102..122
FT /accession="MIMAT0017474"
FT /product="aly-miR167a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
XX
SQ Sequence 138 BP; 30 A; 29 C; 32 G; 0 T; 47 other;
ggugcaccgg caucugauga agcugccagc augaucuaau uagcuuucuu uauaucuguu 60
guuguguuuc auaacgaugg uuaagagaug agucucgauu agaucauguu cgcaguuuca 120
cccguugacu gucgcacc 138
//
ID aly-MIR168a standard; RNA; ALY; 155 BP.
XX
AC MI0014543;
XX
DE Arabidopsis lyrata miR168a stem-loop
XX
RN [1]
RX PUBMED; 20407027.
RA Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S,
RA Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC;
RT "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana";
RL Plant Cell. 22:1074-1089(2010).
XX
RN [2]
RX PUBMED; 20407023.
RA Ma Z, Coruh C, Axtell MJ;
RT "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA
RT loci within the Arabidopsis genus";
RL Plant Cell. 22:1090-1103(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0017481"
FT /product="aly-miR168a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
FT miRNA 109..129
FT /accession="MIMAT0017482"
FT /product="aly-miR168a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
XX
SQ Sequence 155 BP; 34 A; 39 C; 43 G; 0 T; 39 other;
gagucucacc gucgggcucg gauucgcuug gugcaggucg ggaaccaauu cggcugacac 60
agccucguga cuuuaaaacc uuuauugguu ugugagcagg gauuggaucc cgccuugcau 120
caacugaauc ggauccccga gguguaagaa aacuc 155
//
ID aly-MIR171b standard; RNA; ALY; 137 BP.
XX
AC MI0014561;
XX
DE Arabidopsis lyrata miR171b stem-loop
XX
RN [1]
RX PUBMED; 20407027.
RA Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S,
RA Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC;
RT "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana";
RL Plant Cell. 22:1074-1089(2010).
XX
RN [2]
RX PUBMED; 20407023.
RA Ma Z, Coruh C, Axtell MJ;
RT "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA
RT loci within the Arabidopsis genus";
RL Plant Cell. 22:1090-1103(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..46
FT /accession="MIMAT0017517"
FT /product="aly-miR171b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
FT miRNA 89..109
FT /accession="MIMAT0017518"
FT /product="aly-miR171b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
XX
SQ Sequence 137 BP; 40 A; 25 C; 34 G; 0 T; 38 other;
gagugauuuu auguaaggua acgcgagaua uuagugcggu ucaaucaaau agucguccuc 60
uuaacucaug gagaucggug uuguucgauu gagccgugcc aauaucacgc gguaaaccaa 120
aauggcaaag aucgauc 137
//
ID aly-MIR171c standard; RNA; ALY; 111 BP.
XX
AC MI0014562;
XX
DE Arabidopsis lyrata miR171c stem-loop
XX
RN [1]
RX PUBMED; 20407027.
RA Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S,
RA Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC;
RT "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana";
RL Plant Cell. 22:1074-1089(2010).
XX
RN [2]
RX PUBMED; 20407023.
RA Ma Z, Coruh C, Axtell MJ;
RT "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA
RT loci within the Arabidopsis genus";
RL Plant Cell. 22:1090-1103(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0017519"
FT /product="aly-miR171c-5p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
FT miRNA 77..97
FT /accession="MIMAT0017520"
FT /product="aly-miR171c-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
XX
SQ Sequence 111 BP; 30 A; 16 C; 25 G; 0 T; 40 other;
ggacaucgaa uacgagauau uggugcgguu caaucagaaa acuguacucu uuuguuuuaa 60
agaucgguuu guuugauuga gccgugccaa uaucacgugu uuaaauaguu u 111
//
ID aly-MIR172a standard; RNA; ALY; 149 BP.
XX
AC MI0014563;
XX
DE Arabidopsis lyrata miR172a stem-loop
XX
RN [1]
RX PUBMED; 20407027.
RA Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S,
RA Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC;
RT "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana";
RL Plant Cell. 22:1074-1089(2010).
XX
RN [2]
RX PUBMED; 20407023.
RA Ma Z, Coruh C, Axtell MJ;
RT "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA
RT loci within the Arabidopsis genus";
RL Plant Cell. 22:1090-1103(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..46
FT /accession="MIMAT0017521"
FT /product="aly-miR172a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
FT miRNA 99..119
FT /accession="MIMAT0017522"
FT /product="aly-miR172a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
XX
SQ Sequence 149 BP; 31 A; 36 C; 35 G; 0 T; 47 other;
ggagccacgg ucgcuguuug cugcuguggc aucaucaaga uucacaucug uugauggacg 60
guggugauuc gcucucccca aaguucucua ugaaaaugag aaucuugaug augcugcauc 120
ggcaaucaac ggcuauucuu uuucucucc 149
//
ID aly-MIR173a standard; RNA; ALY; 100 BP.
XX
AC MI0014568;
XX
DE Arabidopsis lyrata miR173a stem-loop
XX
RN [1]
RX PUBMED; 20407027.
RA Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S,
RA Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC;
RT "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana";
RL Plant Cell. 22:1074-1089(2010).
XX
RN [2]
RX PUBMED; 20407023.
RA Ma Z, Coruh C, Axtell MJ;
RT "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA
RT loci within the Arabidopsis genus";
RL Plant Cell. 22:1090-1103(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0017531"
FT /product="aly-miR173a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
FT miRNA 69..89
FT /accession="MIMAT0017532"
FT /product="aly-miR173a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
XX
SQ Sequence 100 BP; 25 A; 21 C; 24 G; 0 T; 30 other;
ggugacuaag uacuuucgcu ugcagagaga aaucacagug gucaaaaguu aaagucucuu 60
uccucuguga uucucugugc aaguggaaga gcuugcuccc 100
//
ID aly-MIR396a standard; RNA; ALY; 172 BP.
XX
AC MI0014581;
XX
DE Arabidopsis lyrata miR396a stem-loop
XX
RN [1]
RX PUBMED; 20407027.
RA Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S,
RA Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC;
RT "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana";
RL Plant Cell. 22:1074-1089(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0017557"
FT /product="aly-miR396a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 133..153
FT /accession="MIMAT0017558"
FT /product="aly-miR396a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 172 BP; 44 A; 33 C; 30 G; 0 T; 65 other;
ucuacgugac ccucucugua uucuuccaca gcuuucuuga acugcaaaac uucuucagau 60
uuguuuuuuu uauauauaug ucuuacgcau aaaauagugu uuuuguucac aucucugcuc 120
gauugauuug cgguucaaua aagcuguggg aagauacgga cagagucaaa ga 172
//
ID aly-MIR396b standard; RNA; ALY; 188 BP.
