ID cel-let-7 standard; RNA; CEL; 99 BP.
XX
AC MI0000001;
XX
DE Caenorhabditis elegans let-7 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR RFAM; RF00027; let-7.
DR WORMBASE; C05G5/12462-12364; .
XX
CC let-7 is found on chromosome X in Caenorhabditis elegans [1] and pairs to
CC sites within the 3' untranslated region (UTR) of target mRNAs, specifying
CC the translational repression of these mRNAs and triggering the transition
CC to late-larval and adult stages [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000001"
FT /product="cel-let-7-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], PCR [4], 454 [5],
FT Illumina [6], CLIPseq [7]"
FT miRNA 60..81
FT /accession="MIMAT0015091"
FT /product="cel-let-7-3p"
FT /evidence=experimental
FT /experiment="CLIPseq [7]"
XX
SQ Sequence 99 BP; 26 A; 19 C; 24 G; 0 T; 30 other;
uacacugugg auccggugag guaguagguu guauaguuug gaauauuacc accggugaac 60
uaugcaauuu ucuaccuuac cggagacaga acucuucga 99
//
ID cel-lin-4 standard; RNA; CEL; 94 BP.
XX
AC MI0000002;
XX
DE Caenorhabditis elegans lin-4 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 10642801.
RA Olsen PH, Ambros V;
RT "The lin-4 regulatory RNA controls developmental timing in Caenorhabditis
RT elegans by blocking LIN-14 protein synthesis after the initiation of
RT translation";
RL Dev Biol. 216:671-680(1999).
XX
RN [3]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [4]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR RFAM; RF00052; lin-4.
DR WORMBASE; F59G1/6156-6249; .
XX
CC lin-4 is found on chromosome II in Caenorhabditis elegans [1] and is
CC complementary to sequences in the 3' untranslated region (UTR) of lin-14
CC mRNA. lin-4 acts to developmentally repress the accumulation of lin-14
CC protein. This repression is essential for the proper timing of numerous
CC events of Caenorhabditis elegans larval development [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0000002"
FT /product="cel-lin-4-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], 454 [5], Illumina [6],
FT CLIPseq [7]"
FT miRNA 55..76
FT /accession="MIMAT0015092"
FT /product="cel-lin-4-3p"
FT /evidence=experimental
FT /experiment="CLIPseq [7]"
XX
SQ Sequence 94 BP; 17 A; 25 C; 26 G; 0 T; 26 other;
augcuuccgg ccuguucccu gagaccucaa gugugagugu acuauugaug cuucacaccu 60
gggcucuccg gguaccagga cgguuugagc agau 94
//
ID cel-mir-1 standard; RNA; CEL; 96 BP.
XX
AC MI0000003;
XX
DE Caenorhabditis elegans miR-1 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
RN [3]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [4]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [5]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [6]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
RN [7]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [8]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [9]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [10]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR RFAM; RF00103; mir-1.
DR WORMBASE; T09B4/23107-23012; .
XX
CC miR-1 was independently identified in C. elegans [1,2] and Drosophila
CC melanogaster (MIR:MI0000116) [3]. The sequence is also conserved in C.
CC briggsae (MIR:MI0000493).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0020301"
FT /product="cel-miR-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [10]"
FT miRNA 61..81
FT /accession="MIMAT0000003"
FT /product="cel-miR-1-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4-5], Northern [1], Illumina
FT [10,8], PCR [6], 454 [7], CLIPseq [9]"
XX
SQ Sequence 96 BP; 32 A; 16 C; 23 G; 0 T; 25 other;
aaagugaccg uaccgagcug cauacuuccu uacaugccca uacuauauca uaaauggaua 60
uggaauguaa agaaguaugu agaacggggu gguagu 96
//
ID cel-mir-2 standard; RNA; CEL; 98 BP.
XX
AC MI0000004;
XX
DE Caenorhabditis elegans miR-2 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
RN [3]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [4]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [5]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
RN [6]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [7]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [8]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [9]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR RFAM; RF00047; mir-2.
DR WORMBASE; M04C9/29652-29555; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0020302"
FT /product="cel-miR-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [9]"
FT miRNA 61..83
FT /accession="MIMAT0000004"
FT /product="cel-miR-2-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], PCR [5], 454 [6], Illumina
FT [7,9], CLIPseq [8]"
XX
SQ Sequence 98 BP; 27 A; 19 C; 22 G; 0 T; 30 other;
uaaacaguau acagaaagcc aucaaagcgg ugguugaugu guugcaaauu augacuuuca 60
uaucacagcc agcuuugaug ugcugccugu ugcacugu 98
//
ID cel-mir-34 standard; RNA; CEL; 97 BP.
XX
AC MI0000005;
XX
DE Caenorhabditis elegans miR-34 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; Y41G9A/23565-23469; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000005"
FT /product="cel-miR-34-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], PCR [4], 454 [5],
FT Illumina [6], CLIPseq [7]"
FT miRNA 53..74
FT /accession="MIMAT0015093"
FT /product="cel-miR-34-3p"
FT /evidence=experimental
FT /experiment="CLIPseq [7]"
XX
SQ Sequence 97 BP; 21 A; 27 C; 23 G; 0 T; 26 other;
cggacaaugc ucgagaggca gugugguuag cugguugcau auuuccuuga caacggcuac 60
cuucacugcc accccgaaca ugucguccau cuuugaa 97
//
ID cel-mir-35 standard; RNA; CEL; 97 BP.
XX
AC MI0000006;
XX
DE Caenorhabditis elegans miR-35 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; Y62F5A/16840-16936; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0020303"
FT /product="cel-miR-35-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 61..82
FT /accession="MIMAT0000006"
FT /product="cel-miR-35-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], 454 [4], Illumina
FT [5,7], CLIPseq [6]"
XX
SQ Sequence 97 BP; 20 A; 25 C; 22 G; 0 T; 30 other;
ucucggauca gaucgagcca uugcugguuu cuuccacagu gguacuuucc auuagaacua 60
ucaccgggug gaaacuagca guggcucgau cuuuucc 97
//
ID cel-mir-36 standard; RNA; CEL; 97 BP.
XX
AC MI0000007;
XX
DE Caenorhabditis elegans miR-36 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; Y62F5A/16945-17041; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0020304"
FT /product="cel-miR-36-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 61..82
FT /accession="MIMAT0000007"
FT /product="cel-miR-36-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], 454 [3], Illumina
FT [4,6], CLIPseq [5]"
XX
SQ Sequence 97 BP; 21 A; 30 C; 26 G; 0 T; 20 other;
caccgcuguc ggggaaccgc gccaauuuuc gcuucagugc uagaccaucc aaagugucua 60
ucaccgggug aaaauucgca uggguccccg acgcgga 97
//
ID cel-mir-37 standard; RNA; CEL; 98 BP.
XX
AC MI0000008;
XX
DE Caenorhabditis elegans miR-37 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; Y62F5A/17065-17162; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0015094"
FT /product="cel-miR-37-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [6]"
FT miRNA 61..82
FT /accession="MIMAT0000008"
FT /product="cel-miR-37-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], 454 [4], Illumina
FT [5], CLIPseq [6]"
XX
SQ Sequence 98 BP; 16 A; 24 C; 26 G; 0 T; 32 other;
uucuagaaac ccuuggacca gugugggugu ccguugcggu gcuacauucu cuaaucugua 60
ucaccgggug aacacuugca gugguccucg ugguuucu 98
//
ID cel-mir-38 standard; RNA; CEL; 95 BP.
XX
AC MI0000009;
XX
DE Caenorhabditis elegans miR-38 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; Y62F5A/17162-17259; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0020305"
FT /product="cel-miR-38-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 58..79
FT /accession="MIMAT0000009"
FT /product="cel-miR-38-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], 454 [4], Illumina
FT [5,7], CLIPseq [6]"
XX
SQ Sequence 95 BP; 23 A; 22 C; 25 G; 0 T; 25 other;
gugagccagg uccuguuccg guuuuuuccg uggugauaac gcauccaaaa gucucuauca 60
ccgggagaaa aacuggagua ggaccuguga cucau 95
//
ID cel-mir-39 standard; RNA; CEL; 87 BP.
XX
AC MI0000010;
XX
DE Caenorhabditis elegans miR-39 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; Y62F5A/17315-17412; .
XX
CC The excised miRNA sequence was initially predicted [1], and confirmed
CC later by sequencing [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0020306"
FT /product="cel-miR-39-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 55..76
FT /accession="MIMAT0000010"
FT /product="cel-miR-39-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2], 454 [3], Illumina
FT [4,6], CLIPseq [5]"
XX
SQ Sequence 87 BP; 19 A; 19 C; 22 G; 0 T; 27 other;
uauaccgaga gcccagcuga uuucgucuug guaauaagcu cgucauugag auuaucaccg 60
gguguaaauc agcuuggcuc ugguguc 87
//
ID cel-mir-40 standard; RNA; CEL; 92 BP.
XX
AC MI0000011;
XX
DE Caenorhabditis elegans miR-40 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; Y62F5A/17411-17507; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0020307"
FT /product="cel-miR-40-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 56..77
FT /accession="MIMAT0000011"
FT /product="cel-miR-40-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], 454 [4], Illumina
FT [5,7], CLIPseq [6]"
XX
SQ Sequence 92 BP; 24 A; 21 C; 24 G; 0 T; 23 other;
uccuguccgc accucagugg auguaugcca ugaugauaag auaucagaaa uccuaucacc 60
ggguguacau cagcuaaggu gcggguacag gu 92
//
ID cel-mir-41 standard; RNA; CEL; 97 BP.
XX
AC MI0000012;
XX
DE Caenorhabditis elegans miR-41 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; Y62F5A/17540-17636; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0020770"
FT /product="cel-miR-41-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 61..82
FT /accession="MIMAT0000012"
FT /product="cel-miR-41-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4,6],
FT CLIPseq [5]"
XX
SQ Sequence 97 BP; 22 A; 25 C; 23 G; 0 T; 27 other;
gggucccaga gaccuuggug guuuuucucu gcagugauag auacuucuaa caacucgcua 60
ucaccgggug aaaaaucacc uaggucugga gccuccu 97
//
ID cel-mir-42 standard; RNA; CEL; 95 BP.
XX
AC MI0000013;
XX
DE Caenorhabditis elegans miR-42 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
RN [3]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [4]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; ZK930/12429-12523; .
XX
CC The extents of the dominant mature miRNA species are adjusted here in
CC accordance with a large scale cloning and sequencing study [5].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..38
FT /accession="MIMAT0015095"
FT /product="cel-miR-42-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [7]"
FT miRNA 60..81
FT /accession="MIMAT0000013"
FT /product="cel-miR-42-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1], 454 [5], Illumina
FT [6], CLIPseq [7]"
XX
SQ Sequence 95 BP; 16 A; 20 C; 26 G; 0 T; 33 other;
uucgcggacc uuugugggug uuugcuuuuu cggugaaguu gucuuccgua gcuucuucuu 60
caccggguua acaucuacag agguccaaaa agggg 95
//
ID cel-mir-43 standard; RNA; CEL; 98 BP.
XX
AC MI0000014;
XX
DE Caenorhabditis elegans miR-43 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
RN [3]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [4]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; ZK930/12528-12625; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..44
FT /accession="MIMAT0020308"
FT /product="cel-miR-43-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 61..83
FT /accession="MIMAT0000014"
FT /product="cel-miR-43-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1], 454 [5], Illumina
FT [6-7]"
XX
SQ Sequence 98 BP; 25 A; 23 C; 25 G; 0 T; 25 other;
uauuggcacu agucgcccgu gacaucaaga aacuagugau uaugccaaac cacagggaca 60
uaucacaguu uacuugcugu cgcgggcggu gcugaguu 98
//
ID cel-mir-44 standard; RNA; CEL; 96 BP.
XX
AC MI0000015;
XX
DE Caenorhabditis elegans miR-44 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; ZK930/12641-12736; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0020771"
FT /product="cel-miR-44-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 61..81
FT /accession="MIMAT0000015"
FT /product="cel-miR-44-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], 454 [4], Illumina
FT [5,7], CLIPseq [6]"
XX
SQ Sequence 96 BP; 26 A; 22 C; 22 G; 0 T; 26 other;
gagaaaaugg ccaaucugga ugugcucguu ggucauagac gucaacacga acuguucaua 60
ugacuagaga cacauucagc uuggccugcu ucucua 96
//
ID cel-mir-45 standard; RNA; CEL; 96 BP.
XX
AC MI0000016;
XX
DE Caenorhabditis elegans miR-45 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; ZK930/3657-3562; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0020772"
FT /product="cel-miR-45-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 61..81
FT /accession="MIMAT0000016"
FT /product="cel-miR-45-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], 454 [4], Illumina
FT [5,7], CLIPseq [6]"
XX
SQ Sequence 96 BP; 27 A; 26 C; 21 G; 0 T; 22 other;
caccaugugc cacgcuggau gugcucguua gucauaauau ccuccacaaa gcaaggacua 60
ugacuagaga cacauucagc uuggcgccga augcau 96
//
ID cel-mir-46 standard; RNA; CEL; 97 BP.
XX
AC MI0000017;
XX
DE Caenorhabditis elegans miR-46 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; ZK525/4728-4824; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0015096"
FT /product="cel-miR-46-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [6], Illumina [7]"
FT miRNA 61..82
FT /accession="MIMAT0000017"
FT /product="cel-miR-46-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], 454 [4], Illumina
FT [5,7], CLIPseq [6]"
XX
SQ Sequence 97 BP; 22 A; 21 C; 28 G; 0 T; 26 other;
cugaggugaa gcugaagaga gccgucuauu gacaguucaa gaccacgagu cguugugugc 60
ugucauggag ucgcucucuu cagaugaucc ggucaau 97
//
ID cel-mir-47 standard; RNA; CEL; 97 BP.
XX
AC MI0000018;
XX
DE Caenorhabditis elegans miR-47 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; K02B9/506-602; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0015097"
FT /product="cel-miR-47-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [7]"
FT miRNA 61..82
FT /accession="MIMAT0000018"
FT /product="cel-miR-47-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], PCR [4], 454 [5],
FT Illumina [6], CLIPseq [7]"
XX
SQ Sequence 97 BP; 24 A; 22 C; 26 G; 0 T; 25 other;
gagagccgac ugaaacugaa gagagcaguc uauugacagu cgguuacucg aaaucuuuac 60
ugucauggag gcgcucucuu cagaugaugu cuggccc 97
//
ID cel-mir-48 standard; RNA; CEL; 98 BP.
XX
AC MI0000019;
XX
DE Caenorhabditis elegans miR-48 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; WBGene00003039; lin-58.
DR ENTREZGENE; 260115; lin-58.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000019"
FT /product="cel-miR-48-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5], CLIPseq
FT [6]"
FT miRNA 54..75
FT /accession="MIMAT0015098"
FT /product="cel-miR-48-3p"
FT /evidence=experimental
FT /experiment="CLIPseq [6]"
XX
SQ Sequence 98 BP; 25 A; 25 C; 23 G; 0 T; 25 other;
aaacucccgg gaacuugagg uaggcucagu agaugcgaau ugaacgguau cucacaucca 60
ccagccuagc ucgcauuccc agaguuuacg guauuguu 98
//
ID cel-mir-49 standard; RNA; CEL; 97 BP.
XX
AC MI0000020;
XX
DE Caenorhabditis elegans miR-49 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F19C6/9366-9462; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..43
FT /accession="MIMAT0020309"
FT /product="cel-miR-49-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 61..82
FT /accession="MIMAT0000020"
FT /product="cel-miR-49-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4,6],
FT CLIPseq [5]"
XX
SQ Sequence 97 BP; 26 A; 20 C; 25 G; 0 T; 26 other;
uuuugaaaaa gaccaccguc cgcaguuugu ugugaugugc uccaagcaau caugagucug 60
aagcaccacg agaagcugca gauggagguu cugauuu 97
//
ID cel-mir-50 standard; RNA; CEL; 99 BP.
XX
AC MI0000021;
XX
DE Caenorhabditis elegans miR-50 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; Y71G12B/98208-98306; .
XX
CC The extents of the dominant mature miRNA species are adjusted here in
CC accordance with a large scale cloning and sequencing study [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0000021"
FT /product="cel-miR-50-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4,6],
FT CLIPseq [5]"
FT miRNA 58..79
FT /accession="MIMAT0020310"
FT /product="cel-miR-50-3p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
XX
SQ Sequence 99 BP; 17 A; 26 C; 31 G; 0 T; 25 other;
cugcccgccg gccgcugaua ugucugguau ucuuggguuu gaacuuccag cguugaaccc 60
gcauauuaga cguaucgacg gccggcgggg cagguaaug 99
//
ID cel-mir-51 standard; RNA; CEL; 100 BP.
XX
AC MI0000022;
XX
DE Caenorhabditis elegans miR-51 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR RFAM; RF00104; mir-10.
DR WORMBASE; F36H1/2915-2816; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0000022"
FT /product="cel-miR-51-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5], CLIPseq
FT [6]"
FT miRNA 57..78
FT /accession="MIMAT0015099"
FT /product="cel-miR-51-3p"
FT /evidence=experimental
FT /experiment="CLIPseq [6]"
XX
SQ Sequence 100 BP; 28 A; 23 C; 28 G; 0 T; 21 other;
guccgaaaag uccgucuacc cguagcuccu auccauguua cuggucaaaa agugaacaug 60
gaagcaggua caggugcacg gcgaguaggg ucaugaagcu 100
//
ID cel-mir-52 standard; RNA; CEL; 100 BP.
XX
AC MI0000023;
XX
DE Caenorhabditis elegans miR-52 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
RN [3]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [4]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [8]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; Y37A1B/60854-60953; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..40
FT /accession="MIMAT0000023"
FT /product="cel-miR-52-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1], 454 [5], Illumina
FT [6,8], CLIPseq [7]"
FT miRNA 58..79
FT /accession="MIMAT0020311"
FT /product="cel-miR-52-3p"
FT /evidence=experimental
FT /experiment="Illumina [8]"
XX
SQ Sequence 100 BP; 26 A; 24 C; 22 G; 0 T; 28 other;
uccaacucua acaguccacc cguacauaug uuuccgugcu ugacagcgaa gcucaaucac 60
guuacaauga aaggguagcc gguuauugaa guugggucuu 100
//
ID cel-mir-53 standard; RNA; CEL; 99 BP.
XX
AC MI0000024;
XX
DE Caenorhabditis elegans miR-53 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F36H1/4494-4396; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0000024"
FT /product="cel-miR-53-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4,6],
FT CLIPseq [5]"
FT miRNA 57..78
FT /accession="MIMAT0020312"
FT /product="cel-miR-53-3p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
XX
SQ Sequence 99 BP; 23 A; 26 C; 20 G; 0 T; 30 other;
ccgauucuga caguccaccc guacauuugu uuccgugcuu gacuucaaag cucaaucacg 60
gcacaauaua ugggucgcca gucauuguag ucggaauuu 99
//
ID cel-mir-54 standard; RNA; CEL; 99 BP.
XX
AC MI0000025;
XX
DE Caenorhabditis elegans miR-54 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F09A5/18644-18546; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0020773"
FT /product="cel-miR-54-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 61..84
FT /accession="MIMAT0000025"
FT /product="cel-miR-54-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5,7],
FT CLIPseq [6]"
XX
SQ Sequence 99 BP; 27 A; 21 C; 24 G; 0 T; 27 other;
gugagucgcg cucugacuag gauaugagac gacgagaaca uugcuuuuuu aaaagacuug 60
uacccguaau cuucauaauc cgagucaggg cuagcugac 99
//
ID cel-mir-55 standard; RNA; CEL; 98 BP.
XX
AC MI0000026;
XX
DE Caenorhabditis elegans miR-55 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F09A5/18474-18377; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0020313"
FT /product="cel-miR-55-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 61..83
FT /accession="MIMAT0000026"
FT /product="cel-miR-55-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5-6]"
XX
SQ Sequence 98 BP; 23 A; 20 C; 20 G; 0 T; 35 other;
agauuuggaa cuuaauggga cucggcagaa accuaucggu uauacuuuuu ggauaugcua 60
uacccguaua aguuucugcu gagccccuua uuccuguu 98
//
ID cel-mir-56 standard; RNA; CEL; 97 BP.
XX
AC MI0000027;
XX
DE Caenorhabditis elegans miR-56 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; F09A5/18337-18241; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..42
FT /accession="MIMAT0000027"
FT /product="cel-miR-56-5p"
FT /evidence=experimental
FT /experiment="cloned [1], CLIPseq [7]"
FT miRNA 61..82
FT /accession="MIMAT0000028"
FT /product="cel-miR-56-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], PCR [4], 454 [5],
FT Illumina [6], CLIPseq [7]"
XX
SQ Sequence 97 BP; 18 A; 25 C; 24 G; 0 T; 30 other;
gagccagugu cuguucuugg cggauccauu uuggguugua ccucauccua aauuugacgg 60
uacccguaau guuuccgcug agaaccgacu gugcacc 97
//
ID cel-mir-57 standard; RNA; CEL; 99 BP.
XX
AC MI0000028;
XX
DE Caenorhabditis elegans miR-57 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR RFAM; RF00104; mir-10.
DR WORMBASE; T09A5/18697-18599; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0000029"
FT /product="cel-miR-57-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4,6],
FT CLIPseq [5]"
FT miRNA 55..76
FT /accession="MIMAT0020314"
FT /product="cel-miR-57-3p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
XX
SQ Sequence 99 BP; 33 A; 22 C; 21 G; 0 T; 23 other;
aucgacaugc ucgucuaccc uguagaucga gcuguguguu ugaaacaauc auacacgagc 60
uagacuacaa ggugcacgaa caaaccgaag auuuaugaa 99
//
ID cel-mir-58a standard; RNA; CEL; 97 BP.
XX
AC MI0000029;
XX
DE Caenorhabditis elegans miR-58 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
RN [3]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [4]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; Y67D8A/16188-16284; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0015100"
FT /product="cel-miR-58a-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [7]"
FT miRNA 61..82
FT /accession="MIMAT0000030"
FT /product="cel-miR-58a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], 454 [5], Illumina [6], CLIPseq
FT [7]"
XX
SQ Sequence 97 BP; 23 A; 27 C; 20 G; 0 T; 27 other;
gcucgucaua uccauugccc uacucuucgc aucucaucac uucguccaau accauaggga 60
ugagaucguu caguacggca auggacugag cuagagu 97
//
ID cel-mir-59 standard; RNA; CEL; 100 BP.
XX
AC MI0000030;
XX
DE Caenorhabditis elegans miR-59 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; B0035/14964-14865; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0015101"
FT /product="cel-miR-59-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [5]"
FT miRNA 63..85
FT /accession="MIMAT0000031"
FT /product="cel-miR-59-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4], CLIPseq
FT [5]"
XX
SQ Sequence 100 BP; 38 A; 14 C; 19 G; 0 T; 29 other;
aguugaucua gauaugacau cguccugaaa acgaaacgga acaaaaguuc aagauauuga 60
uuucgaaucg uuuaucagga ugaugugauu aaaaucaacu 100
//
ID cel-mir-60 standard; RNA; CEL; 98 BP.
XX
AC MI0000031;
XX
DE Caenorhabditis elegans miR-60 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
RN [3]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [4]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; C32D5/16788-16691; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0015102"
FT /product="cel-miR-60-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [7]"
FT miRNA 61..83
FT /accession="MIMAT0000032"
FT /product="cel-miR-60-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], 454 [5], Illumina [6], CLIPseq
FT [7]"
XX
SQ Sequence 98 BP; 33 A; 18 C; 19 G; 0 T; 28 other;
cucgaaaacc gcuuguucuu gaacuggaag agugccauaa aaucaugaca aaguacguga 60
uauuaugcac auuuucuagu ucaagacuug agaaaucg 98
//
ID cel-mir-61 standard; RNA; CEL; 97 BP.
XX
AC MI0000032;
XX
DE Caenorhabditis elegans miR-61 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; F55A11/6731-6635; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0015103"
FT /product="cel-miR-61-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [6]"
FT miRNA 61..81
FT /accession="MIMAT0000033"
FT /product="cel-miR-61-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5], CLIPseq
FT [6]"
XX
SQ Sequence 97 BP; 19 A; 24 C; 24 G; 0 T; 30 other;
uuccauuauc gcugaaccuc gagauggguu acggggcuua guccuuccuc cguauggcaa 60
ugacuagaac cguuacucau cucgagguuu cggugau 97
//
ID cel-mir-62 standard; RNA; CEL; 58 BP.
XX
AC MI0000033;
XX
DE Caenorhabditis elegans miR-62 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
RN [3]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 17589500.
RA Ruby JG, Jan CH, Bartel DP;
RT "Intronic microRNA precursors that bypass Drosha processing";
RL Nature. 448:83-86(2007).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; T07C5/11823-11894; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 37..58
FT /accession="MIMAT0000034"
FT /product="cel-miR-62"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [6], CLIPseq
FT [7]"
XX
SQ Sequence 58 BP; 19 A; 10 C; 11 G; 0 T; 18 other;
gugaguuaga ucucauaucc uuccgcaaaa uggaaaugau auguaaucua gcuuacag 58
//
ID cel-mir-63 standard; RNA; CEL; 104 BP.
XX
AC MI0000034;
XX
DE Caenorhabditis elegans miR-63 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; C16H3/369-266; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0015104"
FT /product="cel-miR-63-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [5]"
FT miRNA 61..84
FT /accession="MIMAT0000035"
FT /product="cel-miR-63-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4], CLIPseq
FT [5]"
XX
SQ Sequence 104 BP; 34 A; 21 C; 23 G; 0 T; 26 other;
ucaacaagca gacacaauuu cuaacucguc gguagucauc guucuagcug aaaaggacac 60
uaugacacug aagcgaguug gaaauagugg uucuacuuga gcaa 104
//
ID cel-mir-64 standard; RNA; CEL; 110 BP.
XX
AC MI0000035;
XX
DE Caenorhabditis elegans miR-64 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; Y48G9A/92980-93089; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0000036"
FT /product="cel-miR-64-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], 454 [3], Illumina
FT [4], CLIPseq [5]"
FT miRNA 68..88
FT /accession="MIMAT0015105"
FT /product="cel-miR-64-3p"
FT /evidence=experimental
FT /experiment="CLIPseq [5]"
XX
SQ Sequence 110 BP; 24 A; 35 C; 26 G; 0 T; 25 other;
cuccccgcug accucgccga auaugacacu gaagcguuac cgaaccguuu ucccacaccu 60
ggauucggug caacgaucag uggcaugcuc ggcuagcgcc aguuaaguau 110
//
ID cel-mir-65 standard; RNA; CEL; 100 BP.
XX
AC MI0000036;
XX
DE Caenorhabditis elegans miR-65 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; Y48G9A/93134-93233; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..40
FT /accession="MIMAT0000037"
FT /product="cel-miR-65-5p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2-3], 454 [4], Illumina
FT [5], CLIPseq [6]"
FT miRNA 58..78
FT /accession="MIMAT0015106"
FT /product="cel-miR-65-3p"
FT /evidence=experimental
FT /experiment="CLIPseq [6]"
XX
SQ Sequence 100 BP; 24 A; 27 C; 24 G; 0 T; 25 other;
auggagccuu cgccgauuau gacacugaag cguaaccgaa caccauauuu ugagauucug 60
cuacgcgcag ugccaugcuc ggcgcguugg cuccauuaaa 100
//
ID cel-mir-66 standard; RNA; CEL; 99 BP.
XX
AC MI0000037;
XX
DE Caenorhabditis elegans miR-66 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; Y48G9A/93240-93338; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0000038"
FT /product="cel-miR-66-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], 454 [3], Illumina
FT [4-5]"
FT miRNA 60..80
FT /accession="MIMAT0020315"
FT /product="cel-miR-66-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 99 BP; 32 A; 18 C; 23 G; 0 T; 26 other;
ccacaaaaau gccauacaug acacugauua gggaugugau gaauguuaag aucccgauca 60
aauuccuaac ggugucaaac auggcguaug ugguuguag 99
//
ID cel-mir-67 standard; RNA; CEL; 99 BP.
XX
AC MI0000038;
XX
DE Caenorhabditis elegans miR-67 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; EGAP1/4494-4396; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0020316"
FT /product="cel-miR-67-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 61..84
FT /accession="MIMAT0000039"
FT /product="cel-miR-67-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4,6],
FT CLIPseq [5]"
XX
SQ Sequence 99 BP; 30 A; 21 C; 17 G; 0 T; 31 other;
gaucaaagau ucgucgaucc gcucauucug ccgguuguua ugcuauuauc agauuaagca 60
ucacaaccuc cuagaaagag uagaucgauu uuaaaacuu 99
//
ID cel-mir-70 standard; RNA; CEL; 100 BP.
XX
AC MI0000041;
XX
DE Caenorhabditis elegans miR-70 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; T10H9/32413-32314; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..47
FT /accession="MIMAT0020317"
FT /product="cel-miR-70-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 62..84
FT /accession="MIMAT0000042"
FT /product="cel-miR-70-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5,7],
FT CLIPseq [6]"
XX
SQ Sequence 100 BP; 39 A; 13 C; 16 G; 0 T; 32 other;
ucaaaauaaa acgaugaaaa cuaucgaaau acuaucgacg aauaacacuu augaagaaau 60
guaauacguc guugguguuu ccauaguuug aauuguuuau 100
//
ID cel-mir-71 standard; RNA; CEL; 94 BP.
XX
AC MI0000042;
XX
DE Caenorhabditis elegans miR-71 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F16A11/5547-5454; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000043"
FT /product="cel-miR-71-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5,7],
FT CLIPseq [6]"
FT miRNA 53..73
FT /accession="MIMAT0015107"
FT /product="cel-miR-71-3p"
FT /evidence=experimental
FT /experiment="CLIPseq [6], Illumina [7]"
XX
SQ Sequence 94 BP; 19 A; 21 C; 28 G; 0 T; 26 other;
gucugcucug aacgaugaaa gacaugggua gugagacguc ggagccucgu cguaucacua 60
uucuguuuuu cgccgucggg aucgugaccu ggaa 94
//
ID cel-mir-72 standard; RNA; CEL; 99 BP.
XX
AC MI0000043;
XX
DE Caenorhabditis elegans miR-72 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
RN [3]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [4]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [8]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F53G2/2401-2495; .
XX
CC The expression of C. elegans miR-72 was confirmed by PCR amplification,
CC cloning and sequencing. The predicted hairpin precursor sequence presented
CC here is supported by conservation in C. elegans and C. briggsae
CC (MIR:MI0000751), and differs from that shown in [1] (Uwe Ohler, pers.
CC comm.). The extents of the dominant mature miRNA species are adjusted
CC here in accordance with a large scale cloning and sequencing study [5].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0000044"
FT /product="cel-miR-72-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], 454 [5], Illumina [6,8],
FT CLIPseq [7]"
FT miRNA 61..82
FT /accession="MIMAT0020318"
FT /product="cel-miR-72-3p"
FT /evidence=experimental
FT /experiment="Illumina [8]"
XX
SQ Sequence 99 BP; 26 A; 26 C; 24 G; 0 T; 23 other;
aggucccguc agagcuaggc aagauguugg cauagcugaa ugaucgcuau aacaacuauc 60
agcuucgcca cauucugcca cgcacugaug ugaggaccu 99
//
ID cel-mir-73 standard; RNA; CEL; 99 BP.
XX
AC MI0000044;
XX
DE Caenorhabditis elegans miR-73 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; T24D8/30624-30722; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..46
FT /accession="MIMAT0020319"
FT /product="cel-miR-73-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 62..84
FT /accession="MIMAT0000045"
FT /product="cel-miR-73-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5,7],
FT CLIPseq [6]"
XX
SQ Sequence 99 BP; 26 A; 23 C; 26 G; 0 T; 24 other;
cagugagagu cccacacacg acuggacuuc cauaucgagc cacagcuauc aacgaauuug 60
cuggcaagau guaggcaguu caguugugcg uuuauggag 99
//
ID cel-mir-74 standard; RNA; CEL; 97 BP.
XX
AC MI0000045;
XX
DE Caenorhabditis elegans miR-74 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; T24D8/30902-30998; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0020320"
FT /product="cel-miR-74-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 61..82
FT /accession="MIMAT0000046"
FT /product="cel-miR-74-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5,7],
FT CLIPseq [6]"
XX
SQ Sequence 97 BP; 28 A; 27 C; 17 G; 0 T; 25 other;
aaaugguuca aaaaacguuc gggcuuccau cucuuuccca gccuacaucu caaccugggc 60
uggcaagaaa uggcagucua cacguuuuuc aaccaaa 97
//
ID cel-mir-75 standard; RNA; CEL; 97 BP.
XX
AC MI0000046;
XX
DE Caenorhabditis elegans miR-75 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; T24D8/34313-34409; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0015108"
FT /product="cel-miR-75-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [5], Illumina [6]"
FT miRNA 61..82
FT /accession="MIMAT0000047"
FT /product="cel-miR-75-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4,6],
FT CLIPseq [5]"
XX
SQ Sequence 97 BP; 30 A; 18 C; 20 G; 0 T; 29 other;
uucuuguugc uuugaagaau ugcagucggu ugcaagcuua aauacaaauc cgaauuguua 60
uuaaagcuac caaccggcuu caagucugaa agagcag 97
//
ID cel-mir-76 standard; RNA; CEL; 97 BP.
XX
AC MI0000047;
XX
DE Caenorhabditis elegans miR-76 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; C44B11/10451-10547; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0020321"
FT /product="cel-miR-76-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 61..82
FT /accession="MIMAT0000048"
FT /product="cel-miR-76-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4,6],
FT CLIPseq [5]"
XX
SQ Sequence 97 BP; 27 A; 15 C; 23 G; 0 T; 32 other;
auuucagcuc cugucugggc uucacaauag ucgaauaccu uaaauuucaa aauuuggaua 60
uucguuguug augaagccuu gaugggggug agaaaga 97
//
ID cel-mir-77 standard; RNA; CEL; 100 BP.
XX
AC MI0000048;
XX
DE Caenorhabditis elegans miR-77 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; T21B4/29149-29248; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0020774"
FT /product="cel-miR-77-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 62..83
FT /accession="MIMAT0000049"
FT /product="cel-miR-77-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4,6],
FT CLIPseq [5]"
XX
SQ Sequence 100 BP; 25 A; 22 C; 25 G; 0 T; 28 other;
gcaucugcca aaccgcccgu uuggaugguu gugcucugag gaaauacgca cagaauguca 60
uuucaucagg ccauagcugu ccaaauuggu auagaguuug 100
//
ID cel-mir-78 standard; RNA; CEL; 96 BP.
XX
AC MI0000049;
XX
DE Caenorhabditis elegans miR-78 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
DR WORMBASE; Y40H7A/25290-25385; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..81
FT /accession="MIMAT0000050"
FT /product="cel-miR-78"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4]"
XX
SQ Sequence 96 BP; 30 A; 9 C; 20 G; 0 T; 37 other;
aauaaaauau auuguuucau aguguccgua aaauaacuag auuuauuuug uaaaaacuau 60
uggaggccug guuguuugug cuggaauguu ucgaga 96
//
ID cel-mir-79 standard; RNA; CEL; 98 BP.
XX
AC MI0000050;
XX
DE Caenorhabditis elegans miR-79 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [8]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; C12C8/13303-13400; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0020322"
FT /product="cel-miR-79-5p"
FT /evidence=experimental
FT /experiment="Illumina [8]"
FT miRNA 61..82
FT /accession="MIMAT0000051"
FT /product="cel-miR-79-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], PCR [4], 454 [5], Illumina
FT [6,8], CLIPseq [7]"
XX
SQ Sequence 98 BP; 23 A; 21 C; 20 G; 0 T; 34 other;
uaguagacau ucuccgaucu uuggugauuc agcuucaaug auuggcuaca gguuucuuuc 60
auaaagcuag guuaccaaag cucggcgucu ugaucuac 98
//
ID cel-mir-80 standard; RNA; CEL; 98 BP.
XX
AC MI0000051;
XX
DE Caenorhabditis elegans miR-80/miR-227 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; K01F9/1056-959; .
XX
CC mir-80 is conserved in C.briggsae (MIR:MI0000518) [1]. Reference [3]
CC reports the identification of miR-227, which appears to be expressed from
CC the 5' arm of the same precursor.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0000052"
FT /product="cel-miR-80-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [6], CLIPseq [7]"
FT miRNA 61..83
FT /accession="MIMAT0000053"
FT /product="cel-miR-80-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1], 454 [5], Illumina
FT [6], CLIPseq [7]"
XX
SQ Sequence 98 BP; 28 A; 22 C; 21 G; 0 T; 27 other;
auggacacuc guucgcucag cuuucgacau gauucugaac aauccgcaag cccauguugu 60
ugagaucauu aguugaaagc cgaaugauca gagauauc 98
//
ID cel-mir-81 standard; RNA; CEL; 108 BP.
XX
AC MI0000052;
XX
DE Caenorhabditis elegans miR-81 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
RN [3]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [4]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [5]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [6]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [7]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; T07D1/14195-14302; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0015109"
FT /product="cel-miR-81-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [7]"
FT miRNA 67..88
FT /accession="MIMAT0000054"
FT /product="cel-miR-81-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], 454 [5], Illumina [6], CLIPseq
FT [7]"
XX
SQ Sequence 108 BP; 25 A; 24 C; 26 G; 0 T; 33 other;
aucagugcca ucgugcccaa cagucgguuu ucaccgugau cugagagcaa uccaaaaaug 60
cuuuucugag aucaucguga aagcuaguug uuggucuacg ggcuuuug 108
//
ID cel-mir-82 standard; RNA; CEL; 97 BP.
XX
AC MI0000053;
XX
DE Caenorhabditis elegans miR-82 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; T07D1/18477-18381; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0020323"
FT /product="cel-miR-82-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 61..82
FT /accession="MIMAT0000055"
FT /product="cel-miR-82-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4,6],
FT CLIPseq [5]"
XX
SQ Sequence 97 BP; 26 A; 18 C; 20 G; 0 T; 33 other;
gaaauagguu cuuuuagcaa ccgguuuucu cugugaucua cagaaugaca gcuaaucguc 60
ugagaucauc gugaaagcca guuguuuuua ugaacuc 97
//
ID cel-mir-83 standard; RNA; CEL; 98 BP.
XX
AC MI0000054;
XX
DE Caenorhabditis elegans miR-83 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; C06A6/16005-16102; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0020775"
FT /product="cel-miR-83-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 61..82
FT /accession="MIMAT0000056"
FT /product="cel-miR-83-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5,7],
FT CLIPseq [6]"
XX
SQ Sequence 98 BP; 30 A; 24 C; 20 G; 0 T; 24 other;
agcaccacuc ggaaccacug aauuuaugug uguacuugac ggccaacaag agcaucgauc 60
uagcaccaua uaaauucagu aauuucgcgu cgagagcu 98
//
ID cel-mir-84 standard; RNA; CEL; 75 BP.
XX
AC MI0000055;
XX
DE Caenorhabditis elegans miR-84 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; B0395/3359-3285; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..32
FT /accession="MIMAT0000057"
FT /product="cel-miR-84-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], 454 [4], Illumina
FT [5,7], CLIPseq [6]"
FT miRNA 47..69
FT /accession="MIMAT0015110"
FT /product="cel-miR-84-3p"
FT /evidence=experimental
FT /experiment="CLIPseq [6], Illumina [7]"
XX
SQ Sequence 75 BP; 19 A; 13 C; 16 G; 0 T; 27 other;
guggcaucug agguaguaug uaauauugua gacugucuau aauguccaca auguuucaac 60
uaacucggcu guucu 75
//
ID cel-mir-85 standard; RNA; CEL; 106 BP.
XX
AC MI0000056;
XX
DE Caenorhabditis elegans miR-85 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F49E12/16076-16181; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0020324"
FT /product="cel-miR-85-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 65..88
FT /accession="MIMAT0000058"
FT /product="cel-miR-85-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5,7],
FT CLIPseq [6]"
XX
SQ Sequence 106 BP; 35 A; 15 C; 21 G; 0 T; 35 other;
uauagaauuu uggcgucgga gcccgauuuu ucaauaguuu gaaaccagug uacacauaaa 60
ugguuacaaa guauuugaaa agucgugcuc ugaaaaugaa uucuua 106
//
ID cel-mir-86 standard; RNA; CEL; 98 BP.
XX
AC MI0000057;
XX
DE Caenorhabditis elegans miR-86 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; Y56A3A/102935-102838; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000059"
FT /product="cel-miR-86-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5,7],
FT CLIPseq [6]"
FT miRNA 60..81
FT /accession="MIMAT0020776"
FT /product="cel-miR-86-3p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
XX
SQ Sequence 98 BP; 20 A; 25 C; 27 G; 0 T; 26 other;
cguguccacg ccgucuaagu gaaugcuuug ccacagucuu cgauguucug aaaugaagcc 60
ugggcucaga uucgcuuagg ccggaguuug acacggca 98
//
ID cel-mir-87 standard; RNA; CEL; 94 BP.
XX
AC MI0000058;
XX
DE Caenorhabditis elegans miR-87 stem-loop
XX
RN [1]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F10C2/16068-15975; .
XX
CC mir-87 is has found to be most abundant in the L1 stage of larval
CC development in Caenorhabditis elegans. mir-87 orthologues have been found
CC in C. briggsae, Drosophila melanogaster and humans [1]. The extents of
CC the dominant mature miRNA species are adjusted here in accordance with a
CC large scale cloning and sequencing study [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..40
FT /accession="MIMAT0020325"
FT /product="cel-miR-87-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 61..82
FT /accession="MIMAT0000060"
FT /product="cel-miR-87-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5,7],
FT CLIPseq [6]"
XX
SQ Sequence 94 BP; 17 A; 27 C; 26 G; 0 T; 24 other;
gguugugcca uccggccgcc ugauacuuuc gucucaaccu cgcugucaga uuggucguag 60
gugagcaaag uuucaggugu gccggaacac accc 94
//
ID cel-mir-90 standard; RNA; CEL; 98 BP.
XX
AC MI0000059;
XX
DE Caenorhabditis elegans miR-90 stem-loop
XX
RN [1]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [3]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; K01F9/9773-9676; .
XX
CC mir-90 is has found to be most abundant in the L1 stage of larval
CC development in Caenorhabditis elegans [1]. The extents of the dominant
CC mature miRNA species are adjusted here in accordance with a large scale
CC cloning and sequencing study [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0020326"
FT /product="cel-miR-90-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 62..84
FT /accession="MIMAT0000061"
FT /product="cel-miR-90-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5,7],
FT CLIPseq [6]"
XX
SQ Sequence 98 BP; 22 A; 24 C; 23 G; 0 T; 29 other;
gggcgccauu ucgagcggcu uucaacgacg auaucaaccg acaacucaca cuuuugcgug 60
uugauauguu guuugaaugc cccuugaauu ggaugcca 98
//
ID hsa-let-7a-1 standard; RNA; HSA; 80 BP.
XX
AC MI0000060;
XX
DE Homo sapiens let-7a-1 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [5]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [8]
RX PUBMED; 17989717.
RA Marton S, Garcia MR, Robello C, Persson H, Trajtenberg F, Pritsch O,
RA Rovira C, Naya H, Dighiero G, Cayota A;
RT "Small RNAs analysis in CLL reveals a deregulation of miRNA expression and
RT novel miRNA candidates of putative relevance in CLL pathogenesis";
RL Leukemia. 22:330-338(2008).
XX
RN [9]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR RFAM; RF00027; let-7.
DR TARGETS:PICTAR-VERT; hsa-let-7a; hsa-let-7a.
DR HGNC; 31476; MIRLET7A1.
DR ENTREZGENE; 406881; MIRLET7A1.
XX
CC let-7a-3p cloned in [6] has a 1 nt 3' extension (U), which is incompatible
CC with the genome sequence.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000062"
FT /product="hsa-let-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3,5-8], Northern [1], Illumina [9]"
FT miRNA 57..77
FT /accession="MIMAT0004481"
FT /product="hsa-let-7a-3p"
FT /evidence=experimental
FT /experiment="cloned [6]"
XX
SQ Sequence 80 BP; 21 A; 15 C; 19 G; 0 T; 25 other;
ugggaugagg uaguagguug uauaguuuua gggucacacc caccacuggg agauaacuau 60
acaaucuacu gucuuuccua 80
//
ID hsa-let-7a-2 standard; RNA; HSA; 72 BP.
XX
AC MI0000061;
XX
DE Homo sapiens let-7a-2 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [5]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [8]
RX PUBMED; 17989717.
RA Marton S, Garcia MR, Robello C, Persson H, Trajtenberg F, Pritsch O,
RA Rovira C, Naya H, Dighiero G, Cayota A;
RT "Small RNAs analysis in CLL reveals a deregulation of miRNA expression and
RT novel miRNA candidates of putative relevance in CLL pathogenesis";
RL Leukemia. 22:330-338(2008).
XX
RN [9]
RX PUBMED; 19015728.
RA Tzur G, Levy A, Meiri E, Barad O, Spector Y, Bentwich Z, Mizrahi L,
RA Katzenellenbogen M, Ben-Shushan E, Reubinoff BE, Galun E;
RT "MicroRNA expression patterns and function in endodermal differentiation
RT of human embryonic stem cells";
RL PLoS One. 3:e3726(2008).
XX
RN [10]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR RFAM; RF00027; let-7.
DR TARGETS:PICTAR-VERT; hsa-let-7a; hsa-let-7a.
DR HGNC; 31477; MIRLET7A2.