XX
AC MI0014582;
XX
DE Arabidopsis lyrata miR396b stem-loop
XX
RN [1]
RX PUBMED; 20407027.
RA Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S,
RA Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC;
RT "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana";
RL Plant Cell. 22:1074-1089(2010).
XX
RN [2]
RX PUBMED; 20407023.
RA Ma Z, Coruh C, Axtell MJ;
RT "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA
RT loci within the Arabidopsis genus";
RL Plant Cell. 22:1090-1103(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 32..52
FT /accession="MIMAT0017559"
FT /product="aly-miR396b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
FT miRNA 135..155
FT /accession="MIMAT0017560"
FT /product="aly-miR396b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
XX
SQ Sequence 188 BP; 65 A; 30 C; 29 G; 0 T; 64 other;
gaagaagaag aagaagaucc uggucauauu uuuccacagc uuucuugaac uuucuuuuuc 60
auuuccauug uuuuuuuuuu ucuaaaccaa aaaaaaagau cucuaaaauu uagcauuuug 120
gaaacaaaga agaagcucaa gaaagcugug ggaaaacaug acaauucagg guuuuacucc 180
auugauuc 188
//
ID aly-MIR824 standard; RNA; ALY; 654 BP.
XX
AC MI0014603;
XX
DE Arabidopsis lyrata miR824 stem-loop
XX
RN [1]
RX PUBMED; 20407027.
RA Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S,
RA Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC;
RT "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana";
RL Plant Cell. 22:1074-1089(2010).
XX
RN [2]
RX PUBMED; 20407023.
RA Ma Z, Coruh C, Axtell MJ;
RT "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA
RT loci within the Arabidopsis genus";
RL Plant Cell. 22:1090-1103(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0017603"
FT /product="aly-miR824-5p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
FT miRNA 620..640
FT /accession="MIMAT0017604"
FT /product="aly-miR824-3p"
FT /evidence=experimental
FT /experiment="Illumina [1], SOLiD [2]"
XX
SQ Sequence 654 BP; 178 A; 128 C; 122 G; 0 T; 226 other;
aguugucucu caugucuaga ccauuuguga gaagggaguu uuuguuugca ccaauaccca 60
ccaaucucua aguuuguaag aaguauuaug cucaauuaag gaaaauagcu aguucaacuu 120
accacacuac ccuuuuacaa acuauccuau auguuagaug cuagcauggc guaauuuugu 180
guucucauuc ugcagcaggg uuaguuucuu guguaccucu agauauuuau ucucuugcug 240
cguaggguuc ccaagcugcc aaaaacuuuu caaaauuaga gaucuguucc ccacuaaccc 300
ccauccaaua aggaaggucu accuguaugu agcucacagc uauuaaagcu gugcucgcgu 360
cuugguuuua cuguuuuagu uaccccauga aaucugaucc uucagaaguu agguauagaa 420
guaagucgau uaaguucauu caugacuuuu ccagauguug cacagauaac uuuuuuauuu 480
guauuauaac uaguccaagc cgauucucga aaucauauaa aaucauuuac accuugguca 540
ugguagccaa gaauuuguau cuuacacuag guuuccuaau aaauaaaaau ggggaguggg 600
gagguguuug guuauauucc cuucucaucg auggucuaga ugugcgaggu gacu 654
//
ID aae-mir-929-1 standard; RNA; AAE; 88 BP.
XX
AC MI0014710;
XX
DE Aedes aegypti miR-929-1 stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0015648"
FT /product="aae-miR-929"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 88 BP; 21 A; 20 C; 25 G; 0 T; 22 other;
ugccuacgac ugguccaaau ugacucuagu agggaguccu uguguacgag ugacucccua 60
acggagucag auugaacccg guaggaug 88
//
ID aae-mir-929-2 standard; RNA; AAE; 89 BP.
XX
AC MI0014711;
XX
DE Aedes aegypti miR-929-2 stem-loop
XX
RN [1]
RX PUBMED; 19961592.
RA Li S, Mead EA, Liang S, Tu Z;
RT "Direct sequencing and expression analysis of a large number of miRNAs in
RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs";
RL BMC Genomics. 10:581(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0015648"
FT /product="aae-miR-929"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 89 BP; 21 A; 20 C; 26 G; 0 T; 22 other;
ugccuacgac ugguccaaau ugacucuagu agggaguccu uguguacgag ugacucccua 60
acggagucag auugaacccg guaggaugg 89
//
ID ssc-mir-22 standard; RNA; SSC; 80 BP.
XX
AC MI0014770;
XX
DE Sus scrofa miR-22 stem-loop
XX
RN [1]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [2]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [4]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100498778; MIR22.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0015709"
FT /product="ssc-miR-22-5p"
FT /evidence=experimental
FT /experiment="Illumina [1,3-4]"
FT miRNA 49..70
FT /accession="MIMAT0015710"
FT /product="ssc-miR-22-3p"
FT /evidence=experimental
FT /experiment="Illumina [1,3-4], cloned [2]"
XX
SQ Sequence 80 BP; 17 A; 22 C; 20 G; 0 T; 21 other;
gagccgcagu aguucuucag uggcaagcuu uauguccuga cccagcuaaa gcugccaguu 60
gaagaacugu ugcccucugc 80
//
ID vvi-MIR2111 standard; RNA; VVI; 108 BP.
XX
AC MI0015370;
XX
DE Vitis vinifera miR2111 stem-loop
XX
RN [1]
RX PUBMED; 19854858.
RA Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ;
RT "Uncovering small RNA-mediated responses to phosphate deficiency in
RT Arabidopsis by deep sequencing";
RL Plant Physiol. 151:2120-2132(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0016364"
FT /product="vvi-miR2111-5p"
FT /evidence=not_experimental
FT /similarity="MI0010630"
FT miRNA 69..89
FT /accession="MIMAT0016365"
FT /product="vvi-miR2111-3p"
FT /evidence=not_experimental
FT /similarity="MI0010630"
XX
SQ Sequence 108 BP; 23 A; 26 C; 25 G; 0 T; 34 other;
gcaauauugg gucaggaucg gguaaucugc auccugaggu cuagauaagu auaucuccgu 60
ugcagcuagu ccucugguug cagauuacuu cuuccucacu gccaaugc 108
//
ID gga-mir-2188 standard; RNA; GGA; 169 BP.
XX
AC MI0015374;
XX
DE Gallus gallus miR-2188 stem-loop
XX
RN [1]
RX PUBMED; 19891781.
RA Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne
RA PH, Kim JH, Chen R, Wang J, Zhou H;
RT "Identification of differentially expressed miRNAs in chicken lung and
RT trachea with avian influenza virus infection by a deep sequencing
RT approach";
RL BMC Genomics. 10:512(2009).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100498679; MIR2188.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..75
FT /accession="MIMAT0016372"
FT /product="gga-miR-2188-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 92..113
FT /accession="MIMAT0027028"
FT /product="gga-miR-2188-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 169 BP; 44 A; 37 C; 42 G; 0 T; 46 other;
gagguuagau ggcacuuugg gguuuccuuc ugaggaauau cagaccugug ggaaaggucc 60
aaccucacau guccuguaua gaauaaggag ggauauaugu ggucagaccu aucccacagg 120
cccuguauuc uuacacaagu gcagagaccu ugacaugcca ucugaucuu 169
//
ID gga-mir-3530 standard; RNA; GGA; 89 BP.
XX
AC MI0015381;
XX
DE Gallus gallus miR-3530 stem-loop
XX
RN [1]
RX PUBMED; 19891781.
RA Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne
RA PH, Kim JH, Chen R, Wang J, Zhou H;
RT "Identification of differentially expressed miRNAs in chicken lung and
RT trachea with avian influenza virus infection by a deep sequencing
RT approach";
RL BMC Genomics. 10:512(2009).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100498686; MIR3530.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0027029"
FT /product="gga-miR-3530-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 53..73
FT /accession="MIMAT0016379"
FT /product="gga-miR-3530-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
XX
SQ Sequence 89 BP; 15 A; 27 C; 32 G; 0 T; 15 other;
gaaggcugau gcgcccgcuc ugcucgcacc auuguggcgg ccgaacaaag cacaauggug 60
ugagcuggga ugggcgcugg ccggcccuc 89
//
ID gga-mir-3531 standard; RNA; GGA; 87 BP.
XX
AC MI0015383;
XX
DE Gallus gallus miR-3531 stem-loop
XX
RN [1]
RX PUBMED; 19891781.
RA Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne
RA PH, Kim JH, Chen R, Wang J, Zhou H;
RT "Identification of differentially expressed miRNAs in chicken lung and
RT trachea with avian influenza virus infection by a deep sequencing
RT approach";
RL BMC Genomics. 10:512(2009).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100498688; MIR3531.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0016381"
FT /product="gga-miR-3531-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT miRNA 52..74
FT /accession="MIMAT0027030"
FT /product="gga-miR-3531-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 87 BP; 24 A; 18 C; 19 G; 0 T; 26 other;
uugcagauca aagccuccuu guuuggguug uaaugaagug ucgaacuguu uccuugcaac 60
acaaacagga gacacuuuga ucugcaa 87
//
ID gga-mir-3525 standard; RNA; GGA; 84 BP.
XX
AC MI0015384;
XX
DE Gallus gallus miR-3525 stem-loop
XX
RN [1]
RX PUBMED; 19891781.
RA Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne
RA PH, Kim JH, Chen R, Wang J, Zhou H;
RT "Identification of differentially expressed miRNAs in chicken lung and
RT trachea with avian influenza virus infection by a deep sequencing
RT approach";
RL BMC Genomics. 10:512(2009).
XX
DR ENTREZGENE; 100498689; MIR3525.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0016382"
FT /product="gga-miR-3525"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 84 BP; 20 A; 17 C; 21 G; 0 T; 26 other;
gucucuuuca gccucagcca uucugcgauu cugugauaac uuuuagaauc agagaaucau 60
agaauggucc ggguugguag ggac 84
//
ID rno-mir-203b standard; RNA; RNO; 115 BP.
XX
AC MI0015399;
XX
DE Rattus norvegicus miR-203b stem-loop
XX
RN [1]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100526564; Mir3545.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..50
FT /accession="MIMAT0017799"
FT /product="rno-miR-203b-5p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
FT miRNA 69..90
FT /accession="MIMAT0017800"
FT /product="rno-miR-203b-3p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
XX
SQ Sequence 115 BP; 26 A; 35 C; 31 G; 0 T; 23 other;
gcugucgccg cugccgugcg cgccgggucu agugguccua aacauuucac aauugcgcua 60
cagaacuguu gaacuguuaa gaaccacugg accaggcgcg ccugcacaca gaagc 115
//
ID rno-mir-3546 standard; RNA; RNO; 116 BP.
XX
AC MI0015400;
XX
DE Rattus norvegicus miR-3546 stem-loop
XX
RN [1]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100526565; Mir3546.
XX
FH Key Location/Qualifiers
FH
FT miRNA 66..87
FT /accession="MIMAT0017801"
FT /product="rno-miR-3546"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
XX
SQ Sequence 116 BP; 33 A; 30 C; 30 G; 0 T; 23 other;
ggcugagaga cgauagcucc ucugaccaac aagcuuuuug cucgucuuau acgugagagu 60
cagguauaac ccgggccaaa agcucacccg ucaaaggaag uaagcaaggg ucagcc 116
//
ID rno-mir-3085 standard; RNA; RNO; 89 BP.
XX
AC MI0015403;
XX
DE Rattus norvegicus miR-3085 stem-loop
XX
RN [1]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100526566; Mir3085.
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..76
FT /accession="MIMAT0017805"
FT /product="rno-miR-3085"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
XX
SQ Sequence 89 BP; 15 A; 26 C; 27 G; 0 T; 21 other;
gucccuacuc ugggaaggug ccauucugaa ggccaggagu cugaauauga gucacucugg 60
cugcuauggc ccccucccag ggcuugggc 89
//
ID rno-mir-344b-2 standard; RNA; RNO; 71 BP.