DR ENTREZGENE; 406882; MIRLET7A2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0000062"
FT /product="hsa-let-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3,5-8], Northern [1], Illumina
FT [10]"
FT miRNA 50..71
FT /accession="MIMAT0010195"
FT /product="hsa-let-7a-2-3p"
FT /evidence=experimental
FT /experiment="qRT-PCR [9]"
XX
SQ Sequence 72 BP; 20 A; 11 C; 18 G; 0 T; 23 other;
agguugaggu aguagguugu auaguuuaga auuacaucaa gggagauaac uguacagccu 60
ccuagcuuuc cu 72
//
ID hsa-let-7a-3 standard; RNA; HSA; 74 BP.
XX
AC MI0000062;
XX
DE Homo sapiens let-7a-3 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [5]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [8]
RX PUBMED; 17989717.
RA Marton S, Garcia MR, Robello C, Persson H, Trajtenberg F, Pritsch O,
RA Rovira C, Naya H, Dighiero G, Cayota A;
RT "Small RNAs analysis in CLL reveals a deregulation of miRNA expression and
RT novel miRNA candidates of putative relevance in CLL pathogenesis";
RL Leukemia. 22:330-338(2008).
XX
RN [9]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR RFAM; RF00027; let-7.
DR TARGETS:PICTAR-VERT; hsa-let-7a; hsa-let-7a.
DR HGNC; 31478; MIRLET7A3.
DR ENTREZGENE; 406883; MIRLET7A3.
XX
CC let-7a-3p cloned in [6] has a 1 nt 3' extension (U), which is incompatible
CC with the genome sequence.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0000062"
FT /product="hsa-let-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3,5-8], Northern [1], Illumina [9]"
FT miRNA 52..72
FT /accession="MIMAT0004481"
FT /product="hsa-let-7a-3p"
FT /evidence=experimental
FT /experiment="cloned [6]"
XX
SQ Sequence 74 BP; 14 A; 13 C; 21 G; 0 T; 26 other;
gggugaggua guagguugua uaguuugggg cucugcccug cuaugggaua acuauacaau 60
cuacugucuu uccu 74
//
ID hsa-let-7b standard; RNA; HSA; 83 BP.
XX
AC MI0000063;
XX
DE Homo sapiens let-7b stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR RFAM; RF00027; let-7.
DR TARGETS:PICTAR-VERT; hsa-let-7b; hsa-let-7b.
DR HGNC; 31479; MIRLET7B.
DR ENTREZGENE; 406884; MIRLET7B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000063"
FT /product="hsa-let-7b-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Northern [1]"
FT miRNA 60..81
FT /accession="MIMAT0004482"
FT /product="hsa-let-7b-3p"
FT /evidence=experimental
FT /experiment="cloned [4-5]"
XX
SQ Sequence 83 BP; 16 A; 18 C; 26 G; 0 T; 23 other;
cggggugagg uaguagguug ugugguuuca gggcagugau guugccccuc ggaagauaac 60
uauacaaccu acugccuucc cug 83
//
ID hsa-let-7c standard; RNA; HSA; 84 BP.
XX
AC MI0000064;
XX
DE Homo sapiens let-7c stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [5]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
RN [6]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR RFAM; RF00027; let-7.
DR TARGETS:PICTAR-VERT; hsa-let-7c; hsa-let-7c.
DR HGNC; 31480; MIRLET7C.
DR ENTREZGENE; 406885; MIRLET7C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0000064"
FT /product="hsa-let-7c-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1], Illumina [5-6]"
FT miRNA 56..77
FT /accession="MIMAT0026472"
FT /product="hsa-let-7c-3p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
XX
SQ Sequence 84 BP; 17 A; 16 C; 24 G; 0 T; 27 other;
gcauccgggu ugagguagua gguuguaugg uuuagaguua cacccuggga guuaacugua 60
caaccuucua gcuuuccuug gagc 84
//
ID hsa-let-7d standard; RNA; HSA; 87 BP.
XX
AC MI0000065;
XX
DE Homo sapiens let-7d stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [5]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR RFAM; RF00027; let-7.
DR TARGETS:PICTAR-VERT; hsa-let-7d; hsa-let-7d.
DR HGNC; 31481; MIRLET7D.
DR ENTREZGENE; 406886; MIRLET7D.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0000065"
FT /product="hsa-let-7d-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1], Illumina [5]"
FT miRNA 62..83
FT /accession="MIMAT0004484"
FT /product="hsa-let-7d-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 87 BP; 21 A; 16 C; 26 G; 0 T; 24 other;
ccuaggaaga gguaguaggu ugcauaguuu uagggcaggg auuuugccca caaggaggua 60
acuauacgac cugcugccuu ucuuagg 87
//
ID hsa-let-7e standard; RNA; HSA; 79 BP.
XX
AC MI0000066;
XX
DE Homo sapiens let-7e stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [5]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR RFAM; RF00027; let-7.
DR TARGETS:PICTAR-VERT; hsa-let-7e; hsa-let-7e.
DR HGNC; 31482; MIRLET7E.
DR ENTREZGENE; 406887; MIRLET7E.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0000066"
FT /product="hsa-let-7e-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1], Illumina [5]"
FT miRNA 53..74
FT /accession="MIMAT0004485"
FT /product="hsa-let-7e-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 79 BP; 18 A; 20 C; 25 G; 0 T; 16 other;
cccgggcuga gguaggaggu uguauaguug aggaggacac ccaaggagau cacuauacgg 60
ccuccuagcu uuccccagg 79
//
ID hsa-let-7f-1 standard; RNA; HSA; 87 BP.
XX
AC MI0000067;
XX
DE Homo sapiens let-7f-1 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [6]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR RFAM; RF00027; let-7.
DR TARGETS:PICTAR-VERT; hsa-let-7f; hsa-let-7f.
DR HGNC; 31483; MIRLET7F1.
DR ENTREZGENE; 406888; MIRLET7F1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000067"
FT /product="hsa-let-7f-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Northern [1], Illumina [6]"
FT miRNA 63..84
FT /accession="MIMAT0004486"
FT /product="hsa-let-7f-1-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 87 BP; 22 A; 13 C; 22 G; 0 T; 30 other;
ucagagugag guaguagauu guauaguugu gggguaguga uuuuacccug uucaggagau 60
aacuauacaa ucuauugccu ucccuga 87
//
ID hsa-let-7f-2 standard; RNA; HSA; 83 BP.
XX
AC MI0000068;
XX
DE Homo sapiens let-7f-2 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [6]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR RFAM; RF00027; let-7.
DR TARGETS:PICTAR-VERT; hsa-let-7f; hsa-let-7f.
DR HGNC; 31484; MIRLET7F2.
DR ENTREZGENE; 406889; MIRLET7F2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0000067"
FT /product="hsa-let-7f-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Northern [1], Illumina [6]"
FT miRNA 58..79
FT /accession="MIMAT0004487"
FT /product="hsa-let-7f-2-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 83 BP; 20 A; 15 C; 20 G; 0 T; 28 other;
ugugggauga gguaguagau uguauaguuu uagggucaua ccccaucuug gagauaacua 60
uacagucuac ugucuuuccc acg 83
//
ID hsa-mir-15a standard; RNA; HSA; 83 BP.
XX
AC MI0000069;
XX
DE Homo sapiens miR-15a stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12434020.
RA Calin GA, Dumitru CD, Shimizu M, Bichi R, Zupo S, Noch E, Aldler H, Rattan
RA S, Keating M, Rai K, Rassenti L, Kipps T, Negrini M, Bullrich F, Croce CM;
RT "Frequent deletions and down-regulation of micro- RNA genes miR15 and
RT miR16 at 13q14 in chronic lymphocytic leukemia";
RL Proc Natl Acad Sci U S A. 99:15524-15529(2002).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-15a; hsa-miR-15a.
DR HGNC; 31543; MIR15A.
DR ENTREZGENE; 406948; MIR15A.
XX
CC Reference [1] named this sequence miR-15. This is renamed miR-15a here to
CC avoid confusion with miR-15b (MIR:MI0000438) identified later by others.
CC This gene and miR-16 are clustered within 0.5 kb at 13q14. This region
CC has been shown to be deleted in more than half of B cell chronic
CC lymphocytic leukemias (CLL). Both miR-15a and miR-16 are deleted or
CC down-regulated in more than two thirds of CLL cases [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000068"
FT /product="hsa-miR-15a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-6], Northern [1]"
FT miRNA 51..72
FT /accession="MIMAT0004488"
FT /product="hsa-miR-15a-3p"
FT /evidence=experimental
FT /experiment="cloned [5]"
XX
SQ Sequence 83 BP; 26 A; 13 C; 22 G; 0 T; 22 other;
ccuuggagua aaguagcagc acauaauggu uuguggauuu ugaaaaggug caggccauau 60
ugugcugccu caaaaauaca agg 83
//
ID hsa-mir-16-1 standard; RNA; HSA; 89 BP.
XX
AC MI0000070;
XX
DE Homo sapiens miR-16-1 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [4]
RX PUBMED; 12434020.
RA Calin GA, Dumitru CD, Shimizu M, Bichi R, Zupo S, Noch E, Aldler H, Rattan
RA S, Keating M, Rai K, Rassenti L, Kipps T, Negrini M, Bullrich F, Croce CM;
RT "Frequent deletions and down-regulation of micro- RNA genes miR15 and
RT miR16 at 13q14 in chronic lymphocytic leukemia";
RL Proc Natl Acad Sci U S A. 99:15524-15529(2002).
XX
RN [5]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [6]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [7]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [8]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [9]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-16; hsa-miR-16.
DR HGNC; 31545; MIR16-1.
DR ENTREZGENE; 406950; MIR16-1.
XX
CC Human miR-16 has been cloned by independent groups [1,2]. This precursor
CC sequence maps to chromosome 13, and was named mir-16 in [1] and
CC mir-16-precursor-13 in [2]. Lim et al. reported 2 identical chromosome 13
CC loci, which appear to map to the same locus in subsequent genome
CC assemblies. This gene and miR-15a are clustered within 0.5 kb at 13q14.
CC This region has been shown to be deleted in more than half of B cell
CC chronic lymphocytic leukemias (CLL). Both miR-15a and miR-16 are deleted
CC or down-regulated in more than two thirds of CLL cases [3]. A second
CC putative mir-16 hairpin precursor is located on chromosome 3
CC (MIR:MI0000738).
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000069"
FT /product="hsa-miR-16-5p"
FT /evidence=experimental
FT /experiment="cloned [1,5,7-9], Northern [1,6]"
FT miRNA 56..77
FT /accession="MIMAT0004489"
FT /product="hsa-miR-16-1-3p"
FT /evidence=experimental
FT /experiment="cloned [8]"
XX
SQ Sequence 89 BP; 26 A; 16 C; 20 G; 0 T; 27 other;
gucagcagug ccuuagcagc acguaaauau uggcguuaag auucuaaaau uaucuccagu 60
auuaacugug cugcugaagu aagguugac 89
//
ID hsa-mir-17 standard; RNA; HSA; 84 BP.
XX
AC MI0000071;
XX
DE Homo sapiens miR-17 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [5]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [6]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [7]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [8]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR RFAM; RF00051; mir-17.
DR TARGETS:PICTAR-VERT; hsa-miR-17-3p; hsa-miR-17-3p.
DR TARGETS:PICTAR-VERT; hsa-miR-17-5p; hsa-miR-17-5p.
DR HGNC; 31547; MIR17.
DR ENTREZGENE; 406952; MIR17.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0000070"
FT /product="hsa-miR-17-5p"
FT /evidence=experimental
FT /experiment="cloned [2,5-8], Northern [4]"
FT miRNA 51..72
FT /accession="MIMAT0000071"
FT /product="hsa-miR-17-3p"
FT /evidence=experimental
FT /experiment="cloned [1,5,7-8], Northern [1]"
XX
SQ Sequence 84 BP; 24 A; 13 C; 23 G; 0 T; 24 other;
gucagaauaa ugucaaagug cuuacagugc agguagugau augugcaucu acugcaguga 60
aggcacuugu agcauuaugg ugac 84
//
ID hsa-mir-18a standard; RNA; HSA; 71 BP.
XX
AC MI0000072;
XX
DE Homo sapiens miR-18a stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [4]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 31548; MIR18A.
DR ENTREZGENE; 406953; MIR18A.
XX
CC This sequence maps to chromosome 13 and is named miR-18 precursor-13 in
CC reference [2]. The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [5]. The mature
CC sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [5].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0000072"
FT /product="hsa-miR-18a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-6], Northern [1]"
FT miRNA 47..69
FT /accession="MIMAT0002891"
FT /product="hsa-miR-18a-3p"
FT /evidence=experimental
FT /experiment="cloned [4-6]"
XX
SQ Sequence 71 BP; 17 A; 15 C; 17 G; 0 T; 22 other;
uguucuaagg ugcaucuagu gcagauagug aaguagauua gcaucuacug cccuaagugc 60
uccuucuggc a 71
//
ID hsa-mir-19a standard; RNA; HSA; 82 BP.
XX
AC MI0000073;
XX
DE Homo sapiens miR-19a stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-19a; hsa-miR-19a.
DR HGNC; 31574; MIR19A.
DR ENTREZGENE; 406979; MIR19A.
XX
CC This sequence maps to chromosome 13 and is named miR-19a precursor-13 in
CC reference [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0004490"
FT /product="hsa-miR-19a-5p"
FT /evidence=experimental
FT /experiment="cloned [4]"
FT miRNA 49..71
FT /accession="MIMAT0000073"
FT /product="hsa-miR-19a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-5], Northern [1]"
XX
SQ Sequence 82 BP; 22 A; 15 C; 20 G; 0 T; 25 other;
gcaguccucu guuaguuuug cauaguugca cuacaagaag aauguaguug ugcaaaucua 60
ugcaaaacug augguggccu gc 82
//
ID hsa-mir-19b-1 standard; RNA; HSA; 87 BP.
XX
AC MI0000074;
XX
DE Homo sapiens miR-19b-1 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [4]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [5]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [6]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [7]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [8]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [9]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-19b; hsa-miR-19b.
DR HGNC; 31575; MIR19B1.
DR ENTREZGENE; 406980; MIR19B1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0004491"
FT /product="hsa-miR-19b-1-5p"
FT /evidence=experimental
FT /experiment="cloned [8]"
FT miRNA 54..76
FT /accession="MIMAT0000074"
FT /product="hsa-miR-19b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3,6-9], Northern [1,5]"
XX
SQ Sequence 87 BP; 18 A; 16 C; 22 G; 0 T; 31 other;
cacuguucua ugguuaguuu ugcagguuug cauccagcug ugugauauuc ugcugugcaa 60
auccaugcaa aacugacugu gguagug 87
//
ID hsa-mir-19b-2 standard; RNA; HSA; 96 BP.
XX
AC MI0000075;
XX
DE Homo sapiens miR-19b-2 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [4]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [5]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [6]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [7]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [8]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [9]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-19b; hsa-miR-19b.
DR HGNC; 31576; MIR19B2.
DR ENTREZGENE; 406981; MIR19B2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0004492"
FT /product="hsa-miR-19b-2-5p"
FT /evidence=experimental
FT /experiment="cloned [8]"
FT miRNA 62..84
FT /accession="MIMAT0000074"
FT /product="hsa-miR-19b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3,6-9], Northern [1,5]"
XX
SQ Sequence 96 BP; 27 A; 14 C; 19 G; 0 T; 36 other;
acauugcuac uuacaauuag uuuugcaggu uugcauuuca gcguauauau guauaugugg 60
cugugcaaau ccaugcaaaa cugauuguga uaaugu 96
//
ID hsa-mir-20a standard; RNA; HSA; 71 BP.
XX
AC MI0000076;
XX
DE Homo sapiens miR-20a stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [5]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 31577; MIR20A.
DR ENTREZGENE; 406982; MIR20A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0000075"
FT /product="hsa-miR-20a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,4-7], Northern [1]"
FT miRNA 44..65
FT /accession="MIMAT0004493"
FT /product="hsa-miR-20a-3p"
FT /evidence=experimental
FT /experiment="cloned [6]"
XX
SQ Sequence 71 BP; 20 A; 11 C; 16 G; 0 T; 24 other;
guagcacuaa agugcuuaua gugcagguag uguuuaguua ucuacugcau uaugagcacu 60
uaaaguacug c 71
//
ID hsa-mir-21 standard; RNA; HSA; 72 BP.
XX
AC MI0000077;
XX
DE Homo sapiens miR-21 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [4]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [5]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [6]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [7]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [8]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [9]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [10]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-21; hsa-miR-21.
DR HGNC; 31586; MIR21.
DR ENTREZGENE; 406991; MIR21.
XX
CC Mourelatos et al. named this sequence miR-21 precursor-17 and also
CC reported the exact reverse complement of this predicted stem-loop sequence
CC and erroneously assigned the name miR-104 [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0000076"
FT /product="hsa-miR-21-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3,6-9], Northern [1,5], Illumina
FT [10]"
FT miRNA 46..66
FT /accession="MIMAT0004494"
FT /product="hsa-miR-21-3p"
FT /evidence=experimental
FT /experiment="cloned [8-9]"
XX
SQ Sequence 72 BP; 16 A; 15 C; 20 G; 0 T; 21 other;
ugucggguag cuuaucagac ugauguugac uguugaaucu cauggcaaca ccagucgaug 60
ggcugucuga ca 72
//
ID hsa-mir-22 standard; RNA; HSA; 85 BP.
XX
AC MI0000078;
XX
DE Homo sapiens miR-22 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [6]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-22; hsa-miR-22.
DR HGNC; 31599; MIR22.
DR ENTREZGENE; 407004; MIR22.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0004495"
FT /product="hsa-miR-22-5p"
FT /evidence=experimental
FT /experiment="cloned [4]"
FT miRNA 53..74
FT /accession="MIMAT0000077"
FT /product="hsa-miR-22-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Northern [1], Illumina [6]"
XX
SQ Sequence 85 BP; 17 A; 24 C; 22 G; 0 T; 22 other;
ggcugagccg caguaguucu ucaguggcaa gcuuuauguc cugacccagc uaaagcugcc 60
aguugaagaa cuguugcccu cugcc 85
//
ID hsa-mir-23a standard; RNA; HSA; 73 BP.
XX
AC MI0000079;
XX
DE Homo sapiens miR-23a stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 12808467.
RA Kawasaki H, Taira K;
RT "Hes1 is a target of microRNA-23 during retinoic-acid-induced neuronal
RT differentiation of NT2 cells";
RL Nature. 423:838-842(2003).
RC Retraction: Nature 426:100(2003)
XX
RN [4]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [5]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-23a; hsa-miR-23a.
DR HGNC; 31605; MIR23A.
DR ENTREZGENE; 407010; MIR23A.
XX
CC This miRNA was previously named miR-23 [1,2] but is renamed here to avoid
CC confusion with the more recently described miR-23b (MIR:MI0000439).
CC Kawasaki and Taira reported that miR-23 regulates the transcriptional
CC repressor Hairy enhancer of split (HES1) [3]. This finding was later
CC retracted after the discovery that the regulated gene was human homolog of
CC ES1 (HES1), whose function is unknown.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0004496"
FT /product="hsa-miR-23a-5p"
FT /evidence=experimental
FT /experiment="cloned [6-7]"
FT miRNA 45..65
FT /accession="MIMAT0000078"
FT /product="hsa-miR-23a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4-7], Northern [1]"
XX
SQ Sequence 73 BP; 13 A; 20 C; 22 G; 0 T; 18 other;
ggccggcugg gguuccuggg gaugggauuu gcuuccuguc acaaaucaca uugccaggga 60
uuuccaaccg acc 73
//
ID hsa-mir-24-1 standard; RNA; HSA; 68 BP.
XX
AC MI0000080;
XX
DE Homo sapiens miR-24-1 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [4]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [5]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [6]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [7]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [8]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [9]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-189; hsa-miR-189.
DR TARGETS:PICTAR-VERT; hsa-miR-24; hsa-miR-24.
DR HGNC; 31607; MIR24-1.
DR ENTREZGENE; 407012; MIR24-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000079"
FT /product="hsa-miR-24-1-5p"
FT /evidence=experimental
FT /experiment="cloned [7]"
FT /similarity="MI0000231"
FT miRNA 44..65
FT /accession="MIMAT0000080"
FT /product="hsa-miR-24-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4,6-8], Northern [1], Illumina [9]"
XX
SQ Sequence 68 BP; 16 A; 18 C; 16 G; 0 T; 18 other;
cuccggugcc uacugagcug auaucaguuc ucauuuuaca cacuggcuca guucagcagg 60
aacaggag 68
//
ID hsa-mir-24-2 standard; RNA; HSA; 73 BP.
XX
AC MI0000081;
XX
DE Homo sapiens miR-24-2 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [4]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [5]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [8]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-24; hsa-miR-24.
DR HGNC; 31608; MIR24-2.
DR ENTREZGENE; 407013; MIR24-2.
XX
CC mir-24-2 was identified independently by two groups. This sequence was
CC named miR-24 precursor-19 in reference [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0004497"
FT /product="hsa-miR-24-2-5p"
FT /evidence=experimental
FT /experiment="cloned [6]"
FT miRNA 50..71
FT /accession="MIMAT0000080"
FT /product="hsa-miR-24-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4-7], Northern [1], Illumina [8]"
XX
SQ Sequence 73 BP; 15 A; 20 C; 20 G; 0 T; 18 other;
cucugccucc cgugccuacu gagcugaaac acaguugguu uguguacacu ggcucaguuc 60
agcaggaaca ggg 73
//
ID hsa-mir-25 standard; RNA; HSA; 84 BP.
XX
AC MI0000082;
XX
DE Homo sapiens miR-25 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-25; hsa-miR-25.
DR HGNC; 31609; MIR25.
DR ENTREZGENE; 407014; MIR25.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0004498"
FT /product="hsa-miR-25-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 52..73
FT /accession="MIMAT0000081"
FT /product="hsa-miR-25-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1]"
XX
SQ Sequence 84 BP; 12 A; 22 C; 31 G; 0 T; 19 other;
ggccaguguu gagaggcgga gacuugggca auugcuggac gcugcccugg gcauugcacu 60
ugucucgguc ugacagugcc ggcc 84
//
ID hsa-mir-26a-1 standard; RNA; HSA; 77 BP.
XX
AC MI0000083;
XX
DE Homo sapiens miR-26a-1 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [4]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [5]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-26a; hsa-miR-26a.
DR HGNC; 31610; MIR26A1.
DR ENTREZGENE; 407015; MIR26A1.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [6].
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0000082"
FT /product="hsa-miR-26a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,4-7], Northern [1,3]"
FT miRNA 49..70
FT /accession="MIMAT0004499"
FT /product="hsa-miR-26a-1-3p"
FT /evidence=experimental
FT /experiment="cloned [6]"
XX
SQ Sequence 77 BP; 14 A; 19 C; 24 G; 0 T; 20 other;
guggccucgu ucaaguaauc caggauaggc ugugcagguc ccaaugggcc uauucuuggu 60
uacuugcacg gggacgc 77
//
ID hsa-mir-26b standard; RNA; HSA; 77 BP.
XX
AC MI0000084;
XX
DE Homo sapiens miR-26b stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-26b; hsa-miR-26b.
DR HGNC; 31612; MIR26B.
DR ENTREZGENE; 407017; MIR26B.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0000083"
FT /product="hsa-miR-26b-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Northern [1]"
FT miRNA 47..67
FT /accession="MIMAT0004500"
FT /product="hsa-miR-26b-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 77 BP; 13 A; 20 C; 23 G; 0 T; 21 other;
ccgggaccca guucaaguaa uucaggauag guugugugcu guccagccug uucuccauua 60
cuuggcucgg ggaccgg 77
//
ID hsa-mir-27a standard; RNA; HSA; 78 BP.
XX
AC MI0000085;
XX
DE Homo sapiens miR-27a stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-27a; hsa-miR-27a.
DR HGNC; 31613; MIR27A.
DR ENTREZGENE; 407018; MIR27A.
XX
CC This miRNA was previously named miR-27 [1,2] but is renamed here to avoid
CC confusion with the more recently described miR-27b (MIR:MI0000440).
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0004501"
FT /product="hsa-miR-27a-5p"
FT /evidence=experimental
FT /experiment="cloned [4]"
FT miRNA 51..71
FT /accession="MIMAT0000084"
FT /product="hsa-miR-27a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Northern [1]"
XX
SQ Sequence 78 BP; 15 A; 23 C; 24 G; 0 T; 16 other;
cugaggagca gggcuuagcu gcuugugagc aggguccaca ccaagucgug uucacagugg 60
cuaaguuccg ccccccag 78
//
ID hsa-mir-28 standard; RNA; HSA; 86 BP.
XX
AC MI0000086;
XX
DE Homo sapiens miR-28 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [4]
RX PUBMED; 18230126.
RA Afanasyeva EA, Hotz-Wagenblatt A, Glatting KH, Westermann F;
RT "New miRNAs cloned from neuroblastoma";
RL BMC Genomics. 9:52(2008).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-28; hsa-miR-28.
DR HGNC; 31615; MIR28.
DR ENTREZGENE; 407020; MIR28.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000085"
FT /product="hsa-miR-28-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1]"
FT miRNA 54..75
FT /accession="MIMAT0004502"
FT /product="hsa-miR-28-3p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
XX
SQ Sequence 86 BP; 16 A; 24 C; 21 G; 0 T; 25 other;
gguccuugcc cucaaggagc ucacagucua uugaguuacc uuucugacuu ucccacuaga 60
uugugagcuc cuggagggca ggcacu 86
//
ID hsa-mir-29a standard; RNA; HSA; 64 BP.
XX
AC MI0000087;
XX
DE Homo sapiens miR-29a stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [5]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [8]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR RFAM; RF00074; mir-29.
DR TARGETS:PICTAR-VERT; hsa-miR-29a; hsa-miR-29a.
DR HGNC; 31616; MIR29A.
DR ENTREZGENE; 407021; MIR29A.
XX
CC miR-29a was previously know as miR-29 here and in [1]. The mature
CC sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [6].
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0004503"
FT /product="hsa-miR-29a-5p"
FT /evidence=experimental
FT /experiment="cloned [6]"
FT miRNA 42..63
FT /accession="MIMAT0000086"
FT /product="hsa-miR-29a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3,5-7], Northern [1,4], Illumina
FT [8]"
XX
SQ Sequence 64 BP; 17 A; 10 C; 11 G; 0 T; 26 other;
augacugauu ucuuuuggug uucagaguca auauaauuuu cuagcaccau cugaaaucgg 60
uuau 64
//
ID hsa-mir-30a standard; RNA; HSA; 71 BP.
XX
AC MI0000088;
XX
DE Homo sapiens miR-30a stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [4]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-30a-3p; hsa-miR-30a-3p.
DR TARGETS:PICTAR-VERT; hsa-miR-30a-5p; hsa-miR-30a-5p.
DR HGNC; 31624; MIR30A.
DR ENTREZGENE; 407029; MIR30A.
XX
CC The mature sequences miR-30 [1] and miR-97 [2] appear to originate from
CC the same precursor. Subsequent data confirm that both arms of the
CC precursor appear to give rise to mature miRNA sequences (Pfeffer S, pers.
CC comm.). Landgraf et al. later showed that the 5' product is the
CC predominant one [5]. Related miRNAs are processed from the 5' arms of
CC other precursor loci (mir-30b, MIR:MI0000441; mir-30c-1, MIR:MI0000736;
CC mir-30c-2, MIR:MI0000254; mir-30d, MIR:MI0000255; mir-30e, MI0000749).
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000087"
FT /product="hsa-miR-30a-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4-6]"
FT miRNA 47..68
FT /accession="MIMAT0000088"
FT /product="hsa-miR-30a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4-5], Northern [1]"
XX
SQ Sequence 71 BP; 16 A; 17 C; 21 G; 0 T; 17 other;
gcgacuguaa acauccucga cuggaagcug ugaagccaca gaugggcuuu cagucggaug 60
uuugcagcug c 71
//
ID hsa-mir-31 standard; RNA; HSA; 71 BP.
XX
AC MI0000089;
XX
DE Homo sapiens miR-31 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-31; hsa-miR-31.
DR HGNC; 31630; MIR31.
DR ENTREZGENE; 407035; MIR31.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..28
FT /accession="MIMAT0000089"
FT /product="hsa-miR-31-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1]"
FT miRNA 44..65
FT /accession="MIMAT0004504"
FT /product="hsa-miR-31-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 71 BP; 18 A; 16 C; 20 G; 0 T; 17 other;
ggagaggagg caagaugcug gcauagcugu ugaacuggga accugcuaug ccaacauauu 60
gccaucuuuc c 71
//
ID hsa-mir-32 standard; RNA; HSA; 70 BP.
XX
AC MI0000090;
XX
DE Homo sapiens miR-32 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-32; hsa-miR-32.
DR HGNC; 31631; MIR32.
DR ENTREZGENE; 407036; MIR32.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000090"
FT /product="hsa-miR-32-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
FT miRNA 47..68
FT /accession="MIMAT0004505"
FT /product="hsa-miR-32-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 70 BP; 17 A; 11 C; 16 G; 0 T; 26 other;
ggagauauug cacauuacua aguugcaugu ugucacggcc ucaaugcaau uuagugugug 60
ugauauuuuc 70
//
ID hsa-mir-33a standard; RNA; HSA; 69 BP.
XX
AC MI0000091;
XX
DE Homo sapiens miR-33a stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-33; hsa-miR-33.
DR HGNC; 31634; MIR33A.
DR ENTREZGENE; 407039; MIR33A.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0000091"
FT /product="hsa-miR-33a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
FT miRNA 46..67
FT /accession="MIMAT0004506"
FT /product="hsa-miR-33a-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 69 BP; 13 A; 15 C; 18 G; 0 T; 23 other;
cuguggugca uuguaguugc auugcauguu cuggugguac ccaugcaaug uuuccacagu 60
gcaucacag 69
//
ID hsa-mir-92a-1 standard; RNA; HSA; 78 BP.
XX
AC MI0000093;
XX
DE Homo sapiens miR-92a-1 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [5]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [6]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [7]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [8]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-92; hsa-miR-92.
DR HGNC; 31643; MIR92A1.
DR ENTREZGENE; 407048; MIR92A1.
XX
CC Human miR-92a (previously named miR-92 here) has two predicted hairpin
CC precursor sequences: mir-92a-1 (MIR:MI0000093) on chromosome 13 (named
CC mir-92-13 in [1]) and mir-92a-2 (MIR:MI0000094) on chromosome X (named
CC mir-92-X in [1]). miR-92a has also been cloned from mouse embryonic stem
CC cells [2] and is predicted to be expressed from two closely related
CC precursor hairpins (MIR:MI0000719 and MIR:MI0000580). The mature sequence
CC shown here represents the most commonly cloned form from large-scale
CC cloning studies [7].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0004507"
FT /product="hsa-miR-92a-1-5p"
FT /evidence=experimental
FT /experiment="cloned [7-8]"
FT miRNA 48..69
FT /accession="MIMAT0000092"
FT /product="hsa-miR-92a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3,5-8], Northern [4]"
XX
SQ Sequence 78 BP; 10 A; 15 C; 23 G; 0 T; 30 other;
cuuucuacac agguugggau cgguugcaau gcuguguuuc uguaugguau ugcacuuguc 60
ccggccuguu gaguuugg 78
//
ID hsa-mir-92a-2 standard; RNA; HSA; 75 BP.
XX
AC MI0000094;
XX
DE Homo sapiens miR-92a-2 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [5]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [6]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [7]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [8]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-92; hsa-miR-92.
DR HGNC; 31644; MIR92A2.
DR ENTREZGENE; 407049; MIR92A2.
XX
CC Human miR-92a (previously named miR-92 here) has two predicted hairpin
CC precursor sequences: mir-92a-1 (MIR:MI0000093) on chromosome 13 (named
CC mir-92-13 in [1]) and mir-92a-2 (MIR:MI0000094) on chromosome X (named
CC mir-92-X in [1]). miR-92a has also been cloned from mouse embryonic stem
CC cells [2] and is predicted to be expressed from two closely related
CC precursor hairpins (MIR:MI0000719 and MIR:MI0000580). The mature sequence
CC shown here represents the most commonly cloned form from large-scale
CC cloning studies [7].
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0004508"
FT /product="hsa-miR-92a-2-5p"
FT /evidence=experimental
FT /experiment="cloned [7]"
FT miRNA 48..69
FT /accession="MIMAT0000092"
FT /product="hsa-miR-92a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3,5-8], Northern [4]"
XX
SQ Sequence 75 BP; 14 A; 14 C; 20 G; 0 T; 27 other;
ucaucccugg guggggauuu guugcauuac uuguguucua uauaaaguau ugcacuuguc 60
ccggccugug gaaga 75
//
ID hsa-mir-93 standard; RNA; HSA; 80 BP.
XX
AC MI0000095;
XX
DE Homo sapiens miR-93 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [3]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [4]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-93; hsa-miR-93.
DR HGNC; 31645; MIR93.
DR ENTREZGENE; 407050; MIR93.
XX
CC Mourelatos et al. identified two copies of this sequence mapping to
CC chromosome 7, and assigned the names mir-93-7.1 and mir-93-7.2 [1].
CC Subsequent genome assemblies suggest the presence of only one miR-93 locus
CC on chromosome 7. The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [5]. The 5' end of
CC the miRNA may be offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0000093"
FT /product="hsa-miR-93-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-6], Northern [4]"
FT miRNA 50..71
FT /accession="MIMAT0004509"
FT /product="hsa-miR-93-3p"
FT /evidence=experimental
FT /experiment="cloned [5]"
XX
SQ Sequence 80 BP; 14 A; 25 C; 23 G; 0 T; 18 other;
cugggggcuc caaagugcug uucgugcagg uagugugauu acccaaccua cugcugagcu 60
agcacuuccc gagcccccgg 80
//
ID hsa-mir-95 standard; RNA; HSA; 81 BP.
XX
AC MI0000097;
XX
DE Homo sapiens miR-95 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-95; hsa-miR-95.
DR HGNC; 31647; MIR95.
DR ENTREZGENE; 407052; MIR95.
XX
CC This sequence is localised to chromosome 4 and was named mir-95-4 in
CC reference [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0026473"
FT /product="hsa-miR-95-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 49..70
FT /accession="MIMAT0000094"
FT /product="hsa-miR-95-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3]"
XX
SQ Sequence 81 BP; 24 A; 16 C; 17 G; 0 T; 24 other;
aacacagugg gcacucaaua aaugucuguu gaauugaaau gcguuacauu caacggguau 60
uuauugagca cccacucugu g 81
//
ID hsa-mir-96 standard; RNA; HSA; 78 BP.
XX
AC MI0000098;
XX
DE Homo sapiens miR-96 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-96; hsa-miR-96.
DR HGNC; 31648; MIR96.
DR ENTREZGENE; 407053; MIR96.
XX
CC This sequence is localised to chromosome 7 and was named mir-96-7 in
CC reference [1]. The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0000095"
FT /product="hsa-miR-96-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
FT miRNA 52..73
FT /accession="MIMAT0004510"
FT /product="hsa-miR-96-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 78 BP; 16 A; 18 C; 19 G; 0 T; 25 other;
uggccgauuu uggcacuagc acauuuuugc uugugucucu ccgcucugag caaucaugug 60
cagugccaau augggaaa 78
//
ID hsa-mir-98 standard; RNA; HSA; 119 BP.
XX
AC MI0000100;
XX
DE Homo sapiens miR-98 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [4]
RX PUBMED; 22282338.
RA Voellenkle C, Rooij Jv, Guffanti A, Brini E, Fasanaro P, Isaia E, Croft L,
RA David M, Capogrossi MC, Moles A, Felsani A, Martelli F;
RT "Deep-sequencing of endothelial cells exposed to hypoxia reveals the
RT complexity of known and novel microRNAs";
RL RNA. 18:472-484(2012).
XX
DR RFAM; RF00027; let-7.
DR TARGETS:PICTAR-VERT; hsa-miR-98; hsa-miR-98.
DR HGNC; 31649; MIR98.
DR ENTREZGENE; 407054; MIR98.
XX
CC This sequence is localised to chromosome X and was named mir-98-X in
CC reference [1]. The predicted stem-loop precursor sequence is clearly
CC related to let-7.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0000096"
FT /product="hsa-miR-98-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT miRNA 80..101
FT /accession="MIMAT0022842"
FT /product="hsa-miR-98-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 119 BP; 30 A; 19 C; 32 G; 0 T; 38 other;
aggauucugc ucaugccagg gugagguagu aaguuguauu guuguggggu agggauauua 60
ggccccaauu agaagauaac uauacaacuu acuacuuucc cuggugugug gcauauuca 119
//
ID hsa-mir-99a standard; RNA; HSA; 81 BP.
XX
AC MI0000101;
XX
DE Homo sapiens miR-99a stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR RFAM; RF00104; mir-10.
DR TARGETS:PICTAR-VERT; hsa-miR-99a; hsa-miR-99a.
DR HGNC; 31650; MIR99A.
DR ENTREZGENE; 407055; MIR99A.
XX
CC This sequence is localised to chromosome 21 and was named mir-99-21 in
CC reference [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0000097"
FT /product="hsa-miR-99a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
FT miRNA 50..71
FT /accession="MIMAT0004511"
FT /product="hsa-miR-99a-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 81 BP; 16 A; 20 C; 23 G; 0 T; 22 other;
cccauuggca uaaacccgua gauccgaucu uguggugaag uggaccgcac aagcucgcuu 60
cuaugggucu gugucagugu g 81
//
ID hsa-mir-100 standard; RNA; HSA; 80 BP.
XX
AC MI0000102;
XX
DE Homo sapiens miR-100 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [4]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR RFAM; RF00104; mir-10.
DR TARGETS:PICTAR-VERT; hsa-miR-100; hsa-miR-100.
DR HGNC; 31487; MIR100.
DR ENTREZGENE; 406892; MIR100.
XX
CC This sequence is localised to chromosome 11 and was named mir-100-11 in
CC reference [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0000098"
FT /product="hsa-miR-100-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4]"
FT miRNA 48..69
FT /accession="MIMAT0004512"
FT /product="hsa-miR-100-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 80 BP; 18 A; 18 C; 19 G; 0 T; 25 other;
ccuguugcca caaacccgua gauccgaacu ugugguauua guccgcacaa gcuuguaucu 60
auagguaugu gucuguuagg 80
//
ID hsa-mir-101-1 standard; RNA; HSA; 75 BP.
XX
AC MI0000103;
XX
DE Homo sapiens miR-101-1 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-101; hsa-miR-101.
DR HGNC; 31488; MIR101-1.
DR ENTREZGENE; 406893; MIR101-1.
XX
CC Reference [1] reports two miR-101 precursor hairpin structures in human,
CC on chromosome 1 (MIR:MI0000103) and 9 (MIR:MI0000739, named
CC mir-101-precursor-9 in [1]). The mature sequence shown here represents
CC the most commonly cloned form from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004513"
FT /product="hsa-miR-101-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT miRNA 47..67
FT /accession="MIMAT0000099"
FT /product="hsa-miR-101-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4]"
XX
SQ Sequence 75 BP; 19 A; 15 C; 19 G; 0 T; 22 other;
ugcccuggcu caguuaucac agugcugaug cugucuauuc uaaagguaca guacugugau 60
aacugaagga uggca 75
//
ID hsa-mir-29b-1 standard; RNA; HSA; 81 BP.
XX
AC MI0000105;
XX
DE Homo sapiens miR-29b-1 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR MIR; MI0000143; mmu-mir-29b-1.
DR RFAM; RF00074; mir-29.
DR TARGETS:PICTAR-VERT; hsa-miR-29b; hsa-miR-29b.
DR HGNC; 31619; MIR29B1.
DR ENTREZGENE; 407024; MIR29B1.
XX
CC Mourelatos et al. identified two copies of this sequence mapping to
CC chromosome 7, and assigned the names mir-102-7.1 and mir-102-7.2 [1].
CC Subsequent genome assemblies suggest the presence of only one miR-102
CC locus on chromosome 7. Human miR-102 is a homologue of mouse miR-29b
CC (MIR:MI0000143) and so has been renamed here for consistency.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..33
FT /accession="MIMAT0004514"
FT /product="hsa-miR-29b-1-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT miRNA 51..73
FT /accession="MIMAT0000100"
FT /product="hsa-miR-29b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [2]"
XX
SQ Sequence 81 BP; 19 A; 10 C; 22 G; 0 T; 30 other;
cuucaggaag cugguuucau auggugguuu agauuuaaau agugauuguc uagcaccauu 60
ugaaaucagu guucuugggg g 81
//
ID hsa-mir-29b-2 standard; RNA; HSA; 81 BP.
XX
AC MI0000107;
XX
DE Homo sapiens miR-29b-2 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR MIR; MI0000712; mmu-mir-29b-2.
DR RFAM; RF00074; mir-29.
DR TARGETS:PICTAR-VERT; hsa-miR-29b; hsa-miR-29b.
DR HGNC; 31620; MIR29B2.
DR ENTREZGENE; 407025; MIR29B2.
XX
CC This sequence was named mir-102-1 in reference [1]. Human miR-102 is a
CC homologue of mouse miR-29b (MIR:MI0000143) and so has been renamed here
CC for consistency.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004515"
FT /product="hsa-miR-29b-2-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 52..74
FT /accession="MIMAT0000100"
FT /product="hsa-miR-29b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [2]"
XX
SQ Sequence 81 BP; 17 A; 14 C; 18 G; 0 T; 32 other;
cuucuggaag cugguuucac augguggcuu agauuuuucc aucuuuguau cuagcaccau 60
uugaaaucag uguuuuagga g 81
//
ID hsa-mir-103a-2 standard; RNA; HSA; 78 BP.
XX
AC MI0000108;
XX
DE Homo sapiens miR-103a-2 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [5]
RX PUBMED; 19144710.
RA Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G;
RT "Identification of novel Epstein-Barr virus microRNA genes from
RT nasopharyngeal carcinomas";
RL J Virol. 83:3333-3341(2009).
XX
RN [6]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-103; hsa-miR-103.
DR HGNC; 31491; MIR103-2.
DR ENTREZGENE; 406896; MIR103A2.
XX
CC This sequence was localised to chromosome 20 and named mir-103-20 in
CC reference [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0009196"
FT /product="hsa-miR-103a-2-5p"
FT /evidence=experimental
FT /experiment="454 [5]"
FT miRNA 48..70
FT /accession="MIMAT0000101"
FT /product="hsa-miR-103a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [2], Illumina [6]"
XX
SQ Sequence 78 BP; 19 A; 17 C; 18 G; 0 T; 24 other;
uugugcuuuc agcuucuuua cagugcugcc uuguagcauu caggucaagc agcauuguac 60
agggcuauga aagaacca 78
//
ID hsa-mir-103a-1 standard; RNA; HSA; 78 BP.
XX
AC MI0000109;
XX
DE Homo sapiens miR-103a-1 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [5]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-103; hsa-miR-103.
DR HGNC; 31490; MIR103-1.
DR ENTREZGENE; 406895; MIR103A1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0037306"
FT /product="hsa-miR-103a-1-5p"
FT /evidence=not_experimental
FT miRNA 48..70
FT /accession="MIMAT0000101"
FT /product="hsa-miR-103a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [2], Illumina [5]"
XX
SQ Sequence 78 BP; 16 A; 18 C; 20 G; 0 T; 24 other;
uacugcccuc ggcuucuuua cagugcugcc uuguugcaua uggaucaagc agcauuguac 60
agggcuauga aggcauug 78
//
ID hsa-mir-105-1 standard; RNA; HSA; 81 BP.
XX
AC MI0000111;
XX
DE Homo sapiens miR-105-1 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-105; hsa-miR-105.
DR HGNC; 31492; MIR105-1.
DR ENTREZGENE; 406897; MIR105-1.
XX
CC Mourelatos et al. [1] reported two identical predicted stem loop sequences
CC located on chromosome X, which they named mir-105-X.1 and mir-105-X.2.
CC These sequences have been renamed mir-105-1 (MIR:MI0000111) and mir-105-2
CC (MIR:MI0000112) here. mir-105-2 differs slightly from that published in
CC [1] and deposited in EMBL (EMBL:AF480548). The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0000102"
FT /product="hsa-miR-105-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT miRNA 51..72
FT /accession="MIMAT0004516"
FT /product="hsa-miR-105-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 81 BP; 14 A; 19 C; 24 G; 0 T; 24 other;
ugugcaucgu ggucaaaugc ucagacuccu gugguggcug cucaugcacc acggauguuu 60
gagcaugugc uacggugucu a 81
//
ID hsa-mir-105-2 standard; RNA; HSA; 81 BP.
XX
AC MI0000112;
XX
DE Homo sapiens miR-105-2 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-105; hsa-miR-105.
DR HGNC; 31493; MIR105-2.
DR ENTREZGENE; 406898; MIR105-2.
XX
CC Mourelatos et al. [1] reported two identical predicted stem loop sequences
CC located on chromosome X, which they named mir-105-X.1 and mir-105-X.2.
CC These sequences have been renamed mir-105-1 (MIR:MI0000111) and mir-105-2
CC (MIR:MI0000112) here. mir-105-2 differs slightly from that published in
CC [1] and deposited in EMBL (EMBL:AF480548). The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0000102"
FT /product="hsa-miR-105-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT miRNA 51..72
FT /accession="MIMAT0004516"
FT /product="hsa-miR-105-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 81 BP; 14 A; 17 C; 24 G; 0 T; 26 other;
ugugcaucgu ggucaaaugc ucagacuccu gugguggcug cuuaugcacc acggauguuu 60
gagcaugugc uauggugucu a 81
//
ID hsa-mir-106a standard; RNA; HSA; 81 BP.