XX
AC MI0015408;
XX
DE Rattus norvegicus miR-344b-2 stem-loop
XX
RN [1]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100526568; Mir344b-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0017811"
FT /product="rno-miR-344b-5p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
FT miRNA 47..68
FT /accession="MIMAT0017812"
FT /product="rno-miR-344b-3p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
XX
SQ Sequence 71 BP; 16 A; 17 C; 17 G; 0 T; 21 other;
ugaucaguca ggcugcuggu uauauuccag gacuucucug guccugggua uaaccaaagc 60
ccgacuguua a 71
//
ID rno-mir-3558 standard; RNA; RNO; 114 BP.
XX
AC MI0015420;
XX
DE Rattus norvegicus miR-3558 stem-loop
XX
RN [1]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100526575; Mir3558.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..49
FT /accession="MIMAT0017825"
FT /product="rno-miR-3558-5p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
FT miRNA 68..87
FT /accession="MIMAT0017826"
FT /product="rno-miR-3558-3p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
XX
SQ Sequence 114 BP; 23 A; 31 C; 34 G; 0 T; 26 other;
gcagcuggac cuucacccgg gcuguccaua gaagucaucc cacagugccu ucaaggaggg 60
caucggcacu guggaggguu ucuaugucag ccugaguggu acagauccau gcug 114
//
ID rno-mir-3559 standard; RNA; RNO; 115 BP.
XX
AC MI0015421;
XX
DE Rattus norvegicus miR-3559 stem-loop
XX
RN [1]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100526576; Mir3559.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..50
FT /accession="MIMAT0017827"
FT /product="rno-miR-3559-5p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
FT miRNA 69..90
FT /accession="MIMAT0017828"
FT /product="rno-miR-3559-3p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
XX
SQ Sequence 115 BP; 39 A; 21 C; 23 G; 0 T; 32 other;
cucagaagaa agccuuuuuc ucucugcgug acagacuuag uacuacauga uccauguuaa 60
ugaaacuaau guaguacuga gucugucgug cagugaguaa aaaaauccaa agaga 115
//
ID rno-mir-3065 standard; RNA; RNO; 103 BP.
XX
AC MI0015429;
XX
DE Rattus norvegicus miR-3065 stem-loop
XX
RN [1]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100526580; Mir3065.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..40
FT /accession="MIMAT0017839"
FT /product="rno-miR-3065-5p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
FT miRNA 60..83
FT /accession="MIMAT0017840"
FT /product="rno-miR-3065-3p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
XX
SQ Sequence 103 BP; 22 A; 29 C; 32 G; 0 T; 20 other;
gaggcuggca gcugcccucu ucaacaaaau cacugaugcu ggagucacug ugcacccacu 60
cagcaccagg auauuguugg ggaggacggc cugggcagcg ucg 103
//
ID rno-mir-208b standard; RNA; RNO; 112 BP.
XX
AC MI0015434;
XX
DE Rattus norvegicus miR-208b stem-loop
XX
RN [1]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100526635; Mir208b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..46
FT /accession="MIMAT0017844"
FT /product="rno-miR-208b-5p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
FT miRNA 62..79
FT /accession="MIMAT0017845"
FT /product="rno-miR-208b-3p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
XX
SQ Sequence 112 BP; 24 A; 32 C; 26 G; 0 T; 30 other;
acccccaccu ccugcuccuc ucagggaagc uuuuugcucg cguuauguuu cucauccgaa 60
uauaagacga acaaaagguu ugucugaggg cugagugcac ccaccugggg ua 112
//
ID rno-mir-3572 standard; RNA; RNO; 108 BP.
XX
AC MI0015442;
XX
DE Rattus norvegicus miR-3572 stem-loop
XX
RN [1]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100526587; Mir3572.
XX
FH Key Location/Qualifiers
FH
FT miRNA 65..88
FT /accession="MIMAT0017853"
FT /product="rno-miR-3572"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
XX
SQ Sequence 108 BP; 20 A; 25 C; 35 G; 0 T; 28 other;
ugccaccagu aaguggaggc caguuugggg gacagggcaa ggugggcagu agcugacagc 60
cuguuuacac uugcccuuuu uuccccaggc uauaguucgg uuguggca 108
//
ID rno-mir-1188 standard; RNA; RNO; 82 BP.
XX
AC MI0015443;
XX
DE Rattus norvegicus miR-1188 stem-loop
XX
RN [1]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100526588; Mir1188.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0017854"
FT /product="rno-miR-1188-5p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
FT miRNA 49..65
FT /accession="MIMAT0017855"
FT /product="rno-miR-1188-3p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
XX
SQ Sequence 82 BP; 16 A; 27 C; 23 G; 0 T; 16 other;
gucucucagc uggugugagg uugggccagg augaaaccca aggcucuccg aggcucccca 60
ccacacccug cugcugaaga cu 82
//
ID rno-mir-1193 standard; RNA; RNO; 120 BP.
XX
AC MI0015445;
XX
DE Rattus norvegicus miR-1193 stem-loop
XX
RN [1]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100526637; Mir1193.
XX
FH Key Location/Qualifiers
FH
FT miRNA 32..51
FT /accession="MIMAT0017858"
FT /product="rno-miR-1193-5p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
FT miRNA 67..88
FT /accession="MIMAT0017859"
FT /product="rno-miR-1193-3p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
XX
SQ Sequence 120 BP; 23 A; 31 C; 33 G; 0 T; 33 other;
ggugcuuacu gcucucaggg uagcugugag gaugguaaac cggugacgug cacuucauuu 60
augcuguagg ucacccguuu uacuauccgc cagcacccag accgucugug ggaugauacc 120
//
ID rno-mir-3580 standard; RNA; RNO; 81 BP.
XX
AC MI0015453;
XX
DE Rattus norvegicus miR-3580 stem-loop
XX
RN [1]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100526639; Mir3580.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0017868"
FT /product="rno-miR-3580-5p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
FT miRNA 48..69
FT /accession="MIMAT0017869"
FT /product="rno-miR-3580-3p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
XX
SQ Sequence 81 BP; 18 A; 13 C; 23 G; 0 T; 27 other;
gugugcuaug cccugcuugu acuuauucug gugacaugag guaucuguga cuaggguagu 60
augaguagag uaaaguucac c 81
//
ID rno-mir-3585 standard; RNA; RNO; 118 BP.
XX
AC MI0015460;
XX
DE Rattus norvegicus miR-3585 stem-loop
XX
RN [1]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100526600; Mir3585.