XX
AC MI0000113;
XX
DE Homo sapiens miR-106a stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR MIR; MI0000071; hsa-mir-17.
DR RFAM; RF00051; mir-17.
DR TARGETS:PICTAR-VERT; hsa-miR-106a; hsa-miR-106a.
DR HGNC; 31494; MIR106A.
DR ENTREZGENE; 406899; MIR106A.
XX
CC This miRNA was not cloned in reference [1], rather it was identified by
CC homology to miR-91 (MIR:MI0000071). This sequence is localised to
CC chromosome X and was named mir-106-X in [1]. Mouse and human miR-106a
CC (MIR:MI0000406 and MIR:MI0000113) differ at two positions but the
CC precursor sequences are clearly closely related. The sequences are also
CC related to mir-17 (MIR:MI0000071 and MIR:MI0000687). The mature sequence
CC shown here represents the most commonly cloned form from large-scale
CC cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0000103"
FT /product="hsa-miR-106a-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT miRNA 50..71
FT /accession="MIMAT0004517"
FT /product="hsa-miR-106a-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 81 BP; 21 A; 17 C; 17 G; 0 T; 26 other;
ccuuggccau guaaaagugc uuacagugca gguagcuuuu ugagaucuac ugcaauguaa 60
gcacuucuua cauuaccaug g 81
//
ID hsa-mir-107 standard; RNA; HSA; 81 BP.
XX
AC MI0000114;
XX
DE Homo sapiens miR-107 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR MIR; MI0000108; .
DR TARGETS:PICTAR-VERT; hsa-miR-107; hsa-miR-107.
DR HGNC; 31496; MIR107.
DR ENTREZGENE; 406901; MIR107.
XX
CC This miRNA was identified by homology to miR-103 [1], and later verified
CC by cloning in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..72
FT /accession="MIMAT0000104"
FT /product="hsa-miR-107"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 81 BP; 18 A; 19 C; 19 G; 0 T; 25 other;
cucucugcuu ucagcuucuu uacaguguug ccuuguggca uggaguucaa gcagcauugu 60
acagggcuau caaagcacag a 81
//
ID hsa-mir-16-2 standard; RNA; HSA; 81 BP.
XX
AC MI0000115;
XX
DE Homo sapiens miR-16-2 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [3]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [4]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [5]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [6]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [7]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [8]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-16; hsa-miR-16.
DR HGNC; 31546; MIR16-2.
DR ENTREZGENE; 406951; MIR16-2.
XX
CC This entry represents a second putative hairpin precursor sequence for
CC miR-16, located on chromosome 3 (see also MIR:MI0000070). The sequence
CC was previously named mir-16-3 here and in references [1] and [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0000069"
FT /product="hsa-miR-16-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4,6-8], Northern [3]"
FT miRNA 53..74
FT /accession="MIMAT0004518"
FT /product="hsa-miR-16-2-3p"
FT /evidence=experimental
FT /experiment="cloned [7]"
XX
SQ Sequence 81 BP; 25 A; 15 C; 15 G; 0 T; 26 other;
guuccacucu agcagcacgu aaauauuggc guagugaaau auauauuaaa caccaauauu 60
acugugcugc uuuaguguga c 81
//
ID dme-mir-1 standard; RNA; DME; 91 BP.
XX
AC MI0000116;
XX
DE Drosophila melanogaster miR-1 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR RFAM; RF00103; mir-1.
DR TARGETS:MIRTE; miR-1; miR-1.
DR TARGETS:PICTAR-FLY; dme-miR-1; dme-miR-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0020779"
FT /product="dme-miR-1-5p"
FT /evidence=not_experimental
FT miRNA 56..77
FT /accession="MIMAT0000105"
FT /product="dme-miR-1-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-2], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000116"
XX
SQ Sequence 91 BP; 27 A; 15 C; 21 G; 0 T; 28 other;
uucagccuuu gagaguucca ugcuuccuug cauucaauag uuauauucaa gcauauggaa 60
uguaaagaag uauggagcga aaucuggcga g 91
//
ID dme-mir-2a-1 standard; RNA; DME; 76 BP.
XX
AC MI0000117;
XX
DE Drosophila melanogaster miR-2a-1 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14691535.
RA Stark A, Brennecke J, Russell RB, Cohen SM;
RT "Identification of Drosophila MicroRNA targets";
RL PLoS Biol. 1:E60(2003).
XX
RN [3]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [4]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [5]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [6]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR RFAM; RF00047; mir-2.
DR TARGETS:MIRTE; miR-2a; miR-2a.
DR TARGETS:PICTAR-FLY; dme-miR-2a; dme-miR-2a.
XX
CC Stark et al. [2] have identified targets for miR-2 in Drosophila using
CC computational prediction followed by experimental validation. miR-2
CC regulates the proapoptotic genes reaper, grim and sickle, suggesting that
CC it may be involved in the control of apoptosis.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0020780"
FT /product="dme-miR-2a-1-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0000106"
FT /product="dme-miR-2a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4], Northern [1,3], 454 [5-6],
FT Illumina [6]"
FT /similarity="MI0000117"
XX
SQ Sequence 76 BP; 15 A; 18 C; 21 G; 0 T; 22 other;
gcugggcucu caaagugguu gugaaaugca uuuccgcuuu gcgcggcaua ucacagccag 60
cuuugaugag cuuagc 76
//
ID dme-mir-2a-2 standard; RNA; DME; 72 BP.
XX
AC MI0000118;
XX
DE Drosophila melanogaster miR-2a-2 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14691535.
RA Stark A, Brennecke J, Russell RB, Cohen SM;
RT "Identification of Drosophila MicroRNA targets";
RL PLoS Biol. 1:E60(2003).
XX
RN [3]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [4]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [5]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [6]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR RFAM; RF00047; mir-2.
DR TARGETS:PICTAR-FLY; dme-miR-2a; dme-miR-2a.
XX
CC Stark et al. [2] have identified targets for miR-2 in Drosophila using
CC computational prediction followed by experimental validation. miR-2
CC regulates the proapoptotic genes reaper, grim and sickle, suggesting that
CC it may be involved in the control of apoptosis.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..28
FT /accession="MIMAT0020781"
FT /product="dme-miR-2a-2-5p"
FT /evidence=not_experimental
FT miRNA 44..66
FT /accession="MIMAT0000106"
FT /product="dme-miR-2a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4], Northern [1,3], 454 [5-6],
FT Illumina [6]"
FT /similarity="MI0000118"
XX
SQ Sequence 72 BP; 21 A; 16 C; 16 G; 0 T; 19 other;
aucuaagccu caucaagugg uugugauaug gauacccaac gcauaucaca gccagcuuug 60
augagcuagg au 72
//
ID dme-mir-2b-1 standard; RNA; DME; 77 BP.
XX
AC MI0000119;
XX
DE Drosophila melanogaster miR-2b-1 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14691535.
RA Stark A, Brennecke J, Russell RB, Cohen SM;
RT "Identification of Drosophila MicroRNA targets";
RL PLoS Biol. 1:E60(2003).
XX
RN [3]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [4]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [5]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [6]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR RFAM; RF00047; mir-2.
DR TARGETS:MIRTE; miR-2b; miR-2b.
DR TARGETS:PICTAR-FLY; dme-miR-2b; dme-miR-2b.
XX
CC Stark et al. [2] have identified targets for miR-2 in Drosophila using
CC computational prediction followed by experimental validation. miR-2
CC regulates the proapoptotic genes reaper, grim and sickle, suggesting that
CC it may be involved in the control of apoptosis.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0020782"
FT /product="dme-miR-2b-1-5p"
FT /evidence=not_experimental
FT miRNA 48..70
FT /accession="MIMAT0000107"
FT /product="dme-miR-2b-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4], Northern [1,3], 454 [5-6],
FT Illumina [6]"
FT /similarity="MI0000119"
XX
SQ Sequence 77 BP; 20 A; 17 C; 18 G; 0 T; 22 other;
cuucaacugu cuucaaagug gcagugacau guugucaaca auauucauau cacagccagc 60
uuugaggagc guugcgg 77
//
ID dme-mir-2b-2 standard; RNA; DME; 83 BP.
XX
AC MI0000120;
XX
DE Drosophila melanogaster miR-2b-2 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14691535.
RA Stark A, Brennecke J, Russell RB, Cohen SM;
RT "Identification of Drosophila MicroRNA targets";
RL PLoS Biol. 1:E60(2003).
XX
RN [3]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [4]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [5]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [6]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR RFAM; RF00047; mir-2.
DR MIRTE; miR-2b; miR-2b.
DR TARGETS:PICTAR-FLY; dme-miR-2b; dme-miR-2b.
XX
CC Stark et al. [2] have identified targets for miR-2 in Drosophila using
CC computational prediction followed by experimental validation. miR-2
CC regulates the proapoptotic genes reaper, grim and sickle, suggesting that
CC it may be involved in the control of apoptosis.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0020783"
FT /product="dme-miR-2b-2-5p"
FT /evidence=not_experimental
FT miRNA 54..76
FT /accession="MIMAT0000107"
FT /product="dme-miR-2b-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4], Northern [1,3], 454 [5-6],
FT Illumina [6]"
FT /similarity="MI0000120"
XX
SQ Sequence 83 BP; 18 A; 16 C; 19 G; 0 T; 30 other;
uugugucauu cuucaaagug guugugaaau guuugccuuu uuaugccuau ucauaucaca 60
gccagcuuug aggagcgacg cga 83
//
ID dme-mir-3 standard; RNA; DME; 69 BP.
XX
AC MI0000121;
XX
DE Drosophila melanogaster miR-3 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-3; miR-3.
DR TARGETS:PICTAR-FLY; dme-miR-3; dme-miR-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0020784"
FT /product="dme-miR-3-5p"
FT /evidence=not_experimental
FT miRNA 43..64
FT /accession="MIMAT0000108"
FT /product="dme-miR-3-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-3], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000121"
XX
SQ Sequence 69 BP; 16 A; 15 C; 16 G; 0 T; 22 other;
gauccuggga ugcaucuugu gcaguuaugu uucaaucuca caucacuggg caaagugugu 60
cucaagauc 69
//
ID dme-mir-4 standard; RNA; DME; 81 BP.
XX
AC MI0000122;
XX
DE Drosophila melanogaster miR-4 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-4; miR-4.
DR TARGETS:PICTAR-FLY; dme-miR-4; dme-miR-4.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..37
FT /accession="MIMAT0020785"
FT /product="dme-miR-4-5p"
FT /evidence=not_experimental
FT miRNA 49..69
FT /accession="MIMAT0000109"
FT /product="dme-miR-4-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-3], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000122"
XX
SQ Sequence 81 BP; 17 A; 15 C; 19 G; 0 T; 30 other;
uugcaauuag uuucuuuggu cguccagccu uaggugauuu uuccggucau aaagcuagac 60
aaccauugaa guucguugug g 81
//
ID dme-mir-5 standard; RNA; DME; 69 BP.
XX
AC MI0000123;
XX
DE Drosophila melanogaster miR-5 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-5; miR-5.
DR TARGETS:PICTAR-FLY; dme-miR-5; dme-miR-5.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..27
FT /accession="MIMAT0000110"
FT /product="dme-miR-5-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-2], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000123"
FT miRNA 43..65
FT /accession="MIMAT0020786"
FT /product="dme-miR-5-3p"
FT /evidence=not_experimental
XX
SQ Sequence 69 BP; 20 A; 12 C; 13 G; 0 T; 24 other;
gcuaaaagga acgaucguug ugauaugagu uguuuccuaa cauaucacag ugauuuuccu 60
uuauaacgc 69
//
ID dme-mir-6-1 standard; RNA; DME; 82 BP.
XX
AC MI0000124;
XX
DE Drosophila melanogaster miR-6-1 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-6; miR-6.
DR TARGETS:PICTAR-FLY; dme-miR-6; dme-miR-6.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0020787"
FT /product="dme-miR-6-1-5p"
FT /evidence=not_experimental
FT miRNA 52..73
FT /accession="MIMAT0000111"
FT /product="dme-miR-6-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-2], 454 [4],
FT Illumina [5]"
XX
SQ Sequence 82 BP; 23 A; 11 C; 16 G; 0 T; 32 other;
uuuaauguag agggaauagu ugcugugcug uaaguuaaua uaccauaucu auaucacagu 60
ggcuguucuu uuuguaccua aa 82
//
ID dme-mir-6-2 standard; RNA; DME; 74 BP.
XX
AC MI0000125;
XX
DE Drosophila melanogaster miR-6-2 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:PICTAR-FLY; dme-miR-6; dme-miR-6.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0020788"
FT /product="dme-miR-6-2-5p"
FT /evidence=not_experimental
FT miRNA 48..69
FT /accession="MIMAT0000111"
FT /product="dme-miR-6-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-2], 454 [4],
FT Illumina [5]"
FT /similarity="MI0000125"
XX
SQ Sequence 74 BP; 20 A; 13 C; 14 G; 0 T; 27 other;
uaacccaagg gaacuucugc ugcugauaua uuauugaaaa acuacuauau cacaguggcu 60
guucuuuuug guug 74
//
ID dme-mir-6-3 standard; RNA; DME; 80 BP.
XX
AC MI0000126;
XX
DE Drosophila melanogaster miR-6-3 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:PICTAR-FLY; dme-miR-6; dme-miR-6.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0020789"
FT /product="dme-miR-6-3-5p"
FT /evidence=not_experimental
FT miRNA 53..74
FT /accession="MIMAT0000111"
FT /product="dme-miR-6-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-2], 454 [4],
FT Illumina [5]"
FT /similarity="MI0000126"
XX
SQ Sequence 80 BP; 22 A; 11 C; 18 G; 0 T; 29 other;
caaaaagaag ggaacgguug cugaugaugu aguuugaaac ucucacaauu uauaucacag 60
uggcuguucu uuuuuguuug 80
//
ID dme-mir-7 standard; RNA; DME; 88 BP.
XX
AC MI0000127;
XX
DE Drosophila melanogaster miR-7 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14691535.
RA Stark A, Brennecke J, Russell RB, Cohen SM;
RT "Identification of Drosophila MicroRNA targets";
RL PLoS Biol. 1:E60(2003).
XX
RN [3]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [4]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [5]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [6]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR RFAM; RF00053; mir-7.
DR TARGETS:MIRTE; miR-7; miR-7.
DR TARGETS:PICTAR-FLY; dme-miR-7; dme-miR-7.
DR ENTREZGENE; 3772237; mir-7.
XX
CC Stark et al. [2] have identified targets for miR-7 in Drosophila using
CC computational prediction followed by experimental validation. miR-7
CC regulates a family of Notch targets including the Enhancer of split and
CC Bearded complex genes Tom and m4, and the basic helix-loop-helix
CC transcriptional repressors HLHm3 and hairy.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0000112"
FT /product="dme-miR-7-5p"
FT /evidence=experimental
FT /experiment="cloned [1,4], Northern [1,3-4], 454 [5-6],
FT Illumina [6]"
FT /similarity="MI0000127"
FT miRNA 55..76
FT /accession="MIMAT0020790"
FT /product="dme-miR-7-3p"
FT /evidence=not_experimental
XX
SQ Sequence 88 BP; 19 A; 14 C; 20 G; 0 T; 35 other;
gagugcauuc cguauggaag acuagugauu uuguuguuug gucuuuggua auaacaauaa 60
aucccuuguc uucuuacggc gugcauuu 88
//
ID dme-mir-8 standard; RNA; DME; 87 BP.
XX
AC MI0000128;
XX
DE Drosophila melanogaster miR-8 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR ENTREZGENE; 3771764; mir-8.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0020791"
FT /product="dme-miR-8-5p"
FT /evidence=not_experimental
FT miRNA 53..75
FT /accession="MIMAT0000113"
FT /product="dme-miR-8-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-3], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000128"
XX
SQ Sequence 87 BP; 22 A; 20 C; 16 G; 0 T; 29 other;
aaggacaucu guucacaucu uaccgggcag cauuagaucc uuuuuauaac ucuaauacug 60
ucagguaaag augucguccg uguccuu 87
//
ID dme-mir-9a standard; RNA; DME; 78 BP.
XX
AC MI0000129;
XX
DE Drosophila melanogaster miR-9a stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-9a; miR-9a.
DR TARGETS:PICTAR-FLY; dme-miR-9a; dme-miR-9a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..32
FT /accession="MIMAT0000114"
FT /product="dme-miR-9a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-3], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000129"
FT miRNA 49..70
FT /accession="MIMAT0020792"
FT /product="dme-miR-9a-3p"
FT /evidence=not_experimental
XX
SQ Sequence 78 BP; 23 A; 11 C; 16 G; 0 T; 28 other;
gcuauguugu cuuugguuau cuagcuguau gagugauaaa uaacgucaua aagcuagcuu 60
accgaaguua auauuagc 78
//
ID dme-mir-10 standard; RNA; DME; 77 BP.
XX
AC MI0000130;
XX
DE Drosophila melanogaster miR-10 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR RFAM; RF00104; mir-10.
DR TARGETS:MIRTE; miR-10; miR-10.
DR TARGETS:PICTAR-FLY; dme-miR-10; dme-miR-10.
XX
CC The first cloning experiments identified the mature miR-10 from the 5' arm
CC of the D. melanogaster precursor [1,3]. High-throughput sequencing later
CC showed that the sequence from the 3' arm dominates [4-5].
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0000115"
FT /product="dme-miR-10-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-3], 454 [4-5],
FT Illumina [5]"
FT miRNA 49..71
FT /accession="MIMAT0012531"
FT /product="dme-miR-10-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-3], 454 [4-5],
FT Illumina [5]"
XX
SQ Sequence 77 BP; 18 A; 14 C; 18 G; 0 T; 27 other;
ccacgucuac ccuguagauc cgaauuuguu uuauacuagc uuuaaggaca aauucgguuc 60
uagagagguu ugugugg 77
//
ID dme-mir-11 standard; RNA; DME; 75 BP.
XX
AC MI0000131;
XX
DE Drosophila melanogaster miR-11 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-11; miR-11.
DR TARGETS:PICTAR-FLY; dme-miR-11; dme-miR-11.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0020793"
FT /product="dme-miR-11-5p"
FT /evidence=not_experimental
FT miRNA 48..68
FT /accession="MIMAT0000116"
FT /product="dme-miR-11-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-2], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000131"
XX
SQ Sequence 75 BP; 16 A; 20 C; 17 G; 0 T; 22 other;
gcacuuguca agaacuuucu cugugacccg cguguacuua aaagccgcau cacagucuga 60
guucuugcug agugc 75
//
ID dme-mir-12 standard; RNA; DME; 74 BP.
XX
AC MI0000132;
XX
DE Drosophila melanogaster miR-12 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-12; miR-12.
DR TARGETS:PICTAR-FLY; dme-miR-12; dme-miR-12.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0000117"
FT /product="dme-miR-12-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1-2], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000132"
FT miRNA 49..70
FT /accession="MIMAT0020794"
FT /product="dme-miR-12-3p"
FT /evidence=not_experimental
XX
SQ Sequence 74 BP; 20 A; 17 C; 15 G; 0 T; 22 other;
uacgguugag uauuacauca gguacuggug ugccuuaaau ccaacaacca guacuuaugu 60
cauacuacgc cgug 74
//
ID dme-mir-13a standard; RNA; DME; 75 BP.
XX
AC MI0000133;
XX
DE Drosophila melanogaster miR-13a stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR RFAM; RF00047; mir-2.
DR TARGETS:MIRTE; miR-13a; miR-13a.
DR TARGETS:PICTAR-FLY; dme-miR-13a; dme-miR-13a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0020795"
FT /product="dme-miR-13a-5p"
FT /evidence=not_experimental
FT miRNA 48..69
FT /accession="MIMAT0000118"
FT /product="dme-miR-13a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1-2], 454 [3-4],
FT Illumina [4]"
FT /similarity="MI0000133"
XX
SQ Sequence 75 BP; 20 A; 15 C; 14 G; 0 T; 26 other;
uacguaacuc cucaaagggu ugugaaaugu cgacuauuau cuacucauau cacagccauu 60
uugaugaguu ucgug 75
//
ID dme-mir-13b-1 standard; RNA; DME; 68 BP.
XX
AC MI0000134;
XX
DE Drosophila melanogaster miR-13b-1 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR RFAM; RF00047; mir-2.
DR TARGETS:MIRTE; miR-13b; miR-13b.
DR TARGETS:PICTAR-FLY; dme-miR-13b; dme-miR-13b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..30
FT /accession="MIMAT0020796"
FT /product="dme-miR-13b-1-5p"
FT /evidence=not_experimental
FT miRNA 43..64
FT /accession="MIMAT0000119"
FT /product="dme-miR-13b-3p"
FT /evidence=experimental
FT /experiment="Northern [1-2], cloned [3], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000134"
XX
SQ Sequence 68 BP; 19 A; 12 C; 12 G; 0 T; 25 other;
ccaugucguu aaaauguuug ugaacuuaug uauucacaau cauaucacag ccauuuugac 60
gaguuugg 68
//
ID dme-mir-13b-2 standard; RNA; DME; 70 BP.
XX
AC MI0000135;
XX
DE Drosophila melanogaster miR-13b-2 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR RFAM; RF00047; mir-2.
DR TARGETS:PICTAR-FLY; dme-miR-13b; dme-miR-13b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..31
FT /accession="MIMAT0020797"
FT /product="dme-miR-13b-2-5p"
FT /evidence=not_experimental
FT miRNA 46..67
FT /accession="MIMAT0000119"
FT /product="dme-miR-13b-3p"
FT /evidence=experimental
FT /experiment="Northern [1-2], cloned [3], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000135"
XX
SQ Sequence 70 BP; 19 A; 12 C; 15 G; 0 T; 24 other;
uauuaacgcg ucaaaaugac ugugagcuau guggauuuga cuucauauca cagccauuuu 60
gacgaguuug 70
//
ID dme-mir-14 standard; RNA; DME; 63 BP.
XX
AC MI0000136;
XX
DE Drosophila melanogaster miR-14 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 12725740.
RA Xu P, Vernooy SY, Guo M, Hay BA;
RT "The Drosophila microRNA Mir-14 suppresses cell death and is required for
RT normal fat metabolism";
RL Curr Biol. 13:790-795(2003).
XX
RN [3]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [4]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [5]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [6]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-14; miR-14.
DR TARGETS:PICTAR-FLY; dme-miR-14; dme-miR-14.
XX
CC miR-14 has been reported to act as a cell death repressor and regulator of
CC fat metabolism [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0020798"
FT /product="dme-miR-14-5p"
FT /evidence=not_experimental
FT miRNA 41..62
FT /accession="MIMAT0000120"
FT /product="dme-miR-14-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4], Northern [3], 454 [5-6],
FT Illumina [6]"
FT /similarity="MI0000136"
XX
SQ Sequence 63 BP; 13 A; 13 C; 15 G; 0 T; 22 other;
ugugggagcg agacggggac ucacugugcu uauuaaauag ucagucuuuu ucucucuccu 60
aua 63
//
ID mmu-let-7g standard; RNA; MMU; 88 BP.
XX
AC MI0000137;
XX
DE Mus musculus let-7g stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00027; let-7.
DR MGI; 2676800; Mirlet7g.
DR ENTREZGENE; 387249; Mirlet7g.
XX
CC The mature sequence reported in [1] has a 3' terminal A residue, which is
CC incompatible with the reported precursor sequence from [1] and in this
CC entry. The mature sequence shown here represents the most commonly cloned
CC form from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000121"
FT /product="mmu-let-7g-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
FT miRNA 63..84
FT /accession="MIMAT0004519"
FT /product="mmu-let-7g-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 88 BP; 21 A; 20 C; 26 G; 0 T; 21 other;
ccaggcugag guaguaguuu guacaguuug agggucuaug auaccacccg guacaggaga 60
uaacuguaca ggccacugcc uugccagg 88
//
ID mmu-let-7i standard; RNA; MMU; 85 BP.
XX
AC MI0000138;
XX
DE Mus musculus let-7i stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00027; let-7.
DR MGI; 2676802; Mirlet7i.
DR ENTREZGENE; 387251; Mirlet7i.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000122"
FT /product="mmu-let-7i-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
FT miRNA 62..83
FT /accession="MIMAT0004520"
FT /product="mmu-let-7i-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 85 BP; 13 A; 17 C; 29 G; 0 T; 26 other;
cuggcugagg uaguaguuug ugcuguuggu cggguuguga cauugcccgc uguggagaua 60
acugcgcaag cuacugccuu gcuag 85
//
ID mmu-mir-1a-1 standard; RNA; MMU; 77 BP.
XX
AC MI0000139;
XX
DE Mus musculus miR-1a-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00103; mir-1.
DR MGI; 2676869; Mir1-1.
DR ENTREZGENE; 387136; Mir1a-1.
XX
CC Lagos-Quintana et al. [1] reported the cloning of miR-1b, miR-1c and
CC miR-1d. The mature processed miR sequences are identical apart from the
CC 3' residues (A in mir-1b, C in mir-1c and UU in mir-1d). The 3' residues
CC of both miR-1b and miR-1c conflict with the predicted stem-loop precursor
CC sequence shown here and these sequences are not found in current
CC assemblies of human and mouse genomes. It is suggested that polyA
CC polymerase may add 1-3 nts to the 3' end of the mature transcript (Tom
CC Tuschl, pers. comm.). The common 21 nts of the 3 reported miR sequences
CC have been rationalised here and named miR-1. There are 2 pairs of
CC orthologous putative hairpin precursor structures named mir-1-1 (human
CC MIR:MI0000651, mouse MIR:MI0000139), and mir-1-2 (human MIR:MI0000437,
CC mouse MIR:MI0000652). The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..32
FT /accession="MIMAT0016979"
FT /product="mmu-miR-1a-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 49..70
FT /accession="MIMAT0000123"
FT /product="mmu-miR-1a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3]"
XX
SQ Sequence 77 BP; 23 A; 14 C; 16 G; 0 T; 24 other;
gcuugggaca cauacuucuu uauaugccca uaugaaccug cuaagcuaug gaauguaaag 60
aaguauguau uucaggc 77
//
ID mmu-mir-15b standard; RNA; MMU; 64 BP.
XX
AC MI0000140;
XX
DE Mus musculus miR-15b stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [5]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [8]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676842; Mir15b.
DR ENTREZGENE; 387175; Mir15b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0000124"
FT /product="mmu-miR-15b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4-6], Illumina [7-8]"
FT miRNA 42..63
FT /accession="MIMAT0004521"
FT /product="mmu-miR-15b-3p"
FT /evidence=experimental
FT /experiment="cloned [6], Illumina [7-8]"
XX
SQ Sequence 64 BP; 18 A; 14 C; 12 G; 0 T; 20 other;
cuguagcagc acaucauggu uuacauacua cagucaagau gcgaaucauu auuugcugcu 60
cuag 64
//
ID mmu-mir-23b standard; RNA; MMU; 74 BP.
XX
AC MI0000141;
XX
DE Mus musculus miR-23b stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676898; Mir23b.
DR ENTREZGENE; 387217; Mir23b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0016980"
FT /product="mmu-miR-23b-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 46..66
FT /accession="MIMAT0000125"
FT /product="mmu-miR-23b-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], Illumina [5-6]"
XX
SQ Sequence 74 BP; 17 A; 17 C; 19 G; 0 T; 21 other;
ggcugcuugg guuccuggca ugcugauuug ugacuugaga uuaaaaucac auugccaggg 60
auuaccacgc aacc 74
//
ID mmu-mir-27b standard; RNA; MMU; 73 BP.
XX
AC MI0000142;
XX
DE Mus musculus miR-27b stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676903; Mir27b.
DR ENTREZGENE; 387221; Mir27b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0004522"
FT /product="mmu-miR-27b-5p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
FT miRNA 49..69
FT /accession="MIMAT0000126"
FT /product="mmu-miR-27b-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Illumina [6-7]"
XX
SQ Sequence 73 BP; 14 A; 14 C; 21 G; 0 T; 24 other;
aggugcagag cuuagcugau uggugaacag ugauugguuu ccgcuuuguu cacaguggcu 60
aaguucugca ccu 73
//
ID mmu-mir-29b-1 standard; RNA; MMU; 71 BP.
XX
AC MI0000143;
XX
DE Mus musculus miR-29b-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00074; mir-29.
DR MGI; 2676905; Mir29b-1.
DR ENTREZGENE; 387223; Mir29b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0004523"
FT /product="mmu-miR-29b-1-5p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
FT miRNA 47..69
FT /accession="MIMAT0000127"
FT /product="mmu-miR-29b-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3,5], Illumina [6-7]"
XX
SQ Sequence 71 BP; 19 A; 8 C; 17 G; 0 T; 27 other;
aggaagcugg uuucauaugg ugguuuagau uuaaauagug auugucuagc accauuugaa 60
aucaguguuc u 71
//
ID mmu-mir-30a standard; RNA; MMU; 71 BP.
XX
AC MI0000144;
XX
DE Mus musculus miR-30a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676907; Mir30a.
DR ENTREZGENE; 387225; Mir30a.
XX
CC Landgraf et al. confirm that the 5' mature miRNA product is the
CC predominant one [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000128"
FT /product="mmu-miR-30a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4], Illumina [5-6]"
FT miRNA 47..68
FT /accession="MIMAT0000129"
FT /product="mmu-miR-30a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], Illumina [5-6]"
XX
SQ Sequence 71 BP; 17 A; 17 C; 20 G; 0 T; 17 other;
gcgacuguaa acauccucga cuggaagcug ugaagccaca aaugggcuuu cagucggaug 60
uuugcagcug c 71
//
ID mmu-mir-30b standard; RNA; MMU; 96 BP.
XX
AC MI0000145;
XX
DE Mus musculus miR-30b stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676908; Mir30b.
DR ENTREZGENE; 387226; Mir30b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0000130"
FT /product="mmu-miR-30b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 59..80
FT /accession="MIMAT0004524"
FT /product="mmu-miR-30b-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 96 BP; 22 A; 20 C; 23 G; 0 T; 31 other;
cuaagccaag uuucaguuca uguaaacauc cuacacucag cugucauaca ugcguuggcu 60
gggaugugga uguuuacguc agcugucuug gaguau 96
//
ID mmu-mir-99a standard; RNA; MMU; 65 BP.
XX
AC MI0000146;
XX
DE Mus musculus miR-99a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676912; Mir99a.
DR ENTREZGENE; 387229; Mir99a.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0000131"
FT /product="mmu-miR-99a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 42..62
FT /accession="MIMAT0016981"
FT /product="mmu-miR-99a-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 65 BP; 13 A; 15 C; 19 G; 0 T; 18 other;
cauaaacccg uagauccgau cuugugguga aguggaccgc gcaagcucgu uucuaugggu 60
cugug 65
//
ID mmu-mir-99b standard; RNA; MMU; 70 BP.
XX
AC MI0000147;
XX
DE Mus musculus miR-99b stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676913; Mir99b.
DR ENTREZGENE; 387230; Mir99b.
XX
CC Expression of this miRNA in mouse was independently verified in the brain
CC [1], embryonic stem cells [2] and testes [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000132"
FT /product="mmu-miR-99b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
FT miRNA 45..66
FT /accession="MIMAT0004525"
FT /product="mmu-miR-99b-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 70 BP; 10 A; 26 C; 21 G; 0 T; 13 other;
ggcacccacc cguagaaccg accuugcggg gccuucgccg cacacaagcu cgugucugug 60
gguccguguc 70
//
ID mmu-mir-101a standard; RNA; MMU; 83 BP.
XX
AC MI0000148;
XX
DE Mus musculus miR-101a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676803; Mir101a.
DR ENTREZGENE; 387143; Mir101a.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0004526"
FT /product="mmu-miR-101a-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT miRNA 51..71
FT /accession="MIMAT0000133"
FT /product="mmu-miR-101a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
XX
SQ Sequence 83 BP; 21 A; 19 C; 22 G; 0 T; 21 other;
aggcugcccu ggcucaguua ucacagugcu gaugcugucc auucuaaagg uacaguacug 60
ugauaacuga aggauggcag cca 83
//
ID mmu-mir-124-3 standard; RNA; MMU; 68 BP.
XX
AC MI0000150;
XX
DE Mus musculus miR-124-3 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618704; Mirn124a-3.
DR ENTREZGENE; 723951; Mir124a-3.
XX
CC miR-124 was cloned from mouse brain [1] and embryonic stem cells [2] by
CC independent groups. There are 3 predicted precursor hairpin sequences:
CC mir-124-1 (MIR:MI0000716) on chromosome 14, mir-124-2 (MIR:MI0000717) on
CC chromosome 3, and mir-124-3 (previously known as miR-124a here,
CC MIR:MI0000150) on chromosome 2. All have closely related predicted human
CC homologues (MIR:MI0000443, MIR:MI0000444 and MIR:MI0000445).
CC Lagos-Quintana et al. also report a mature miRNA sequence miR-124b, with a
CC G insertion at position 12 [1]. miR-124b is not found in either the mouse
CC or human genome assemblies.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0004527"
FT /product="mmu-miR-124-5p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
FT miRNA 44..63
FT /accession="MIMAT0000134"
FT /product="mmu-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
XX
SQ Sequence 68 BP; 18 A; 15 C; 17 G; 0 T; 18 other;
cucugcgugu ucacagcgga ccuugauuua augucuauac aauuaaggca cgcggugaau 60
gccaagag 68
//
ID mmu-mir-125a standard; RNA; MMU; 68 BP.
XX
AC MI0000151;
XX
DE Mus musculus miR-125a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676809; Mir125a.
DR ENTREZGENE; 387235; Mir125a.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..29
FT /accession="MIMAT0000135"
FT /product="mmu-miR-125a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 44..65
FT /accession="MIMAT0004528"
FT /product="mmu-miR-125a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 68 BP; 11 A; 17 C; 24 G; 0 T; 16 other;
cugggucccu gagacccuuu aaccugugag gacguccagg gucacaggug agguucuugg 60
gagccugg 68
//
ID mmu-mir-125b-2 standard; RNA; MMU; 71 BP.
XX
AC MI0000152;
XX
DE Mus musculus miR-125b-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00052; lin-4.
DR MGI; 3618706; Mir125b-2.
DR ENTREZGENE; 723952; Mir125b-2.
XX
CC Mouse miR-125b was cloned from mouse brain tissues in [1]. There are 2
CC predicted hairpin precursor structures in the mouse genome, each has a
CC closely related human homologue [2] (mir-125b-1, MIR:MI0000725;
CC mir-125b-2, MIR:MI0000152; the latter was previously named mir-125b here).
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000136"
FT /product="mmu-miR-125b-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], Illumina [5-6]"
FT miRNA 46..67
FT /accession="MIMAT0004529"
FT /product="mmu-miR-125b-2-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 71 BP; 17 A; 17 C; 17 G; 0 T; 20 other;
gccuaguccc ugagacccua acuugugagg uauuuuagua acaucacaag ucagguucuu 60
gggaccuagg c 71
//
ID mmu-mir-126a standard; RNA; MMU; 73 BP.
XX
AC MI0000153;
XX
DE Mus musculus miR-126a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676811; Mir126.
DR ENTREZGENE; 387145; Mir126.
XX
CC miR-123 identified in [1] was later found to originate from the same
CC precursor as miR-126 and was hence renamed miR-126-5p.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0000137"
FT /product="mmu-miR-126a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4], Illumina [5-6]"
FT miRNA 46..67
FT /accession="MIMAT0000138"
FT /product="mmu-miR-126a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], Illumina [5-6]"
XX
SQ Sequence 73 BP; 19 A; 17 C; 16 G; 0 T; 21 other;
ugacagcaca uuauuacuuu ugguacgcgc ugugacacuu caaacucgua ccgugaguaa 60
uaaugcgcgg uca 73
//
ID mmu-mir-127 standard; RNA; MMU; 70 BP.
XX
AC MI0000154;
XX
DE Mus musculus miR-127 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 15854907.
RA Davis E, Caiment F, Tordoir X, Cavaille J, Ferguson-Smith A, Cockett N,
RA Georges M, Charlier C;
RT "RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11
RT locus";
RL Curr Biol. 15:743-749(2005).
XX
RN [5]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [8]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676812; Mir127.
DR ENTREZGENE; 387146; Mir127.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [6].
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0004530"
FT /product="mmu-miR-127-5p"
FT /evidence=experimental
FT /experiment="cloned [6], Illumina [7-8]"
FT miRNA 43..64
FT /accession="MIMAT0000139"
FT /product="mmu-miR-127-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3,5-6], PCR [4], Illumina [7-8]"
XX
SQ Sequence 70 BP; 14 A; 18 C; 22 G; 0 T; 16 other;
ccagccugcu gaagcucaga gggcucugau ucagaaagau caucggaucc gucugagcuu 60
ggcuggucgg 70
//
ID mmu-mir-128-1 standard; RNA; MMU; 70 BP.
XX
AC MI0000155;
XX
DE Mus musculus miR-128-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676813; Mir128-1.
DR ENTREZGENE; 387147; Mir128-1.
XX
CC The most commonly cloned mature sequences derived from the previously
CC annotated mir-128a and mir-128b were shown by Landgraf et al to be
CC identical [3]. The sequences are therefore renamed mir-128-1 and
CC mir-128-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0016982"
FT /product="mmu-miR-128-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 44..64
FT /accession="MIMAT0000140"
FT /product="mmu-miR-128-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
XX
SQ Sequence 70 BP; 12 A; 16 C; 19 G; 0 T; 23 other;
guuggauucg gggccguagc acugucugag agguuuacau uucucacagu gaaccggucu 60
cuuuuucagc 70
//
ID mmu-mir-130a standard; RNA; MMU; 64 BP.
XX
AC MI0000156;
XX
DE Mus musculus miR-130a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [5]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [8]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676816; Mir130a.
DR ENTREZGENE; 387149; Mir130a.
XX
CC This sequence was named miR-130 in reference [1], but is renamed here to
CC avoid confusion with miR-130b (MIR:MI0000408).
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..24
FT /accession="MIMAT0016983"
FT /product="mmu-miR-130a-5p"
FT /evidence=experimental
FT /experiment="Illumina [8]"
FT miRNA 42..63
FT /accession="MIMAT0000141"
FT /product="mmu-miR-130a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4-6], Northern [2], Illumina [7]"
XX
SQ Sequence 64 BP; 16 A; 14 C; 15 G; 0 T; 19 other;
gagcucuuuu cacauugugc uacugucuaa cguguaccga gcagugcaau guuaaaaggg 60
cauc 64
//
ID mmu-mir-9-2 standard; RNA; MMU; 72 BP.
XX
AC MI0000157;
XX
DE Mus musculus miR-9-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619442; Mir9-2.
DR ENTREZGENE; 723967; Mir9-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0000142"
FT /product="mmu-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4], Illumina [5-6]"
FT miRNA 45..66
FT /accession="MIMAT0000143"
FT /product="mmu-miR-9-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4], Illumina [5-6]"
XX
SQ Sequence 72 BP; 22 A; 9 C; 15 G; 0 T; 26 other;
guuguuaucu uugguuaucu agcuguauga guguauuggu cuucauaaag cuagauaacc 60
gaaaguaaaa ac 72
//
ID mmu-mir-132 standard; RNA; MMU; 66 BP.
XX
AC MI0000158;
XX
DE Mus musculus miR-132 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676817; Mir132.
DR ENTREZGENE; 387150; Mir132.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0016984"
FT /product="mmu-miR-132-5p"
FT /evidence=experimental
FT /experiment="454 [4], Illumina [5]"
FT miRNA 42..63
FT /accession="MIMAT0000144"
FT /product="mmu-miR-132-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3,5]"
XX
SQ Sequence 66 BP; 13 A; 17 C; 21 G; 0 T; 15 other;
gggcaaccgu ggcuuucgau uguuacugug ggaaccggag guaacagucu acagccaugg 60
ucgccc 66
//
ID mmu-mir-133a-1 standard; RNA; MMU; 68 BP.
XX
AC MI0000159;
XX
DE Mus musculus miR-133a-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676818; Mir133a-1.
DR ENTREZGENE; 387151; Mir133a-1.
XX
CC This mature miRNA sequence was named miR-133 in reference [1], and renamed
CC miR-133a on subsequent identification of a homologue differing at the
CC terminal 3' position (MIR:MI0000821). The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [3]. The 5' end of the miRNA may be offset with respect to previous
CC annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..27
FT /accession="MIMAT0003473"
FT /product="mmu-miR-133a-5p"
FT /evidence=experimental
FT /experiment="MPSS [2], Illumina [4-5]"
FT miRNA 43..64
FT /accession="MIMAT0000145"
FT /product="mmu-miR-133a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Illumina [4-5]"
XX
SQ Sequence 68 BP; 19 A; 18 C; 14 G; 0 T; 17 other;
gcuaaagcug guaaaaugga accaaaucgc cucuucaaug gauuuggucc ccuucaacca 60
gcuguagc 68
//
ID mmu-mir-134 standard; RNA; MMU; 71 BP.
XX
AC MI0000160;
XX
DE Mus musculus miR-134 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676819; Mir134.
DR ENTREZGENE; 387152; Mir134.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000146"
FT /product="mmu-miR-134-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], PCR [2], Illumina [5,7]"
FT miRNA 46..65
FT /accession="MIMAT0016985"
FT /product="mmu-miR-134-3p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
XX
SQ Sequence 71 BP; 12 A; 21 C; 22 G; 0 T; 16 other;
agggugugug acugguugac cagaggggcg ugcacucugu ucacccugug ggccaccuag 60
ucaccaaccc u 71
//
ID mmu-mir-135a-1 standard; RNA; MMU; 90 BP.
XX
AC MI0000161;
XX
DE Mus musculus miR-135a-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676820; Mirn135a-1.
DR ENTREZGENE; 387153; Mir135a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0000147"
FT /product="mmu-miR-135a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Illumina [4-5]"
FT miRNA 56..77
FT /accession="MIMAT0004531"
FT /product="mmu-miR-135a-1-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 90 BP; 16 A; 18 C; 24 G; 0 T; 32 other;
aggccucacu guucucuaug gcuuuuuauu ccuaugugau ucuauugcuc gcucauauag 60
ggauuggagc cguggcguac ggugaggaua 90
//
ID mmu-mir-136 standard; RNA; MMU; 62 BP.
XX
AC MI0000162;
XX
DE Mus musculus miR-136 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15854907.
RA Davis E, Caiment F, Tordoir X, Cavaille J, Ferguson-Smith A, Cockett N,
RA Georges M, Charlier C;
RT "RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11
RT locus";
RL Curr Biol. 15:743-749(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676821; Mir136.
DR ENTREZGENE; 387154; Mir136.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0000148"
FT /product="mmu-miR-136-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4], PCR [3], Illumina [5-6]"
FT miRNA 40..61
FT /accession="MIMAT0004532"
FT /product="mmu-miR-136-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 62 BP; 14 A; 13 C; 12 G; 0 T; 23 other;
gaggacucca uuuguuuuga ugauggauuc uuaagcucca ucaucgucuc aaaugagucu 60
uc 62
//
ID mmu-mir-137 standard; RNA; MMU; 73 BP.
XX
AC MI0000163;
XX
DE Mus musculus miR-137 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676822; Mir137.
DR ENTREZGENE; 387155; Mir137.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0016986"
FT /product="mmu-miR-137-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 45..67
FT /accession="MIMAT0000149"
FT /product="mmu-miR-137-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
XX
SQ Sequence 73 BP; 16 A; 10 C; 23 G; 0 T; 24 other;
cuucggugac ggguauucuu ggguggauaa uacggauuac guuguuauug cuuaagaaua 60
cgcguagucg agg 73
//
ID mmu-mir-138-2 standard; RNA; MMU; 71 BP.
XX
AC MI0000164;
XX
DE Mus musculus miR-138-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [4]
RX PUBMED; 16738409.
RA Obernosterer G, Leuschner PJ, Alenius M, Martinez J;
RT "Post-transcriptional regulation of microRNA expression";
RL RNA. 12:1161-1167(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618733; Mir138-2.
DR ENTREZGENE; 723956; Mir138-2.
XX
CC Mouse miR-138 was cloned from mouse brain tissue in [1]. There are 2
CC predicted hairpin precursor structures in the mouse genome, each has a
CC closely related human homologue [2]. mir-138-1 (MIR:MI0000722) is found
CC on mouse chromosome 8, and mir-138-2 (MIR:MI0000164, previously named
CC mir-138 here) on chromosome 9. Kim et al. and Obernosterer et al.
CC independently show that the mature product is a 23mer [3,4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..24
FT /accession="MIMAT0000150"
FT /product="mmu-miR-138-5p"
FT /evidence=experimental
FT /experiment="cloned [1,5], Illumina [6-7]"
FT miRNA 49..69
FT /accession="MIMAT0016987"
FT /product="mmu-miR-138-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
XX
SQ Sequence 71 BP; 14 A; 21 C; 20 G; 0 T; 16 other;
cagcuggugu ugugaaucag gccgacgagc agcgcauccu cuuacccggc uauuucacga 60
caccaggguu g 71
//
ID mmu-mir-140 standard; RNA; MMU; 70 BP.
XX
AC MI0000165;
XX
DE Mus musculus miR-140 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676825; Mir140.
DR ENTREZGENE; 387158; Mir140.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000151"
FT /product="mmu-miR-140-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
FT miRNA 45..65
FT /accession="MIMAT0000152"
FT /product="mmu-miR-140-3p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [5-6]"
XX
SQ Sequence 70 BP; 15 A; 18 C; 19 G; 0 T; 18 other;
ccugccagug guuuuacccu augguagguu acgucaugcu guucuaccac aggguagaac 60
cacggacagg 70
//
ID mmu-mir-141 standard; RNA; MMU; 72 BP.
XX
AC MI0000166;
XX
DE Mus musculus miR-141 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676826; Mir141.
DR ENTREZGENE; 387159; Mir141.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0004533"
FT /product="mmu-miR-141-5p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
FT miRNA 48..69
FT /accession="MIMAT0000153"
FT /product="mmu-miR-141-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], Illumina [5-6]"
XX
SQ Sequence 72 BP; 16 A; 15 C; 21 G; 0 T; 20 other;
ggguccaucu uccagugcag uguuggaugg uugaaguaug aagcuccuaa cacugucugg 60
uaaagauggc cc 72
//
ID mmu-mir-142a standard; RNA; MMU; 64 BP.
XX
AC MI0000167;
XX
DE Mus musculus miR-142 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676827; Mir142.
DR ENTREZGENE; 387160; Mir142.
XX
CC Expression of miRNAs from both 5' and 3' arms of this precursor have been
CC independently verified in the mouse gut tissue [1] and in embryonic stem
CC cells [2]. The mature sequence shown here represents the most commonly
CC cloned form from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..24
FT /accession="MIMAT0000154"
FT /product="mmu-miR-142a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 40..62
FT /accession="MIMAT0000155"
FT /product="mmu-miR-142a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
XX
SQ Sequence 64 BP; 20 A; 12 C; 15 G; 0 T; 17 other;
acccauaaag uagaaagcac uacuaacagc acuggagggu guaguguuuc cuacuuuaug 60
gaug 64
//
ID mmu-mir-144 standard; RNA; MMU; 66 BP.
XX
AC MI0000168;
XX
DE Mus musculus miR-144 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676829; Mir144.
DR ENTREZGENE; 387162; Mir144.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0016988"
FT /product="mmu-miR-144-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 43..62
FT /accession="MIMAT0000156"
FT /product="mmu-miR-144-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 66 BP; 20 A; 9 C; 16 G; 0 T; 21 other;
ggcugggaua ucaucauaua cuguaaguuu gugaugagac acuacaguau agaugaugua 60
cuaguc 66
//
ID mmu-mir-145a standard; RNA; MMU; 70 BP.
XX
AC MI0000169;
XX
DE Mus musculus miR-145 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676830; Mir145.
DR ENTREZGENE; 387163; Mir145.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0000157"
FT /product="mmu-miR-145a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 47..68
FT /accession="MIMAT0004534"
FT /product="mmu-miR-145a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 70 BP; 15 A; 16 C; 18 G; 0 T; 21 other;
cucacggucc aguuuuccca ggaaucccuu ggaugcuaag auggggauuc cuggaaauac 60
uguucuugag 70
//
ID mmu-mir-146a standard; RNA; MMU; 65 BP.
XX
AC MI0000170;
XX
DE Mus musculus miR-146a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676831; Mirn146.
DR ENTREZGENE; 387164; Mir146.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000158"
FT /product="mmu-miR-146a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 42..63
FT /accession="MIMAT0016989"
FT /product="mmu-miR-146a-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 65 BP; 18 A; 13 C; 13 G; 0 T; 21 other;
agcucugaga acugaauucc auggguuaua ucaaugucag accugugaaa uucaguucuu 60
cagcu 65
//
ID mmu-mir-149 standard; RNA; MMU; 66 BP.
XX
AC MI0000171;
XX
DE Mus musculus miR-149 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676834; Mir149.
DR ENTREZGENE; 387167; Mir149.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..26
FT /accession="MIMAT0000159"
FT /product="mmu-miR-149-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 44..65
FT /accession="MIMAT0016990"
FT /product="mmu-miR-149-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 66 BP; 6 A; 16 C; 29 G; 0 T; 15 other;
ggcucuggcu ccgugucuuc acucccgugu uuguccgagg agggagggag ggacgggggc 60
ggugcu 66
//
ID mmu-mir-150 standard; RNA; MMU; 65 BP.
XX
AC MI0000172;
XX
DE Mus musculus miR-150 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676835; Mir150.
DR ENTREZGENE; 387168; Mir150.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000160"
FT /product="mmu-miR-150-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 42..63
FT /accession="MIMAT0004535"
FT /product="mmu-miR-150-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 65 BP; 10 A; 22 C; 19 G; 0 T; 14 other;
cccugucucc caacccuugu accagugcug ugccucagac ccugguacag gccuggggga 60
uaggg 65
//
ID mmu-mir-151 standard; RNA; MMU; 68 BP.
XX
AC MI0000173;
XX
DE Mus musculus miR-151 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676836; Mir151.
DR ENTREZGENE; 387169; Mir151.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..28
FT /accession="MIMAT0004536"
FT /product="mmu-miR-151-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 43..63
FT /accession="MIMAT0000161"
FT /product="mmu-miR-151-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 68 BP; 13 A; 22 C; 17 G; 0 T; 16 other;
ccugcccucg aggagcucac agucuaguau gucuccuccc uacuagacug aggcuccuug 60
aggacagg 68
//
ID mmu-mir-152 standard; RNA; MMU; 73 BP.
XX
AC MI0000174;
XX
DE Mus musculus miR-152 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676837; Mir152.
DR ENTREZGENE; 387170; Mir152.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..31
FT /accession="MIMAT0016991"
FT /product="mmu-miR-152-5p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
FT miRNA 47..67
FT /accession="MIMAT0000162"
FT /product="mmu-miR-152-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5,7]"
XX
SQ Sequence 73 BP; 13 A; 21 C; 24 G; 0 T; 15 other;
ccgggccuag guucugugau acacuccgac ucgggcucug gagcagucag ugcaugacag 60
aacuugggcc cgg 73
//
ID mmu-mir-153 standard; RNA; MMU; 69 BP.
XX
AC MI0000175;
XX
DE Mus musculus miR-153 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676838; Mir153.
DR ENTREZGENE; 387171; Mir153.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..27
FT /accession="MIMAT0016992"
FT /product="mmu-miR-153-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 44..65
FT /accession="MIMAT0000163"
FT /product="mmu-miR-153-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
XX
SQ Sequence 69 BP; 18 A; 12 C; 17 G; 0 T; 22 other;
cggugucauu uuugugacgu ugcagcuagu aauaugagcc caguugcaua gucacaaaag 60
ugaucauug 69
//
ID mmu-mir-154 standard; RNA; MMU; 66 BP.
XX
AC MI0000176;
XX
DE Mus musculus miR-154 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676839; Mir154.
DR ENTREZGENE; 387172; Mir154.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000164"
FT /product="mmu-miR-154-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], PCR [2], Illumina [5-6]"
FT miRNA 42..63
FT /accession="MIMAT0004537"
FT /product="mmu-miR-154-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 66 BP; 14 A; 13 C; 14 G; 0 T; 25 other;
gaagauaggu uauccguguu gccuucgcuu uauucgugac gaaucauaca cgguugaccu 60
auuuuu 66
//
ID mmu-mir-155 standard; RNA; MMU; 65 BP.
XX
AC MI0000177;
XX
DE Mus musculus miR-155 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676840; Mir155.
DR ENTREZGENE; 387173; Mir155.
XX
CC Mouse mir-155 resides in the non-coding BIC transcript (EMBL:AY096003),
CC located on chromosome 16 [2]. The mature sequence shown here represents
CC the most commonly cloned form from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..26
FT /accession="MIMAT0000165"
FT /product="mmu-miR-155-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Illumina [5]"
FT miRNA 43..63
FT /accession="MIMAT0016993"
FT /product="mmu-miR-155-3p"
FT /evidence=experimental
FT /experiment="454 [4], Illumina [5]"
XX
SQ Sequence 65 BP; 14 A; 13 C; 15 G; 0 T; 23 other;
cuguuaaugc uaauugugau agggguuuug gccucugacu gacuccuacc uguuagcauu 60
aacag 65
//
ID ath-MIR156a standard; RNA; ATH; 123 BP.
XX
AC MI0000178;
XX
DE Arabidopsis thaliana miR156a stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR RFAM; RF00073; mir-156.
DR ASRP; ASRP1423; miR156.
XX
CC MIR156a is thought to target 10 mRNAs coding for proteins containing the
CC Squamosa-promoter Binding Protein (SBP) box [1]. The complementary sites
CC are downstream of this conserved domain, within a poorly conserved
CC protein-coding context or the 3' UTR [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..40
FT /accession="MIMAT0000166"
FT /product="ath-miR156a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 5'RACE [3], 454
FT [4-5], MPSS [4], Illumina [6]"
FT miRNA 83..104
FT /accession="MIMAT0031865"
FT /product="ath-miR156a-3p"
FT /evidence=not_experimental
XX
SQ Sequence 123 BP; 34 A; 29 C; 26 G; 0 T; 34 other;
caagagaaac gcaaagaaac ugacagaaga gagugagcac acaaaggcaa uuugcauauc 60
auugcacuug cuucucuugc gugcucacug cucuuucugu cagauuccgg ugcugaucuc 120
uuu 123
//
ID ath-MIR156b standard; RNA; ATH; 183 BP.
XX
AC MI0000179;
XX
DE Arabidopsis thaliana miR156b stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR RFAM; RF00073; mir-156.
DR ASRP; ASRP1423; miR156.
XX
CC MIR156b is thought to target 10 mRNAs coding for proteins containing the
CC Squamosa-promoter Binding Protein (SBP) box [1]. The complementary sites
CC are downstream of this conserved domain, within a poorly conserved
CC protein-coding context or the 3' UTR [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 47..66
FT /accession="MIMAT0000167"
FT /product="ath-miR156b-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 454 [4-5], MPSS
FT [4], Illumina [6]"
FT miRNA 106..128
FT /accession="MIMAT0031866"
FT /product="ath-miR156b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 183 BP; 41 A; 43 C; 44 G; 0 T; 55 other;
gcuagaagag ggagagaugg ugauugagga augcaacaga gaaaacugac agaagagagu 60
gagcacaugc aggcacuguu augugucuau aacuuugcgu gugcgugcuc accucucuuu 120
cugucaguug ccuaucucug ccugcuugac cucucucucu cucucucucu cucaaauuug 180
gcu 183
//
ID ath-MIR156c standard; RNA; ATH; 104 BP.
XX
AC MI0000180;
XX
DE Arabidopsis thaliana miR156c stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR RFAM; RF00073; mir-156.
DR ASRP; ASRP1423; miR156.
XX
CC MIR156c is thought to target 10 mRNAs coding for proteins containing the
CC Squamosa-promoter Binding Protein (SBP) box [1]. The complementary sites
CC are downstream of this conserved domain, within a poorly conserved
CC protein-coding context or the 3' UTR [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..31
FT /accession="MIMAT0000168"
FT /product="ath-miR156c-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 5'RACE [3], 454
FT [4-5], MPSS [4], Illumina [6]"
FT miRNA 75..96
FT /accession="MIMAT0031867"
FT /product="ath-miR156c-3p"
FT /evidence=not_experimental
XX
SQ Sequence 104 BP; 25 A; 26 C; 24 G; 0 T; 29 other;
cgcauagaaa cugacagaag agagugagca cacaaaggca cuuugcaugu ucgaugcauu 60
ugcuucucuu gcgugcucac ugcucuaucu gucagauucc ggcu 104
//
ID ath-MIR156d standard; RNA; ATH; 118 BP.
XX
AC MI0000181;
XX
DE Arabidopsis thaliana miR156d stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR RFAM; RF00073; mir-156.
DR ASRP; ASRP1423; miR156.
XX
CC MIR156d is thought to target 10 mRNAs coding for proteins containing the
CC Squamosa-promoter Binding Protein (SBP) box [1]. The complementary sites
CC are downstream of this conserved domain, within a poorly conserved
CC protein-coding context or the 3' UTR [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..37
FT /accession="MIMAT0000169"
FT /product="ath-miR156d-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 454 [4-5], MPSS
FT [4], Illumina [6]"
FT miRNA 85..107
FT /accession="MIMAT0031868"
FT /product="ath-miR156d-3p"
FT /evidence=not_experimental
XX
SQ Sequence 118 BP; 33 A; 17 C; 30 G; 0 T; 38 other;
gaugggggaa aagaaguuga cagaagagag ugagcacaca aaggggaagu uguauaaaag 60
uuuuguauau gguugcuuuu gcgugcucac ucucuuuuug ucauaacuuc uccuucau 118
//
ID ath-MIR156e standard; RNA; ATH; 107 BP.
XX
AC MI0000182;
XX
DE Arabidopsis thaliana miR156e stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR RFAM; RF00073; mir-156.
DR ASRP; ASRP1423; miR156.
XX
CC MIR156e is thought to target 10 mRNAs coding for proteins containing the
CC Squamosa-promoter Binding Protein (SBP) box [1]. The complementary sites
CC are downstream of this conserved domain, within a poorly conserved
CC protein-coding context or the 3' UTR [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..26
FT /accession="MIMAT0000170"
FT /product="ath-miR156e"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 5'RACE [3], 454
FT [4-5], MPSS [4], Illumina [6]"
XX
SQ Sequence 107 BP; 21 A; 21 C; 28 G; 0 T; 37 other;
aggaggugac agaagagagu gagcacacau ggugguuucu ugcaugcuuu uuugauuagg 60
guuucaugcu ugaagcuaug ugugcuuacu cucucucugu caccccu 107
//
ID ath-MIR156f standard; RNA; ATH; 132 BP.
XX
AC MI0000183;
XX
DE Arabidopsis thaliana miR156f stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR RFAM; RF00073; mir-156.
DR ASRP; ASRP1423; miR156.
XX
CC MIR156f is thought to target 10 mRNAs coding for proteins containing the
CC Squamosa-promoter Binding Protein (SBP) box [1]. The complementary sites
CC are downstream of this conserved domain, within a poorly conserved
CC protein-coding context or the 3' UTR [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..40
FT /accession="MIMAT0000171"
FT /product="ath-miR156f-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 5'RACE [3], 454
FT [4-5], MPSS [4], Illumina [6]"
FT miRNA 92..112
FT /accession="MIMAT0031869"
FT /product="ath-miR156f-3p"
FT /evidence=not_experimental
XX
SQ Sequence 132 BP; 26 A; 34 C; 32 G; 0 T; 40 other;
gaguggugag gaauugaugg ugacagaaga gagugagcac acaugguggc uuucuugcau 60
auuugaaggu uccaugcuug aagcuaugug ugcucacucu cuauccguca cccccuucuc 120
ucccucuccc uc 132
//
ID ath-MIR157a standard; RNA; ATH; 98 BP.
XX
AC MI0000184;
XX
DE Arabidopsis thaliana miR157a stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP1424; miR157.
XX
CC MIR157a is thought, like the miR156 family, to target mRNAs coding for
CC proteins containing the Squamosa-promoter Binding Protein (SBP) box [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..24
FT /accession="MIMAT0000172"
FT /product="ath-miR157a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 3'RACE [3], 454
FT [4-5], MPSS [4], Illumina [6]"
FT miRNA 75..95
FT /accession="MIMAT0031870"
FT /product="ath-miR157a-3p"
FT /evidence=not_experimental
XX
SQ Sequence 98 BP; 24 A; 22 C; 21 G; 0 T; 31 other;
guguugacag aagauagaga gcacagauga ugagauacaa uucggagcau guucuuugca 60
ucuuacuccu uugugcucuc uagccuucug ucaucacc 98
//
ID ath-MIR157b standard; RNA; ATH; 132 BP.
XX
AC MI0000185;
XX
DE Arabidopsis thaliana miR157b stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP1424; miR157.
XX
CC MIR157b is thought, like the miR156 family, to target mRNAs coding for
CC proteins containing the Squamosa-promoter Binding Protein (SBP) box [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0000173"
FT /product="ath-miR157b-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 3'RACE [3], 454
FT [4-5], MPSS [4], Illumina [6]"
FT miRNA 90..110
FT /accession="MIMAT0031871"
FT /product="ath-miR157b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 132 BP; 32 A; 33 C; 26 G; 0 T; 41 other;
ugggaggcau ugauaguguu gacagaagau agagagcaca gaugauaaga uacaauuccu 60
cgcagcuucu uugcaucuua cuccuuugug cucucuagcc uucugucauc acccguuauu 120
ugccaucacc ca 132
//
ID ath-MIR157c standard; RNA; ATH; 217 BP.
XX
AC MI0000186;
XX
DE Arabidopsis thaliana miR157c stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP1424; miR157.
XX
CC MIR157c is thought, like the miR156 family, to target mRNAs coding for
CC proteins containing the Squamosa-promoter Binding Protein (SBP) box [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0000174"
FT /product="ath-miR157c-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 5'RACE [3], 454
FT [4-5], MPSS [4], Illumina [6]"
FT miRNA 170..190
FT /accession="MIMAT0031872"
FT /product="ath-miR157c-3p"
FT /evidence=not_experimental
XX
SQ Sequence 217 BP; 71 A; 40 C; 43 G; 0 T; 63 other;
agguuugaga gugauguugg uuguugacag aagauagaga gcacuaagga ugacaugcaa 60
guacauacau auauaucauc acaccgcaug uggaugauaa aauauguaua acaaauucaa 120
agaaagagag ggagagaaag agagagaacc ugcaucucua cucuuuugug cucucuauac 180
uucugucacc accuuuaucu cuucuucucu cuaaccu 217
//
ID ath-MIR157d standard; RNA; ATH; 221 BP.
XX
AC MI0000187;
XX
DE Arabidopsis thaliana miR157d stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
CC MIR157d is thought, like the MIR156 family, to target mRNAs coding for
CC proteins containing the Squamosa-promoter Binding Protein (SBP) box [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..43
FT /accession="MIMAT0000175"
FT /product="ath-miR157d"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 5'RACE [3], 454
FT [4-5], MPSS [4], Illumina [6]"
XX
SQ Sequence 221 BP; 69 A; 39 C; 42 G; 0 T; 71 other;
guggagggug auaguguggu ugcugacaga agauagagag cacuaaggau gcuaugcaaa 60
acagacacag auauguguuu cuaauuguau uucauacuuu aaccucaaag uugauauaaa 120
aaaagaaaga aagauagaag agcuagaaga cuaucugcau cucuauuccu augugcucuc 180
uaugcuucug ucaucaccuu ucuuucucua uuucucucua c 221
//
ID ath-MIR158a standard; RNA; ATH; 100 BP.
XX
AC MI0000188;
XX
DE Arabidopsis thaliana miR158a stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP142; miR158.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..40
FT /accession="MIMAT0031873"
FT /product="ath-miR158a-5p"
FT /evidence=not_experimental
FT miRNA 63..82
FT /accession="MIMAT0000176"
FT /product="ath-miR158a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 454 [4-5], MPSS
FT [4], Illumina [6]"
XX
SQ Sequence 100 BP; 27 A; 22 C; 19 G; 0 T; 32 other;
acacgucauc ucugugcuuc uuugucuaca auuuuggaaa aagugaugac gccauugcuc 60
uuucccaaau guagacaaag caauaccgug augaugucgu 100
//
ID ath-MIR159a standard; RNA; ATH; 184 BP.
XX
AC MI0000189;
XX
DE Arabidopsis thaliana miR159a stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12226481.
RA Mette MF, van der Winden J, Matzke M, Matzke AJ;
RT "Short RNAs can identify new candidate transposable element families in
RT Arabidopsis";
RL Plant Physiol. 130:6-9(2002).
XX
RN [3]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [4]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [5]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [6]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [7]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP1425; miR159.
XX
CC MIR159a was identified independently by Reinhart et al. [1] and Mette et
CC al. [2]. The latter group referred to this sequence by the internal
CC identifier MIR40a. This sequence is not related to C. elegans miR-40.
CC MIR159a is thought to target mRNAs coding for MYB proteins which are known
CC to bind to the promoter of the floral meristem identity gene LEAFY [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 163..183
FT /accession="MIMAT0000177"
FT /product="ath-miR159a"
FT /evidence=experimental
FT /experiment="cloned [1,4], Northern [1], 5'RACE [4], 454
FT [5-6], MPSS [5], Illumina [7]"
XX
SQ Sequence 184 BP; 55 A; 32 C; 40 G; 0 T; 57 other;
guagagcucc uuaaaguuca aacaugaguu gagcagggua aagaaaagcu gcuaagcuau 60
ggaucccaua agcccuaauc cuuguaaagu aaaaaaggau uugguuauau ggauugcaua 120
ucucaggagc uuuaacuugc ccuuuaaugg cuuuuacucu ucuuuggauu gaagggagcu 180
cuac 184
//
ID ath-MIR160a standard; RNA; ATH; 85 BP.
XX
AC MI0000190;
XX
DE Arabidopsis thaliana miR160a stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
RN [7]
RX PUBMED; 24119003.
RA Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi
RA GM, Gutierrez RA;
RT "Integrated RNA-seq and sRNA-seq analysis identifies novel
RT nitrate-responsive genes in Arabidopsis thaliana roots";
RL BMC Genomics. 14:701(2013).
XX
DR ASRP; ASRP1426; miR160.
XX
CC MIR160a is thought to target mRNAs coding for auxin response factor
CC proteins [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..24
FT /accession="MIMAT0000178"
FT /product="ath-miR160a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 5'RACE [3], 454
FT [4-5], MPSS [4], Illumina [6]"
FT miRNA 64..84
FT /accession="MIMAT0031874"
FT /product="ath-miR160a-3p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
XX
SQ Sequence 85 BP; 17 A; 22 C; 24 G; 0 T; 22 other;
guaugccugg cucccuguau gccauaugcu gagcccaucg aguaucgaug accuccgugg 60
auggcguaug aggagccaug cauau 85
//
ID ath-MIR160b standard; RNA; ATH; 89 BP.
XX
AC MI0000191;
XX
DE Arabidopsis thaliana miR160b stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP1426; miR160.
XX
CC MIR160b is thought to target mRNAs coding for auxin response factor
CC proteins [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..25
FT /accession="MIMAT0000179"
FT /product="ath-miR160b"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 5'RACE [3], 454
FT [4-5], MPSS [4], Illumina [6]"
XX
SQ Sequence 89 BP; 26 A; 21 C; 20 G; 0 T; 22 other;
gucgugccug gcucccugua ugccacaaga aaacaucgau uuaguuucaa aaucgaucac 60
uaguggcgua cagaguaguc aagcaugac 89
//
ID ath-MIR160c standard; RNA; ATH; 89 BP.
XX
AC MI0000192;
XX
DE Arabidopsis thaliana miR160c stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
RN [7]
RX PUBMED; 24119003.
RA Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi
RA GM, Gutierrez RA;
RT "Integrated RNA-seq and sRNA-seq analysis identifies novel
RT nitrate-responsive genes in Arabidopsis thaliana roots";
RL BMC Genomics. 14:701(2013).
XX
DR ASRP; ASRP1426; miR160.
XX
CC MIR160c is thought to target mRNAs coding for auxin response factor
CC proteins [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..25
FT /accession="MIMAT0000180"
FT /product="ath-miR160c-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 5'RACE [3], 454
FT [4-5], MPSS [4], Illumina [6]"
FT miRNA 68..88
FT /accession="MIMAT0031875"
FT /product="ath-miR160c-3p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
XX
SQ Sequence 89 BP; 19 A; 20 C; 26 G; 0 T; 24 other;
guuaugccug gcucccugua ugccacgagu ggauaccgau uuugguuuua aaaucggcug 60
ccgguggcgu acaaggaguc aagcaugac 89
//
ID ath-MIR161 standard; RNA; ATH; 173 BP.
XX
AC MI0000193;
XX
DE Arabidopsis thaliana miR161 stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [6]
RX PUBMED; 18542052.
RA German MA, Pillay M, Jeong DH, Hetawal A, Luo S, Janardhanan P, Kannan V,
RA Rymarquis LA, Nobuta K, German R, De Paoli E, Lu C, Schroth G, Meyers BC,
RA Green PJ;
RT "Global identification of microRNA-target RNA pairs by parallel analysis
RT of RNA ends";
RL Nat Biotechnol. 26:941-946(2008).
XX
RN [7]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP111; miR161.
XX
CC MIR161 is to target mRNAs coding for PPR repeat proteins [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 38..58
FT /accession="MIMAT0006779"
FT /product="ath-miR161.2"
FT /evidence=experimental
FT /experiment="cloned [3], PARE [6], Illumina [7]"
FT miRNA 47..67
FT /accession="MIMAT0000181"
FT /product="ath-miR161.1"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 5'RACE [3], 454
FT [4-5], MPSS [5], Illumina [7]"
XX
SQ Sequence 173 BP; 48 A; 30 C; 36 G; 0 T; 59 other;
ugcuugaucu cgguuuuuga ccaguuuauu gcgucgauca augcauugaa agugacuaca 60
ucgggguucc gauuuuuuuu guucuucaua ugaugaagcg gaaacaguaa ucaacccugg 120
uuuagucacu uucacugcau uaaucaaugc auuuguaaaa agagggaaaa gca 173
//
ID ath-MIR162a standard; RNA; ATH; 140 BP.
XX
AC MI0000194;
XX
DE Arabidopsis thaliana miR162a stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
DR ASRP; ASRP395; miR162.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..47
FT /accession="MIMAT0031876"
FT /product="ath-miR162a-5p"
FT /evidence=not_experimental
FT miRNA 89..109
FT /accession="MIMAT0000182"
FT /product="ath-miR162a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 3'RACE [3],
FT 5'RACE [3], 454 [4-5], MPSS [4]"
XX
SQ Sequence 140 BP; 39 A; 27 C; 31 G; 0 T; 43 other;
uaguuggaag aagagugaga gucgcuggag gcagcgguuc aucgaucucu uccugugaac 60
acauuaaaaa uguaaaagca ugaauagauc gauaaaccuc ugcauccagc guuugccucu 120
uguaucuuuc uuauugacuu 140
//
ID ath-MIR162b standard; RNA; ATH; 111 BP.
XX
AC MI0000195;
XX
DE Arabidopsis thaliana miR162b stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
DR ASRP; ASRP395; miR162.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0031877"
FT /product="ath-miR162b-5p"
FT /evidence=not_experimental
FT miRNA 79..99
FT /accession="MIMAT0000183"
FT /product="ath-miR162b-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 3'RACE [3],
FT 5'RACE [3], 454 [4-5], MPSS [4]"
XX
SQ Sequence 111 BP; 29 A; 24 C; 25 G; 0 T; 33 other;
gagugaaguc gcuggaggca gcgguucauc gaucaauucc ugugaauauu uauuuuuguu 60
uacaaaagca agaaucgauc gauaaaccuc ugcauccagc gcugcuugcu c 111
//
ID ath-MIR163 standard; RNA; ATH; 331 BP.
XX
AC MI0000196;
XX
DE Arabidopsis thaliana miR163 stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP1390; miR163.
XX
FH Key Location/Qualifiers
FH
FT miRNA 294..317
FT /accession="MIMAT0000184"
FT /product="ath-miR163"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], 5'RACE [2], 454
FT [3-4], MPSS [3], Illumina [5]"
XX
SQ Sequence 331 BP; 93 A; 73 C; 77 G; 0 T; 88 other;
acccggugga uaaaaucgag uuccaaccuc uucaacgaca acgauuucaa cacucucuuc 60
caggaacaac uuccuccagg cagaugauac uaaagugcug gaguucccgg uuccugagag 120
ugaguccaua ucaaaaugcg cauucguuau cacuugguug aacccauuug gggauuuaaa 180
uuuggaggug aaauggaacg cguaauugau gacuccuacg uggaaccucu ucuuaggaag 240
agcacggucg aagaaguaac ugcgcagugc uuaaaucgua gaugcuaaag ucguugaaga 300
ggacuuggaa cuucgauauu aucccccgug u 331
//
ID ath-MIR164a standard; RNA; ATH; 113 BP.
XX
AC MI0000197;
XX
DE Arabidopsis thaliana miR164a stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP1427; miR164.
XX
CC MIR164a is thought to target mRNAs coding for NAC domain containing
CC proteins such as Cup-Shaped Cotyledon 2 (CUC2) which is required for shoot
CC apical meristem formation [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0000185"
FT /product="ath-miR164a"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 5'RACE [3], 454
FT [4-5], MPSS [4], Illumina [6]"
XX
SQ Sequence 113 BP; 32 A; 31 C; 22 G; 0 T; 28 other;
gggugagaau cuccauguug gagaagcagg gcacgugcaa accaacaaac acgaaauccg 60
ucucauuugc uuauuugcac guacuuaacu ucuccaacau gagcucuuca ccc 113
//
ID ath-MIR164b standard; RNA; ATH; 153 BP.
XX
AC MI0000198;
XX
DE Arabidopsis thaliana miR164b stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP1427; miR164.
XX
CC MIR164b is thought to target mRNAs coding for NAC domain containing
CC proteins such as Cup-Shaped Cotyledon 2 (CUC2) which is required for shoot
CC apical meristem formation [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..23
FT /accession="MIMAT0000186"
FT /product="ath-miR164b-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 5'RACE [3], 454
FT [4-5], MPSS [4], Illumina [6]"
FT miRNA 133..153
FT /accession="MIMAT0031878"
FT /product="ath-miR164b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 153 BP; 39 A; 26 C; 38 G; 0 T; 50 other;
gauggagaag cagggcacgu gcauuacuag cucauauaua cacucucacc acaaaugcgu 60
guauauaugc ggaauuuugu gauauagaug ugugugugug uugaguguga ugauauggau 120
gaguuaguuc uucaugugcc caucuucacc auc 153
//
ID ath-MIR165a standard; RNA; ATH; 111 BP.
XX
AC MI0000199;
XX
DE Arabidopsis thaliana miR165a stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR RFAM; RF00075; mir-166.
DR ASRP; ASRP1428; miR165.
XX
CC MIR165a is thought to target mRNAs coding for HD-Zip transcription factors
CC including Phabulosa (PHB) and Phavoluta (PHV) that regulate axillary
CC meristem initiation and leaf development [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..28
FT /accession="MIMAT0031879"
FT /product="ath-miR165a-5p"
FT /evidence=not_experimental
FT miRNA 86..106
FT /accession="MIMAT0000187"
FT /product="ath-miR165a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 5'RACE [3], 454
FT [4-5], MPSS [4], Illumina [6]"
XX
SQ Sequence 111 BP; 31 A; 20 C; 27 G; 0 T; 33 other;
guugagggga auguugucug gaucgaggau auuauagaua uauacaugug uauguuaaug 60
auucaaguga ucauagagag uauccucgga ccaggcuuca ucccccccaa c 111
//
ID ath-MIR165b standard; RNA; ATH; 182 BP.
XX
AC MI0000200;
XX
DE Arabidopsis thaliana miR165b stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR RFAM; RF00075; mir-166.
DR ASRP; ASRP1428; miR165.
XX
CC MIR165b is thought to target mRNAs coding for HD-Zip transcription factors
CC including Phabulosa (PHB) and Phavoluta (PHV) that regulate axillary
CC meristem initiation and leaf development [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 137..157
FT /accession="MIMAT0000188"
FT /product="ath-miR165b"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 454 [4-5], MPSS
FT [4], Illumina [6]"
XX
SQ Sequence 182 BP; 52 A; 33 C; 36 G; 0 T; 61 other;
ugaagaggcu auuucuguug uggggaaugu uguuuggauc gaggauauca uaaacgcaua 60
cacauguuua uauguuauga ugcauuauau gacugaugua auguacauau auauacauac 120
augccacaug guaucgucgg accaggcuuc aucccccuca acauguuaau ugccuucaau 180
ca 182
//
ID ath-MIR166a standard; RNA; ATH; 170 BP.
XX
AC MI0000201;
XX
DE Arabidopsis thaliana miR166a stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
RN [7]
RX PUBMED; 24119003.
RA Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi
RA GM, Gutierrez RA;
RT "Integrated RNA-seq and sRNA-seq analysis identifies novel
RT nitrate-responsive genes in Arabidopsis thaliana roots";
RL BMC Genomics. 14:701(2013).
XX
DR RFAM; RF00075; mir-166.
DR ASRP; ASRP934; miR166.
XX
CC MIR166a, like miR165, is thought to target mRNAs coding for HD-Zip
CC transcription factors including Phabulosa (PHB) and Phavoluta (PHV) that
CC regulate axillary meristem initiation and leaf development [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0031880"
FT /product="ath-miR166a-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 134..154
FT /accession="MIMAT0000189"
FT /product="ath-miR166a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 5'RACE [3], 454
FT [4-5], MPSS [4], Illumina [6]"
XX
SQ Sequence 170 BP; 29 A; 41 C; 39 G; 0 T; 61 other;
aggggcuuuc ucuuuugagg ggacuguugu cuggcucgag gacucuggcu cgcucuauuc 60
auguuggauc ucuuucgauc uaacaaucga auugaaccuu cagauuucag auuugauuag 120
gguuuuagcg ucuucggacc aggcuucauu ccccccaauu guugcucccu 170
//
ID ath-MIR166b standard; RNA; ATH; 120 BP.
XX
AC MI0000202;
XX
DE Arabidopsis thaliana miR166b stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
RN [7]
RX PUBMED; 24119003.
RA Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi
RA GM, Gutierrez RA;
RT "Integrated RNA-seq and sRNA-seq analysis identifies novel
RT nitrate-responsive genes in Arabidopsis thaliana roots";
RL BMC Genomics. 14:701(2013).
XX
DR RFAM; RF00075; mir-166.
DR ASRP; ASRP934; miR166.
XX
CC MIR166b, like miR165, is thought to target mRNAs coding for HD-Zip
CC transcription factors including Phabulosa (PHB) and Phavoluta (PHV) that
CC regulate axillary meristem initiation and leaf development [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..27
FT /accession="MIMAT0031881"
FT /product="ath-miR166b-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 96..116
FT /accession="MIMAT0000190"
FT /product="ath-miR166b-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 5'RACE [3], 454
FT [4-5], MPSS [4], Illumina [6]"
XX
SQ Sequence 120 BP; 27 A; 25 C; 27 G; 0 T; 41 other;
uugaggggac uguugucugg cucgaggacu cuuauucuaa uacaaucuca uuugaauaca 60
uucagaucug augauugauu aggguuuuag ugucgucgga ccaggcuuca uuccccccaa 120
//
ID ath-MIR166c standard; RNA; ATH; 139 BP.
XX
AC MI0000203;
XX
DE Arabidopsis thaliana miR166c stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR RFAM; RF00075; mir-166.
DR ASRP; ASRP934; miR166.
XX
CC MIR166c, like miR165, is thought to target mRNAs coding for HD-Zip
CC transcription factors including Phabulosa (PHB) and Phavoluta (PHV) that
CC regulate axillary meristem initiation and leaf development [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 103..123
FT /accession="MIMAT0000191"
FT /product="ath-miR166c"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 5'RACE [3], 454
FT [4-5], MPSS [4], Illumina [6]"
XX
SQ Sequence 139 BP; 42 A; 28 C; 31 G; 0 T; 38 other;
gcgauuuagu guugagagga uuguugucug gcucgagguc augaagaaga gaaucacucg 60
aauuaauuug gaagaacaaa uuaagaaaac ccuagaugau ucucggacca ggcuucauuc 120
ccccuaaccu acuuaucgc 139
//
ID ath-MIR166d standard; RNA; ATH; 113 BP.
XX
AC MI0000204;
XX
DE Arabidopsis thaliana miR166d stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR RFAM; RF00075; mir-166.
DR ASRP; ASRP934; miR166.
XX
CC MIR166d, like miR165, is thought to target mRNAs coding for HD-Zip
CC transcription factors including Phabulosa (PHB) and Phavoluta (PHV) that
CC regulate axillary meristem initiation and leaf development [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 87..107
FT /accession="MIMAT0000192"
FT /product="ath-miR166d"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 5'RACE [3], 454
FT [4-5], MPSS [4], Illumina [6]"
XX
SQ Sequence 113 BP; 32 A; 23 C; 27 G; 0 T; 31 other;
gguugagagg aauauugucu ggcucgaggu caugaagaag aucgguagau ugauucauuu 60
uaaagaguga aaucccuaaa ugauucucgg accaggcuuc auucccccca acc 113
//
ID ath-MIR166e standard; RNA; ATH; 143 BP.
XX
AC MI0000205;
XX
DE Arabidopsis thaliana miR166e stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR RFAM; RF00075; mir-166.
DR ASRP; ASRP934; miR166.
XX
CC MIR166e, like miR165, is thought to target mRNAs coding for HD-Zip
CC transcription factors including Phabulosa (PHB) and Phavoluta (PHV) that
CC regulate axillary meristem initiation and leaf development [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..27
FT /accession="MIMAT0031882"
FT /product="ath-miR166e-5p"
FT /evidence=not_experimental
FT miRNA 119..139
FT /accession="MIMAT0000193"
FT /product="ath-miR166e-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 3'RACE [3], 454
FT [4-5], MPSS [4], Illumina [6]"
XX
SQ Sequence 143 BP; 36 A; 27 C; 26 G; 0 T; 54 other;
uugaggggaa uguugucugg cacgaggccc uuaacuuaga ucuauauuug auuauauaua 60
uaugucucuu cuuuauucau uagucuauac augaaugauc auuuuacggu uaaugacguc 120
ggaccaggcu ucauuccccu caa 143
//
ID ath-MIR166f standard; RNA; ATH; 105 BP.
XX
AC MI0000206;
XX
DE Arabidopsis thaliana miR166f stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR RFAM; RF00075; mir-166.
DR ASRP; ASRP934; miR166.
XX
CC MIR166f, like miR165, is thought to target mRNAs coding for HD-Zip
CC transcription factors including Phabulosa (PHB) and Phavoluta (PHV) that
CC regulate axillary meristem initiation and leaf development [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 78..98
FT /accession="MIMAT0000194"
FT /product="ath-miR166f"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 3'RACE [3], 454
FT [4-5], MPSS [4], Illumina [6]"
XX
SQ Sequence 105 BP; 28 A; 24 C; 22 G; 0 T; 31 other;
aaguucaggu gaaugaugcc uggcucgaga ccauucaauc ucaugaucuc augauuauaa 60
cgaugaugau gaugaugucg gaccaggcuu cauuccccuc aacuu 105
//
ID ath-MIR166g standard; RNA; ATH; 122 BP.
XX
AC MI0000207;
XX
DE Arabidopsis thaliana miR166g stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR RFAM; RF00075; mir-166.
DR ASRP; ASRP934; miR166.
XX
CC MIR166g, like miR165, is thought to target mRNAs coding for HD-Zip
CC transcription factors including Phabulosa (PHB) and Phavoluta (PHV) that
CC regulate axillary meristem initiation and leaf development [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 85..105
FT /accession="MIMAT0000195"
FT /product="ath-miR166g"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], 454 [3-4], MPSS
FT [3], Illumina [5]"
XX
SQ Sequence 122 BP; 31 A; 27 C; 26 G; 0 T; 38 other;
gcgauuuagg guuuagagga auguuguuug gcucgagguc auggagagua auucguuaac 60
ccaacucaaa acucuaaaug auucucggac caggcuucau uccccucaac cuauuuuauc 120
gc 122
//
ID ath-MIR167a standard; RNA; ATH; 138 BP.
XX
AC MI0000208;
XX
DE Arabidopsis thaliana miR167a stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP5; miR167.
XX
CC MIR167a is thought, like miR160, to target mRNAs coding for auxin response
CC factors, DNA binding proteins that are thought to control transcription in
CC response to the phytohormone auxin. Transcriptional regulation is
CC important for many of the diverse developmental responses to auxin
CC signals, which include cell elongation, division, and differentiation in
CC both roots and shoots [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0000196"
FT /product="ath-miR167a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 5'RACE [3], 454
FT [4-5], MPSS [4], Illumina [6]"
FT miRNA 101..121
FT /accession="MIMAT0031883"
FT /product="ath-miR167a-3p"
FT /evidence=not_experimental
XX
SQ Sequence 138 BP; 28 A; 32 C; 31 G; 0 T; 47 other;
uggugcaccg gcaucugaug aagcugccag caugaucuaa uuagcuuucu uuauccuuug 60
uuguguuuca ugacgauggu uaagagauca gucucgauua gaucauguuc gcaguuucac 120
ccguugacug ucgcaccc 138
//
ID ath-MIR167b standard; RNA; ATH; 109 BP.
XX
AC MI0000209;
XX
DE Arabidopsis thaliana miR167b stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP5; miR167.
XX
CC MIR167b is thought, like miR160, to target mRNAs coding for auxin response
CC factors, DNA binding proteins that are thought to control transcription in
CC response to the phytohormone auxin. Transcriptional regulation is
CC important for many of the diverse developmental responses to auxin
CC signals, which include cell elongation, division, and differentiation in
CC both roots and shoots [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0000197"
FT /product="ath-miR167b"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 5'RACE [3], 454
FT [4-5], MPSS [4], Illumina [6]"
XX
SQ Sequence 109 BP; 31 A; 25 C; 24 G; 0 T; 29 other;
gggaacaagu gaagcugcca gcaugaucua ucuuugguua agagaugaau guggaaacau 60
auugcuuaaa cccaagcuag gucaugcucu gacagccuca cuccuuccu 109
//
ID ath-MIR168a standard; RNA; ATH; 138 BP.
XX
AC MI0000210;
XX
DE Arabidopsis thaliana miR168a stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP1429; miR168.
XX
CC MIR168a thought to target mRNAs coding for Argonaute (AGO1), which is
CC required for axillary shoot meristem formation and leaf development in
CC Arabidopsis. It has been suggested that AGO1 may also influence miRNA
CC accumulation in plants and that miR168 may act as a negative-feedback
CC mechanism for controlling expression of the AGO1 gene [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..38
FT /accession="MIMAT0000198"
FT /product="ath-miR168a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 454 [4-5], MPSS
FT [4], Illumina [6]"
FT miRNA 103..123
FT /accession="MIMAT0031884"
FT /product="ath-miR168a-3p"
FT /evidence=not_experimental
XX
SQ Sequence 138 BP; 27 A; 35 C; 39 G; 0 T; 37 other;
caccaucggg cucggauucg cuuggugcag gucgggaacc aauucggcug acacagccuc 60
gugacuuuua aaccuuuauu gguuugugag cagggauugg aucccgccuu gcaucaacug 120
aaucggaucc ucgaggug 138
//
ID ath-MIR168b standard; RNA; ATH; 124 BP.
XX
AC MI0000211;
XX
DE Arabidopsis thaliana miR168b stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP1429; miR168.
XX
CC MIR168b thought to target mRNAs coding for Argonaute (AGO1), which is
CC required for axillary shoot meristem formation and leaf development in
CC Arabidopsis. It has been suggested that AGO1 may also influence miRNA
CC accumulation in plants and that miR168 may act as a negative-feedback
CC mechanism for controlling expression of the AGO1 gene [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0000199"
FT /product="ath-miR168b-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 454 [4-5], MPSS
FT [4], Illumina [6]"
FT miRNA 89..109
FT /accession="MIMAT0031885"
FT /product="ath-miR168b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 124 BP; 20 A; 28 C; 40 G; 0 T; 36 other;
uuaccggcgg ucucggauuc gcuuggugca ggucgggaac ugauuggcug acaccgacac 60
gugucuuguc augguugguu ugugagcucc cgucuuguau caacugaauc ggaguccgag 120
guga 124
//
ID ath-MIR169a standard; RNA; ATH; 226 BP.
XX
AC MI0000212;
XX
DE Arabidopsis thaliana miR169a stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP1430; miR169.
XX
CC MIR169 is thought to target mRNAs coding for CCAAT binding factor
CC (CBF)-HAP2-like proteins [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..38
FT /accession="MIMAT0000200"
FT /product="ath-miR169a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 5'RACE [3], 454
FT [4-5], MPSS [4], Illumina [6]"
FT miRNA 190..209
FT /accession="MIMAT0031886"
FT /product="ath-miR169a-3p"
FT /evidence=not_experimental
XX
SQ Sequence 226 BP; 75 A; 31 C; 39 G; 0 T; 81 other;
gugacgaaag uagugugcag ccaaggauga cuugccgauu uaaaugaucu uucuuuauac 60
ucuauuaaga caauuuaguu ucaaacuuuu uuuuuuuuuu uuuuuugaag gauucaggaa 120
gaaauuagga uauauuauuc cguauaaaau acaagauaua uaaaaccaaa aagaaaaagu 180
aacaugaucg gcaaguuguc cuuggcuaca cguuacuuug ugucgc 226
//
ID ath-MIR170 standard; RNA; ATH; 93 BP.
XX
AC MI0000213;
XX
DE Arabidopsis thaliana miR170 stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
DR ASRP; ASRP1431; miR170.
XX
CC MIR170 is thought to target mRNAs coding for GRAS domain or SCARECROW-like
CC proteins, a family of transcription factors whose members have been
CC implicated in radial patterning in roots, signaling by the phytohormone
CC gibberellin, and light signaling [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..38
FT /accession="MIMAT0031887"
FT /product="ath-miR170-5p"
FT /evidence=not_experimental
FT miRNA 59..79
FT /accession="MIMAT0000201"
FT /product="ath-miR170-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 5'RACE [3], 454
FT [4-5], MPSS [4]"
XX
SQ Sequence 93 BP; 18 A; 26 C; 17 G; 0 T; 32 other;
cgagagaguc ccucugauau uggccugguu cacucagauu cucuuuuacu aacucaucug 60
auugagccgu gucaauaucu caguccucuc ucg 93
//
ID ath-MIR171a standard; RNA; ATH; 123 BP.