XX
FH Key Location/Qualifiers
FH
FT miRNA 32..53
FT /accession="MIMAT0017878"
FT /product="rno-miR-3585-5p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
FT miRNA 67..85
FT /accession="MIMAT0017879"
FT /product="rno-miR-3585-3p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
XX
SQ Sequence 118 BP; 31 A; 20 C; 33 G; 0 T; 34 other;
gccacaugga gcaaaucugu gugcagugcu uuucacaaga aggugucuuu cauggggauu 60
aaaacaugaa cggcccuugu ugugaggagu aauguacaac auguaaugcc uguguggu 118
//
ID rno-mir-219b standard; RNA; RNO; 100 BP.
XX
AC MI0015462;
XX
DE Rattus norvegicus miR-219b stem-loop
XX
RN [1]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0017882"
FT /product="rno-miR-219b"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
XX
SQ Sequence 100 BP; 26 A; 27 C; 26 G; 0 T; 21 other;
agaccggagc ucaaccacag auguccagcc acaauucucg guuggccgca gacucguaca 60
agaauugcgu uuggacaauc aguggugaag ccccugaguu 100
//
ID rno-mir-702 standard; RNA; RNO; 107 BP.
XX
AC MI0015464;
XX
DE Rattus norvegicus miR-702 stem-loop
XX
RN [1]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100526603; Mir702.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..21
FT /accession="MIMAT0017884"
FT /product="rno-miR-702-5p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
FT miRNA 81..103
FT /accession="MIMAT0017885"
FT /product="rno-miR-702-3p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
XX
SQ Sequence 107 BP; 14 A; 36 C; 32 G; 0 T; 25 other;
gugagugggg ugguuggcau ggguugccca gucuggggac ucgacgcugu gucacagccu 60
ccugaugucc uccucacgca ugcccacccu uuaccccacu ccagggc 107
//
ID rno-mir-344b-1 standard; RNA; RNO; 98 BP.
XX
AC MI0015472;
XX
DE Rattus norvegicus miR-344b-1 stem-loop
XX
RN [1]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100526625; Mir344b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0017811"
FT /product="rno-miR-344b-5p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
FT miRNA 54..75
FT /accession="MIMAT0017894"
FT /product="rno-miR-344b-1-3p"
FT /evidence=experimental
FT /experiment="SOLiD [1]"
XX
SQ Sequence 98 BP; 29 A; 20 C; 22 G; 0 T; 27 other;
agagaccuga ucagucaggc ugcugguuau auuccaggac uucucugguc cuggauauaa 60
ccaaagcccg acuguuaaau aaaaguaaga augugucu 98
//
ID cin-mir-92e standard; RNA; CIN; 52 BP.
XX
AC MI0015495;
XX
DE Ciona intestinalis miR-92e stem-loop
XX
RN [1]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100498868; mir92e.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..20
FT /accession="MIMAT0016421"
FT /product="cin-miR-92e-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 33..52
FT /accession="MIMAT0016422"
FT /product="cin-miR-92e-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 52 BP; 9 A; 9 C; 17 G; 0 T; 17 other;
cggugugggu gggugcauga aucguuguga auuauugcac uucccuagac ug 52
//
ID cin-mir-4000e standard; RNA; CIN; 84 BP.
XX
AC MI0015502;
XX
DE Ciona intestinalis miR-4000e stem-loop
XX
RN [1]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100499052; mir4000e.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..20
FT /accession="MIMAT0016434"
FT /product="cin-miR-4000e-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 65..84
FT /accession="MIMAT0016435"
FT /product="cin-miR-4000e-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 84 BP; 18 A; 20 C; 19 G; 0 T; 27 other;
ugaaacuucu ucggaacagg ccgguuuaaa aucuuauccu auaugggcaa gguuucgauu 60
ucccggccuc ucucggaggu uuca 84
//
ID cin-mir-4000a-2 standard; RNA; CIN; 55 BP.
XX
AC MI0015504;
XX
DE Ciona intestinalis miR-4000a-2 stem-loop
XX
RN [1]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100498873; mir4000a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..20
FT /accession="MIMAT0016430"
FT /product="cin-miR-4000a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 34..55
FT /accession="MIMAT0026471"
FT /product="cin-miR-4000a-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 55 BP; 13 A; 12 C; 12 G; 0 T; 18 other;
cgaaacuugc guggaacagg cuguuugaau ccagccuuuu cguguaaauu uccau 55
//
ID cin-mir-4000f standard; RNA; CIN; 51 BP.
XX
AC MI0015505;
XX
DE Ciona intestinalis miR-4000f stem-loop
XX
RN [1]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100498874; mir4000f.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..20
FT /accession="MIMAT0016436"
FT /product="cin-miR-4000f-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 32..51
FT /accession="MIMAT0016437"
FT /product="cin-miR-4000f-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 51 BP; 12 A; 12 C; 15 G; 0 T; 12 other;
ugaaacuucg cuggaacagg ccgggugacc cgagcuguuc acgaaguuuu a 51
//
ID cin-mir-4001c standard; RNA; CIN; 59 BP.
XX
AC MI0015514;
XX
DE Ciona intestinalis miR-4001c stem-loop
XX
RN [1]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100499094; mir4001c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..20
FT /accession="MIMAT0016450"
FT /product="cin-miR-4001c-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 40..59
FT /accession="MIMAT0016451"
FT /product="cin-miR-4001c-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 59 BP; 15 A; 14 C; 15 G; 0 T; 15 other;
cggaacuuuc caaggaacag gcuuaaugca uauagucggc cuguugcugg gaauuccca 59
//
ID cin-mir-4001f standard; RNA; CIN; 99 BP.
XX
AC MI0015517;
XX
DE Ciona intestinalis miR-4001f stem-loop
XX
RN [1]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100498880; mir4001f.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..20
FT /accession="MIMAT0016456"
FT /product="cin-miR-4001f-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 80..99
FT /accession="MIMAT0016457"
FT /product="cin-miR-4001f-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 99 BP; 27 A; 18 C; 22 G; 0 T; 32 other;
uggaacuuac uaaugaacag gcuuguguac agcuuagcac uauuuucgaa uguuggugcu 60
agcucguuga uauaaacagc cuguuguaag uaagcucca 99
//
ID cin-mir-4006d standard; RNA; CIN; 54 BP.