XX
AC MI0000214;
XX
DE Arabidopsis thaliana miR171a stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP39; miR171.
XX
CC MIR171 is thought, like miR170, to target mRNAs coding for GRAS domain or
CC SCARECROW-like proteins, a family of transcription factors whose members
CC have been implicated in radial patterning in roots, signaling by the
CC phytohormone gibberellin, and light signaling [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0031888"
FT /product="ath-miR171a-5p"
FT /evidence=not_experimental
FT miRNA 88..108
FT /accession="MIMAT0000202"
FT /product="ath-miR171a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], 5'RACE [3], 454
FT [4-5], MPSS [4], Illumina [6]"
XX
SQ Sequence 123 BP; 30 A; 32 C; 21 G; 0 T; 40 other;
augagagagu cccuuugaua uuggccuggu ucacucagau cuuaccugac cacacacgua 60
gauauacauu auucucucua gauuaucuga uugagccgcg ccaauaucuc aguacucucu 120
cgu 123
//
ID ath-MIR172a standard; RNA; ATH; 102 BP.
XX
AC MI0000215;
XX
DE Arabidopsis thaliana miR172a stem-loop
XX
RN [1]
RX PUBMED; 12225663.
RA Park W, Li J, Song R, Messing J, Chen X;
RT "CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in
RT microRNA metabolism in Arabidopsis thaliana";
RL Curr Biol. 12:1484-1495(2002).
XX
RN [2]
RX PUBMED; 12226481.
RA Mette MF, van der Winden J, Matzke M, Matzke AJ;
RT "Short RNAs can identify new candidate transposable element families in
RT Arabidopsis";
RL Plant Physiol. 130:6-9(2002).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP1432; miR172.
XX
CC This sequence was independently identified by two groups. Park et al.
CC described miR172a1, found on chromosome 2 in Arabidopsis thaliana and
CC thought to target mRNAs coding for Apetala 2 (AP2) proteins, and miR172a2
CC (MIR:MI0000216) [1]. These sequences have been renamed miR172a and
CC miR172b here to match previous plant miRNA nomenclature. This sequence
CC was referred to by Mette et al. by the internal identifier MIR123a [2],
CC and was previously identified as MIR180a here. This sequence is not
CC related to mouse miR-123.
XX
FH Key Location/Qualifiers
FH
FT miRNA 78..98
FT /accession="MIMAT0000203"
FT /product="ath-miR172a"
FT /evidence=experimental
FT /experiment="cloned [1-2], 5'RACE [3], 454 [4-5], MPSS
FT [4], Illumina [6]"
XX
SQ Sequence 102 BP; 26 A; 21 C; 24 G; 0 T; 31 other;
ugcuguggca ucaucaagau ucacaucugu ugauggacgg uggugauuca cucuccacaa 60
aguucucuau gaaaaugaga aucuugauga ugcugcaucg gc 102
//
ID ath-MIR172b standard; RNA; ATH; 95 BP.
XX
AC MI0000216;
XX
DE Arabidopsis thaliana miR172b stem-loop
XX
RN [1]
RX PUBMED; 12225663.
RA Park W, Li J, Song R, Messing J, Chen X;
RT "CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in
RT microRNA metabolism in Arabidopsis thaliana";
RL Curr Biol. 12:1484-1495(2002).
XX
RN [2]
RX PUBMED; 12226481.
RA Mette MF, van der Winden J, Matzke M, Matzke AJ;
RT "Short RNAs can identify new candidate transposable element families in
RT Arabidopsis";
RL Plant Physiol. 130:6-9(2002).
XX
RN [3]
RX PUBMED; 15345049.
RA Wang XJ, Reyes JL, Chua NH, Gaasterland T;
RT "Prediction and identification of Arabidopsis thaliana microRNAs and their
RT mRNA targets";
RL Genome Biol. 5:R65(2004).
XX
RN [4]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [5]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [6]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [7]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP1432; miR172.
XX
CC This sequence was independently identified by two groups. Park et al.
CC described miR172a2, found on chromosome 5 in Arabidopsis thaliana and
CC thought to target mRNAs coding for Apetala 2 (AP2) proteins, and miR172a1
CC (MIR:MI0000215) [1]. These sequences have been renamed miR172b and
CC miR172a here to match previous plant miRNA nomenclature. This sequence
CC was referred to by Mette et al. by the internal identifier MIR123b [2],
CC and was previously identified as MIR180b here. This sequence is not
CC related to mouse miR-123. Wang et al. [2] report Northern blot evidence
CC for the miR172b* sequence from the opposite arm of the precursor.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..24
FT /accession="MIMAT0000204"
FT /product="ath-miR172b-5p"
FT /evidence=experimental
FT /experiment="Northern [3], 454 [6]"
FT miRNA 71..91
FT /accession="MIMAT0000205"
FT /product="ath-miR172b-3p"
FT /evidence=experimental
FT /experiment="cloned [1], 5'RACE [4], 454 [5-6], MPSS [5],
FT Illumina [7]"
XX
SQ Sequence 95 BP; 33 A; 15 C; 19 G; 0 T; 28 other;
aggcgcagca ccauuaagau ucacauggaa auugauaaau acccuaaauu aggguuuuga 60
uauguauaug agaaucuuga ugaugcugca ucaac 95
//
ID ath-MIR173 standard; RNA; ATH; 102 BP.
XX
AC MI0000217;
XX
DE Arabidopsis thaliana miR173 stem-loop
XX
RN [1]
RX PUBMED; 12225663.
RA Park W, Li J, Song R, Messing J, Chen X;
RT "CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in
RT microRNA metabolism in Arabidopsis thaliana";
RL Curr Biol. 12:1484-1495(2002).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
RN [6]
RX PUBMED; 22221297.
RA Zhang B, Xie D, Jin Z;
RT "Global analysis of non-coding small RNAs in Arabidopsis in response to
RT jasmonate treatment by deep sequencing technology";
RL J Integr Plant Biol. 54:73-86(2012).
XX
DR ASRP; ASRP886; miR173.
XX
CC MIR173 is thought to target mRNAs coding for a protein of unknown function
CC (At3g28460) [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0000206"
FT /product="ath-miR173-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3-4], MPSS [3], Illumina
FT [5]"
FT miRNA 75..95
FT /accession="MIMAT0022843"
FT /product="ath-miR173-3p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
XX
SQ Sequence 102 BP; 28 A; 17 C; 22 G; 0 T; 35 other;
uaaguacuuu cgcuugcaga gagaaaucac aguggucaaa aaaguuguag uuuucuuaaa 60
gucucuuucc ucugugauuc ucuguguaag cgaaagagcu ug 102
//
ID ath-MIR159b standard; RNA; ATH; 196 BP.
XX
AC MI0000218;
XX
DE Arabidopsis thaliana miR159b stem-loop
XX
RN [1]
RX PUBMED; 12226481.
RA Mette MF, van der Winden J, Matzke M, Matzke AJ;
RT "Short RNAs can identify new candidate transposable element families in
RT Arabidopsis";
RL Plant Physiol. 130:6-9(2002).
XX
RN [2]
RX PUBMED; 12225663.
RA Park W, Li J, Song R, Messing J, Chen X;
RT "CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in
RT microRNA metabolism in Arabidopsis thaliana";
RL Curr Biol. 12:1484-1495(2002).
XX
RN [3]
RX PUBMED; 12202040.
RA Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
RT "Prediction of plant microRNA targets";
RL Cell. 110:513-520(2002).
XX
RN [4]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [5]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [6]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [7]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP1747; miR159.
XX
CC Reference [1] described the discovery of MIR159b, but referred to the
CC sequence by the internal identifier MIR40b. This sequence is not related
CC to C. elegans miR-40. MIR159b is found on chromosome 1 in Arabidopsis
CC thaliana [2] and is thought to target mRNAs coding for MYB proteins which
CC are known to bind to the promoter of the floral meristem identity gene
CC LEAFY [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..25
FT /accession="MIMAT0031889"
FT /product="ath-miR159b-5p"
FT /evidence=not_experimental
FT miRNA 168..188
FT /accession="MIMAT0000207"
FT /product="ath-miR159b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4], 5'RACE [4], 454 [5-6], MPSS
FT [5], Illumina [7]"
XX
SQ Sequence 196 BP; 51 A; 37 C; 42 G; 0 T; 66 other;
ggaagagcuc cuugaaguuc aauggagggu uuagcagggu gaaguaaagc ugcuaagcua 60
uggaucccau aagccuuauc aaauucaaua uaauugauga uaagguuuuu uuuauggaug 120
ccauaucuca ggagcuuuca cuuaccccuu uaauggcuuc acucuucuuu ggauugaagg 180
gagcucuuca ucucuc 196
//
ID mmu-mir-10b standard; RNA; MMU; 68 BP.
XX
AC MI0000221;
XX
DE Mus musculus miR-10b stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00104; mir-10.
DR MGI; 2676804; Mir10b.
DR ENTREZGENE; 387144; Mir10b.
XX
CC The sequence of mouse miR-10b, as reported by Lagos-Quintana et al. [1],
CC is offset by 2 nt in the 3' direction with respect to sequences cloned
CC from human (MIR:MI0000267) and zebrafish (MIR:MI0001364). The mature
CC sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [2]. The 5' end of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..27
FT /accession="MIMAT0000208"
FT /product="mmu-miR-10b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 45..66
FT /accession="MIMAT0004538"
FT /product="mmu-miR-10b-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 68 BP; 21 A; 13 C; 14 G; 0 T; 20 other;
uauauacccu guagaaccga auuugugugg uacccacaua gucacagauu cgauucuagg 60
ggaauaua 68
//
ID mmu-mir-129-1 standard; RNA; MMU; 73 BP.
XX
AC MI0000222;
XX
DE Mus musculus miR-129-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676815; Mir129-1.
DR ENTREZGENE; 387237; Mir129-1.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0000209"
FT /product="mmu-miR-129-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], Illumina [5-6]"
FT miRNA 49..70
FT /accession="MIMAT0016994"
FT /product="mmu-miR-129-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
XX
SQ Sequence 73 BP; 15 A; 18 C; 17 G; 0 T; 23 other;
uggaucuuuu ugcggucugg gcuugcuguu cucucgacag uagucaggaa gcccuuaccc 60
caaaaaguau cua 73
//
ID mmu-mir-181a-2 standard; RNA; MMU; 76 BP.
XX
AC MI0000223;
XX
DE Mus musculus miR-181a-2 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676845; Mir181a-2.
DR ENTREZGENE; 387176; Mir181a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0000210"
FT /product="mmu-miR-181a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3,5], Illumina [6-7]"
FT miRNA 51..72
FT /accession="MIMAT0005443"
FT /product="mmu-miR-181a-2-3p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
XX
SQ Sequence 76 BP; 24 A; 18 C; 17 G; 0 T; 17 other;
ccauggaaca uucaacgcug ucggugaguu ugggauucaa aaacaaaaaa accaccgacc 60
guugacugua ccuugg 76
//
ID mmu-mir-182 standard; RNA; MMU; 75 BP.
XX
AC MI0000224;
XX
DE Mus musculus miR-182 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676846; Mir182.
DR ENTREZGENE; 387177; Mir182.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..31
FT /accession="MIMAT0000211"
FT /product="mmu-miR-182-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4,6]"
FT miRNA 50..70
FT /accession="MIMAT0016995"
FT /product="mmu-miR-182-3p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
XX
SQ Sequence 75 BP; 19 A; 16 C; 20 G; 0 T; 20 other;
accauuuuug gcaaugguag aacucacacc gguaagguaa ugggacccgg ugguucuaga 60
cuugccaacu auggu 75
//
ID mmu-mir-183 standard; RNA; MMU; 70 BP.
XX
AC MI0000225;
XX
DE Mus musculus miR-183 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676847; Mir183.
DR ENTREZGENE; 387178; Mir183.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000212"
FT /product="mmu-miR-183-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 45..66
FT /accession="MIMAT0004539"
FT /product="mmu-miR-183-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 70 BP; 21 A; 14 C; 18 G; 0 T; 17 other;
cuguguaugg cacugguaga auucacugug aacagucuca gucagugaau uaccgaaggg 60
ccauaaacag 70
//
ID mmu-mir-184 standard; RNA; MMU; 69 BP.
XX
AC MI0000226;
XX
DE Mus musculus miR-184 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676848; Mir184.
DR ENTREZGENE; 387179; Mir184.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0022690"
FT /product="mmu-miR-184-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0000213"
FT /product="mmu-miR-184-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 69 BP; 15 A; 15 C; 17 G; 0 T; 22 other;
ccuuuccuua ucacuuuucc agccagcuuu gugacucuaa guguuggacg gagaacugau 60
aaggguagg 69
//
ID mmu-mir-185 standard; RNA; MMU; 65 BP.
XX
AC MI0000227;
XX
DE Mus musculus miR-185 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676849; Mir185.
DR ENTREZGENE; 387180; Mir185.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000214"
FT /product="mmu-miR-185-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 41..61
FT /accession="MIMAT0016996"
FT /product="mmu-miR-185-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 65 BP; 10 A; 17 C; 21 G; 0 T; 17 other;
agggauugga gagaaaggca guuccugaug guccccuccc aggggcuggc uuuccucugg 60
uccuu 65
//
ID mmu-mir-186 standard; RNA; MMU; 71 BP.
XX
AC MI0000228;
XX
DE Mus musculus miR-186 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676850; Mir186.
DR ENTREZGENE; 387181; Mir186.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000215"
FT /product="mmu-miR-186-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 46..67
FT /accession="MIMAT0004540"
FT /product="mmu-miR-186-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 71 BP; 16 A; 12 C; 12 G; 0 T; 31 other;
acuuuccaaa gaauucuccu uuugggcuuu cucauuuuau uuuaagcccu aaggugaauu 60
uuuugggaag u 71
//
ID mmu-mir-187 standard; RNA; MMU; 61 BP.
XX
AC MI0000229;
XX
DE Mus musculus miR-187 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676851; Mir187.
DR ENTREZGENE; 387182; Mir187.
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..24
FT /accession="MIMAT0016997"
FT /product="mmu-miR-187-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 40..61
FT /accession="MIMAT0000216"
FT /product="mmu-miR-187-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 61 BP; 9 A; 21 C; 18 G; 0 T; 13 other;
ucaggcuaca acacaggacc cgggcgcugc ucugaccccu cgugucuugu guugcagccg 60
g 61
//
ID mmu-mir-188 standard; RNA; MMU; 68 BP.
XX
AC MI0000230;
XX
DE Mus musculus miR-188 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676852; Mir188.
DR ENTREZGENE; 387183; Mir188.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0000217"
FT /product="mmu-miR-188-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 45..65
FT /accession="MIMAT0004541"
FT /product="mmu-miR-188-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 68 BP; 14 A; 20 C; 18 G; 0 T; 16 other;
ucucacaucc cuugcauggu ggagggugag cucucugaaa accccuccca caugcagggu 60
uugcagga 68
//
ID mmu-mir-24-1 standard; RNA; MMU; 68 BP.
XX
AC MI0000231;
XX
DE Mus musculus miR-24-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [3]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [4]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [5]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [6]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [7]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [8]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [9]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676899; Mir24-1.
DR ENTREZGENE; 387142; Mir24-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0000218"
FT /product="mmu-miR-24-1-5p"
FT /evidence=experimental
FT /experiment="cloned [2,7], Illumina [8-9]"
FT miRNA 44..65
FT /accession="MIMAT0000219"
FT /product="mmu-miR-24-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3,5-7], Northern [3], Illumina [8]"
XX
SQ Sequence 68 BP; 16 A; 19 C; 16 G; 0 T; 17 other;
cuccggugcc uacugagcug auaucaguuc ucauuucaca cacuggcuca guucagcagg 60
aacaggag 68
//
ID mmu-mir-190a standard; RNA; MMU; 67 BP.
XX
AC MI0000232;
XX
DE Mus musculus miR-190 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676854; Mir190.
DR ENTREZGENE; 387185; Mir190.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000220"
FT /product="mmu-miR-190a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [4]"
FT miRNA 42..63
FT /accession="MIMAT0016998"
FT /product="mmu-miR-190a-3p"
FT /evidence=experimental
FT /experiment="454 [3], Illumina [4]"
XX
SQ Sequence 67 BP; 20 A; 9 C; 10 G; 0 T; 28 other;
cugugugaua uguuugauau auuagguugu uauuuaaucc aacuauauau caagcauauu 60
ccuacag 67
//
ID mmu-mir-191 standard; RNA; MMU; 74 BP.
XX
AC MI0000233;
XX
DE Mus musculus miR-191 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676855; Mir191.
DR ENTREZGENE; 387186; Mir191.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0000221"
FT /product="mmu-miR-191-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
FT miRNA 49..70
FT /accession="MIMAT0004542"
FT /product="mmu-miR-191-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 74 BP; 16 A; 22 C; 18 G; 0 T; 18 other;
agcgggcaac ggaaucccaa aagcagcugu ugucuccaga gcauuccagc ugcacuugga 60
uuucguuccc ugcu 74
//
ID hsa-mir-192 standard; RNA; HSA; 110 BP.
XX
AC MI0000234;
XX
DE Homo sapiens miR-192 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [3]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-192; hsa-miR-192.
DR HGNC; 31562; MIR192.
DR ENTREZGENE; 406967; MIR192.
XX
CC Lagos-Quintana et al. validated the presence of an 18 nt excised sequence
CC by cloning [1]. Lim et al. predicted the miR by computational methods
CC using conservation with mouse and Fugu rubripes sequences. Expression of
CC the excised miR was validated in zebrafish, and the 5' end mapped by PCR
CC [2]. The 3' ends of the reported sequences differ by 3 nt - this entry
CC contains the longer sequence. Lim et al. report three separate copies of
CC this gene named mir-192-1, -2 and -3 based on 2001 human genome assemblies
CC [2]. Subsequent assemblies suggest the presence of only one gene located
CC on chromosome 11.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0000222"
FT /product="hsa-miR-192-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT miRNA 67..88
FT /accession="MIMAT0004543"
FT /product="hsa-miR-192-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 110 BP; 22 A; 36 C; 27 G; 0 T; 25 other;
gccgagaccg agugcacagg gcucugaccu augaauugac agccagugcu cucgucuccc 60
cucuggcugc caauuccaua ggucacaggu auguucgccu caaugccagc 110
//
ID mmu-mir-193a standard; RNA; MMU; 66 BP.
XX
AC MI0000235;
XX
DE Mus musculus miR-193 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676857; Mir193.
DR ENTREZGENE; 387188; Mir193.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0004544"
FT /product="mmu-miR-193a-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT miRNA 41..62
FT /accession="MIMAT0000223"
FT /product="mmu-miR-193a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [2], Illumina [4-5]"
XX
SQ Sequence 66 BP; 15 A; 16 C; 20 G; 0 T; 15 other;
gagagcuggg ucuuugcggg caagaugaga gugucaguuc aacuggccua caaaguccca 60
guccuc 66
//
ID mmu-mir-194-1 standard; RNA; MMU; 67 BP.
XX
AC MI0000236;
XX
DE Mus musculus miR-194-1 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676858; Mir194-1.
DR ENTREZGENE; 387189; Mir194-1.
XX
CC Lagos-Quintana cloned miR-194 from mouse kidney tissue [1]. Michael et
CC al. subsequently verified expression of miR-194 in human [2]. Two
CC putative pairs of orthologous hairpin precursors structures are found in
CC mouse (mir-194-1 (MIR:MI0000236) on chromosome 1, and mir-194-2
CC (MIR:MI0000733) on chromosome 19) and human (mir-194-1 (MIR:MI0000488) on
CC chromosome 1, and mir-194-2 (MIR:MI0000732) on chromosome 11).
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000224"
FT /product="mmu-miR-194-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Illumina [4-5]"
FT miRNA 42..63
FT /accession="MIMAT0016999"
FT /product="mmu-miR-194-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 67 BP; 13 A; 15 C; 19 G; 0 T; 20 other;
aucgggugua acagcaacuc cauguggacu gugcucggau uccaguggag cugcuguuac 60
uucugau 67
//
ID mmu-mir-195a standard; RNA; MMU; 94 BP.
XX
AC MI0000237;
XX
DE Mus musculus miR-195 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676859; Mir195.
DR ENTREZGENE; 387190; Mir195.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0000225"
FT /product="mmu-miR-195a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4,6]"
FT miRNA 59..80
FT /accession="MIMAT0017000"
FT /product="mmu-miR-195a-3p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
XX
SQ Sequence 94 BP; 22 A; 23 C; 28 G; 0 T; 21 other;
acacccaacu cuccuggcuc uagcagcaca gaaauauugg cauggggaag ugagucugcc 60
aauauuggcu gugcugcucc aggcagggug guga 94
//
ID hsa-mir-196a-1 standard; RNA; HSA; 70 BP.
XX
AC MI0000238;
XX
DE Homo sapiens miR-196a-1 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [3]
RX PUBMED; 15105502.
RA Yekta S, Shih IH, Bartel DP;
RT "MicroRNA-directed cleavage of HOXB8 mRNA";
RL Science. 304:594-596(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-196a; hsa-miR-196a.
DR HGNC; 31567; MIR196A1.
DR ENTREZGENE; 406972; MIR196A1.
XX
CC Lagos-Quintana et al. [1] cloned this miRNA from human osteoblast sarcoma
CC cells. Lim et al [2] independently predicted this miRNA by computational
CC methods using conservation with mouse and Fugu rubripes sequences [2].
CC Expression of the excised miR was validated in zebrafish. The sequence
CC maps to human chromosome 17. Yekta et al. report that miR-196 miRNAs are
CC expressed from HOX gene clusters in mammals, and that HOX genes in these
CC clusters are targets of miR-196. Indeed, HOXB8 mRNA was shown to be a
CC natural target for miR-196-directed cleavage through a perfectly
CC complementary miR-target site. Other HOX genes have imperfect miR-196
CC complementary sites indicative of regulation by translational repression
CC [3]. The mature sequence shown here represents the most commonly cloned
CC form from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000226"
FT /product="hsa-miR-196a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,4-5]"
FT miRNA 45..65
FT /accession="MIMAT0037307"
FT /product="hsa-miR-196a-1-3p"
FT /evidence=not_experimental
XX
SQ Sequence 70 BP; 19 A; 15 C; 15 G; 0 T; 21 other;
gugaauuagg uaguuucaug uuguugggcc uggguuucug aacacaacaa cauuaaacca 60
cccgauucac 70
//
ID hsa-mir-197 standard; RNA; HSA; 75 BP.
XX
AC MI0000239;
XX
DE Homo sapiens miR-197 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-197; hsa-miR-197.
DR HGNC; 31569; MIR197.
DR ENTREZGENE; 406974; MIR197.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0022691"
FT /product="hsa-miR-197-5p"
FT /evidence=not_experimental
FT miRNA 48..69
FT /accession="MIMAT0000227"
FT /product="hsa-miR-197-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
XX
SQ Sequence 75 BP; 14 A; 24 C; 23 G; 0 T; 14 other;
ggcugugccg gguagagagg gcagugggag guaagagcuc uucacccuuc accaccuucu 60
ccacccagca uggcc 75
//
ID hsa-mir-198 standard; RNA; HSA; 62 BP.
XX
AC MI0000240;
XX
DE Homo sapiens miR-198 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-198; hsa-miR-198.
DR HGNC; 31570; MIR198.
DR ENTREZGENE; 406975; MIR198.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000228"
FT /product="hsa-miR-198"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 62 BP; 15 A; 10 C; 14 G; 0 T; 23 other;
ucauuggucc agaggggaga uagguuccug ugauuuuucc uucuucucua uagaauaaau 60
ga 62
//
ID mmu-mir-199a-1 standard; RNA; MMU; 70 BP.
XX
AC MI0000241;
XX
DE Mus musculus miR-199a-1 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676863; Mir199a-1.
DR ENTREZGENE; 387194; Mir199a-1.
XX
CC The hairpin precursor sequence mir-199 maps to two loci within 50 kb on
CC mouse chromosome 9. This sequence was named mir-199 in [1] and [2], but
CC is renamed here to avoid overlap with the predicted homologues of human
CC mir-199a-2 and mir-199b. Landgraf et al. demonstrate comparable
CC expression for products from both arms of the hairpin, which are therefore
CC renamed miR-199a-5p and miR-199a-3p here [4]. The mature sequences shown
CC here represent the most commonly cloned forms from large-scale cloning
CC studies [4]. The 5' end of the miRNA may be offset with respect to
CC previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0000229"
FT /product="mmu-miR-199a-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Northern [2], Illumina [5-6]"
FT miRNA 46..67
FT /accession="MIMAT0000230"
FT /product="mmu-miR-199a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [2], Illumina [5-6]"
XX
SQ Sequence 70 BP; 15 A; 17 C; 20 G; 0 T; 18 other;
gccaucccag uguucagacu accuguucag gaggcuggga cauguacagu agucugcaca 60
uugguuaggc 70
//
ID hsa-mir-199a-1 standard; RNA; HSA; 71 BP.
XX
AC MI0000242;
XX
DE Homo sapiens miR-199a-1 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [3]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-199a; hsa-miR-199a.
DR TARGETS:PICTAR-VERT; hsa-miR-199a*; hsa-miR-199a*.
DR HGNC; 31571; MIR199A1.
DR ENTREZGENE; 406976; MIR199A1.
XX
CC Lagos-Quintana et al. [1] cloned miR-199 from human osteoblast sarcoma
CC cells. They also reported identification of a miRNA from the opposite arm
CC in mouse cells. This sequence was named miR-199-s and the sequence from
CC the 3' arm of the homologous mouse precursor miR-199-as. Lim et al. [2]
CC independently predicted this miRNA computationally using conservation with
CC mouse and Fugu rubripes sequences [2]. Expression of the miR excised from
CC the 5' arm was validated in zebrafish, and the ends mapped by cloning. The
CC excised miR sequences are renamed miR-199a (to avoid confusion with the
CC subsequently identified miR-199b (MIR:MI0000282)) and miR-199a* (from the
CC 3' arm) here. The two putative hairpin precursors in human map to
CC chromosome 19 (mir-199a-1, MIR:MI0000242) and chromosome 1 (mir-199a-2,
CC MIR:MI0000281). Landgraf et al. show that both mature products are
CC expressed, prompting the renaming to miR-199a-5p and miR-199a-3p [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0000231"
FT /product="hsa-miR-199a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4]"
FT miRNA 47..68
FT /accession="MIMAT0000232"
FT /product="hsa-miR-199a-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5]"
FT /similarity="MI0000713"
XX
SQ Sequence 71 BP; 16 A; 18 C; 18 G; 0 T; 19 other;
gccaacccag uguucagacu accuguucag gaggcucuca auguguacag uagucugcac 60
auugguuagg c 71
//
ID mmu-mir-200b standard; RNA; MMU; 70 BP.
XX
AC MI0000243;
XX
DE Mus musculus miR-200b stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676875; Mir200b.
DR ENTREZGENE; 387243; Mir200b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0004545"
FT /product="mmu-miR-200b-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 45..66
FT /accession="MIMAT0000233"
FT /product="mmu-miR-200b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 70 BP; 14 A; 16 C; 20 G; 0 T; 20 other;
gccguggcca ucuuacuggg cagcauugga uagugucuga ucucuaauac ugccugguaa 60
ugaugacggc 70
//
ID mmu-mir-201 standard; RNA; MMU; 66 BP.
XX
AC MI0000244;
XX
DE Mus musculus miR-201 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676876; Mir201.
DR ENTREZGENE; 387197; Mir201.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000234"
FT /product="mmu-miR-201-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 41..63
FT /accession="MIMAT0017001"
FT /product="mmu-miR-201-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 66 BP; 18 A; 11 C; 12 G; 0 T; 25 other;
uaccuuacuc aguaaggcau uguucuucua uauuaauaaa ugaacagugc cuuucugugu 60
agggua 66
//
ID mmu-mir-202 standard; RNA; MMU; 72 BP.
XX
AC MI0000245;
XX
DE Mus musculus miR-202 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676877; Mir202.
DR ENTREZGENE; 387198; Mir202.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0004546"
FT /product="mmu-miR-202-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT miRNA 45..66
FT /accession="MIMAT0000235"
FT /product="mmu-miR-202-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
XX
SQ Sequence 72 BP; 16 A; 12 C; 19 G; 0 T; 25 other;
guuccuuuuu ccuaugcaua uacuucuuug uggaucuggu cuaaagaggu auagcgcaug 60
ggaagaugga gc 72
//
ID mmu-mir-203 standard; RNA; MMU; 76 BP.
XX
AC MI0000246;
XX
DE Mus musculus miR-203 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676878; Mir203.
DR ENTREZGENE; 387199; Mir203.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0004547"
FT /product="mmu-miR-203-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 48..69
FT /accession="MIMAT0000236"
FT /product="mmu-miR-203-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 76 BP; 18 A; 18 C; 19 G; 0 T; 21 other;
gccuggucca gugguucuug acaguucaac aguucuguag cacaauugug aaauguuuag 60
gaccacuaga cccggc 76
//
ID mmu-mir-204 standard; RNA; MMU; 68 BP.
XX
AC MI0000247;
XX
DE Mus musculus miR-204 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676879; Mir204.
DR ENTREZGENE; 387200; Mir204.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000237"
FT /product="mmu-miR-204-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 45..65
FT /accession="MIMAT0017002"
FT /product="mmu-miR-204-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 68 BP; 18 A; 13 C; 20 G; 0 T; 17 other;
uggacuuccc uuugucaucc uaugccugag aauauaugaa ggaggcuggg aaggcaaagg 60
gacguuca 68
//
ID mmu-mir-205 standard; RNA; MMU; 68 BP.
XX
AC MI0000248;
XX
DE Mus musculus miR-205 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676880; Mir205.
DR ENTREZGENE; 387201; Mir205.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000238"
FT /product="mmu-miR-205-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 43..64
FT /accession="MIMAT0017003"
FT /product="mmu-miR-205-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 68 BP; 14 A; 18 C; 16 G; 0 T; 20 other;
cucuuguccu ucauuccacc ggagucuguc uuaugccaac cagauuucag uggagugaag 60
cucaggag 68
//
ID mmu-mir-206 standard; RNA; MMU; 73 BP.
XX
AC MI0000249;
XX
DE Mus musculus miR-206 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676881; Mir206.
DR ENTREZGENE; 387202; Mir206.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0017004"
FT /product="mmu-miR-206-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 46..67
FT /accession="MIMAT0000239"
FT /product="mmu-miR-206-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 73 BP; 18 A; 14 C; 17 G; 0 T; 24 other;
ccaggccaca ugcuucuuua uauccucaua gauaucucag cacuauggaa uguaaggaag 60
ugugugguuu ugg 73
//
ID mmu-mir-207 standard; RNA; MMU; 79 BP.
XX
AC MI0000250;
XX
DE Mus musculus miR-207 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
DR MGI; 2676882; Mir207.
DR ENTREZGENE; 387203; Mir207.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..74
FT /accession="MIMAT0000240"
FT /product="mmu-miR-207"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3]"
XX
SQ Sequence 79 BP; 7 A; 23 C; 32 G; 0 T; 17 other;
aaggcagggg ugaggggcug cgggaggagc cgggcggagg cugcggcuug cgcuucuccu 60
ggcucuccuc ccucucuuu 79
//
ID hsa-mir-208a standard; RNA; HSA; 71 BP.
XX
AC MI0000251;
XX
DE Homo sapiens miR-208a stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-208; hsa-miR-208.
DR HGNC; 31585; MIR208A.
DR ENTREZGENE; 406990; MIR208A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0026474"
FT /product="hsa-miR-208a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 44..65
FT /accession="MIMAT0000241"
FT /product="hsa-miR-208a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000555"
XX
SQ Sequence 71 BP; 17 A; 15 C; 21 G; 0 T; 18 other;
ugacgggcga gcuuuuggcc cggguuauac cugaugcuca cguauaagac gagcaaaaag 60
cuuguugguc a 71
//
ID hsa-mir-129-1 standard; RNA; HSA; 72 BP.
XX
AC MI0000252;
XX
DE Homo sapiens miR-129-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-129; hsa-miR-129.
DR HGNC; 31512; MIR129-1.
DR ENTREZGENE; 406917; MIR129-1.
XX
CC This miRNA sequence was predicted based on homology to a verified miRNA
CC cloned from mouse cerebellum [1]. Expression of this miRNA was
CC subsequently verified in a human osteoblast sarcoma cell line [2].
CC Reference [2] named the human/mouse conserved sequence miR-129b, but
CC subsequent genome searches suggest that the same mature sequence may be
CC expressed from two predicted hairpin precursors in both human (this entry
CC and MIR:MI0000473) and mouse (MIR:MI0000222 and MIR:MI0000585). Landgraf
CC et al. show that the 5' product of mir-129-1 (this entry) is the
CC predominant one, whereas both 5' and 3' products are significantly
CC expressed from mir-129-2 (MIR:MI0000585) [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..25
FT /accession="MIMAT0000242"
FT /product="hsa-miR-129-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT miRNA 49..70
FT /accession="MIMAT0004548"
FT /product="hsa-miR-129-1-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 72 BP; 15 A; 19 C; 16 G; 0 T; 22 other;
ggaucuuuuu gcggucuggg cuugcuguuc cucucaacag uagucaggaa gcccuuaccc 60
caaaaaguau cu 72
//
ID hsa-mir-148a standard; RNA; HSA; 68 BP.
XX
AC MI0000253;
XX
DE Homo sapiens miR-148a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-148a; hsa-miR-148a.
DR HGNC; 31535; MIR148A.
DR ENTREZGENE; 406940; MIR148A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0004549"
FT /product="hsa-miR-148a-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 44..65
FT /accession="MIMAT0000243"
FT /product="hsa-miR-148a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [2]"
XX
SQ Sequence 68 BP; 20 A; 15 C; 16 G; 0 T; 17 other;
gaggcaaagu ucugagacac uccgacucug aguaugauag aagucagugc acuacagaac 60
uuugucuc 68
//
ID hsa-mir-30c-2 standard; RNA; HSA; 72 BP.
XX
AC MI0000254;
XX
DE Homo sapiens miR-30c-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-30c; hsa-miR-30c.
DR HGNC; 31627; MIR30C2.
DR ENTREZGENE; 407032; MIR30C2.
XX
CC miR-30c was cloned from mouse heart and brain tissues by Lagos-Quintana et
CC al. [1]. Two human hairpin precursor sequences are predicted based on
CC homology with the mouse sequences, on chromosomes 1 (MIR:MI0000736) and 6
CC (MIR:MI0000254) [3]. Expression of miR-30c was later independently
CC verified in human HL-60 leukemia cells [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0000244"
FT /product="hsa-miR-30c-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4-6]"
FT /similarity="MI0000548"
FT miRNA 47..68
FT /accession="MIMAT0004550"
FT /product="hsa-miR-30c-2-3p"
FT /evidence=experimental
FT /experiment="cloned [5]"
XX
SQ Sequence 72 BP; 22 A; 14 C; 16 G; 0 T; 20 other;
agauacugua aacauccuac acucucagcu guggaaagua agaaagcugg gagaaggcug 60
uuuacucuuu cu 72
//
ID hsa-mir-30d standard; RNA; HSA; 70 BP.
XX
AC MI0000255;
XX
DE Homo sapiens miR-30d stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [4]
RX PUBMED; 17989717.
RA Marton S, Garcia MR, Robello C, Persson H, Trajtenberg F, Pritsch O,
RA Rovira C, Naya H, Dighiero G, Cayota A;
RT "Small RNAs analysis in CLL reveals a deregulation of miRNA expression and
RT novel miRNA candidates of putative relevance in CLL pathogenesis";
RL Leukemia. 22:330-338(2008).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-30d; hsa-miR-30d.
DR HGNC; 31628; MIR30D.
DR ENTREZGENE; 407033; MIR30D.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000245"
FT /product="hsa-miR-30d-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
FT /similarity="MI0000549"
FT miRNA 46..67
FT /accession="MIMAT0004551"
FT /product="hsa-miR-30d-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 70 BP; 18 A; 16 C; 16 G; 0 T; 20 other;
guuguuguaa acauccccga cuggaagcug uaagacacag cuaagcuuuc agucagaugu 60
uugcugcuac 70
//
ID mmu-mir-122 standard; RNA; MMU; 66 BP.
XX
AC MI0000256;
XX
DE Mus musculus miR-122 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676805; Mirn122a.
DR ENTREZGENE; 387231; Mir122a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000246"
FT /product="mmu-miR-122-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 41..62
FT /accession="MIMAT0017005"
FT /product="mmu-miR-122-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 66 BP; 20 A; 14 C; 14 G; 0 T; 18 other;
agcuguggag ugugacaaug guguuugugu ccaaaccauc aaacgccauu aucacacuaa 60
auagcu 66
//
ID mmu-mir-143 standard; RNA; MMU; 63 BP.
XX
AC MI0000257;
XX
DE Mus musculus miR-143 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676828; Mir143.
DR ENTREZGENE; 387161; Mir143.
XX
CC Expression of this miRNA in mouse was independently verified in heart and
CC brain [1], embryonic stem cells [2] and testes [3]. The predominant miRNA
CC cloned by Langraf et al. has a 3' terminal U residue, which is
CC incompatible with the genome sequence [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0017006"
FT /product="mmu-miR-143-5p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
FT miRNA 40..60
FT /accession="MIMAT0000247"
FT /product="mmu-miR-143-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5,7]"
XX
SQ Sequence 63 BP; 12 A; 13 C; 22 G; 0 T; 16 other;
ccugaggugc agugcugcau cucuggucag uugggagucu gagaugaagc acuguagcuc 60
agg 63
//
ID mmu-mir-30e standard; RNA; MMU; 92 BP.
XX
AC MI0000259;
XX
DE Mus musculus miR-30e stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619329; Mir30e.
DR ENTREZGENE; 723836; Mir30e.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [5].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000248"
FT /product="mmu-miR-30e-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4-5], Illumina [6-7]"
FT miRNA 59..80
FT /accession="MIMAT0000249"
FT /product="mmu-miR-30e-3p"
FT /evidence=experimental
FT /experiment="cloned [3,5], Illumina [6-7]"
XX
SQ Sequence 92 BP; 20 A; 18 C; 29 G; 0 T; 25 other;
gggcagucuu ugcuacugua aacauccuug acuggaagcu guaagguguu gagaggagcu 60
uucagucgga uguuuacagc ggcaggcugc ca 92
//
ID hsa-mir-139 standard; RNA; HSA; 68 BP.
XX
AC MI0000261;
XX
DE Homo sapiens miR-139 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-139; hsa-miR-139.
DR HGNC; 31526; MIR139.
DR ENTREZGENE; 406931; MIR139.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0000250"
FT /product="hsa-miR-139-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000693"
FT miRNA 43..65
FT /accession="MIMAT0004552"
FT /product="hsa-miR-139-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 68 BP; 11 A; 16 C; 24 G; 0 T; 17 other;
guguauucua cagugcacgu gucuccagug uggcucggag gcuggagacg cggcccuguu 60
ggaguaac 68
//
ID hsa-mir-147a standard; RNA; HSA; 72 BP.
XX
AC MI0000262;
XX
DE Homo sapiens miR-147a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-147; hsa-miR-147.
DR HGNC; 31534; MIR147.
DR ENTREZGENE; 406939; MIR147.
XX
CC Lagos-Quintana et al. cloned miR-147 from mouse spleen tissue [1], but the
CC sequence is not present in the mouse genome assembly (NCBI32). The human
CC genome sequence contains a predicted precursor hairpin for miR-147 shown
CC in [1] (supplementary information) and represented here. The expression
CC of miR-147 has not been verified in human.
XX
FH Key Location/Qualifiers
FH
FT miRNA 47..66
FT /accession="MIMAT0000251"
FT /product="hsa-miR-147a"
FT /evidence=not_experimental
XX
SQ Sequence 72 BP; 24 A; 16 C; 14 G; 0 T; 18 other;
aaucuaaaga caacauuucu gcacacacac cagacuaugg aagccagugu guggaaaugc 60
uucugcuaga uu 72
//
ID hsa-mir-7-1 standard; RNA; HSA; 110 BP.
XX
AC MI0000263;
XX
DE Homo sapiens miR-7-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR RFAM; RF00053; mir-7.
DR TARGETS:PICTAR-VERT; hsa-miR-7; hsa-miR-7.
DR HGNC; 31638; MIR7-1.
DR ENTREZGENE; 407043; MIR7-1.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the 5' end mapped by PCR. Landgraf
CC et al. confirm expression in human [2]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..47
FT /accession="MIMAT0000252"
FT /product="hsa-miR-7-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0001360"
FT miRNA 66..87
FT /accession="MIMAT0004553"
FT /product="hsa-miR-7-1-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 110 BP; 29 A; 21 C; 25 G; 0 T; 35 other;
uuggauguug gccuaguucu guguggaaga cuagugauuu uguuguuuuu agauaacuaa 60
aucgacaaca aaucacaguc ugccauaugg cacaggccau gccucuacag 110
//
ID hsa-mir-7-2 standard; RNA; HSA; 110 BP.
XX
AC MI0000264;
XX
DE Homo sapiens miR-7-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR RFAM; RF00053; mir-7.
DR TARGETS:PICTAR-VERT; hsa-miR-7; hsa-miR-7.
DR HGNC; 31639; MIR7-2.
DR ENTREZGENE; 407044; MIR7-2.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the 5' end mapped by PCR. Landgraf
CC et al. confirm expression in human [2]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 32..55
FT /accession="MIMAT0000252"
FT /product="hsa-miR-7-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0001361"
FT miRNA 72..93
FT /accession="MIMAT0004554"
FT /product="hsa-miR-7-2-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 110 BP; 26 A; 30 C; 26 G; 0 T; 28 other;
cuggauacag aguggaccgg cuggccccau cuggaagacu agugauuuug uuguugucuu 60
acugcgcuca acaacaaauc ccagucuacc uaauggugcc agccaucgca 110
//
ID hsa-mir-7-3 standard; RNA; HSA; 110 BP.
XX
AC MI0000265;
XX
DE Homo sapiens miR-7-3 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR RFAM; RF00053; mir-7.
DR TARGETS:PICTAR-VERT; hsa-miR-7; hsa-miR-7.
DR HGNC; 31640; MIR7-3.
DR ENTREZGENE; 407045; MIR7-3.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the 5' end mapped by PCR. Expression
CC in human was later verified by cloning [1,2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..54
FT /accession="MIMAT0000252"
FT /product="hsa-miR-7-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0001362"
XX
SQ Sequence 110 BP; 25 A; 24 C; 30 G; 0 T; 31 other;
agauuagagu ggcugugguc uagugcugug uggaagacua gugauuuugu uguucugaug 60
uacuacgaca acaagucaca gccggccuca uagcgcagac ucccuucgac 110
//
ID hsa-mir-10a standard; RNA; HSA; 110 BP.
XX
AC MI0000266;
XX
DE Homo sapiens miR-10a stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR RFAM; RF00104; mir-10.
DR TARGETS:PICTAR-VERT; hsa-miR-10a; hsa-miR-10a.
DR HGNC; 31497; MIR10A.
DR ENTREZGENE; 406902; MIR10A.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. Mature
CC products were later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0000253"
FT /product="hsa-miR-10a-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0001363"
FT miRNA 63..84
FT /accession="MIMAT0004555"
FT /product="hsa-miR-10a-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 110 BP; 28 A; 20 C; 23 G; 0 T; 39 other;
gaucugucug ucuucuguau auacccugua gauccgaauu uguguaagga auuuuguggu 60
cacaaauucg uaucuagggg aauauguagu ugacauaaac acuccgcucu 110
//
ID hsa-mir-10b standard; RNA; HSA; 110 BP.
XX
AC MI0000267;
XX
DE Homo sapiens miR-10b stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR RFAM; RF00104; mir-10.
DR TARGETS:PICTAR-VERT; hsa-miR-10b; hsa-miR-10b.
DR HGNC; 31498; MIR10B.
DR ENTREZGENE; 406903; MIR10B.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. Michael
CC et al. subsequently verified expression of miR-10b in human [2]. The
CC mature sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..49
FT /accession="MIMAT0000254"
FT /product="hsa-miR-10b-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
FT miRNA 66..87
FT /accession="MIMAT0004556"
FT /product="hsa-miR-10b-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 110 BP; 32 A; 19 C; 25 G; 0 T; 34 other;
ccagagguug uaacguuguc uauauauacc cuguagaacc gaauuugugu gguauccgua 60
uagucacaga uucgauucua ggggaauaua uggucgaugc aaaaacuuca 110
//
ID hsa-mir-34a standard; RNA; HSA; 110 BP.
XX
AC MI0000268;
XX
DE Homo sapiens miR-34a stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
RC Erratum RNA 9:631-632(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-34a; hsa-miR-34a.
DR HGNC; 31635; MIR34A.
DR ENTREZGENE; 407040; MIR34A.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. Dostie
CC et al. independently cloned this sequence in human but misnamed the
CC sequence miR-172 (the sequence is unrelated to MIR172 from Arabidopsis)
CC [2]. The sequence maps to human chromosome 1. Human miR-34a was
CC previously named miR-34 here and in [1], but is renamed to clarify
CC homology with the alternatively named mouse sequence (MIR:MI0000584). The
CC mature sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0000255"
FT /product="hsa-miR-34a-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
FT miRNA 64..85
FT /accession="MIMAT0004557"
FT /product="hsa-miR-34a-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 110 BP; 23 A; 21 C; 35 G; 0 T; 31 other;
ggccagcugu gaguguuucu uuggcagugu cuuagcuggu uguugugagc aauaguaagg 60
aagcaaucag caaguauacu gcccuagaag ugcugcacgu uguggggccc 110
//
ID hsa-mir-181a-2 standard; RNA; HSA; 110 BP.