XX
AC MI0015533;
XX
DE Ciona intestinalis miR-4006d stem-loop
XX
RN [1]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100498888; mir4006d.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..20
FT /accession="MIMAT0016476"
FT /product="cin-miR-4006d-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 35..54
FT /accession="MIMAT0016477"
FT /product="cin-miR-4006d-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 54 BP; 14 A; 10 C; 15 G; 0 T; 15 other;
uggaacauac agguaagggc ugcugucauc gcagucuuua acuggguguu caaa 54
//
ID cin-mir-1502a standard; RNA; CIN; 59 BP.
XX
AC MI0015541;
XX
DE Ciona intestinalis miR-1502a stem-loop
XX
RN [1]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100498892; mir1502a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..20
FT /accession="MIMAT0016487"
FT /product="cin-miR-1502a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 40..59
FT /accession="MIMAT0016488"
FT /product="cin-miR-1502a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 59 BP; 24 A; 11 C; 7 G; 0 T; 17 other;
uugaacuuuc uaaggaauag guuuaaacca aaacuacaac cuaauucuug aaagucaac 59
//
ID cin-mir-1502c standard; RNA; CIN; 57 BP.
XX
AC MI0015543;
XX
DE Ciona intestinalis miR-1502c stem-loop
XX
RN [1]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100498893; mir1502c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..20
FT /accession="MIMAT0016491"
FT /product="cin-miR-1502c-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 38..57
FT /accession="MIMAT0016492"
FT /product="cin-miR-1502c-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 57 BP; 17 A; 8 C; 13 G; 0 T; 19 other;
ugaacuuuac caugaaaaag ccuguuaauu gaaaugcagg guuuuucaug gaguucg 57
//
ID cin-mir-4009a standard; RNA; CIN; 53 BP.
XX
AC MI0015548;
XX
DE Ciona intestinalis miR-4009a stem-loop
XX
RN [1]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100499087; mir4009a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..20
FT /accession="MIMAT0016501"
FT /product="cin-miR-4009a-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 34..53
FT /accession="MIMAT0016502"
FT /product="cin-miR-4009a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 53 BP; 13 A; 9 C; 11 G; 0 T; 20 other;
gguuuuccau guguaagagc uauuaugcua ugcuauugca cauguuguac caa 53
//
ID cin-mir-4009b standard; RNA; CIN; 52 BP.
XX
AC MI0015549;
XX
DE Ciona intestinalis miR-4009b stem-loop
XX
RN [1]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100498896; mir4009b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..20
FT /accession="MIMAT0016503"
FT /product="cin-miR-4009b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 32..52
FT /accession="MIMAT0016504"
FT /product="cin-miR-4009b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 52 BP; 15 A; 10 C; 11 G; 0 T; 16 other;
gguauguuua guguucaaga gcaagcauag cuauugcaca cuaauguacc cu 52
//
ID cin-mir-4011b standard; RNA; CIN; 56 BP.
XX
AC MI0015554;
XX
DE Ciona intestinalis miR-4011b stem-loop
XX
RN [1]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100499026; mir4011b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..20
FT /accession="MIMAT0016510"
FT /product="cin-miR-4011b-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 37..56
FT /accession="MIMAT0016511"
FT /product="cin-miR-4011b-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 56 BP; 15 A; 11 C; 14 G; 0 T; 16 other;
ucacagugga gguauaccuu guugugugac guaacaacgg uagcauucac uguaac 56
//
ID cin-mir-4029 standard; RNA; CIN; 54 BP.
XX
AC MI0015580;
XX
DE Ciona intestinalis miR-4029 stem-loop
XX
RN [1]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100498912; mir4029.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..20
FT /accession="MIMAT0016547"
FT /product="cin-miR-4029-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 35..54
FT /accession="MIMAT0016548"
FT /product="cin-miR-4029-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 54 BP; 17 A; 10 C; 10 G; 0 T; 17 other;
aaagugcaac uguguaaacc ugauuauacu gcagguuuac auugcaugca cuua 54
//
ID cin-mir-4031 standard; RNA; CIN; 54 BP.
XX
AC MI0015582;
XX
DE Ciona intestinalis miR-4031 stem-loop
XX
RN [1]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100498913; mir4031.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..20
FT /accession="MIMAT0016551"
FT /product="cin-miR-4031-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 35..54
FT /accession="MIMAT0016552"
FT /product="cin-miR-4031-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 54 BP; 14 A; 15 C; 12 G; 0 T; 13 other;
cccaaagugu cggcgcauau ucuuaaauaa ccgaacaugu accgucgcuc uggg 54
//
ID cin-mir-4033 standard; RNA; CIN; 55 BP.
XX
AC MI0015584;
XX
DE Ciona intestinalis miR-4033 stem-loop
XX
RN [1]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100499148; mir4033.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..20
FT /accession="MIMAT0016555"
FT /product="cin-miR-4033-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 36..55
FT /accession="MIMAT0016556"
FT /product="cin-miR-4033-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 55 BP; 13 A; 9 C; 13 G; 0 T; 20 other;
ggagcacaau auguaguuua uguggcuuau uuucauaagu gcauugcgug cucca 55
//
ID cin-mir-4041 standard; RNA; CIN; 53 BP.
XX
AC MI0015592;
XX
DE Ciona intestinalis miR-4041 stem-loop
XX
RN [1]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100499108; mir4041.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..20
FT /accession="MIMAT0016571"
FT /product="cin-miR-4041-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 34..53
FT /accession="MIMAT0016572"
FT /product="cin-miR-4041-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 53 BP; 12 A; 12 C; 10 G; 0 T; 19 other;
cagugauuca aguccuaucu gcugcuucau cggcaauagg ucuuuaauca uug 53
//
ID cin-mir-4044 standard; RNA; CIN; 57 BP.
XX
AC MI0015595;
XX
DE Ciona intestinalis miR-4044 stem-loop
XX
RN [1]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100498921; mir4044.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..20
FT /accession="MIMAT0016577"
FT /product="cin-miR-4044-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 38..57
FT /accession="MIMAT0016578"
FT /product="cin-miR-4044-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 57 BP; 13 A; 11 C; 11 G; 0 T; 22 other;
aguugguaga cugauuucag uucccuuuuc uuucgacuga aauaggucug cuaacua 57
//
ID cin-mir-4046 standard; RNA; CIN; 58 BP.