XX
AC MI0000269;
XX
DE Homo sapiens miR-181a-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [6]
RX PUBMED; 17989717.
RA Marton S, Garcia MR, Robello C, Persson H, Trajtenberg F, Pritsch O,
RA Rovira C, Naya H, Dighiero G, Cayota A;
RT "Small RNAs analysis in CLL reveals a deregulation of miRNA expression and
RT novel miRNA candidates of putative relevance in CLL pathogenesis";
RL Leukemia. 22:330-338(2008).
XX
DR RFAM; RF00076; mir-181.
DR TARGETS:PICTAR-VERT; hsa-mir-181a-2; hsa-mir-181a-2.
DR HGNC; 31549; MIR181A2.
DR ENTREZGENE; 406954; MIR181A2.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. Landgraf
CC et al. and Lui et al. later verify expression in human [4-5].
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..61
FT /accession="MIMAT0000256"
FT /product="hsa-miR-181a-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4-6]"
FT miRNA 77..98
FT /accession="MIMAT0004558"
FT /product="hsa-miR-181a-2-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 110 BP; 29 A; 25 C; 30 G; 0 T; 26 other;
agaagggcua ucaggccagc cuucagagga cuccaaggaa cauucaacgc ugucggugag 60
uuugggauuu gaaaaaacca cugaccguug acuguaccuu gggguccuua 110
//
ID hsa-mir-181b-1 standard; RNA; HSA; 110 BP.
XX
AC MI0000270;
XX
DE Homo sapiens miR-181b-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR RFAM; RF00076; mir-181.
DR TARGETS:PICTAR-VERT; hsa-miR-181b; hsa-miR-181b.
DR HGNC; 31550; MIR181B1.
DR ENTREZGENE; 406955; MIR181B1.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. Its
CC expression was later verified in human BC-1 cells [3]. There are two
CC predicted hairpin precursor sequences in the human genome; mir-181b-1
CC (MIR:MI0000270) is found on chromosome 1 [1], and mir-181b-2
CC (MIR:MI0000683) on chromosome 9 [2]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 36..58
FT /accession="MIMAT0000257"
FT /product="hsa-miR-181b-5p"
FT /evidence=experimental
FT /experiment="cloned [3-5]"
FT /similarity="MI0001366"
FT miRNA 76..96
FT /accession="MIMAT0022692"
FT /product="hsa-miR-181b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 110 BP; 29 A; 23 C; 26 G; 0 T; 32 other;
ccugugcaga gauuauuuuu uaaaagguca caaucaacau ucauugcugu cgguggguug 60
aacugugugg acaagcucac ugaacaauga augcaacugu ggccccgcuu 110
//
ID hsa-mir-181c standard; RNA; HSA; 110 BP.
XX
AC MI0000271;
XX
DE Homo sapiens miR-181c stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR RFAM; RF00076; mir-181.
DR TARGETS:PICTAR-VERT; hsa-miR-181c; hsa-miR-181c.
DR HGNC; 31552; MIR181C.
DR ENTREZGENE; 406957; MIR181C.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. Landgraf
CC et al. confirm the expression of miR-181c in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..48
FT /accession="MIMAT0000258"
FT /product="hsa-miR-181c-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0001380"
FT miRNA 65..86
FT /accession="MIMAT0004559"
FT /product="hsa-miR-181c-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 110 BP; 25 A; 26 C; 34 G; 0 T; 25 other;
cggaaaauuu gccaaggguu ugggggaaca uucaaccugu cggugaguuu gggcagcuca 60
ggcaaaccau cgaccguuga guggacccug aggccuggaa uugccauccu 110
//
ID hsa-mir-182 standard; RNA; HSA; 110 BP.
XX
AC MI0000272;
XX
DE Homo sapiens miR-182 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-182; hsa-miR-182.
DR TARGETS:PICTAR-VERT; hsa-miR-182*; hsa-miR-182*.
DR HGNC; 31553; MIR182.
DR ENTREZGENE; 406958; MIR182.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..46
FT /accession="MIMAT0000259"
FT /product="hsa-miR-182-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0001368"
FT miRNA 67..87
FT /accession="MIMAT0000260"
FT /product="hsa-miR-182-3p"
FT /evidence=not_experimental
FT /similarity="MI0001368"
XX
SQ Sequence 110 BP; 22 A; 30 C; 33 G; 0 T; 25 other;
gagcugcuug ccuccccccg uuuuuggcaa ugguagaacu cacacuggug agguaacagg 60
auccgguggu ucuagacuug ccaacuaugg ggcgaggacu cagccggcac 110
//
ID hsa-mir-183 standard; RNA; HSA; 110 BP.
XX
AC MI0000273;
XX
DE Homo sapiens miR-183 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-183; hsa-miR-183.
DR HGNC; 31554; MIR183.
DR ENTREZGENE; 406959; MIR183.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the 5' end mapped by PCR. Expression
CC was later confirmed in human [2,3]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..48
FT /accession="MIMAT0000261"
FT /product="hsa-miR-183-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
FT miRNA 66..87
FT /accession="MIMAT0004560"
FT /product="hsa-miR-183-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 110 BP; 32 A; 25 C; 29 G; 0 T; 24 other;
ccgcagagug ugacuccugu ucuguguaug gcacugguag aauucacugu gaacagucuc 60
agucagugaa uuaccgaagg gccauaaaca gagcagagac agauccacga 110
//
ID hsa-mir-187 standard; RNA; HSA; 109 BP.
XX
AC MI0000274;
XX
DE Homo sapiens miR-187 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-187; hsa-miR-187.
DR HGNC; 31558; MIR187.
DR ENTREZGENE; 406963; MIR187.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the 5' end mapped by PCR. Landgraf
CC et al. confirm expression in human [2]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 35..56
FT /accession="MIMAT0004561"
FT /product="hsa-miR-187-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 71..92
FT /accession="MIMAT0000262"
FT /product="hsa-miR-187-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0001370"
XX
SQ Sequence 109 BP; 19 A; 35 C; 36 G; 0 T; 19 other;
ggucgggcuc accaugacac agugugagac cucgggcuac aacacaggac ccgggcgcug 60
cucugacccc ucgugucuug uguugcagcc ggagggacgc agguccgca 109
//
ID hsa-mir-196a-2 standard; RNA; HSA; 110 BP.
XX
AC MI0000279;
XX
DE Homo sapiens miR-196a-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15105502.
RA Yekta S, Shih IH, Bartel DP;
RT "MicroRNA-directed cleavage of HOXB8 mRNA";
RL Science. 304:594-596(2004).
XX
RN [3]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-196a; hsa-miR-196a.
DR HGNC; 31568; MIR196A2.
DR ENTREZGENE; 406973; MIR196A2.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. miR-196a
CC was later validated in human [3,4]. Yekta et al. report that miR-196
CC miRNAs are expressed from HOX gene clusters in mammals, and that HOX genes
CC in these clusters are targets of miR-196. Indeed, HOXB8 mRNA was shown to
CC be a natural target for miR-196-directed cleavage through a perfectly
CC complementary miR-target site. Other HOX genes have imperfect miR-196
CC complementary sites indicative of regulation by translational repression
CC [2]. The mature sequence shown here represents the most commonly cloned
CC form from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0000226"
FT /product="hsa-miR-196a-5p"
FT /evidence=experimental
FT /experiment="cloned [3-5]"
FT miRNA 62..83
FT /accession="MIMAT0004562"
FT /product="hsa-miR-196a-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 110 BP; 21 A; 21 C; 32 G; 0 T; 36 other;
ugcucgcuca gcugaucugu ggcuuaggua guuucauguu guugggauug aguuuugaac 60
ucggcaacaa gaaacugccu gaguuacauc agucgguuuu cgucgagggc 110
//
ID hsa-mir-199a-2 standard; RNA; HSA; 110 BP.
XX
AC MI0000281;
XX
DE Homo sapiens miR-199a-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [3]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-199a; hsa-miR-199a.
DR TARGETS:PICTAR-VERT; hsa-miR-199a*; hsa-miR-199a*.
DR HGNC; 31572; MIR199A2.
DR ENTREZGENE; 406977; MIR199A2.
XX
CC Lagos-Quintana et al. [1] cloned miR-199 from human osteoblast sarcoma
CC cells. They also reported identification of a miRNA from the opposite arm
CC in mouse cells. This sequence was named miR-199-s and the sequence from
CC the 3' arm of the homologous mouse precursor miR-199-as. Lim et al. [2]
CC independently predicted this miRNA computationally using conservation with
CC mouse and Fugu rubripes sequences [2]. Expression of the miR excised from
CC the 5' arm was validated in zebrafish, and the ends mapped by cloning. The
CC excised miR sequences are renamed miR-199a (to avoid confusion with the
CC subsequently identified miR-199b (MIR:MI0000282)) and miR-199a* (from the
CC 3' arm) here. The two putative hairpin precursors in human map to
CC chromosome 19 (mir-199a-1, MIR:MI0000242) and chromosome 1 (mir-199a-2,
CC MIR:MI0000281). Landgraf et al. show that both mature products are
CC expressed, prompting the renaming to miR-199a-5p and miR-199a-3p [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..53
FT /accession="MIMAT0000231"
FT /product="hsa-miR-199a-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
FT miRNA 70..91
FT /accession="MIMAT0000232"
FT /product="hsa-miR-199a-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5]"
FT /similarity="MI0000713"
XX
SQ Sequence 110 BP; 25 A; 27 C; 32 G; 0 T; 26 other;
aggaagcuuc uggagauccu gcuccgucgc cccaguguuc agacuaccug uucaggacaa 60
ugccguugua caguagucug cacauugguu agacugggca agggagagca 110
//
ID hsa-mir-199b standard; RNA; HSA; 110 BP.
XX
AC MI0000282;
XX
DE Homo sapiens miR-199b stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-199b; hsa-miR-199b.
DR HGNC; 31573; MIR199B.
DR ENTREZGENE; 406978; MIR199B.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised 5'
CC miR has been validated in zebrafish, the ends mapped by cloning [2], and
CC later verified in human [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..48
FT /accession="MIMAT0000263"
FT /product="hsa-miR-199b-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT miRNA 65..86
FT /accession="MIMAT0004563"
FT /product="hsa-miR-199b-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 110 BP; 23 A; 31 C; 27 G; 0 T; 29 other;
ccagaggaca ccuccacucc gucuacccag uguuuagacu aucuguucag gacucccaaa 60
uuguacagua gucugcacau ugguuaggcu gggcuggguu agacccucgg 110
//
ID hsa-mir-203a standard; RNA; HSA; 110 BP.
XX
AC MI0000283;
XX
DE Homo sapiens miR-203a stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17622355.
RA Sonkoly E, Wei T, Janson PC, Saaf A, Lundeberg L, Tengvall-Linder M,
RA Norstedt G, Alenius H, Homey B, Scheynius A, Stahle M, Pivarcsi A;
RT "MicroRNAs: novel regulators involved in the pathogenesis of psoriasis?";
RL PLoS One. 2:e610(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-203; hsa-miR-203.
DR HGNC; 31581; MIR203.
DR ENTREZGENE; 406986; MIR203.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. Landgraf
CC et al. confirm expression in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..51
FT /accession="MIMAT0031890"
FT /product="hsa-miR-203a-5p"
FT /evidence=not_experimental
FT miRNA 65..86
FT /accession="MIMAT0000264"
FT /product="hsa-miR-203a-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0001376"
XX
SQ Sequence 110 BP; 22 A; 26 C; 37 G; 0 T; 25 other;
guguugggga cucgcgcgcu ggguccagug guucuuaaca guucaacagu ucuguagcgc 60
aauugugaaa uguuuaggac cacuagaccc ggcgggcgcg gcgacagcga 110
//
ID hsa-mir-204 standard; RNA; HSA; 110 BP.
XX
AC MI0000284;
XX
DE Homo sapiens miR-204 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-204; hsa-miR-204.
DR HGNC; 31582; MIR204.
DR ENTREZGENE; 406987; MIR204.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. Landgraf
CC et al. confirm expression in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 33..54
FT /accession="MIMAT0000265"
FT /product="hsa-miR-204-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0001377"
FT miRNA 72..92
FT /accession="MIMAT0022693"
FT /product="hsa-miR-204-3p"
FT /evidence=not_experimental
XX
SQ Sequence 110 BP; 25 A; 24 C; 29 G; 0 T; 32 other;
ggcuacaguc uuucuucaug ugacucgugg acuucccuuu gucauccuau gccugagaau 60
auaugaagga ggcugggaag gcaaagggac guucaauugu caucacuggc 110
//
ID hsa-mir-205 standard; RNA; HSA; 110 BP.
XX
AC MI0000285;
XX
DE Homo sapiens miR-205 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [4]
RX PUBMED; 19144710.
RA Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G;
RT "Identification of novel Epstein-Barr virus microRNA genes from
RT nasopharyngeal carcinomas";
RL J Virol. 83:3333-3341(2009).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-205; hsa-miR-205.
DR HGNC; 31583; MIR205.
DR ENTREZGENE; 406988; MIR205.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. Landgraf
CC et al. confirm expression in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 34..55
FT /accession="MIMAT0000266"
FT /product="hsa-miR-205-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0001378"
FT miRNA 71..91
FT /accession="MIMAT0009197"
FT /product="hsa-miR-205-3p"
FT /evidence=experimental
FT /experiment="454 [4]"
XX
SQ Sequence 110 BP; 28 A; 29 C; 24 G; 0 T; 29 other;
aaagauccuc agacaaucca ugugcuucuc uuguccuuca uuccaccgga gucugucuca 60
uacccaacca gauuucagug gagugaaguu caggaggcau ggagcugaca 110
//
ID hsa-mir-210 standard; RNA; HSA; 110 BP.
XX
AC MI0000286;
XX
DE Homo sapiens miR-210 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [5]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-210; hsa-miR-210.
DR HGNC; 31587; MIR210.
DR ENTREZGENE; 406992; MIR210.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. Its
CC expression was later verified in human BC-1 cells [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..49
FT /accession="MIMAT0026475"
FT /product="hsa-miR-210-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 66..87
FT /accession="MIMAT0000267"
FT /product="hsa-miR-210-3p"
FT /evidence=experimental
FT /experiment="cloned [2-4], Illumina [5]"
FT /similarity="MI0001379"
XX
SQ Sequence 110 BP; 16 A; 46 C; 34 G; 0 T; 14 other;
acccggcagu gccuccaggc gcagggcagc cccugcccac cgcacacugc gcugccccag 60
acccacugug cgugugacag cggcugaucu gugccugggc agcgcgaccc 110
//
ID hsa-mir-211 standard; RNA; HSA; 110 BP.
XX
AC MI0000287;
XX
DE Homo sapiens miR-211 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-211; hsa-miR-211.
DR HGNC; 31588; MIR211.
DR ENTREZGENE; 406993; MIR211.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. The
CC sequence maps to human chromosome 15.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..47
FT /accession="MIMAT0000268"
FT /product="hsa-miR-211-5p"
FT /evidence=not_experimental
FT /similarity="MI0001377"
FT miRNA 63..83
FT /accession="MIMAT0022694"
FT /product="hsa-miR-211-3p"
FT /evidence=not_experimental
XX
SQ Sequence 110 BP; 19 A; 32 C; 33 G; 0 T; 26 other;
ucaccuggcc augugacuug ugggcuuccc uuugucaucc uucgccuagg gcucugagca 60
gggcagggac agcaaagggg ugcucaguug ucacuuccca cagcacggag 110
//
ID hsa-mir-212 standard; RNA; HSA; 110 BP.
XX
AC MI0000288;
XX
DE Homo sapiens miR-212 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-212; hsa-miR-212.
DR HGNC; 31589; MIR212.
DR ENTREZGENE; 406994; MIR212.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the 5' end mapped by PCR. The 3' end
CC was not experimentally determined. The sequence maps to human chromosome
CC 17, but its expression has not been experimentally verified in human.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..53
FT /accession="MIMAT0022695"
FT /product="hsa-miR-212-5p"
FT /evidence=not_experimental
FT miRNA 71..91
FT /accession="MIMAT0000269"
FT /product="hsa-miR-212-3p"
FT /evidence=not_experimental
FT /similarity="MI0003385"
XX
SQ Sequence 110 BP; 15 A; 50 C; 31 G; 0 T; 14 other;
cggggcaccc cgcccggaca gcgcgccggc accuuggcuc uagacugcuu acugcccggg 60
ccgcccucag uaacagucuc cagucacggc caccgacgcc uggccccgcc 110
//
ID hsa-mir-181a-1 standard; RNA; HSA; 110 BP.
XX
AC MI0000289;
XX
DE Homo sapiens miR-181a-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [6]
RX PUBMED; 17989717.
RA Marton S, Garcia MR, Robello C, Persson H, Trajtenberg F, Pritsch O,
RA Rovira C, Naya H, Dighiero G, Cayota A;
RT "Small RNAs analysis in CLL reveals a deregulation of miRNA expression and
RT novel miRNA candidates of putative relevance in CLL pathogenesis";
RL Leukemia. 22:330-338(2008).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-181a; hsa-miR-181a.
DR HGNC; 31590; MIR181A1.
DR ENTREZGENE; 406995; MIR181A1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0000256"
FT /product="hsa-miR-181a-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4-6]"
FT miRNA 64..85
FT /accession="MIMAT0000270"
FT /product="hsa-miR-181a-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
FT /similarity="MI0001380"
XX
SQ Sequence 110 BP; 30 A; 24 C; 22 G; 0 T; 34 other;
ugaguuuuga gguugcuuca gugaacauuc aacgcugucg gugaguuugg aauuaaaauc 60
aaaaccaucg accguugauu guacccuaug gcuaaccauc aucuacucca 110
//
ID hsa-mir-214 standard; RNA; HSA; 110 BP.
XX
AC MI0000290;
XX
DE Homo sapiens miR-214 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 18230126.
RA Afanasyeva EA, Hotz-Wagenblatt A, Glatting KH, Westermann F;
RT "New miRNAs cloned from neuroblastoma";
RL BMC Genomics. 9:52(2008).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-214; hsa-miR-214.
DR HGNC; 31591; MIR214.
DR ENTREZGENE; 406996; MIR214.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. Landgraf
CC et al. confirm expression in human [2]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..51
FT /accession="MIMAT0004564"
FT /product="hsa-miR-214-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Northern [3]"
FT miRNA 71..92
FT /accession="MIMAT0000271"
FT /product="hsa-miR-214-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0001381"
XX
SQ Sequence 110 BP; 25 A; 34 C; 28 G; 0 T; 23 other;
ggccuggcug gacagaguug ucaugugucu gccugucuac acuugcugug cagaacaucc 60
gcucaccugu acagcaggca cagacaggca gucacaugac aacccagccu 110
//
ID hsa-mir-215 standard; RNA; HSA; 110 BP.
XX
AC MI0000291;
XX
DE Homo sapiens miR-215 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-215; hsa-miR-215.
DR HGNC; 31592; MIR215.
DR ENTREZGENE; 406997; MIR215.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the 5' end mapped by PCR. Landgraf
CC et al. confirm expression in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..47
FT /accession="MIMAT0000272"
FT /product="hsa-miR-215-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT miRNA 64..86
FT /accession="MIMAT0026476"
FT /product="hsa-miR-215-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 110 BP; 35 A; 18 C; 20 G; 0 T; 37 other;
aucauucaga aaugguauac aggaaaauga ccuaugaauu gacagacaau auagcugagu 60
uugucuguca uuucuuuagg ccaauauucu guaugacugu gcuacuucaa 110
//
ID hsa-mir-216a standard; RNA; HSA; 110 BP.
XX
AC MI0000292;
XX
DE Homo sapiens miR-216a stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 22282338.
RA Voellenkle C, Rooij Jv, Guffanti A, Brini E, Fasanaro P, Isaia E, Croft L,
RA David M, Capogrossi MC, Moles A, Felsani A, Martelli F;
RT "Deep-sequencing of endothelial cells exposed to hypoxia reveals the
RT complexity of known and novel microRNAs";
RL RNA. 18:472-484(2012).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-216; hsa-miR-216.
DR HGNC; 31593; MIR216A.
DR ENTREZGENE; 406998; MIR216A.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the 5' end mapped by PCR. The mature
CC sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0000273"
FT /product="hsa-miR-216a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT /similarity="MI0001382"
FT miRNA 58..79
FT /accession="MIMAT0022844"
FT /product="hsa-miR-216a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 110 BP; 27 A; 26 C; 26 G; 0 T; 31 other;
gauggcugug aguuggcuua aucucagcug gcaacuguga gauguucaua caaucccuca 60
caguggucuc ugggauuaug cuaaacagag caauuuccua gcccucacga 110
//
ID hsa-mir-217 standard; RNA; HSA; 110 BP.
XX
AC MI0000293;
XX
DE Homo sapiens miR-217 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-217; hsa-miR-217.
DR HGNC; 31594; MIR217.
DR ENTREZGENE; 406999; MIR217.
XX
FH Key Location/Qualifiers
FH
FT miRNA 35..57
FT /accession="MIMAT0000274"
FT /product="hsa-miR-217-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0001383"
FT miRNA 72..93
FT /accession="MIMAT0037308"
FT /product="hsa-miR-217-3p"
FT /evidence=not_experimental
XX
SQ Sequence 110 BP; 36 A; 21 C; 19 G; 0 T; 34 other;
aguauaauua uuacauaguu uuugaugucg cagauacugc aucaggaacu gauuggauaa 60
gaaucaguca ccaucaguuc cuaaugcauu gccuucagca ucuaaacaag 110
//
ID hsa-mir-218-1 standard; RNA; HSA; 110 BP.
XX
AC MI0000294;
XX
DE Homo sapiens miR-218-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-218; hsa-miR-218.
DR HGNC; 31595; MIR218-1.
DR ENTREZGENE; 407000; MIR218-1.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the 5' end mapped by PCR. Landgraf
CC et al. later verified the expression of miR-218 in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0000275"
FT /product="hsa-miR-218-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000958"
FT miRNA 68..89
FT /accession="MIMAT0004565"
FT /product="hsa-miR-218-1-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 110 BP; 28 A; 21 C; 28 G; 0 T; 33 other;
gugauaaugu agcgagauuu ucuguugugc uugaucuaac caugugguug cgagguauga 60
guaaaacaug guuccgucaa gcaccaugga acgucacgca gcuuucuaca 110
//
ID hsa-mir-218-2 standard; RNA; HSA; 110 BP.
XX
AC MI0000295;
XX
DE Homo sapiens miR-218-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-218; hsa-miR-218.
DR HGNC; 31596; MIR218-2.
DR ENTREZGENE; 407001; MIR218-2.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the 5' end mapped by PCR. Landgraf
CC et al. confirm expression in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0000275"
FT /product="hsa-miR-218-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000957"
FT miRNA 67..88
FT /accession="MIMAT0004566"
FT /product="hsa-miR-218-2-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 110 BP; 23 A; 29 C; 32 G; 0 T; 26 other;
gaccagucgc ugcggggcuu uccuuugugc uugaucuaac cauguggugg aacgauggaa 60
acggaacaug guucugucaa gcaccgcgga aagcaccgug cucuccugca 110
//
ID hsa-mir-219a-1 standard; RNA; HSA; 110 BP.
XX
AC MI0000296;
XX
DE Homo sapiens miR-219a-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-219; hsa-miR-219.
DR HGNC; 31597; MIR219-1.
DR ENTREZGENE; 407002; MIR219-1.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the 5' excised
CC miR has been validated in zebrafish, and the 5' end mapped by PCR [2]. The
CC mature products were later validated in human [3]. Two hairpin precursor
CC structures are predicted, mir-219-1 on chromosome 6 (MIR:MI0000296) and
CC mir-219-2 on chromosome 9 (MIR:MI0000740) [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0000276"
FT /product="hsa-miR-219a-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0001384"
FT miRNA 62..83
FT /accession="MIMAT0004567"
FT /product="hsa-miR-219a-1-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 110 BP; 17 A; 42 C; 33 G; 0 T; 18 other;
ccgccccggg ccgcggcucc ugauugucca aacgcaauuc ucgagucuau ggcuccggcc 60
gagaguugag ucuggacguc ccgagccgcc gcccccaaac cucgagcggg 110
//
ID hsa-mir-221 standard; RNA; HSA; 110 BP.
XX
AC MI0000298;
XX
DE Homo sapiens miR-221 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [5]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-221; hsa-miR-221.
DR HGNC; 31601; MIR221.
DR ENTREZGENE; 407006; MIR221.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and later validated in human HL-60
CC leukemia cells [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0004568"
FT /product="hsa-miR-221-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 65..87
FT /accession="MIMAT0000278"
FT /product="hsa-miR-221-3p"
FT /evidence=experimental
FT /experiment="cloned [2-4], Illumina [5]"
FT /similarity="MI0001387"
XX
SQ Sequence 110 BP; 25 A; 24 C; 28 G; 0 T; 33 other;
ugaacaucca ggucuggggc augaaccugg cauacaaugu agauuucugu guucguuagg 60
caacagcuac auugucugcu ggguuucagg cuaccuggaa acauguucuc 110
//
ID hsa-mir-222 standard; RNA; HSA; 110 BP.
XX
AC MI0000299;
XX
DE Homo sapiens miR-222 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-222; hsa-miR-222.
DR HGNC; 31602; MIR222.
DR ENTREZGENE; 407007; MIR222.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC was validated in zebrafish, and the ends mapped by cloning. Subsequent
CC cloning studies have also verified the expression of miR-222 in human ES
CC cells. The mature sequence shown here represents the most commonly cloned
CC form from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..52
FT /accession="MIMAT0004569"
FT /product="hsa-miR-222-5p"
FT /evidence=experimental
FT /experiment="cloned [4]"
FT miRNA 69..89
FT /accession="MIMAT0000279"
FT /product="hsa-miR-222-3p"
FT /evidence=experimental
FT /experiment="cloned [2-5], Northern [2]"
XX
SQ Sequence 110 BP; 21 A; 27 C; 29 G; 0 T; 33 other;
gcugcuggaa gguguaggua cccucaaugg cucaguagcc aguguagauc cugucuuucg 60
uaaucagcag cuacaucugg cuacuggguc ucugauggca ucuucuagcu 110
//
ID hsa-mir-223 standard; RNA; HSA; 110 BP.
XX
AC MI0000300;
XX
DE Homo sapiens miR-223 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-223; hsa-miR-223.
DR HGNC; 31603; MIR223.
DR ENTREZGENE; 407008; MIR223.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the 5' end mapped by PCR. Landgraf
CC et al. confirm expression in human [2]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..47
FT /accession="MIMAT0004570"
FT /product="hsa-miR-223-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 68..89
FT /accession="MIMAT0000280"
FT /product="hsa-miR-223-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0001389"
XX
SQ Sequence 110 BP; 23 A; 31 C; 28 G; 0 T; 28 other;
ccuggccucc ugcagugcca cgcuccgugu auuugacaag cugaguugga cacuccaugu 60
gguagagugu caguuuguca aauaccccaa gugcggcaca ugcuuaccag 110
//
ID hsa-mir-224 standard; RNA; HSA; 81 BP.
XX
AC MI0000301;
XX
DE Homo sapiens miR-224 stem-loop
XX
RN [1]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
RC Erratum RNA 9:631-632(2003).
XX
RN [2]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [5]
RX PUBMED; 19015728.
RA Tzur G, Levy A, Meiri E, Barad O, Spector Y, Bentwich Z, Mizrahi L,
RA Katzenellenbogen M, Ben-Shushan E, Reubinoff BE, Galun E;
RT "MicroRNA expression patterns and function in endodermal differentiation
RT of human embryonic stem cells";
RL PLoS One. 3:e3726(2008).
XX
RN [6]
RX PUBMED; 19144710.
RA Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G;
RT "Identification of novel Epstein-Barr virus microRNA genes from
RT nasopharyngeal carcinomas";
RL J Virol. 83:3333-3341(2009).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-224; hsa-miR-224.
DR HGNC; 31604; MIR224.
DR ENTREZGENE; 407009; MIR224.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..31
FT /accession="MIMAT0000281"
FT /product="hsa-miR-224-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4]"
FT miRNA 53..75
FT /accession="MIMAT0009198"
FT /product="hsa-miR-224-3p"
FT /evidence=experimental
FT /experiment="qRT-PCR [5], 454 [6]"
XX
SQ Sequence 81 BP; 19 A; 16 C; 20 G; 0 T; 26 other;
gggcuuucaa gucacuagug guuccguuua guagaugauu gugcauuguu ucaaaauggu 60
gcccuaguga cuacaaagcc c 81
//
ID cel-mir-124 standard; RNA; CEL; 96 BP.
XX
AC MI0000302;
XX
DE Caenorhabditis elegans miR-124 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; C29E6/8322-8417; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..40
FT /accession="MIMAT0015111"
FT /product="cel-miR-124-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [5]"
FT miRNA 61..81
FT /accession="MIMAT0000282"
FT /product="cel-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], 454 [3], Illumina
FT [4], CLIPseq [5]"
XX
SQ Sequence 96 BP; 21 A; 26 C; 25 G; 0 T; 24 other;
gucccacuug ucaucuggca ugcacccuag ugacuuuagu ggacaucuaa gucuuccaac 60
uaaggcacgc ggugaaugcc acguggccau gauggg 96
//
ID cel-mir-228 standard; RNA; CEL; 98 BP.
XX
AC MI0000303;
XX
DE Caenorhabditis elegans miR-228 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; T12E12/23964-24061; .
XX
CC This precursor sequence was predicted by comparative computational
CC approaches [1,2]. Northern blotting confirmed that the strand containing
CC the predicted miR is predominantly expressed, and the 5' and 3' ends were
CC confirmed later [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000283"
FT /product="cel-miR-228-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1,3], PCR [3], 454 [4],
FT Illumina [5,7], CLIPseq [6]"
FT miRNA 58..79
FT /accession="MIMAT0020327"
FT /product="cel-miR-228-3p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
XX
SQ Sequence 98 BP; 26 A; 25 C; 25 G; 0 T; 22 other;
ccuuaucccg uucgcaaugg cacugcauga auucacggcu augcauaacg acagaccgcg 60
gaucauacgg uaccauagcg gacggugaug agguuaau 98
//
ID cel-mir-229 standard; RNA; CEL; 115 BP.
XX
AC MI0000304;
XX
DE Caenorhabditis elegans miR-229 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
CC The extents of the dominant mature miRNA species are adjusted here in
CC accordance with a large scale cloning and sequencing study [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..33
FT /accession="MIMAT0000284"
FT /product="cel-miR-229-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], 454 [3], Illumina
FT [4], CLIPseq [5]"
FT miRNA 88..109
FT /accession="MIMAT0015112"
FT /product="cel-miR-229-3p"
FT /evidence=experimental
FT /experiment="CLIPseq [5]"
XX
SQ Sequence 115 BP; 26 A; 27 C; 31 G; 0 T; 31 other;
cgccggcaau gacacugguu aucuuuucca ucguggaaug ccccccauug auuuuuuccc 60
cuuuucgggg ggaaaaaauu ggaaacgaga aagguaucgg gugucauagc cggcg 115
//
ID cel-mir-230 standard; RNA; CEL; 98 BP.
XX
AC MI0000305;
XX
DE Caenorhabditis elegans miR-230 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; F46G11/21083-21180; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0015113"
FT /product="cel-miR-230-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [5]"
FT miRNA 61..83
FT /accession="MIMAT0000285"
FT /product="cel-miR-230-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], 454 [3], Illumina
FT [4], CLIPseq [5]"
XX
SQ Sequence 98 BP; 27 A; 14 C; 24 G; 0 T; 33 other;
uugauguaau gccgucacuu ggucggcgau uuaauauuau cagaacauag gaaauuguua 60
guauuaguug ugcgaccagg agacgguauu cgcauauu 98
//
ID cel-mir-231 standard; RNA; CEL; 99 BP.
XX
AC MI0000306;
XX
DE Caenorhabditis elegans miR-231 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; R13A5/6444-6346; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0020328"
FT /product="cel-miR-231-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 61..84
FT /accession="MIMAT0000286"
FT /product="cel-miR-231-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], 454 [3], Illumina
FT [4,6], CLIPseq [5]"
XX
SQ Sequence 99 BP; 32 A; 18 C; 19 G; 0 T; 30 other;
uagcaccaca gguuguucug acuguuucaa aagcuuguag uaucuuaaua aauaaacaua 60
uaagcucgug aucaacaggc agaacaacuc gguuuugug 99
//
ID cel-mir-232 standard; RNA; CEL; 98 BP.
XX
AC MI0000307;
XX
DE Caenorhabditis elegans miR-232 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F13H10/3269-3172; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0020777"
FT /product="cel-miR-232-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 61..83
FT /accession="MIMAT0000287"
FT /product="cel-miR-232-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], 454 [3], Illumina
FT [4,6], CLIPseq [5]"
XX
SQ Sequence 98 BP; 28 A; 16 C; 18 G; 0 T; 36 other;
aaguucaauu uuuggauccc ugcaguuucg augauuuuau ccuuaauucu gaagauguga 60
uaaaugcauc uuaacugcgg ugaucuagau caugaaca 98
//
ID cel-mir-233 standard; RNA; CEL; 98 BP.
XX
AC MI0000308;
XX
DE Caenorhabditis elegans miR-233 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; W03G11/505-408; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0020329"
FT /product="cel-miR-233-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 61..83
FT /accession="MIMAT0000288"
FT /product="cel-miR-233-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], 454 [3], Illumina
FT [4,6], CLIPseq [5]"
XX
SQ Sequence 98 BP; 24 A; 24 C; 21 G; 0 T; 29 other;
auauagcauc uuucugucuc gcccaucccg uugcuccaau auucuaacaa caagugauua 60
uugagcaaug cgcaugugcg ggauagacug auggcugc 98
//
ID cel-mir-234 standard; RNA; CEL; 96 BP.
XX
AC MI0000309;
XX
DE Caenorhabditis elegans miR-234 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; C13B4/1971-1876; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0020330"
FT /product="cel-miR-234-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 61..81
FT /accession="MIMAT0000289"
FT /product="cel-miR-234-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], 454 [3], Illumina
FT [4,6], CLIPseq [5]"
XX
SQ Sequence 96 BP; 34 A; 18 C; 16 G; 0 T; 28 other;
caaaaaauga ucaaacggua uuccagaguu gauaauaaaa augcgucagu ccgcaaucua 60
uuauugcucg agaauacccu uugacuacua ugugua 96
//
ID cel-mir-235 standard; RNA; CEL; 97 BP.
XX
AC MI0000310;
XX
DE Caenorhabditis elegans miR-235 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; T09B4/12737-12641; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0020331"
FT /product="cel-miR-235-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 61..82
FT /accession="MIMAT0000290"
FT /product="cel-miR-235-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], 454 [3], Illumina
FT [4,6], CLIPseq [5]"
XX
SQ Sequence 97 BP; 27 A; 22 C; 23 G; 0 T; 25 other;
uccgaagaua ucaggaucag gccuuggcug auugcaaaau uguucaccgu gaaaauuaaa 60
uauugcacuc uccccggccu gaucugagag uaaggcg 97
//
ID cel-mir-236 standard; RNA; CEL; 98 BP.
XX
AC MI0000311;
XX
DE Caenorhabditis elegans miR-236 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
RN [4]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [5]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [6]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [7]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; C52E12/37215-37118; .
XX
CC This precursor sequence was predicted by comparative computational
CC approaches [1,3]. The excised miRNA sequence was predicted to comprise
CC bases 64 to 87, and the precise 5' and 3' ends were determined later [4].
CC Northern blotting confirmed that the strand containing the predicted miR
CC is predominantly expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..42
FT /accession="MIMAT0020332"
FT /product="cel-miR-236-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 61..83
FT /accession="MIMAT0000291"
FT /product="cel-miR-236-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4], Northern [1,3], PCR [3],
FT Illumina [5,7], CLIPseq [6]"
XX
SQ Sequence 98 BP; 26 A; 20 C; 21 G; 0 T; 31 other;
ucggugaccg auguccagcg ucuuaccugu ucaauauuua gacugacuau caaagagauc 60
uaauacuguc agguaaugac gcuggauugu caugucau 98
//
ID cel-mir-237 standard; RNA; CEL; 99 BP.
XX
AC MI0000312;
XX
DE Caenorhabditis elegans miR-237 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F22F1/5536-5634; .
XX
CC The sequence is reported to be related to lin-4 [2]. The extents of the
CC dominant mature miRNA species are adjusted here in accordance with a large
CC scale cloning and sequencing study [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000292"
FT /product="cel-miR-237-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], Illumina [4,6],
FT CLIPseq [5]"
FT miRNA 53..74
FT /accession="MIMAT0020333"
FT /product="cel-miR-237-3p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
XX
SQ Sequence 99 BP; 29 A; 21 C; 22 G; 0 T; 27 other;
uucuacauug cguggucccu gagaauucuc gaacagcuuc aaaguguuca agcugucgag 60
uuuugucaag gaccaaacaa uagaagauca cuugggaac 99
//
ID cel-mir-238 standard; RNA; CEL; 98 BP.
XX
AC MI0000313;
XX
DE Caenorhabditis elegans miR-238 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; K01F9/3114-3017; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0015114"
FT /product="cel-miR-238-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [5]"
FT miRNA 61..83
FT /accession="MIMAT0000293"
FT /product="cel-miR-238-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], Illumina [4],
FT CLIPseq [5]"
XX
SQ Sequence 98 BP; 24 A; 22 C; 20 G; 0 T; 32 other;
ucuccauuga cuguuuggau guucucggac guucaaagcu acauccaaca aauugguagc 60
uuuguacucc gaugccauuc agauaguuau gagccaug 98
//
ID cel-mir-239a standard; RNA; CEL; 98 BP.
XX
AC MI0000314;
XX
DE Caenorhabditis elegans miR-239a stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; C34E11/1222-1319; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000294"
FT /product="cel-miR-239a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], Illumina [4,6],
FT CLIPseq [5]"
FT miRNA 59..80
FT /accession="MIMAT0020334"
FT /product="cel-miR-239a-3p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
XX
SQ Sequence 98 BP; 27 A; 17 C; 18 G; 0 T; 36 other;
uacacguuug caauuuuugu acuacacaua gguacuggac aauuuucaaa auauauccag 60
ugucuagucu agugcaaaca uugcucggug uuguuuga 98
//
ID cel-mir-239b standard; RNA; CEL; 98 BP.
XX
AC MI0000315;
XX
DE Caenorhabditis elegans miR-239b stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 15317971.
RA Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB;
RT "Patterns of flanking sequence conservation and a characteristic upstream
RT motif for microRNA gene identification";
RL RNA. 10:1309-1322(2004).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; C34E11/176-79; .
XX
CC miR-239b was predicted by computational analysis and conservation in C.
CC elegans and C. briggsae, and the microRNA confirmed by PCR amplification,
CC cloning and sequencing [1]. A large scale cloning and sequencing study
CC finds two dominant mature miRNA products: the second is 1 nt shorter at
CC the 5' end [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000295"
FT /product="cel-miR-239b-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4], CLIPseq [5]"
FT /similarity="MI0000314"
FT miRNA 58..79
FT /accession="MIMAT0015115"
FT /product="cel-miR-239b-3p"
FT /evidence=experimental
FT /experiment="CLIPseq [5]"
XX
SQ Sequence 98 BP; 27 A; 16 C; 22 G; 0 T; 33 other;
gcgacagaug caauuuuugu acuacacaaa aguacugguc auuuaaguug aggcucagca 60
cuuuuguggu gugcaaaaau ggcaaguugc uuuuaucu 98
//
ID cel-mir-240 standard; RNA; CEL; 97 BP.
XX
AC MI0000316;
XX
DE Caenorhabditis elegans miR-240 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [5]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; C39D10/9215-9311; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0015116"
FT /product="cel-miR-240-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [4], Illumina [5]"
FT miRNA 61..82
FT /accession="MIMAT0000296"
FT /product="cel-miR-240-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3,5],
FT CLIPseq [4]"
XX
SQ Sequence 97 BP; 30 A; 18 C; 17 G; 0 T; 32 other;
uuguuagaaa cuuuuucaaa ucgaggauuu ugagacuaga augcuugaau uguacuagca 60
uacuggcccc caaaucuucg cuuagaaaua caguuca 97
//
ID cel-mir-241 standard; RNA; CEL; 96 BP.
XX
AC MI0000317;
XX
DE Caenorhabditis elegans miR-241 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [5]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F56A12/7696-7601; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0000297"
FT /product="cel-miR-241-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3,5],
FT CLIPseq [4]"
FT miRNA 60..81
FT /accession="MIMAT0020335"
FT /product="cel-miR-241-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 96 BP; 22 A; 19 C; 28 G; 0 T; 27 other;
cggggguguc aaaguugagg uaggugcgag aaaugacggc auccauauag uaaucguuca 60
uugucucuca gcugcuucau cugugacaug gcuacg 96
//
ID cel-mir-242 standard; RNA; CEL; 96 BP.
XX
AC MI0000318;
XX
DE Caenorhabditis elegans miR-242 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; F36A4/35587-35682; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0000298"
FT /product="cel-miR-242"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3],
FT CLIPseq [4]"
XX
SQ Sequence 96 BP; 25 A; 25 C; 23 G; 0 T; 23 other;
uggcucgcga gaguauugcg uaggccuuug cuucgagaga gaagcuucag uucgcagcaa 60
uauccuccgc aaaacuuucc ccggcuaugc aaaaaa 96
//
ID cel-mir-243 standard; RNA; CEL; 98 BP.
XX
AC MI0000319;
XX
DE Caenorhabditis elegans miR-243 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; R08C7/29717-29814; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..38
FT /accession="MIMAT0015117"
FT /product="cel-miR-243-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [4]"
FT miRNA 61..83
FT /accession="MIMAT0000299"
FT /product="cel-miR-243-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3],
FT CLIPseq [4]"
XX
SQ Sequence 98 BP; 22 A; 23 C; 27 G; 0 T; 26 other;
uguucacgca uaagccugau aucucggugc gaucguaccg uaucgcucac acuuagauua 60
cgguacgauc gcggcgggau aucagguacg ugauugga 98
//
ID cel-mir-244 standard; RNA; CEL; 99 BP.
XX
AC MI0000320;
XX
DE Caenorhabditis elegans miR-244 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; T04D1/15168-15070; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0000300"
FT /product="cel-miR-244-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3],
FT CLIPseq [4]"
FT miRNA 58..78
FT /accession="MIMAT0015118"
FT /product="cel-miR-244-3p"
FT /evidence=experimental
FT /experiment="CLIPseq [4]"
XX
SQ Sequence 99 BP; 26 A; 18 C; 19 G; 0 T; 36 other;
cuccauaucu caaucucuuu gguuguacaa agugguaugg cucaucgaau aagcacauac 60
ugcuuuucag cuaaaggaau ugagauuuug uaggcuuuu 99
//
ID cel-mir-245 standard; RNA; CEL; 97 BP.
XX
AC MI0000321;
XX
DE Caenorhabditis elegans miR-245 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [5]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F55D12/9021-9117; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0020336"
FT /product="cel-miR-245-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 61..82
FT /accession="MIMAT0000301"
FT /product="cel-miR-245-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3,5],
FT CLIPseq [4]"
XX
SQ Sequence 97 BP; 22 A; 18 C; 19 G; 0 T; 38 other;
cugaauucaa uguuggagag cuauuugcaa gguaccuaau uguuugauua uugauucuca 60
auuggucccc uccaaguagc ucuauugcau uguuugc 97
//
ID cel-mir-246 standard; RNA; CEL; 97 BP.
XX
AC MI0000322;
XX
DE Caenorhabditis elegans miR-246 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [5]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; ZK593/30340-30436; .
XX
CC The extents of the dominant mature miRNA species are adjusted here in
CC accordance with a large scale cloning and sequencing study [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0020337"
FT /product="cel-miR-246-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 61..81
FT /accession="MIMAT0000302"
FT /product="cel-miR-246-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3,5],
FT CLIPseq [4]"
XX
SQ Sequence 97 BP; 31 A; 17 C; 18 G; 0 T; 31 other;
aucugaauua uaaaacaucg ccuaaccguu gucauguaau auuucccaga gaaaaugaua 60
uuacauguuu cggguaggag cuguucaaac uuuggac 97
//
ID cel-mir-247 standard; RNA; CEL; 98 BP.
XX
AC MI0000323;
XX
DE Caenorhabditis elegans miR-247 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; C39E6/17993-18090; .
XX
CC The extents of the dominant mature miRNA species are adjusted here in
CC accordance with a large scale cloning and sequencing study [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0015119"
FT /product="cel-miR-247-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [4]"
FT miRNA 61..82
FT /accession="MIMAT0000303"
FT /product="cel-miR-247-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3],
FT CLIPseq [4]"
XX
SQ Sequence 98 BP; 30 A; 20 C; 18 G; 0 T; 30 other;
auuaccagcu auuuuccaag uagagaaaag uuucuaauua cccaucaugc acaaaugugg 60
ugacuagagc cuauucucuu cuuggaaaag uggcgacu 98
//
ID cel-mir-248 standard; RNA; CEL; 98 BP.
XX
AC MI0000324;
XX
DE Caenorhabditis elegans miR-248 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; AH9/20339-20242; .