XX
AC MI0015597;
XX
DE Ciona intestinalis miR-4046 stem-loop
XX
RN [1]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100499109; mir4046.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..20
FT /accession="MIMAT0016581"
FT /product="cin-miR-4046-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 37..58
FT /accession="MIMAT0016582"
FT /product="cin-miR-4046-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 58 BP; 14 A; 11 C; 14 G; 0 T; 19 other;
caggguguug cguguuacuu guguauuaug acaucaucag uaacacgaau acguccug 58
//
ID cin-mir-4050 standard; RNA; CIN; 56 BP.
XX
AC MI0015601;
XX
DE Ciona intestinalis miR-4050 stem-loop
XX
RN [1]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100498924; mir4050.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..23
FT /accession="MIMAT0016589"
FT /product="cin-miR-4050-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 37..56
FT /accession="MIMAT0016590"
FT /product="cin-miR-4050-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 56 BP; 17 A; 9 C; 12 G; 0 T; 18 other;
uagguaaauc aaauuucagg cuguuaguga gaccaacagc uugaauuugu ugccua 56
//
ID cin-mir-4051 standard; RNA; CIN; 52 BP.
XX
AC MI0015602;
XX
DE Ciona intestinalis miR-4051 stem-loop
XX
RN [1]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100499032; mir4051.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..20
FT /accession="MIMAT0016591"
FT /product="cin-miR-4051-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 33..52
FT /accession="MIMAT0016592"
FT /product="cin-miR-4051-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 52 BP; 16 A; 12 C; 12 G; 0 T; 12 other;
uucaaccauc acggcacuau uggguuaaac acccaagguc gaggugauug aa 52
//
ID cin-mir-4060 standard; RNA; CIN; 55 BP.
XX
AC MI0015611;
XX
DE Ciona intestinalis miR-4060 stem-loop
XX
RN [1]
RX PUBMED; 20370911.
RA Hendrix D, Levine M, Shi W;
RT "miRTRAP, a computational method for the systematic identification of
RT miRNAs from high throughput sequencing data";
RL Genome Biol. 11:R39(2010).
XX
DR ENTREZGENE; 100498929; mir4060.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..20
FT /accession="MIMAT0016608"
FT /product="cin-miR-4060-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 36..55
FT /accession="MIMAT0016609"
FT /product="cin-miR-4060-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 55 BP; 13 A; 11 C; 11 G; 0 T; 20 other;
auuucacucu uucaacuguu ggucgaaaua uauccagccg uuguugcagu gaagu 55
//
ID nve-mir-2024e-2 standard; RNA; NVE; 94 BP.
XX
AC MI0015985;
XX
DE Nematostella vectensis miR-2024e-2 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0009766"
FT /product="nve-miR-2024e-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 52..73
FT /accession="MIMAT0009767"
FT /product="nve-miR-2024e-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 94 BP; 26 A; 20 C; 22 G; 0 T; 26 other;
acaucaggua gacuugcuuc agaguauugg cgcugggcaa aaggucacau uuugcacauu 60
accaauauuc ugaggcacuu cugcugaagg aacu 94
//
ID nve-mir-2024e-3 standard; RNA; NVE; 94 BP.
XX
AC MI0015986;
XX
DE Nematostella vectensis miR-2024e-3 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0009766"
FT /product="nve-miR-2024e-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 52..73
FT /accession="MIMAT0009767"
FT /product="nve-miR-2024e-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 94 BP; 26 A; 20 C; 22 G; 0 T; 26 other;
acaucaggua gacuugcuuc agaguauugg cgcugggcaa aaggucacau uuugcacauu 60
accaauauuc ugaggcacuu cugcugaagg aacu 94
//
ID nve-mir-2032b-2 standard; RNA; NVE; 81 BP.
XX
AC MI0015987;
XX
DE Nematostella vectensis miR-2032b-2 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..38
FT /accession="MIMAT0009786"
FT /product="nve-miR-2032b-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 50..69
FT /accession="MIMAT0009787"
FT /product="nve-miR-2032b-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 81 BP; 17 A; 19 C; 23 G; 0 T; 22 other;
gcgagcucac cguugcuguc gcugcaacag uuagcuagca uuuauugcga gguaacuguu 60
gcagcaucca ugacugugag g 81
//
ID nve-mir-2040a-2 standard; RNA; NVE; 92 BP.
XX
AC MI0015988;
XX
DE Nematostella vectensis miR-2040a-2 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..43
FT /accession="MIMAT0009802"
FT /product="nve-miR-2040a-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT miRNA 51..73
FT /accession="MIMAT0009803"
FT /product="nve-miR-2040a-3p"
FT /evidence=experimental
FT /experiment="454 [1]"
XX
SQ Sequence 92 BP; 16 A; 27 C; 23 G; 0 T; 26 other;
gaucgugaug ccuacaaccu ucgggucagc uacgacauga gcgcuccucg uuugucucgu 60
aacugcccug aagguagucc uggcgucuuu ac 92
//
ID nve-mir-2035-2 standard; RNA; NVE; 78 BP.
XX
AC MI0015989;
XX
DE Nematostella vectensis miR-2035-2 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..30
FT /accession="MIMAT0009792"
FT /product="nve-miR-2035-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 54..73
FT /accession="MIMAT0009793"
FT /product="nve-miR-2035-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 78 BP; 17 A; 14 C; 24 G; 0 T; 23 other;
guggcguauu acauggucug uuacaaggga ugaagugcuc gaguuucgag uucccuugug 60
acagcccaug ggagaauu 78
//
ID nve-mir-2024a-2 standard; RNA; NVE; 63 BP.
XX
AC MI0015990;
XX
DE Nematostella vectensis miR-2024a-2 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0009757"
FT /product="nve-miR-2024a-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 38..59
FT /accession="MIMAT0009758"
FT /product="nve-miR-2024a-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 63 BP; 20 A; 10 C; 14 G; 0 T; 19 other;
ugcuucaaaa uaucgguguu ggguaaaagg ucacauuuua cacaguaccg auauugugaa 60
gca 63
//
ID nve-mir-2024a-3 standard; RNA; NVE; 63 BP.
XX
AC MI0015991;
XX
DE Nematostella vectensis miR-2024a-3 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0009757"
FT /product="nve-miR-2024a-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 38..59
FT /accession="MIMAT0009758"
FT /product="nve-miR-2024a-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 63 BP; 20 A; 10 C; 14 G; 0 T; 19 other;
ugcuucaaaa uaucgguguu ggguaaaagg ucacauuuua cacaguaccg auauugugaa 60
gca 63
//
ID nve-mir-2024g-2 standard; RNA; NVE; 89 BP.
XX
AC MI0015992;
XX
DE Nematostella vectensis miR-2024g-2 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..42
FT /accession="MIMAT0009774"
FT /product="nve-miR-2024g-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 54..75
FT /accession="MIMAT0009775"
FT /product="nve-miR-2024g-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 89 BP; 29 A; 17 C; 18 G; 0 T; 25 other;
accaauaagu gcuacugcuu caaaauaucg guguugggua aaaggucacc uuuuaacaca 60
guaccgauau ugugaagcac guuugcaaa 89
//
ID nve-mir-2024g-3 standard; RNA; NVE; 89 BP.
XX
AC MI0015993;
XX
DE Nematostella vectensis miR-2024g-3 stem-loop
XX
RN [1]
RX PUBMED; 18830242.
RA Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan
RA BM, Rokhsar DS, Bartel DP;
RT "Early origins and evolution of microRNAs and Piwi-interacting RNAs in
RT animals";
RL Nature. 455:1193-1197(2008).
XX
RN [2]
RX PUBMED; 24642861.
RA Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD,
RA Technau U, Seitz H;
RT "Cnidarian microRNAs frequently regulate targets by cleavage";
RL Genome Res. 24:651-663(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..42
FT /accession="MIMAT0009774"
FT /product="nve-miR-2024g-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
FT miRNA 54..75
FT /accession="MIMAT0009775"
FT /product="nve-miR-2024g-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [2]"
XX
SQ Sequence 89 BP; 29 A; 17 C; 18 G; 0 T; 25 other;
accaauaagu gcuacugcuu caaaauaucg guguugggua aaaggucacc uuuuaacaca 60
guaccgauau ugugaagcac guuugcaaa 89
//
ID hsa-mir-3605 standard; RNA; HSA; 100 BP.
XX
AC MI0015995;
XX
DE Homo sapiens miR-3605 stem-loop
XX
RN [1]
RX PUBMED; 20459774.
RA Witten D, Tibshirani R, Gu SG, Fire A, Lui WO;
RT "Ultra-high throughput sequencing-based small RNA discovery and discrete
RT statistical biomarker analysis in a collection of cervical tumours and
RT matched controls";
RL BMC Biol. 8:58(2010).
XX
RN [2]
RX PUBMED; 20224791.
RA Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain
RA MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM,
RA Gunaratne PH;
RT "Discovery of novel microRNAs in female reproductive tract using next
RT generation sequencing";
RL PLoS One. 5:e9637(2010).
XX
DR ENTREZGENE; 100500853; MIR3605.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0017981"
FT /product="hsa-miR-3605-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 66..88
FT /accession="MIMAT0017982"
FT /product="hsa-miR-3605-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 100 BP; 20 A; 28 C; 27 G; 0 T; 25 other;
acuuuauacg uguaauugug augaggaugg auagcaagga agccgcuccc accugacccu 60
cacggccucc guguuaccug uccucuaggu gggacgcucg 100
//
ID hsa-mir-3613 standard; RNA; HSA; 87 BP.
XX
AC MI0016003;
XX
DE Homo sapiens miR-3613 stem-loop
XX
RN [1]
RX PUBMED; 20459774.
RA Witten D, Tibshirani R, Gu SG, Fire A, Lui WO;
RT "Ultra-high throughput sequencing-based small RNA discovery and discrete
RT statistical biomarker analysis in a collection of cervical tumours and
RT matched controls";
RL BMC Biol. 8:58(2010).
XX
DR ENTREZGENE; 100500908; MIR3613.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0017990"
FT /product="hsa-miR-3613-5p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT miRNA 53..76
FT /accession="MIMAT0017991"
FT /product="hsa-miR-3613-3p"
FT /evidence=experimental
FT /experiment="Illumina [1]"
XX
SQ Sequence 87 BP; 22 A; 16 C; 15 G; 0 T; 34 other;
ugguuggguu uggauuguug uacuuuuuuu uuuguucguu gcauuuuuag gaacaaaaaa 60
aaaagcccaa cccuucacac cacuuca 87
//
ID hsa-mir-3614 standard; RNA; HSA; 86 BP.
XX
AC MI0016004;
XX
DE Homo sapiens miR-3614 stem-loop
XX
RN [1]
RX PUBMED; 20459774.
RA Witten D, Tibshirani R, Gu SG, Fire A, Lui WO;
RT "Ultra-high throughput sequencing-based small RNA discovery and discrete
RT statistical biomarker analysis in a collection of cervical tumours and
RT matched controls";
RL BMC Biol. 8:58(2010).
XX
RN [2]
RX PUBMED; 21199797.
RA Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman
RA N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C;
RT "Identification of new microRNAs in paired normal and tumor breast tissue
RT suggests a dual role for the ERBB2/Her2 gene";
RL Cancer Res. 71:78-86(2011).
XX
RN [3]
RX PUBMED; 21807764.
RA Joyce CE, Zhou X, Xia J, Ryan C, Thrash B, Menter A, Zhang W, Bowcock AM;
RT "Deep sequencing of small RNAs from human skin reveals major alterations
RT in the psoriasis miRNAome";
RL Hum Mol Genet. 20:4025-4040(2011).
XX
DR ENTREZGENE; 100500827; MIR3614.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0017992"
FT /product="hsa-miR-3614-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-3]"
FT miRNA 53..75
FT /accession="MIMAT0017993"
FT /product="hsa-miR-3614-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-3]"
XX
SQ Sequence 86 BP; 10 A; 20 C; 23 G; 0 T; 33 other;
gguucugucu ugggccacuu ggaucugaag gcugccccuu ugcucucugg gguagccuuc 60
agaucuuggu guuuugaauu cuuacu 86
//
ID hsa-mir-3616 standard; RNA; HSA; 92 BP.
XX
AC MI0016006;
XX
DE Homo sapiens miR-3616 stem-loop
XX
RN [1]
RX PUBMED; 20459774.
RA Witten D, Tibshirani R, Gu SG, Fire A, Lui WO;
RT "Ultra-high throughput sequencing-based small RNA discovery and discrete
RT statistical biomarker analysis in a collection of cervical tumours and
RT matched controls";
RL BMC Biol. 8:58(2010).
XX
DR ENTREZGENE; 100500814; MIR3616.
XX
F