XX
CC The extents of the dominant mature miRNA species are adjusted here in
CC accordance with a large scale cloning and sequencing study [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 60..83
FT /accession="MIMAT0000304"
FT /product="cel-miR-248"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3],
FT CLIPseq [4]"
XX
SQ Sequence 98 BP; 22 A; 25 C; 21 G; 0 T; 30 other;
uuucccggcu gcaacuacgg uaagcgguau ccagccgaug uuuucaauac ugcauuugaa 60
uacacgugca cggauaacgc ucauuguuuu ucgcaugc 98
//
ID cel-mir-249 standard; RNA; CEL; 97 BP.
XX
AC MI0000325;
XX
DE Caenorhabditis elegans miR-249 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; Y48D7A/300-204; .
XX
CC The extents of the dominant mature miRNA species are adjusted here in
CC accordance with a large scale cloning and sequencing study [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..40
FT /accession="MIMAT0020338"
FT /product="cel-miR-249-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 61..83
FT /accession="MIMAT0000305"
FT /product="cel-miR-249-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 97 BP; 29 A; 22 C; 22 G; 0 T; 24 other;
auacucuuga acgacuagca acgcacaaac gucuucugug cgacaacauc ugaauguuug 60
ucacaggacu uuugagcguu gccagucgaa agaggaa 97
//
ID cel-mir-250 standard; RNA; CEL; 99 BP.
XX
AC MI0000326;
XX
DE Caenorhabditis elegans miR-250 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [5]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F55A11/6590-6492; .
XX
CC The extents of the dominant mature miRNA species are adjusted here in
CC accordance with a large scale cloning and sequencing study [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0020339"
FT /product="cel-miR-250-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 60..79
FT /accession="MIMAT0000306"
FT /product="cel-miR-250-3p"
FT /evidence=experimental
FT /experiment="Northern [1-2], PCR [1], Illumina [3,5],
FT CLIPseq [4]"
XX
SQ Sequence 99 BP; 24 A; 28 C; 22 G; 0 T; 25 other;
agggucuucg gaccacgccu ucaguugccu cgugauccgc caaacacaau aaauggacga 60
aucacaguca acuguuggca uggugcucgu acccauuuu 99
//
ID cel-mir-251 standard; RNA; CEL; 97 BP.
XX
AC MI0000327;
XX
DE Caenorhabditis elegans miR-251 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
DR WORMBASE; F59F3/28031-28127; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0000307"
FT /product="cel-miR-251"
FT /evidence=experimental
FT /experiment="Northern [1-2], PCR [1], Illumina [3],
FT CLIPseq [4]"
XX
SQ Sequence 97 BP; 30 A; 14 C; 19 G; 0 T; 34 other;
acuuucaaug accccuuguu aaguaguggu gccgcucuua uuagguugaa aaguaauaag 60
aguaguucac uacuuaucaa ggugaaauuu gaaauuu 97
//
ID cel-mir-252 standard; RNA; CEL; 98 BP.
XX
AC MI0000328;
XX
DE Caenorhabditis elegans miR-252 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [5]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; W02B12/2049-1952; .
XX
CC The extents of the dominant mature miRNA species are adjusted here in
CC accordance with a large scale cloning and sequencing study [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..43
FT /accession="MIMAT0000308"
FT /product="cel-miR-252-5p"
FT /evidence=experimental
FT /experiment="Northern [1-2], PCR [1], Illumina [3,5],
FT CLIPseq [4]"
FT miRNA 60..78
FT /accession="MIMAT0020340"
FT /product="cel-miR-252-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 98 BP; 26 A; 21 C; 21 G; 0 T; 30 other;
uccagggguc ucuuucaguu auaaguagua gugccgcagg uaaccgccag ucuaaaaggc 60
uuaccuacug ccuucugcuu aaaauugaaa uauugaug 98
//
ID cel-mir-253 standard; RNA; CEL; 107 BP.
XX
AC MI0000329;
XX
DE Caenorhabditis elegans miR-253 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [5]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F44E7/10412-10306; .
XX
CC A mature miRNA product from the 5' arm of this hairpin precursor was first
CC identified [1]. A later large scale cloning and sequencing study
CC identified a 3' product and showed it to be the dominant mature miRNA [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0000309"
FT /product="cel-miR-253-5p"
FT /evidence=experimental
FT /experiment="Northern [1], PCR [1], CLIPseq [4], Illumina
FT [5]"
FT miRNA 64..85
FT /accession="MIMAT0004215"
FT /product="cel-miR-253-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3,5], CLIPseq [4]"
XX
SQ Sequence 107 BP; 24 A; 28 C; 28 G; 0 T; 27 other;
gaauuguucc gaucgccgcu cuuuucacac accucacuaa cacugaccac cgaugcauag 60
auguuaguag gcguuguggg aagggcggcg acagugaacg ucguuuc 107
//
ID cel-mir-254 standard; RNA; CEL; 100 BP.
XX
AC MI0000330;
XX
DE Caenorhabditis elegans miR-254 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
DR WORMBASE; ZK455/13690-13591; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0031891"
FT /product="cel-miR-254-5p"
FT /evidence=experimental
FT /experiment="454 [2]"
FT miRNA 59..75
FT /accession="MIMAT0000310"
FT /product="cel-miR-254-3p"
FT /evidence=experimental
FT /experiment="Northern [1-2], PCR [1], Illumina [3]"
XX
SQ Sequence 100 BP; 26 A; 23 C; 22 G; 0 T; 29 other;
acuaugcaua uugccgccua cagaagcaua gauuuccaca aaccauucga gguguuugug 60
caaaucuuuc gcgacuguag gcggcgaaca ugcaguuuuu 100
//
ID cel-mir-255 standard; RNA; CEL; 110 BP.
XX
AC MI0000331;
XX
DE Caenorhabditis elegans miR-255 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [5]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F08F3/31040-31149; .
XX
CC This precursor sequence was identified computationally using sequence
CC homology with C. briggsae [1]. The mature microRNA was identified later
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0020341"
FT /product="cel-miR-255-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 62..83
FT /accession="MIMAT0004216"
FT /product="cel-miR-255-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3,5], CLIPseq [4]"
XX
SQ Sequence 110 BP; 34 A; 15 C; 22 G; 0 T; 39 other;
cagugguucg acuaaauuuu ggagguaaga aaucuuugua guucuccgua uugugacgug 60
aaaacugaag agauuuuuua cagacuucac aaauuugaaa uauauuccug 110
//
ID cel-mir-256 standard; RNA; CEL; 101 BP.
XX
AC MI0000333;
XX
DE Caenorhabditis elegans miR-256 stem-loop
XX
RN [1]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [2]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
DR WORMBASE; T07H8/6428-6328; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 66..86
FT /accession="MIMAT0000311"
FT /product="cel-miR-256"
FT /evidence=experimental
FT /experiment="Northern [2]"
XX
SQ Sequence 101 BP; 30 A; 20 C; 30 G; 0 T; 21 other;
gcaaggagug cagaggcuua cuaugagacg gucaagaggc gccuccguca cguggauacg 60
ucggguggaa ugcauagaag acuguacuca aaaaauuuua c 101
//
ID cel-mir-259 standard; RNA; CEL; 101 BP.
XX
AC MI0000336;
XX
DE Caenorhabditis elegans miR-259 stem-loop
XX
RN [1]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
RN [2]
RX PUBMED; 15317971.
RA Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB;
RT "Patterns of flanking sequence conservation and a characteristic upstream
RT motif for microRNA gene identification";
RL RNA. 10:1309-1322(2004).
XX
RN [3]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [4]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [5]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [6]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
DR WORMBASE; F25D1/9529-9429; .
XX
CC miR-259 was predicted by computational analysis and conservation in C.
CC elegans and C. briggsae, and the microRNA confirmed by PCR amplification,
CC cloning and sequencing [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..42
FT /accession="MIMAT0000314"
FT /product="cel-miR-259-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4,6], CLIPseq [5]"
FT miRNA 57..80
FT /accession="MIMAT0020342"
FT /product="cel-miR-259-3p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
XX
SQ Sequence 101 BP; 26 A; 20 C; 19 G; 0 T; 36 other;
ucagucauug aaacgaguaa aucucauccu aaucugguag caucuuucga accuugccac 60
cgauuuggca ugggauugac uuguuaaaua gugacuuuuu u 101
//
ID cel-mir-261 standard; RNA; CEL; 99 BP.
XX
AC MI0000338;
XX
DE Caenorhabditis elegans miR-261 stem-loop
XX
RN [1]
RX PUBMED; 12747828.
RA Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D;
RT "MicroRNAs and other tiny endogenous RNAs in C. elegans";
RL Curr Biol. 13:807-818(2003).
XX
DR WORMBASE; B0034/25192-25290; .
XX
FH Key Location/Qualifiers
FH
FT miRNA 66..84
FT /accession="MIMAT0000316"
FT /product="cel-miR-261"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 99 BP; 28 A; 13 C; 21 G; 0 T; 37 other;
ugauggcuuu ucuggauuug uucccuucac guguagaaag aaacgagcaa aaaaaaucuu 60
aguguuagcu uuuuaguuuu cacggugaau auggauauu 99
//
ID hsa-mir-200b standard; RNA; HSA; 95 BP.
XX
AC MI0000342;
XX
DE Homo sapiens miR-200b stem-loop
XX
RN [1]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-200b; hsa-miR-200b.
DR HGNC; 31579; MIR200B.
DR ENTREZGENE; 406984; MIR200B.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0004571"
FT /product="hsa-miR-200b-5p"
FT /evidence=experimental
FT /experiment="cloned [4]"
FT miRNA 57..78
FT /accession="MIMAT0000318"
FT /product="hsa-miR-200b-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2-5]"
XX
SQ Sequence 95 BP; 18 A; 26 C; 31 G; 0 T; 20 other;
ccagcucggg cagccguggc caucuuacug ggcagcauug gauggaguca ggucucuaau 60
acugccuggu aaugaugacg gcggagcccu gcacg 95
//
ID dme-mir-263a standard; RNA; DME; 94 BP.
XX
AC MI0000343;
XX
DE Drosophila melanogaster miR-263a stem-loop
XX
RN [1]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
RN [2]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-263a; miR-263a.
DR TARGETS:PICTAR-FLY; dme-miR-263a; dme-miR-263a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..41
FT /accession="MIMAT0000319"
FT /product="dme-miR-263a-5p"
FT /evidence=experimental
FT /experiment="Northern [1], 454 [3-4], Illumina [4]"
FT /similarity="MI0000343"
FT miRNA 59..80
FT /accession="MIMAT0020799"
FT /product="dme-miR-263a-3p"
FT /evidence=not_experimental
XX
SQ Sequence 94 BP; 27 A; 17 C; 23 G; 0 T; 27 other;
uagaucucgg cacaguuaau ggcacuggaa gaauucacgg gguaauuuuu auacaacccg 60
ugaucucuua guggcaucua uggugcgaga auaa 94
//
ID cel-mir-264 standard; RNA; CEL; 93 BP.
XX
AC MI0000344;
XX
DE Caenorhabditis elegans miR-264 stem-loop
XX
RN [1]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
CC This precursor sequence was predicted by comparative computational
CC approaches. The excised miRNA sequence is predicted and the precise 5'
CC or 3' end unknown. A PCR amplification protocol confirmed that the
CC strand containing the predicted miR is predominantly expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 60..79
FT /accession="MIMAT0000320"
FT /product="cel-miR-264"
FT /evidence=experimental
FT /experiment="PCR [1]"
XX
SQ Sequence 93 BP; 15 A; 23 C; 31 G; 0 T; 24 other;
uggcggcggu cgacauguac auaucaccag ucuggcuuuu cccguuuccg cgagcaagcg 60
gcgggugguu guuguuaugg gauaccggag cca 93
//
ID cel-mir-265 standard; RNA; CEL; 86 BP.
XX
AC MI0000345;
XX
DE Caenorhabditis elegans miR-265 stem-loop
XX
RN [1]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
CC This precursor sequence was predicted by comparative computational
CC approaches. The excised miRNA sequence is predicted and the precise 5'
CC or 3' end unknown. A PCR amplification protocol confirmed that the
CC strand containing the predicted miR is predominantly expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 60..79
FT /accession="MIMAT0000321"
FT /product="cel-miR-265"
FT /evidence=experimental
FT /experiment="PCR [1]"
XX
SQ Sequence 86 BP; 14 A; 18 C; 25 G; 0 T; 29 other;
gguuugacuu acccccuccu uccgcuggcc gccguuuuua uuaugaacuu gaugugguuu 60
gagggaggaa gggugguauu ugaacc 86
//
ID cel-mir-266 standard; RNA; CEL; 94 BP.
XX
AC MI0000346;
XX
DE Caenorhabditis elegans miR-266 stem-loop
XX
RN [1]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
RN [2]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
CC This precursor sequence was predicted by comparative computational
CC approaches. The excised miRNA sequence is predicted and the precise 5'
CC or 3' end unknown. A PCR amplification protocol confirmed that the
CC strand containing the predicted miR is predominantly expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..42
FT /accession="MIMAT0000322"
FT /product="cel-miR-266"
FT /evidence=experimental
FT /experiment="PCR [1], Illumina [2]"
XX
SQ Sequence 94 BP; 28 A; 21 C; 18 G; 0 T; 27 other;
ugucuaaacu ugggcaaaag uuaggcaaga cuuuggcaaa gcuugaaucc aaguuuugcc 60
aaaguuuugc ccaacuuuug cccaaauuca gcca 94
//
ID cel-mir-267 standard; RNA; CEL; 93 BP.
XX
AC MI0000347;
XX
DE Caenorhabditis elegans miR-267 stem-loop
XX
RN [1]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
CC This precursor sequence was predicted by comparative computational
CC approaches. The excised miRNA sequence is predicted and the precise 5'
CC or 3' end unknown. A PCR amplification protocol confirmed that the
CC strand containing the predicted miR is predominantly expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..35
FT /accession="MIMAT0000323"
FT /product="cel-miR-267"
FT /evidence=experimental
FT /experiment="PCR [1]"
XX
SQ Sequence 93 BP; 27 A; 18 C; 18 G; 0 T; 30 other;
uaaaaguuuc aaaaccccgu gaagugucug cugcaaucua aauuuuuaga uauagaugca 60
gucgacucuu cauuggguuu ucaggaaccc gua 93
//
ID cel-mir-268 standard; RNA; CEL; 95 BP.
XX
AC MI0000348;
XX
DE Caenorhabditis elegans miR-268 stem-loop
XX
RN [1]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
CC This precursor sequence was predicted by comparative computational
CC approaches. The excised miRNA sequence is predicted and the precise 5'
CC or 3' end unknown. A PCR amplification protocol confirmed that the
CC strand containing the predicted miR is predominantly expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..41
FT /accession="MIMAT0000324"
FT /product="cel-miR-268"
FT /evidence=experimental
FT /experiment="PCR [1]"
XX
SQ Sequence 95 BP; 19 A; 19 C; 21 G; 0 T; 36 other;
ggaaguggcu uugaagcggc aagaauuaga agcaguuugg ugucagacac acuacucacu 60
cacugcuucu uguuuuuucu gcuuucuuug cuuuu 95
//
ID cel-mir-269 standard; RNA; CEL; 94 BP.
XX
AC MI0000349;
XX
DE Caenorhabditis elegans miR-269 stem-loop
XX
RN [1]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
CC This precursor sequence was predicted by comparative computational
CC approaches. The excised miRNA sequence is predicted and the precise 5'
CC or 3' end unknown. A PCR amplification protocol confirmed that the
CC strand containing the predicted miR is predominantly expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..32
FT /accession="MIMAT0000325"
FT /product="cel-miR-269"
FT /evidence=experimental
FT /experiment="PCR [1]"
XX
SQ Sequence 94 BP; 26 A; 21 C; 20 G; 0 T; 27 other;
gggcaaaagu ugggcaagac ucuggcaaaa cuuggauuua ugcugcgcca aaguuuaacc 60
caaguuugac ccaacucuug ucaaauuuuu gucc 94
//
ID cel-mir-270 standard; RNA; CEL; 95 BP.
XX
AC MI0000350;
XX
DE Caenorhabditis elegans miR-270 stem-loop
XX
RN [1]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
CC This sequence was predicted by computational approaches and validated
CC using a PCR amplification protocol.
XX
FH Key Location/Qualifiers
FH
FT miRNA 64..83
FT /accession="MIMAT0000326"
FT /product="cel-miR-270"
FT /evidence=experimental
FT /experiment="PCR [1]"
XX
SQ Sequence 95 BP; 20 A; 26 C; 26 G; 0 T; 23 other;
gucgcuagcc ucuuuaccug ccuacacacc uuucugccua cguggcacau ugguaggcaa 60
gagggcauga uguagcagug gagauggacu gccac 95
//
ID cel-mir-271 standard; RNA; CEL; 94 BP.
XX
AC MI0000351;
XX
DE Caenorhabditis elegans miR-271 stem-loop
XX
RN [1]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
CC This sequence was predicted by computational approaches and validated
CC using a PCR amplification protocol.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..43
FT /accession="MIMAT0000327"
FT /product="cel-miR-271"
FT /evidence=experimental
FT /experiment="PCR [1]"
XX
SQ Sequence 94 BP; 23 A; 27 C; 25 G; 0 T; 19 other;
aauagaaaac ggggcccgcc ggcucgccgg guggaaagca uucgacagca agacguguuu 60
uucaaucugc gacucggcga uucccaucau cacu 94
//
ID cel-mir-272 standard; RNA; CEL; 95 BP.
XX
AC MI0000352;
XX
DE Caenorhabditis elegans miR-272 stem-loop
XX
RN [1]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
RN [2]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
CC This sequence was predicted by computational approaches and validated
CC using a PCR amplification protocol.
XX
FH Key Location/Qualifiers
FH
FT miRNA 67..84
FT /accession="MIMAT0000328"
FT /product="cel-miR-272"
FT /evidence=experimental
FT /experiment="PCR [1], Illumina [2]"
XX
SQ Sequence 95 BP; 20 A; 18 C; 38 G; 0 T; 19 other;
cgcaggcacg ugcagguaug uaggcaggcg uaggcccgua ggcaagugua ggucugcagg 60
caugaaugua ggcaugggug uuuggaagac cugcg 95
//
ID cel-mir-273 standard; RNA; CEL; 94 BP.
XX
AC MI0000353;
XX
DE Caenorhabditis elegans miR-273 stem-loop
XX
RN [1]
RX PUBMED; 12769849.
RA Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J;
RT "Computational and experimental identification of C. elegans microRNAs";
RL Mol Cell. 11:1253-1263(2003).
XX
CC This sequence was predicted by computational approaches and validated
CC using a PCR amplification protocol.
XX
FH Key Location/Qualifiers
FH
FT miRNA 59..78
FT /accession="MIMAT0000329"
FT /product="cel-miR-273"
FT /evidence=experimental
FT /experiment="PCR [1]"
XX
SQ Sequence 94 BP; 17 A; 19 C; 24 G; 0 T; 34 other;
accucguuuu gggagcagcc ggcauuuuac gggcuacacu uuuuuuaaaa uugaugugug 60
cccguacugu gucggcugcu uugaaaauuu cggu 94
//
ID dme-mir-184 standard; RNA; DME; 100 BP.
XX
AC MI0000354;
XX
DE Drosophila melanogaster miR-184 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-184; miR-184.
DR TARGETS:MIRTE; miR-184S; miR-184S.
DR TARGETS:PICTAR-FLY; dme-miR-184; dme-miR-184.
DR TARGETS:PICTAR-FLY; dme-miR-184*; dme-miR-184*.
XX
CC miR-184 was reported independently in references [1] and [2].
CC Computational prediction followed by northern blotting confirmed that the
CC strand containing the predicted miR is predominantly expressed [1].
CC Reference [2] confirmed the 5' end of the excised miRNA by cloning and
CC reported a length distribution of 19-23 nt with 22 nt the most commonly
CC expressed. They also reported the less predominantly expressed sequence
CC miR-184* from the opposite 5' arm.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..42
FT /accession="MIMAT0000330"
FT /product="dme-miR-184-5p"
FT /evidence=experimental
FT /experiment="cloned [2], 454 [3-4], Illumina [4]"
FT /similarity="MI0000354"
FT miRNA 61..82
FT /accession="MIMAT0000331"
FT /product="dme-miR-184-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2], 454 [3-4], Illumina
FT [4]"
FT /similarity="MI0000354"
XX
SQ Sequence 100 BP; 23 A; 28 C; 23 G; 0 T; 26 other;
gguuggccgg ugcauucgua cccuuaucau ucucucgccc cgugugcacu uaaagacaac 60
uggacggaga acugauaagg gcucguauca ccaauucauc 100
//
ID dme-mir-274 standard; RNA; DME; 100 BP.
XX
AC MI0000355;
XX
DE Drosophila melanogaster miR-274 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-274; miR-274.
XX
CC This sequence is computationally predicted based on conservation in D.
CC pseudoobscura. The precise 5' or 3' ends are unknown. Northern blotting
CC confirmed that the strand containing the predicted miR is predominantly
CC expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0000332"
FT /product="dme-miR-274-5p"
FT /evidence=experimental
FT /experiment="Northern [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000355"
FT miRNA 64..86
FT /accession="MIMAT0020800"
FT /product="dme-miR-274-3p"
FT /evidence=not_experimental
XX
SQ Sequence 100 BP; 23 A; 20 C; 23 G; 0 T; 34 other;
uccuguguug caguuucguu uugugaccga cacuaacggg uaauuguuug gccgccagga 60
uuacucguuu uugcgaucac aaauuaugaa auugcagcaa 100
//
ID dme-mir-275 standard; RNA; DME; 98 BP.
XX
AC MI0000356;
XX
DE Drosophila melanogaster miR-275 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-275; miR-275.
DR TARGETS:PICTAR-FLY; dme-miR-275; dme-miR-275.
XX
CC miR-275 was reported independently in references [1] and [2].
CC Computational prediction followed by northern blotting confirmed that the
CC strand containing the predicted miR is predominantly expressed [1].
CC Reference [2] confirmed the 5' end of the excised miRNA by cloning and
CC reported a length distribution of 19-25 nt with 22 nt the most commonly
CC expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0020801"
FT /product="dme-miR-275-5p"
FT /evidence=not_experimental
FT miRNA 59..81
FT /accession="MIMAT0000333"
FT /product="dme-miR-275-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2], 454 [3-4], Illumina
FT [4]"
FT /similarity="MI0000356"
XX
SQ Sequence 98 BP; 22 A; 21 C; 27 G; 0 T; 28 other;
uguaaagucu ccuaccuugc gcgcuaauca gugaccgggg cugguuuuuu auauacaguc 60
agguaccuga aguagcgcgc gugguggcag acauauau 98
//
ID dme-mir-92a standard; RNA; DME; 95 BP.
XX
AC MI0000357;
XX
DE Drosophila melanogaster miR-92a stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-92a; miR-92a.
DR TARGETS:PICTAR-FLY; dme-miR-92a; dme-miR-92a.
XX
CC miR-92a was reported independently in references [1] and [2].
CC Computational prediction followed by northern blotting confirmed that the
CC strand containing the predicted miR is predominantly expressed [1].
CC Reference [2] confirmed the 5' end of the excised miRNA by cloning and
CC reported a length distribution of 22-25 nt with 22 nt the most commonly
CC expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0020802"
FT /product="dme-miR-92a-5p"
FT /evidence=not_experimental
FT miRNA 55..76
FT /accession="MIMAT0000334"
FT /product="dme-miR-92a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [3], 454 [4-5], Illumina
FT [5]"
FT /similarity="MI0000357"
XX
SQ Sequence 95 BP; 26 A; 18 C; 23 G; 0 T; 28 other;
aauaugaauu ucccguagga cgggaaggug ucaacguuuu gcauuucgaa uaaacauugc 60
acuugucccg gccuaugggc gguuuguaau aaaca 95
//
ID dme-mir-219 standard; RNA; DME; 100 BP.
XX
AC MI0000358;
XX
DE Drosophila melanogaster miR-219 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-219; miR-219.
DR TARGETS:PICTAR-FLY; dme-miR-219; dme-miR-219.
XX
CC This sequence is computationally predicted based on conservation in D.
CC pseudoobscura [1]. The sequence of the excised miR is strikingly
CC conserved in human (MIR:MI0000296), but the expression of the miR has not
CC been confirmed in fly and the precise 5' or 3' ends are unknown.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0000335"
FT /product="dme-miR-219-5p"
FT /evidence=experimental
FT /experiment="454 [2-3], Illumina [3]"
FT /similarity="MI0000358"
FT /similarity="MI0001384"
FT miRNA 59..80
FT /accession="MIMAT0020803"
FT /product="dme-miR-219-3p"
FT /evidence=not_experimental
XX
SQ Sequence 100 BP; 30 A; 18 C; 20 G; 0 T; 32 other;
uaauucgauu uuuagcuaug auuguccaaa cgcaauucuu guugauauuc aauauucaag 60
gguugcgacu gggcaucgcg gcucgaaaua agaauacaac 100
//
ID dme-mir-276a standard; RNA; DME; 98 BP.
XX
AC MI0000359;
XX
DE Drosophila melanogaster miR-276a stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-276a; miR-276a.
DR TARGETS:MIRTE; miR-276aS; miR-276aS.
DR TARGETS:PICTAR-FLY; dme-miR-276a; dme-miR-276a.
XX
CC miR-276 was reported independently in references [1] and [2]. Reference
CC [2] reported a 22 nt excised sequence from the 3' arm of the precursor by
CC cloning. Computational approaches followed by Northern blotting predicted
CC an excised sequence from the 5' arm which is designated miR-276a* here
CC [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000336"
FT /product="dme-miR-276a-5p"
FT /evidence=experimental
FT /experiment="Northern [1], 454 [3-4], Illumina [4]"
FT /similarity="MI0000359"
FT miRNA 54..75
FT /accession="MIMAT0000337"
FT /product="dme-miR-276a-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2], 454 [3-4], Illumina
FT [4]"
FT /similarity="MI0000359"
XX
SQ Sequence 98 BP; 30 A; 23 C; 19 G; 0 T; 26 other;
ccugguuuuu gccaucagcg agguauagag uuccuacguu cauuauaaac ucguaggaac 60
uucauaccgu gcucuuggaa gaccaaaaaa caaccaag 98
//
ID dme-mir-277 standard; RNA; DME; 100 BP.
XX
AC MI0000360;
XX
DE Drosophila melanogaster miR-277 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 14691535.
RA Stark A, Brennecke J, Russell RB, Cohen SM;
RT "Identification of Drosophila MicroRNA targets";
RL PLoS Biol. 1:E60(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-277; miR-277.
DR TARGETS:PICTAR-FLY; dme-miR-277; dme-miR-277.
XX
CC miR-277 was reported independently in references [1] and [2].
CC Computational prediction followed by northern blotting confirmed that the
CC strand containing the predicted miR is predominantly expressed [1].
CC Reference [2] confirmed the 5' end of the excised miRNA by cloning and
CC reported a length distribution of 21-23 nt with 23 nt the most commonly
CC expressed. Stark et al. [3] have predicted that miR-277 controls the
CC pathway for valine, leucine and isoleucine degradation by downregulating
CC many of its enzymes.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..38
FT /accession="MIMAT0020804"
FT /product="dme-miR-277-5p"
FT /evidence=not_experimental
FT miRNA 59..81
FT /accession="MIMAT0000338"
FT /product="dme-miR-277-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2], 454 [4-5], Illumina
FT [5]"
FT /similarity="MI0000360"
XX
SQ Sequence 100 BP; 27 A; 19 C; 24 G; 0 T; 30 other;
uugaagguuu ugggcugcgu gucaggagug cauuugcacu gaaacuaucu gaagcaugua 60
aaugcacuau cugguacgac auuccagaac guacaaucuu 100
//
ID dme-mir-278 standard; RNA; DME; 98 BP.
XX
AC MI0000361;
XX
DE Drosophila melanogaster miR-278 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
CC miR-278 was reported independently in references [1] and [2].
CC Computational prediction followed by northern blotting confirmed that the
CC strand containing the predicted miR is predominantly expressed [1].
CC Reference [2] confirmed the 5' end of the excised miRNA by cloning and
CC reported a length distribution of 20-22 nt with 22 nt the most commonly
CC expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..40
FT /accession="MIMAT0020805"
FT /product="dme-miR-278-5p"
FT /evidence=not_experimental
FT miRNA 57..78
FT /accession="MIMAT0000339"
FT /product="dme-miR-278-3p"
FT /evidence=experimental
FT /experiment="Northern [1-2], cloned [2], 454 [3-4],
FT Illumina [4]"
FT /similarity="MI0000361"
XX
SQ Sequence 98 BP; 21 A; 21 C; 29 G; 0 T; 27 other;
guaaugguac ggugcgaccg gaugaugguu cacaacgacc gugucauuua aacgggucgg 60
ugggacuuuc guccguuugu aacgccauuu gucaacga 98
//
ID dme-mir-133 standard; RNA; DME; 98 BP.
XX
AC MI0000362;
XX
DE Drosophila melanogaster miR-133 stem-loop
XX
RN [1]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [2]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-133; miR-133.
DR TARGETS:PICTAR-FLY; dme-miR-133; dme-miR-133.
XX
CC miR-133 was reported independently by three groups using computational
CC prediction [2], Northern blot analysis [1] and cloning [3]. References
CC [1] and [2] confirmed that the strand containing the predicted miR is
CC predominantly expressed [1]. Reference [3] confirmed the ends of the
CC excised miRNA by cloning.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0020806"
FT /product="dme-miR-133-5p"
FT /evidence=not_experimental
FT miRNA 57..78
FT /accession="MIMAT0000340"
FT /product="dme-miR-133-3p"
FT /evidence=experimental
FT /experiment="Northern [1,3], 454 [4-5], Illumina [5]"
FT /similarity="MI0000362"
XX
SQ Sequence 98 BP; 21 A; 24 C; 24 G; 0 T; 29 other;
accugcaaca cuguguguag cugguugaca ucgggucaga ucuguuuuuc aagcauuugg 60
uccccuucaa ccagcuguag ccagugguug augacaac 98
//
ID dme-mir-279 standard; RNA; DME; 100 BP.
XX
AC MI0000363;
XX
DE Drosophila melanogaster miR-279 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-279; miR-279.
DR TARGETS:PICTAR-FLY; dme-miR-279; dme-miR-279.
XX
CC miR-279 was reported independently in references [1] and [2].
CC Computational prediction followed by northern blotting confirmed that the
CC strand containing the predicted miR is predominantly expressed [1].
CC Reference [2] confirmed the ends of the excised miRNA by cloning.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..47
FT /accession="MIMAT0020807"
FT /product="dme-miR-279-5p"
FT /evidence=not_experimental
FT miRNA 67..88
FT /accession="MIMAT0000341"
FT /product="dme-miR-279-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2], 454 [3-4], Illumina
FT [4]"
FT /similarity="MI0000363"
XX
SQ Sequence 100 BP; 23 A; 16 C; 22 G; 0 T; 39 other;
ggaauucaua cuacuguuuu uagugggugg ggguccagug uuucacauug auuuucuuag 60
uauuugugac uagauccaca cucauuaaua acgguaguuc 100
//
ID dme-mir-33 standard; RNA; DME; 99 BP.
XX
AC MI0000364;
XX
DE Drosophila melanogaster miR-33 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-33; miR-33.
DR TARGETS:PICTAR-FLY; dme-miR-33; dme-miR-33.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..46
FT /accession="MIMAT0000342"
FT /product="dme-miR-33-5p"
FT /evidence=experimental
FT /experiment="454 [2-3], Illumina [3]"
FT miRNA 65..86
FT /accession="MIMAT0020808"
FT /product="dme-miR-33-3p"
FT /evidence=not_experimental
XX
SQ Sequence 99 BP; 22 A; 26 C; 21 G; 0 T; 30 other;
cucuuccucu ggagaugaca cgaaggugca uuguagucgc auugucuguc ccaauugcuu 60
caggcaauac aacuucagug caagcucugu gcauuucac 99
//
ID dme-mir-280 standard; RNA; DME; 95 BP.
XX
AC MI0000365;
XX
DE Drosophila melanogaster miR-280 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
DR TARGETS:MIRTE; miR-280; miR-280.
DR TARGETS:PICTAR-FLY; dme-miR-280; dme-miR-280.
XX
CC This sequence is computationally predicted based on conservation in D.
CC pseudoobscura. The precise 5' or 3' ends are unknown. Northern blotting
CC confirmed that the strand containing the predicted miR is predominantly
CC expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..36
FT /accession="MIMAT0000343"
FT /product="dme-miR-280-5p"
FT /evidence=experimental
FT /experiment="Northern [1]"
FT /similarity="MI0000365"
XX
SQ Sequence 95 BP; 28 A; 13 C; 18 G; 0 T; 36 other;
uggcuuuuau guauuuacgu ugcauaugaa augauauuua uaguaaacag auuauuuuau 60
augcagguau augcaagucg agguccucca cacug 95
//
ID dme-mir-281-1 standard; RNA; DME; 90 BP.
XX
AC MI0000366;
XX
DE Drosophila melanogaster miR-281-1 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-281; miR-281.
DR TARGETS:MIRTE; miR-281aS; miR-281aS.
DR TARGETS:PICTAR-FLY; dme-miR-281; dme-miR-281.
DR TARGETS:PICTAR-FLY; dme-miR-281-1*; dme-miR-281-1*.
XX
CC miR-281 was reported independently in references [1] and [2]. The
CC sequence in this entry is from reference [2] which identified a 23 nt
CC excised sequence from the 3' arm of the precursor by cloning. Reference
CC [1] reported the reverse complement of this foldback precursor from
CC computational prediction and northern blotting. The predicted mature
CC sequence (5' and 3' ends unknown) from the 3' arm of the reverse
CC complement was named miR-281a in reference [1] and is designated
CC miR-281-1* here.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0000344"
FT /product="dme-miR-281-1-5p"
FT /evidence=experimental
FT /experiment="Northern [1], 454 [3-4], Illumina [4]"
FT /similarity="MI0000366"
FT miRNA 58..80
FT /accession="MIMAT0000345"
FT /product="dme-miR-281-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2], 454 [3-4], Illumina
FT [4]"
FT /similarity="MI0000366"
XX
SQ Sequence 90 BP; 29 A; 16 C; 17 G; 0 T; 28 other;
cgaauaagug aauaaagaga gcuguccguc gacaguccag aaacuauuua auaucacugu 60
cauggaauug cucucuuugu auaauauucg 90
//
ID dme-mir-282 standard; RNA; DME; 97 BP.
XX
AC MI0000367;
XX
DE Drosophila melanogaster miR-282 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-282; miR-282.
DR TARGETS:PICTAR-FLY; dme-miR-282; dme-miR-282.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..40
FT /accession="MIMAT0000346"
FT /product="dme-miR-282-5p"
FT /evidence=experimental
FT /experiment="Northern [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000367"
FT miRNA 60..81
FT /accession="MIMAT0020809"
FT /product="dme-miR-282-3p"
FT /evidence=not_experimental
XX
SQ Sequence 97 BP; 27 A; 22 C; 21 G; 0 T; 27 other;
aguuuccuuc uaaaucuagc cucuacuagg cuuugucugu gcauucgaaa gccgaucaga 60
cauagccuau aagagguuag guguaccaag gcgaaca 97
//
ID dme-mir-283 standard; RNA; DME; 100 BP.
XX
AC MI0000368;
XX
DE Drosophila melanogaster miR-283 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-283; miR-283.
DR TARGETS:PICTAR-FLY; dme-miR-283; dme-miR-283.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0000347"
FT /product="dme-miR-283-5p"
FT /evidence=experimental
FT /experiment="Northern [1-2], 454 [3-4], Illumina [4]"
FT /similarity="MI0000368"
FT miRNA 68..88
FT /accession="MIMAT0020810"
FT /product="dme-miR-283-3p"
FT /evidence=not_experimental
XX
SQ Sequence 100 BP; 31 A; 18 C; 19 G; 0 T; 32 other;
cucacacgau ucucaaaggu aaauaucagc ugguaauucu gggagcuaag ccuaaauaug 60
aaacacucgg aauuucaguu gguaucgacu uuuuugaauu 100
//
ID dme-mir-284 standard; RNA; DME; 100 BP.
XX
AC MI0000369;
XX
DE Drosophila melanogaster miR-284 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-284; miR-284.
DR TARGETS:PICTAR-FLY; dme-miR-284; dme-miR-284.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..35
FT /accession="MIMAT0020811"
FT /product="dme-miR-284-5p"
FT /evidence=not_experimental
FT miRNA 68..88
FT /accession="MIMAT0000348"
FT /product="dme-miR-284-3p"
FT /evidence=experimental
FT /experiment="Northern [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000369"
XX
SQ Sequence 100 BP; 24 A; 21 C; 28 G; 0 T; 27 other;
guugcaguuc cuggaauuaa guugacugug uagccuguga gggcaaggcu ugaauaaugc 60
uccugaaguc agcaacuuga uuccagcaau ugcggcccga 100
//
ID dme-mir-281-2 standard; RNA; DME; 92 BP.
XX
AC MI0000370;
XX
DE Drosophila melanogaster miR-281-2 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-281bS; miR-281bS.
DR TARGETS:PICTAR-FLY; dme-miR-281; dme-miR-281.
DR TARGETS:PICTAR-FLY; dme-miR-281-2*; dme-miR-281-2*.
XX
CC miR-281 was reported independently in references [1] and [2]. The
CC sequence in this entry is from reference [2] which identified a 23 nt
CC excised sequence from the 3' arm of the precursor by cloning. Reference
CC [1] reported the reverse complement of this foldback precursor from
CC computational prediction and northern blotting. The predicted mature
CC sequence (5' and 3' ends unknown) from the 3' arm of the reverse
CC complement was named miR-281b in reference [1] and is designated
CC miR-281-2* here.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000349"
FT /product="dme-miR-281-2-5p"
FT /evidence=experimental
FT /experiment="Northern [1], 454 [3-4], Illumina [4]"
FT /similarity="MI0000370"
FT miRNA 60..82
FT /accession="MIMAT0000345"
FT /product="dme-miR-281-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2], 454 [3-4], Illumina
FT [4]"
FT /similarity="MI0000370"
XX
SQ Sequence 92 BP; 28 A; 16 C; 20 G; 0 T; 28 other;
cgaauuguga aaugaagaga gcuauccguc gacagucaag uuaagaccga uuguaauacu 60
gucauggaau ugcucucuuu guauaacauu cg 92
//
ID dme-mir-34 standard; RNA; DME; 99 BP.
XX
AC MI0000371;
XX
DE Drosophila melanogaster miR-34 stem-loop
XX
RN [1]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [2]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-34; miR-34.
DR TARGETS:PICTAR-FLY; dme-miR-34; dme-miR-34.
XX
CC This sequence is computationally predicted based on conservation in D.
CC pseudoobscura and C. elegans. The precise 5' or 3' ends are unknown.
CC Expression in D. melanogaster was confirmed by Northern blot analysis [1].
CC Aravin et al. later identify the 5' and 3' ends by cloning [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..40
FT /accession="MIMAT0000350"
FT /product="dme-miR-34-5p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [3], 454 [4-5], Illumina
FT [5]"
FT /similarity="MI0000371"
FT miRNA 68..90
FT /accession="MIMAT0020812"
FT /product="dme-miR-34-3p"
FT /evidence=not_experimental
XX
SQ Sequence 99 BP; 20 A; 25 C; 25 G; 0 T; 29 other;
aauuggcuau gcgcuuuggc agugugguua gcugguugug uagccaauua uugccguuga 60
caauucacag ccacuaucuu cacugccgcc gcgacaagc 99
//
ID dme-mir-124 standard; RNA; DME; 100 BP.
XX
AC MI0000373;
XX
DE Drosophila melanogaster miR-124 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-124; miR-124.
DR TARGETS:PICTAR-FLY; dme-miR-124; dme-miR-124.
XX
CC miR-124 was reported independently in references [1] and [2].
CC Computational prediction followed by northern blotting confirmed that the
CC strand containing the predicted miR is predominantly expressed [1].
CC Reference [2] confirmed the 5' end of the excised miRNA by cloning and
CC reported a length distribution of 19-23 nt with 23 nt the most commonly
CC expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0020813"
FT /product="dme-miR-124-5p"
FT /evidence=not_experimental
FT miRNA 57..79
FT /accession="MIMAT0000351"
FT /product="dme-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2-3], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000373"
XX
SQ Sequence 100 BP; 25 A; 24 C; 21 G; 0 T; 30 other;
ucauuuggua cguuuuucuc cugguaucca cuguaggccu auauguauuu ccaccauaag 60
gcacgcggug aaugccaaga gcgaacgcag uucuacaaau 100
//
ID dme-mir-79 standard; RNA; DME; 97 BP.
XX
AC MI0000374;
XX
DE Drosophila melanogaster miR-79 stem-loop
XX
RN [1]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [2]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-79; miR-79.
DR TARGETS:PICTAR-FLY; dme-miR-79; dme-miR-79.
XX
CC miR-79 was reported independently by three groups using computational
CC prediction [2], Northern blot analysis [1] and cloning [3]. References
CC [1] and [2] confirmed that the strand containing the predicted miR is
CC predominantly expressed [1]. Reference [3] confirmed the ends of the
CC excised miRNA by cloning.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0020814"
FT /product="dme-miR-79-5p"
FT /evidence=not_experimental
FT miRNA 60..81
FT /accession="MIMAT0000352"
FT /product="dme-miR-79-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [3], 454 [4-5], Illumina
FT [5]"
FT /similarity="MI0000374"
XX
SQ Sequence 97 BP; 26 A; 19 C; 20 G; 0 T; 32 other;
ugaagcugac uugccauugc uuuggcgcuu uagcuguaug auagauuuaa acuacuucau 60
aaagcuagau uaccaaagca uuggcuucug cagguca 97
//
ID dme-mir-276b standard; RNA; DME; 99 BP.
XX
AC MI0000375;
XX
DE Drosophila melanogaster miR-276b stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-276b; miR-276b.
DR TARGETS:PICTAR-FLY; dme-miR-276b; dme-miR-276b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0020815"
FT /product="dme-miR-276b-5p"
FT /evidence=experimental
FT /experiment="Northern [1], 454 [3-4], Illumina [4]"
FT /similarity="MI0000375"
FT miRNA 62..83
FT /accession="MIMAT0000354"
FT /product="dme-miR-276b-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2], 454 [3-4], Illumina
FT [4]"
FT /similarity="MI0000375"
XX
SQ Sequence 99 BP; 26 A; 23 C; 21 G; 0 T; 29 other;
aaaaccgaag ucuuuuuacc aucagcgagg uauagaguuc cuacguuccu auauucaguc 60
guaggaacuu aauaccgugc ucuuggagga cugucgacc 99
//
ID dme-mir-210 standard; RNA; DME; 100 BP.
XX
AC MI0000376;
XX
DE Drosophila melanogaster miR-210 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-210; miR-210.
DR TARGETS:PICTAR-FLY; dme-miR-210; dme-miR-210.
XX
CC This sequence is computationally predicted based on conservation in D.
CC pseudoobscura. The precise 5' or 3' ends are unknown. Northern blotting
CC confirmed that the strand containing the predicted miR is predominantly
CC expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0020816"
FT /product="dme-miR-210-5p"
FT /evidence=not_experimental
FT miRNA 52..74
FT /accession="MIMAT0000355"
FT /product="dme-miR-210-3p"
FT /evidence=experimental
FT /experiment="cloned [2], 454 [3-4], Illumina [4]"
FT /similarity="MI0000376"
XX
SQ Sequence 100 BP; 28 A; 22 C; 27 G; 0 T; 23 other;
aaaggugcuu auugcagcug cuggccacug cacaagauua gacuuaagac ucuugugcgu 60
gugacagcgg cuauuguaag aggccauaga agcaacagcc 100
//
ID dme-mir-285 standard; RNA; DME; 99 BP.
XX
AC MI0000377;
XX
DE Drosophila melanogaster miR-285 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-285; miR-285.
DR TARGETS:PICTAR-FLY; dme-miR-285; dme-miR-285.
XX
CC miR-285 was reported independently in references [1] and [2].
CC Computational prediction followed by northern blotting confirmed that the
CC strand containing the predicted miR is predominantly expressed [1].
CC Reference [2] confirmed the ends of the excised miRNA by cloning.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0020817"
FT /product="dme-miR-285-5p"
FT /evidence=not_experimental
FT miRNA 64..85
FT /accession="MIMAT0000356"
FT /product="dme-miR-285-3p"
FT /evidence=experimental
FT /experiment="cloned [2], 454 [3], Illumina [4]"
FT /similarity="MI0000377"
XX
SQ Sequence 99 BP; 35 A; 20 C; 19 G; 0 T; 25 other;
ucgaaucgaa gaacugagau cgauuggugc auagauauca ggagaaccca cucaauuuaa 60
cucuagcacc auucgaaauc agugcuuuug auaagaaac 99
//
ID dme-mir-100 standard; RNA; DME; 100 BP.
XX
AC MI0000378;
XX
DE Drosophila melanogaster miR-100 stem-loop
XX
RN [1]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [2]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-100; miR-100.
DR TARGETS:PICTAR-FLY; dme-miR-100; dme-miR-100.
XX
CC miR-100 was reported independently by three groups using computational
CC prediction [2], Northern blot analysis [1] and cloning [3]. References
CC [1] and [2] confirmed that the strand containing the predicted miR is
CC predominantly expressed [1]. Reference [3] confirmed the ends of the
CC excised miRNA by cloning.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0000357"
FT /product="dme-miR-100-5p"
FT /evidence=experimental
FT /experiment="Northern [1,3], 454 [4-5], Illumina [5]"
FT /similarity="MI0000378"
FT miRNA 51..72
FT /accession="MIMAT0020818"
FT /product="dme-miR-100-3p"
FT /evidence=not_experimental
XX
SQ Sequence 100 BP; 29 A; 21 C; 20 G; 0 T; 30 other;
ccauuaacag aaacccguaa auccgaacuu gugcuguuuu auaucuguua caagaccggc 60
auuaugggag ucugucaaug caaacaacug guuuuuggca 100
//
ID dme-mir-92b standard; RNA; DME; 100 BP.
XX
AC MI0000379;
XX
DE Drosophila melanogaster miR-92b stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-92b; miR-92b.
DR TARGETS:PICTAR-FLY; dme-miR-92b; dme-miR-92b.
XX
CC miR-92b was reported independently in references [1] and [2].
CC Computational prediction followed by northern blotting confirmed that the
CC strand containing the predicted miR is predominantly expressed [1].
CC Reference [2] confirmed the ends of the excised miRNA by cloning.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0020819"
FT /product="dme-miR-92b-5p"
FT /evidence=not_experimental
FT miRNA 60..81
FT /accession="MIMAT0000358"
FT /product="dme-miR-92b-3p"
FT /evidence=experimental
FT /experiment="Northern [1,3], cloned [2], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000379"
XX
SQ Sequence 100 BP; 24 A; 25 C; 23 G; 0 T; 28 other;
uaaaacguca ccugauguag gccgugccca gugcuuauuu guugcauuuu cgaaauacaa 60
auugcacuag ucccggccug caaugagugu cgcagucgac 100
//
ID dme-mir-286 standard; RNA; DME; 100 BP.
XX
AC MI0000380;
XX
DE Drosophila melanogaster miR-286 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-286; miR-286.
DR TARGETS:PICTAR-FLY; dme-miR-286; dme-miR-286.
XX
CC miR-286 was reported independently in references [1] and [2].
CC Computational prediction followed by northern blotting confirmed that the
CC strand containing the predicted miR is predominantly expressed [1].
CC Reference [2] confirmed the 5' end of the excised miRNA by cloning and
CC reported a length distribution of 22-24 nt with 23 nt the most commonly
CC expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0020820"
FT /product="dme-miR-286-5p"
FT /evidence=not_experimental
FT miRNA 65..87
FT /accession="MIMAT0000359"
FT /product="dme-miR-286-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2], 454 [3-4], Illumina
FT [4]"
FT /similarity="MI0000380"
XX
SQ Sequence 100 BP; 33 A; 14 C; 21 G; 0 T; 32 other;
uuaaaauuga auggcgaaug ucgguauggu cucuuuuuca aagaaagguu ucgauuaagc 60
gaagugacua gaccgaacac ucgugcuaua auuuuaaaau 100
//
ID dme-mir-287 standard; RNA; DME; 93 BP.
XX
AC MI0000381;
XX
DE Drosophila melanogaster miR-287 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
DR TARGETS:MIRTE; miR-287; miR-287.
DR TARGETS:PICTAR-FLY; dme-miR-287; dme-miR-287.
XX
CC This sequence is computationally predicted based on conservation in D.
CC pseudoobscura. The precise 5' or 3' ends are unknown. Northern blotting
CC confirmed that the strand containing the predicted miR is predominantly
CC expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 65..85
FT /accession="MIMAT0000360"
FT /product="dme-miR-287-3p"
FT /evidence=experimental
FT /experiment="Northern [1]"
FT /similarity="MI0000381"
XX
SQ Sequence 93 BP; 25 A; 12 C; 27 G; 0 T; 29 other;
ggacgccggg gauguauggg uguguagggu cugaaauuuu gcacacauuu acaauaauug 60
uaaauguguu gaaaaucguu ugcacgacug uga 93
//
ID dme-mir-87 standard; RNA; DME; 99 BP.
XX
AC MI0000382;
XX
DE Drosophila melanogaster miR-87 stem-loop
XX
RN [1]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-87; miR-87.
DR TARGETS:PICTAR-FLY; dme-miR-87; dme-miR-87.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0020821"
FT /product="dme-miR-87-5p"
FT /evidence=not_experimental
FT miRNA 61..84
FT /accession="MIMAT0000361"
FT /product="dme-miR-87-3p"
FT /evidence=experimental
FT /experiment="Northern [1-2], 454 [4-5], Illumina [5]"
FT /similarity="MI0000382"
XX
SQ Sequence 99 BP; 25 A; 22 C; 23 G; 0 T; 29 other;
aacacauuuc auucgcgccu guaucuugcu gaaccgcugc cauuauggcc aacgauccgg 60
uugagcaaaa uuucaggugu gugagaaaug uguuuagca 99
//
ID dme-mir-263b standard; RNA; DME; 90 BP.
XX
AC MI0000383;
XX
DE Drosophila melanogaster miR-263b stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-263b; miR-263b.
DR TARGETS:PICTAR-FLY; dme-miR-263b; dme-miR-263b.
XX
CC miR-263b was reported independently in references [1] and [2].
CC Computational prediction followed by northern blotting confirmed that the
CC strand containing the predicted miR is predominantly expressed [1].
CC Reference [2] confirmed the ends of the excised miRNA by cloning.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0000362"
FT /product="dme-miR-263b-5p"
FT /evidence=experimental
FT /experiment="cloned [2], 454 [3-4], Illumina [4]"
FT /similarity="MI0000383"
FT miRNA 55..76
FT /accession="MIMAT0020822"
FT /product="dme-miR-263b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 90 BP; 20 A; 17 C; 22 G; 0 T; 31 other;
uugcugacuu ugagucuugg cacugggaga auucacaguu gacuuuauua uucugugguu 60
cugcgggugc caaaacuuaa aaaccggcuu 90
//
ID dme-mir-288 standard; RNA; DME; 97 BP.
XX
AC MI0000384;
XX
DE Drosophila melanogaster miR-288 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
DR TARGETS:MIRTE; miR-288; miR-288.
DR TARGETS:PICTAR-FLY; dme-miR-288; dme-miR-288.
XX
CC This sequence is computationally predicted based on conservation in D.
CC pseudoobscura. The precise 5' or 3' ends are unknown. Northern blotting
CC confirmed that the strand containing the predicted miR is predominantly
CC expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 66..88
FT /accession="MIMAT0000363"
FT /product="dme-miR-288-3p"
FT /evidence=experimental
FT /experiment="Northern [1]"
FT /similarity="MI0000384"
XX
SQ Sequence 97 BP; 20 A; 23 C; 28 G; 0 T; 26 other;
cggccauguc guaauuagcg gagcacggca ucgccggcga uaauuaauga cgguggucac 60
guugguuuca ugucgauuuc auuucaugac acggccg 97
//
ID dme-mir-289 standard; RNA; DME; 99 BP.
XX
AC MI0000385;
XX
DE Drosophila melanogaster miR-289 stem-loop
XX
RN [1]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
DR TARGETS:MIRTE; miR-289; miR-289.
DR TARGETS:PICTAR-FLY; dme-miR-289; dme-miR-289.
XX
CC This sequence is computationally predicted based on conservation in D.
CC pseudoobscura. The precise 5' or 3' ends are unknown. Northern blotting
CC confirmed that the strand containing the predicted miR is predominantly
CC expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..41
FT /accession="MIMAT0000364"
FT /product="dme-miR-289-5p"
FT /evidence=experimental
FT /experiment="Northern [1]"
FT /similarity="MI0000385"
XX
SQ Sequence 99 BP; 28 A; 18 C; 25 G; 0 T; 28 other;
gaguuuacag uaaaauaaau auuuaagugg agccugcgac uucagucccu cugacugacu 60
gggguaaguc acuugagcgu uuguuggcac guaaaagac 99
//
ID dme-bantam standard; RNA; DME; 81 BP.
XX
AC MI0000387;
XX
DE Drosophila melanogaster bantam stem-loop
XX
RN [1]
RX PUBMED; 12679032.
RA Brennecke J, Hipfner DR, Stark A, Russell RB, Cohen SM;
RT "bantam encodes a developmentally regulated microRNA that controls cell
RT proliferation and regulates the proapoptotic gene hid in Drosophila";
RL Cell. 113:25-36(2003).
XX
RN [2]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [3]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [4]
RX PUBMED; 12946623.
RA Moberg KH, Hariharan IK;
RT "Big things from a little RNA";
RL Trends Cell Biol. 13:455-457(2003).
XX
RN [5]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [6]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
CC bantam microRNA was predicted independently by two groups using
CC computational approaches [1,2]. Northern blotting confirmed that the
CC strand containing the predicted miR is predominantly expressed. Subsequent
CC cloning studies have independently identified the same miRNA and confirmed
CC the 5' end [3]. A length distribution of 20-23 nt was reported with a 23
CC nt sequence the most commonly expressed. bantam is reported to promote
CC tissue growth [1]. bantam expression is temporally and spatially
CC regulated in response to patterning cues. bantam microRNA simultaneously
CC stimulates cell proliferation and prevents apoptosis and is predicted to
CC target the pro-apoptotic gene hid [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0020823"
FT /product="dme-bantam-5p"
FT /evidence=not_experimental
FT miRNA 52..74
FT /accession="MIMAT0000365"
FT /product="dme-bantam-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [3], 454 [5-6], Illumina
FT [6]"
FT /similarity="MI0000387"
XX
SQ Sequence 81 BP; 21 A; 11 C; 16 G; 0 T; 33 other;
auuugacuac gaaaccgguu uucgauuugg uuugacuguu uuucauacaa gugagaucau 60
uuugaaagcu gauuuuguca a 81
//
ID mmu-mir-290a standard; RNA; MMU; 83 BP.
XX
AC MI0000388;
XX
DE Mus musculus miR-290a stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3711323; Mir290.
DR ENTREZGENE; 100049710; Mir290.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000366"
FT /product="mmu-miR-290a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3-4]"
FT miRNA 49..72
FT /accession="MIMAT0004572"
FT /product="mmu-miR-290a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 83 BP; 16 A; 20 C; 18 G; 0 T; 29 other;
cucaucuugc gguacucaaa cuaugggggc acuuuuuuuu uucuuuaaaa agugccgccu 60
aguuuuaagc cccgccgguu gag 83
//
ID mmu-mir-291a standard; RNA; MMU; 82 BP.
XX
AC MI0000389;
XX
DE Mus musculus miR-291a stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3711324; Mir291a.
DR ENTREZGENE; 100049715; Mir291a.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000367"
FT /product="mmu-miR-291a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 50..71
FT /accession="MIMAT0000368"
FT /product="mmu-miR-291a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3-4]"
XX
SQ Sequence 82 BP; 17 A; 21 C; 23 G; 0 T; 21 other;
ccuauguagc ggccaucaaa guggaggccc ucucuugagc cugaaugaga aagugcuucc 60
acuuugugug ccacugcaug gg 82
//
ID mmu-mir-292a standard; RNA; MMU; 82 BP.
XX
AC MI0000390;
XX
DE Mus musculus miR-292 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3711325; Mir292.
DR ENTREZGENE; 100049711; Mir292.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0000369"
FT /product="mmu-miR-292a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3-4]"
FT miRNA 50..73
FT /accession="MIMAT0000370"
FT /product="mmu-miR-292a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3-4]"
XX
SQ Sequence 82 BP; 17 A; 17 C; 24 G; 0 T; 24 other;
cagccuguga uacucaaacu gggggcucuu uuggauuuuc aucggaagaa aagugccgcc 60
agguuuugag ugucaccggu ug 82
//
ID mmu-mir-293 standard; RNA; MMU; 80 BP.
XX
AC MI0000391;
XX
DE Mus musculus miR-293 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3711326; Mir293.
DR ENTREZGENE; 100049714; Mir293.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0004573"
FT /product="mmu-miR-293-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 48..69
FT /accession="MIMAT0000371"
FT /product="mmu-miR-293-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3-4]"
XX
SQ Sequence 80 BP; 17 A; 12 C; 21 G; 0 T; 30 other;
uucaaucugu gguacucaaa cugugugaca uuuuguucuu uguaagaagu gccgcagagu 60
uuguaguguu gccgauugag 80
//
ID mmu-mir-294 standard; RNA; MMU; 84 BP.
XX
AC MI0000392;
XX
DE Mus musculus miR-294 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3711327; Mir294.
DR ENTREZGENE; 100049712; Mir294.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0004574"
FT /product="mmu-miR-294-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 51..72
FT /accession="MIMAT0000372"
FT /product="mmu-miR-294-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3-4]"
XX
SQ Sequence 84 BP; 20 A; 17 C; 19 G; 0 T; 28 other;
uuccauauag ccauacucaa aauggaggcc cuaucuaagc uuuuaagugg aaagugcuuc 60
ccuuuugugu guugccaugu ggag 84
//
ID mmu-mir-295 standard; RNA; MMU; 69 BP.
XX
AC MI0000393;
XX
DE Mus musculus miR-295 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3711328; Mir295.
DR ENTREZGENE; 100049713; Mir295.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0004575"
FT /product="mmu-miR-295-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 43..65
FT /accession="MIMAT0000373"
FT /product="mmu-miR-295-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3-4]"
XX
SQ Sequence 69 BP; 17 A; 15 C; 17 G; 0 T; 20 other;
ggugagacuc aaaugugggg cacacuucug gacuguacau agaaagugcu acuacuuuug 60
agucucucc 69
//
ID mmu-mir-296 standard; RNA; MMU; 79 BP.
XX
AC MI0000394;
XX
DE Mus musculus miR-296 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619269; Mir296.
DR ENTREZGENE; 723906; Mir296.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0000374"
FT /product="mmu-miR-296-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3-4]"
FT miRNA 47..68
FT /accession="MIMAT0004576"
FT /product="mmu-miR-296-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 79 BP; 8 A; 23 C; 27 G; 0 T; 21 other;
gggccuuucu ggagggcccc cccucaaucc uguugugcuc gcuucagagg guugggugga 60
ggcucuccug aaggugucc 79
//
ID mmu-mir-297a-1 standard; RNA; MMU; 76 BP.
XX
AC MI0000395;
XX
DE Mus musculus miR-297a-1 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR MGI; 3619319; Mirn297-1.
DR ENTREZGENE; 723831; Mir297-1.
XX
CC Houbaviy et al. report that the cloned sequence of miR-297 is found over
CC 20 times in the mouse genomic sequence [1]. This sequence appears to
CC match several low complexity repetitive regions. Confidence in which loci
CC actually express miR-297 is low because of the low complexity nature of
CC the sequence. The mature sequence shown here represents the most commonly
CC cloned form from large-scale cloning studies [2]. The ends of the miRNA
CC may be offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000375"
FT /product="mmu-miR-297a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
XX
SQ Sequence 76 BP; 20 A; 7 C; 17 G; 0 T; 32 other;
auauguaugu auguauguau gugugcaugu gcaugugcau guaugcauau ugcauguaua 60
uauuaugcau acaugu 76
//
ID mmu-mir-297a-2 standard; RNA; MMU; 90 BP.
XX
AC MI0000397;
XX
DE Mus musculus miR-297a-2 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
DR MGI; 3619320; Mirn297-2.
DR ENTREZGENE; 723945; Mir297-2.
XX
CC Houbaviy et al. report that the cloned sequence of miR-297 is found over
CC 20 times in the mouse genomic sequence [1]. This sequence appears to
CC match several low complexity repetitive regions. Confidence in which loci
CC actually express miR-297 is low because of the low complexity nature of
CC the sequence.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0000375"
FT /product="mmu-miR-297a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1]"
XX
SQ Sequence 90 BP; 28 A; 19 C; 17 G; 0 T; 26 other;
cuguguguau auguaugugu gcaugugcau guguguauau gaguauacau auacauacgc 60
acauacccau acaagcaugc acacaaaccc 90
//
ID mmu-mir-298 standard; RNA; MMU; 82 BP.
XX
AC MI0000398;
XX
DE Mus musculus miR-298 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619321; Mir298.
DR ENTREZGENE; 723832; Mir298.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0000376"
FT /product="mmu-miR-298-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 51..74
FT /accession="MIMAT0017007"
FT /product="mmu-miR-298-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 82 BP; 14 A; 18 C; 26 G; 0 T; 24 other;
ccaggccuuu ggcagaggag ggcuguucuu cccuugaguu uuaugacugg gaggaacuag 60
ccuucucuca gcuuaggagu gg 82
//
ID mmu-mir-299a standard; RNA; MMU; 63 BP.
XX
AC MI0000399;
XX
DE Mus musculus miR-299 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619322; Mir299.
DR ENTREZGENE; 723927; Mir299.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000377"
FT /product="mmu-miR-299a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 39..60
FT /accession="MIMAT0004577"
FT /product="mmu-miR-299a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 63 BP; 17 A; 12 C; 14 G; 0 T; 20 other;
aagaaauggu uuaccguccc acauacauuu ugaguaugua ugugggacgg uaaaccgcuu 60
cuu 63
//
ID mmu-mir-300 standard; RNA; MMU; 79 BP.
XX
AC MI0000400;
XX
DE Mus musculus miR-300 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619323; Mir300.
DR ENTREZGENE; 723833; Mir300.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0004578"
FT /product="mmu-miR-300-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 51..72
FT /accession="MIMAT0000378"
FT /product="mmu-miR-300-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 79 BP; 19 A; 14 C; 22 G; 0 T; 24 other;
gcuacuugaa gagagguuau ccuuugugug uuugcuuuac gcgaaaugaa uaugcaaggg 60
caagcucucu ucgaggagc 79
//
ID mmu-mir-301a standard; RNA; MMU; 86 BP.
XX
AC MI0000401;
XX
DE Mus musculus miR-301a stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619324; Mirn301.
DR ENTREZGENE; 723834; Mir301.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0017008"
FT /product="mmu-miR-301a-5p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
FT miRNA 51..73
FT /accession="MIMAT0000379"
FT /product="mmu-miR-301a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], Illumina [4,6]"
XX
SQ Sequence 86 BP; 21 A; 22 C; 20 G; 0 T; 23 other;
ccugcuaacg gcugcucuga cuuuauugca cuacuguacu uuacagcgag cagugcaaua 60
guauugucaa agcauccgcg agcagg 86
//
ID mmu-mir-302a standard; RNA; MMU; 69 BP.
XX
AC MI0000402;
XX
DE Mus musculus miR-302a stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619325; Mir302a.
DR ENTREZGENE; 723920; Mir302a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0004579"
FT /product="mmu-miR-302a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 44..66
FT /accession="MIMAT0000380"
FT /product="mmu-miR-302a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3-4]"
XX
SQ Sequence 69 BP; 17 A; 13 C; 16 G; 0 T; 23 other;
ccaccacuua aacgugguug uacuugcuuu agaccuaaga aaguaagugc uuccauguuu 60
uggugaugg 69
//
ID mmu-mir-34c standard; RNA; MMU; 77 BP.
XX
AC MI0000403;
XX
DE Mus musculus miR-34c stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619365; Mir34c.
DR ENTREZGENE; 723932; Mir34c.
XX
CC Houbaviy et al. cloned 3 closely related sequences from mouse embryonic
CC stem cells [1], and named them miR-34a, miR-34b and miR-172. These names
CC have been remapped to miR-34c (MIR:MI0000403), miR-34b (MIR:MI0000404) and
CC miR-34a (MIR:MI0000584) to clarify homology with human sequences.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0000381"
FT /product="mmu-miR-34c-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 46..67
FT /accession="MIMAT0004580"
FT /product="mmu-miR-34c-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 77 BP; 27 A; 16 C; 15 G; 0 T; 19 other;
agucuaguua cuaggcagug uaguuagcug auugcuaaua guaccaauca cuaaccacac 60
agccagguaa aaagacu 77
//
ID mmu-mir-34b standard; RNA; MMU; 84 BP.
XX
AC MI0000404;
XX
DE Mus musculus miR-34b stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619364; Mir34b.
DR ENTREZGENE; 723849; Mir34b.
XX
CC Houbaviy et al. cloned 3 closely related sequences from mouse embryonic
CC stem cells [1], and named them miR-34a, miR-34b and miR-172. These names
CC have been remapped to miR-34c (MIR:MI0000403), miR-34b (MIR:MI0000404) and
CC miR-34a (MIR:MI0000584) to clarify homology with human sequences. The
CC mature sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [2]. The 5' end of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0000382"
FT /product="mmu-miR-34b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 51..72
FT /accession="MIMAT0004581"
FT /product="mmu-miR-34b-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 84 BP; 22 A; 19 C; 21 G; 0 T; 22 other;
gugcucgguu uguaggcagu guaauuagcu gauuguagug cggugcugac aaucacuaac 60
uccacugcca ucaaaacaag gcac 84
//
ID mmu-let-7d standard; RNA; MMU; 103 BP.
XX
AC MI0000405;
XX
DE Mus musculus let-7d stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676796; Mirlet7d.
DR ENTREZGENE; 387247; Mirlet7d.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000383"
FT /product="mmu-let-7d-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Illumina [6-7]"
FT miRNA 70..91
FT /accession="MIMAT0000384"
FT /product="mmu-let-7d-3p"
FT /evidence=experimental
FT /experiment="cloned [2,5], Illumina [6-7]"
XX
SQ Sequence 103 BP; 25 A; 18 C; 28 G; 0 T; 32 other;
aauggguucc uaggaagagg uaguagguug cauaguuuua gggcagagau uuugcccaca 60
aggaguuaac uauacgaccu gcugccuuuc uuagggccuu auu 103
//
ID mmu-mir-106a standard; RNA; MMU; 65 BP.
XX
AC MI0000406;
XX
DE Mus musculus miR-106a stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619120; Mir106a.
DR ENTREZGENE; 723829; Mir106a.
XX
CC Mouse and human miR-106a (MIR:MI0000406 and MIR:MI0000113) differ at two
CC positions but the precursor sequences are clearly closely related. The
CC sequences are also related to mir-17 (MIR:MI0000071 and MIR:MI0000687).
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..27
FT /accession="MIMAT0000385"
FT /product="mmu-miR-106a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 41..63
FT /accession="MIMAT0017009"
FT /product="mmu-miR-106a-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 65 BP; 16 A; 14 C; 14 G; 0 T; 21 other;
augucaaagu gcuaacagug cagguagcuu uuugaguucu acugcagugc cagcacuucu 60
uacau 65
//
ID mmu-mir-106b standard; RNA; MMU; 82 BP.
XX
AC MI0000407;
XX
DE Mus musculus miR-106b stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619060; Mir106b.
DR ENTREZGENE; 723925; Mir106b.
XX
CC Reference [1] reported the same miRNA sequence with two different
CC identifiers - miR-106b and miR-94.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0000386"
FT /product="mmu-miR-106b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 52..73
FT /accession="MIMAT0004582"
FT /product="mmu-miR-106b-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 82 BP; 14 A; 22 C; 25 G; 0 T; 21 other;
ccugcuggga cuaaagugcu gacagugcag auaguggucc ucucugugcu accgcacugu 60
ggguacuugc ugcuccagca gg 82
//
ID mmu-mir-130b standard; RNA; MMU; 82 BP.
XX
AC MI0000408;
XX
DE Mus musculus miR-130b stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618716; Mir130b.
DR ENTREZGENE; 723816; Mir130b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0004583"
FT /product="mmu-miR-130b-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT miRNA 51..72
FT /accession="MIMAT0000387"
FT /product="mmu-miR-130b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], Illumina [4-5]"
XX
SQ Sequence 82 BP; 14 A; 20 C; 26 G; 0 T; 22 other;
ggcuuguugg acacucuuuc ccuguugcac uacugugggc cucugggaag cagugcaaug 60
augaaagggc aucugucggg cc 82
//
ID dme-mir-303 standard; RNA; DME; 70 BP.
XX
AC MI0000409;
XX
DE Drosophila melanogaster miR-303 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-303; miR-303.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0000388"
FT /product="dme-miR-303-5p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000409"
FT miRNA 43..64
FT /accession="MIMAT0020824"
FT /product="dme-miR-303-3p"
FT /evidence=not_experimental
XX
SQ Sequence 70 BP; 24 A; 12 C; 11 G; 0 T; 23 other;
ucuugguuua gguuucacag gaaacugguu uaauaacgaa aacuaguuuc cucuaaaauc 60
cuaaucaaga 70
//
ID dme-mir-31b standard; RNA; DME; 127 BP.
XX
AC MI0000410;
XX
DE Drosophila melanogaster miR-31b stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-31b; miR-31b.
DR TARGETS:PICTAR-FLY; dme-miR-31b; dme-miR-31b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000389"
FT /product="dme-miR-31b-5p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000410"
FT miRNA 94..115
FT /accession="MIMAT0020825"
FT /product="dme-miR-31b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 127 BP; 41 A; 21 C; 27 G; 0 T; 38 other;
caaauaauga auuuggcaag augucggaau agcugagagc acagcggauc gaacauuuua 60
ucguccgaaa aaaugugauu auuuuugaaa agcggcuaug ccucaucuag ucaauugcau 120
uacuuug 127
//
ID dme-mir-304 standard; RNA; DME; 88 BP.
XX
AC MI0000411;
XX
DE Drosophila melanogaster miR-304 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-304; miR-304.
DR TARGETS:PICTAR-FLY; dme-miR-304; dme-miR-304.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..34
FT /accession="MIMAT0000390"
FT /product="dme-miR-304-5p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000411"
FT miRNA 58..79
FT /accession="MIMAT0020826"
FT /product="dme-miR-304-3p"
FT /evidence=not_experimental
XX
SQ Sequence 88 BP; 24 A; 17 C; 20 G; 0 T; 27 other;
gcagcauuga auaaucucaa uuuguaaaug ugagcgguuu aagccauuug acgcacucac 60
uuugcaauug gagauugcuc gagacugc 88
//
ID dme-mir-305 standard; RNA; DME; 73 BP.
XX
AC MI0000412;
XX
DE Drosophila melanogaster miR-305 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-305; miR-305.
DR TARGETS:PICTAR-FLY; dme-miR-305; dme-miR-305.
XX
CC Lai et al. predicted this sequence based on conservation in D.
CC pseudoobscura, but did not verify expression [2]. Aravin et al. describe
CC identification and mapping of the 5' end of the excised sequence by
CC cloning [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0000391"
FT /product="dme-miR-305-5p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [3-4], Illumina [4]"
FT /similarity="MI0000412"
FT miRNA 46..68
FT /accession="MIMAT0020827"
FT /product="dme-miR-305-3p"
FT /evidence=not_experimental
XX
SQ Sequence 73 BP; 16 A; 17 C; 16 G; 0 T; 24 other;
caugucuauu guacuucauc aggugcucug gugugucucg uaacccggca cauguugaag 60
uacacucaau aug 73
//
ID dme-mir-9c standard; RNA; DME; 92 BP.
XX
AC MI0000413;
XX
DE Drosophila melanogaster miR-9c stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-9c; miR-9c.
DR TARGETS:PICTAR-FLY; dme-miR-9c; dme-miR-9c.
XX
CC Lai et al. predicted this sequence based on conservation in D.
CC pseudoobscura, but did not verify expression [2]. Aravin et al. describe
CC identification and mapping of the ends of the excised sequence by cloning
CC [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0000392"
FT /product="dme-miR-9c-5p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [3-4], Illumina [4]"
FT /similarity="MI0000413"
FT miRNA 61..82
FT /accession="MIMAT0020828"
FT /product="dme-miR-9c-3p"
FT /evidence=not_experimental
XX
SQ Sequence 92 BP; 23 A; 17 C; 13 G; 0 T; 39 other;
auuuuugcug uuucuuuggu auucuagcug uagauuguuu cacgcacauu guauaucauc 60
uaaagcuuuu auaccaaagc uccagcuuaa au 92
//
ID dme-mir-306 standard; RNA; DME; 85 BP.
XX
AC MI0000414;
XX
DE Drosophila melanogaster miR-306 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-306; miR-306.
DR TARGETS:MIRTE; miR-306S; miR-306S.
DR TARGETS:PICTAR-FLY; dme-miR-306; dme-miR-306.
XX
CC miR-306 was identified and ends mapped by cloning. Reference [1] also
CC identified a less predominantly expressed miR from the opposite arm of the
CC precursor, designated miR-306* here
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000393"
FT /product="dme-miR-306-5p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000414"
FT miRNA 52..73
FT /accession="MIMAT0000394"
FT /product="dme-miR-306-3p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000414"
XX
SQ Sequence 85 BP; 13 A; 21 C; 24 G; 0 T; 27 other;
guccacucga uggcucaggu acuuagugac ucucaaugcu uuugacauuu ugggggucac 60
ucugugccug ugcugccagu gggac 85
//
ID dme-mir-9b standard; RNA; DME; 91 BP.
XX
AC MI0000415;
XX
DE Drosophila melanogaster miR-9b stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-9b; miR-9b.
DR TARGETS:PICTAR-FLY; dme-miR-9b; dme-miR-9b.
XX
CC Lai et al. predicted this sequence based on conservation in D.
CC pseudoobscura, but did not verify expression [2]. Aravin et al. describe
CC identification and mapping of the 5' end of the excised sequence by
CC cloning [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0000395"
FT /product="dme-miR-9b-5p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [3-4], Illumina [4]"
FT /similarity="MI0000415"
FT miRNA 56..77
FT /accession="MIMAT0020829"
FT /product="dme-miR-9b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 91 BP; 23 A; 13 C; 16 G; 0 T; 39 other;
ugcauauuau uugcucuuug gugauuuuag cuguauggug uuuauguaua uuccauagag 60
cuuuauuacc aaaaaccaaa ugguuucugc a 91
//
ID dme-let-7 standard; RNA; DME; 78 BP.
XX
AC MI0000416;
XX
DE Drosophila melanogaster let-7 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [3]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; let-7; let-7.
DR TARGETS:PICTAR-FLY; dme-let-7; dme-let-7.
DR ENTREZGENE; 3772493; let-7.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0000396"
FT /product="dme-let-7-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1-3], 454 [4-5],
FT Illumina [5]"
FT /similarity="MI0000416"
FT miRNA 49..70
FT /accession="MIMAT0020830"
FT /product="dme-let-7-3p"
FT /evidence=not_experimental
XX
SQ Sequence 78 BP; 22 A; 11 C; 16 G; 0 T; 29 other;
ucuggcaaau ugagguagua gguuguauag uaguaauuac acaucauacu auacaaugug 60
cuagcuuucu uugcuuga 78
//
ID dme-mir-125 standard; RNA; DME; 110 BP.
XX
AC MI0000417;
XX
DE Drosophila melanogaster miR-125 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-125; miR-125.
DR TARGETS:PICTAR-FLY; dme-miR-125; dme-miR-125.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..50
FT /accession="MIMAT0000397"
FT /product="dme-miR-125-5p"
FT /evidence=experimental
FT /experiment="Northern [1-2], 454 [3-4], Illumina [4]"
FT /similarity="MI0000417"
FT miRNA 68..88
FT /accession="MIMAT0020831"
FT /product="dme-miR-125-3p"
FT /evidence=not_experimental
XX
SQ Sequence 110 BP; 26 A; 22 C; 23 G; 0 T; 39 other;
gacaugugca aauguuugua uggcugauuc ccugagaccc uaacuuguga cuuuuaauac 60
caguuucaca aguuuugauc uccgguauug gacgcaaacu ugcugauguu 110
//
ID dme-mir-307a standard; RNA; DME; 88 BP.
XX
AC MI0000418;
XX
DE Drosophila melanogaster miR-307a stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-307; miR-307.
DR TARGETS:PICTAR-FLY; dme-miR-307; dme-miR-307.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0020832"
FT /product="dme-miR-307a-5p"
FT /evidence=not_experimental
FT miRNA 56..78
FT /accession="MIMAT0000398"
FT /product="dme-miR-307a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000418"
XX
SQ Sequence 88 BP; 20 A; 20 C; 20 G; 0 T; 28 other;
ugucuugcuu ugacucacuc aaccugggug ugauguuauu ucgauauggu auccaucaca 60
accuccuuga gugagcgaua gcaggaca 88
//
ID dme-mir-308 standard; RNA; DME; 63 BP.
XX
AC MI0000419;
XX
DE Drosophila melanogaster miR-308 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-308; miR-308.
DR TARGETS:PICTAR-FLY; dme-miR-308; dme-miR-308.
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..24
FT /accession="MIMAT0020833"
FT /product="dme-miR-308-5p"
FT /evidence=not_experimental
FT miRNA 42..63
FT /accession="MIMAT0000399"
FT /product="dme-miR-308-3p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000419"
XX
SQ Sequence 63 BP; 14 A; 10 C; 12 G; 0 T; 27 other;
cucgcaguau auuuuugugu uuuguuucgu uuugcaaucc aaaucacagg auuauacugu 60
gag 63
//
ID dme-mir-31a standard; RNA; DME; 92 BP.
XX
AC MI0000420;
XX
DE Drosophila melanogaster miR-31a stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-31a; miR-31a.
DR TARGETS:PICTAR-FLY; dme-miR-31a; dme-miR-31a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0000400"
FT /product="dme-miR-31a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000420"
FT miRNA 60..81
FT /accession="MIMAT0020834"
FT /product="dme-miR-31a-3p"
FT /evidence=not_experimental
XX
SQ Sequence 92 BP; 24 A; 15 C; 26 G; 0 T; 27 other;
uccguuggua aauuggcaag augucggcau agcugacguu gaaaagcgau uuugaagagc 60
gcuaugcugc aucuagucag uuguucaaug ga 92
//
ID dme-mir-309 standard; RNA; DME; 69 BP.
XX
AC MI0000421;
XX
DE Drosophila melanogaster miR-309 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-309; miR-309.
DR TARGETS:PICTAR-FLY; dme-miR-309; dme-miR-309.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0020835"
FT /product="dme-miR-309-5p"
FT /evidence=not_experimental
FT miRNA 44..65
FT /accession="MIMAT0000401"
FT /product="dme-miR-309-3p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000421"
XX
SQ Sequence 69 BP; 19 A; 15 C; 12 G; 0 T; 23 other;
auuauacgac aaaccuuguu cgguuuugcc aauuuccaag ccagcacugg guaaaguuug 60
uccuauaau 69
//
ID dme-mir-310 standard; RNA; DME; 89 BP.
XX
AC MI0000422;
XX
DE Drosophila melanogaster miR-310 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-310; miR-310.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0020836"
FT /product="dme-miR-310-5p"
FT /evidence=not_experimental
FT miRNA 54..75
FT /accession="MIMAT0000402"
FT /product="dme-miR-310-3p"
FT /evidence=experimental
FT /experiment="Northern [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000422"
XX
SQ Sequence 89 BP; 22 A; 18 C; 18 G; 0 T; 31 other;
aacauaaaca uuugcagggc gggucgugug ucaguguauu uauaucuuag cuauauugca 60
cacuucccgg ccuuuaaaug uccaauguu 89
//
ID dme-mir-311 standard; RNA; DME; 84 BP.
XX
AC MI0000423;
XX
DE Drosophila melanogaster miR-311 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-311; miR-311.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0020837"
FT /product="dme-miR-311-5p"
FT /evidence=not_experimental
FT miRNA 52..73
FT /accession="MIMAT0000403"
FT /product="dme-miR-311-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], 454 [2-3], Illumina
FT [3]"
FT /similarity="MI0000423"
XX
SQ Sequence 84 BP; 25 A; 14 C; 15 G; 0 T; 30 other;
ucuagaucau uuuucggacg guauaugggu uaauauuuca uuugucgaau auauugcaca 60
uucaccggcc ugaaaauauc aaga 84
//
ID dme-mir-312 standard; RNA; DME; 66 BP.
XX
AC MI0000424;
XX
DE Drosophila melanogaster miR-312 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-312; miR-312.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..27
FT /accession="MIMAT0020838"
FT /product="dme-miR-312-5p"
FT /evidence=not_experimental
FT miRNA 43..64
FT /accession="MIMAT0000404"
FT /product="dme-miR-312-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], 454 [2-3], Illumina
FT [3]"
FT /similarity="MI0000424"
XX
SQ Sequence 66 BP; 15 A; 12 C; 15 G; 0 T; 24 other;
gauuugguuc gucacaaggg caauucugca uuuuuuaacu aguauugcac uugagacggc 60
cugauu 66
//
ID dme-mir-313 standard; RNA; DME; 71 BP.
XX
AC MI0000425;
XX
DE Drosophila melanogaster miR-313 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-313; miR-313.
XX
CC miR-313 was predicted based on conservation of clustering with miR-310
CC (MIR:MI0000422), miR-311 (MIR:MI0000423) and miR-312 (MIR:MI0000424). Its
CC expression has not been verified.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0020839"
FT /product="dme-miR-313-5p"
FT /evidence=not_experimental
FT miRNA 46..67
FT /accession="MIMAT0000405"
FT /product="dme-miR-313-3p"
FT /evidence=experimental
FT /experiment="454 [2-3], Illumina [3]"
FT /similarity="MI0000425"
XX
SQ Sequence 71 BP; 16 A; 13 C; 16 G; 0 T; 26 other;
auuuucugcu gcggaugggg gcaguacugu uuuuuuaaca uugaguauug cacuuuucac 60
agcccgaaaa u 71
//
ID dme-mir-314 standard; RNA; DME; 90 BP.
XX
AC MI0000426;
XX
DE Drosophila melanogaster miR-314 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-314; miR-314.
DR TARGETS:PICTAR-FLY; dme-miR-314; dme-miR-314.
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..28
FT /accession="MIMAT0020840"
FT /product="dme-miR-314-5p"
FT /evidence=not_experimental
FT miRNA 70..90
FT /accession="MIMAT0000406"
FT /product="dme-miR-314-3p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000426"
XX
SQ Sequence 90 BP; 20 A; 19 C; 21 G; 0 T; 30 other;
ucguaacuug uguggcuucg aacuuaccua guugaggaaa acucccaugu cggauuuugu 60
uaccucuggu auucgagcca auaaguucgg 90
//
ID dme-mir-315 standard; RNA; DME; 84 BP.
XX
AC MI0000427;
XX
DE Drosophila melanogaster miR-315 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-315; miR-315.
DR TARGETS:PICTAR-FLY; dme-miR-315; dme-miR-315.
XX
CC Lai et al. predicted this sequence based on conservation in D.
CC pseudoobscura, but did not verify expression [2]. Aravin et al. describe
CC identification and mapping of the ends of the excised sequence by cloning
CC [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0000407"
FT /product="dme-miR-315-5p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [3-4], Illumina [4]"
FT /similarity="MI0000427"
FT miRNA 54..75
FT /accession="MIMAT0020841"
FT /product="dme-miR-315-3p"
FT /evidence=not_experimental
XX
SQ Sequence 84 BP; 25 A; 15 C; 15 G; 0 T; 29 other;
cacuuauaua auuuugauug uugcucagaa agcccucauu guuuaccagu uggcuuucga 60
gcaauaauug aaaccagaua agug 84
//
ID dme-mir-316 standard; RNA; DME; 89 BP.
XX
AC MI0000428;
XX
DE Drosophila melanogaster miR-316 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 12844358.
RA Lai EC, Tomancak P, Williams RW, Rubin GM;
RT "Computational identification of Drosophila microRNA genes";
RL Genome Biol. 4:R42(2003).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-316; miR-316.
DR TARGETS:PICTAR-FLY; dme-miR-316; dme-miR-316.
XX
CC Lai et al. predicted this sequence based on conservation in D.
CC pseudoobscura, but did not verify expression [2]. Aravin et al. describe
CC identification and mapping of the 5' end of the excised sequence by
CC cloning [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000408"
FT /product="dme-miR-316-5p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [3-4], Illumina [4]"
FT /similarity="MI0000428"
FT miRNA 54..75
FT /accession="MIMAT0020842"
FT /product="dme-miR-316-3p"
FT /evidence=not_experimental
XX
SQ Sequence 89 BP; 25 A; 16 C; 18 G; 0 T; 30 other;
aaauucuagu cgauuugucu uuuuccgcuu acuggcguuu caauuccaca acgacaggaa 60
agggaaaaag gcguauuuac uaugaguuu 89
//
ID dme-mir-317 standard; RNA; DME; 92 BP.
XX
AC MI0000429;
XX
DE Drosophila melanogaster miR-317 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-317; miR-317.
DR TARGETS:PICTAR-FLY; dme-miR-317; dme-miR-317.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0020843"
FT /product="dme-miR-317-5p"
FT /evidence=not_experimental
FT miRNA 56..79
FT /accession="MIMAT0000409"
FT /product="dme-miR-317-3p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000429"
XX
SQ Sequence 92 BP; 23 A; 21 C; 25 G; 0 T; 23 other;
augcaacugc cauugggaua cacccugugc ucgcuuugaa ugaaaugcaa gcaagugaac 60
acagcuggug guauccagug gccguuuggc au 92
//
ID dme-mir-318 standard; RNA; DME; 68 BP.
XX
AC MI0000430;
XX
DE Drosophila melanogaster miR-318 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [3]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-318; miR-318.
DR TARGETS:PICTAR-FLY; dme-miR-318; dme-miR-318.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0020844"
FT /product="dme-miR-318-5p"
FT /evidence=not_experimental
FT miRNA 43..64
FT /accession="MIMAT0000410"
FT /product="dme-miR-318-3p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2-3], Illumina [3]"
FT /similarity="MI0000430"
XX
SQ Sequence 68 BP; 16 A; 14 C; 13 G; 0 T; 25 other;
uuuaugggau acacacaguu caguuuuguc acacuucaag caucacuggg cuuuguuuau 60
cucaugag 68
//
ID dme-mir-2c standard; RNA; DME; 102 BP.
XX
AC MI0000431;
XX
DE Drosophila melanogaster miR-2c stem-loop
XX
RN [1]
RX PUBMED; 12812784.
RA Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V;
RT "Temporal regulation of microRNA expression in Drosophila melanogaster
RT mediated by hormonal signals and broad-Complex gene activity";
RL Dev Biol. 259:9-18(2003).
XX
RN [2]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [3]
RX PUBMED; 14691535.
RA Stark A, Brennecke J, Russell RB, Cohen SM;
RT "Identification of Drosophila MicroRNA targets";
RL PLoS Biol. 1:E60(2003).
XX
RN [4]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [5]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-2c; miR-2c.
DR TARGETS:PICTAR-FLY; dme-miR-2c; dme-miR-2c.
XX
CC miR-2c was predicted by similarity to miR-2a (MIR:MI0000117). Expression
CC in Drosophila was independently confirmed by Northern blot analysis [1]
CC and by cloning [2]. The latter study confirmed the ends of the excised
CC miR. Stark et al. [3] have identified targets for miR-2 in Drosophila
CC using computational prediction followed by experimental validation. miR-2
CC regulates the proapoptotic genes reaper, grim and sickle, suggesting that
CC it may be involved in the control of apoptosis.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..44
FT /accession="MIMAT0020845"
FT /product="dme-miR-2c-5p"
FT /evidence=not_experimental
FT miRNA 63..85
FT /accession="MIMAT0000411"
FT /product="dme-miR-2c-3p"
FT /evidence=experimental
FT /experiment="Northern [1], cloned [2], 454 [4-5], Illumina
FT [5]"
FT /similarity="MI0000431"
XX
SQ Sequence 102 BP; 31 A; 19 C; 22 G; 0 T; 30 other;
ucguaucuua cuuucaaugu caucaaaaag ggcugaagaa agauauuucu gcauuugaau 60
cguaucacag ccagcuuuga ugggcauugc aaugagcagc ga 102
//
ID dme-mir-iab-4 standard; RNA; DME; 68 BP.
XX
AC MI0000432;
XX
DE Drosophila melanogaster miR-iab-4 stem-loop
XX
RN [1]
RX PUBMED; 12919683.
RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
RA Gaasterland T, Meyer J, Tuschl T;
RT "The small RNA profile during Drosophila melanogaster development";
RL Dev Cell. 5:337-350(2003).
XX
RN [2]
RX PUBMED; 11504843.
RA Mattick JS, Gagen MJ;
RT "The evolution of controlled multitasked gene networks: the role of
RT introns and other noncoding RNAs in the development of complex organisms";
RL Mol Biol Evol. 18:1611-1630(2001).
XX
RN [3]
RX PUBMED; 17989254.
RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC;
RT "Evolution, biogenesis, expression, and target predictions of a
RT substantially expanded set of Drosophila microRNAs";
RL Genome Res. 17:1850-1864(2007).
XX
RN [4]
RX PUBMED; 17989255.
RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis
RA M;
RT "Systematic discovery and characterization of fly microRNAs using 12
RT Drosophila genomes";
RL Genome Res. 17:1865-1879(2007).
XX
DR TARGETS:MIRTE; miR-iab-4-3p; miR-iab-4-3p.
DR TARGETS:MIRTE; miR-iab-4-5p; miR-iab-4-5p.
DR TARGETS:PICTAR-FLY; dme-miR-iab-4-3p; dme-miR-iab-4-3p.
DR TARGETS:PICTAR-FLY; dme-miR-iab-4-5p; dme-miR-iab-4-5p.
XX
CC iab-4 is a transcript of the Bithorax complex which has been previously
CC shown to contribute to proper formation of abdominal segments [2].
CC Reference [1] identified a miRNA gene within the transcript and mapped the
CC ends of the mature miR sequence by cloning. Excised miR sequences were
CC identified from both arms of the precursor and are named miR-iab-4-5p (5')
CC and miR-iab-4-3p (3') as too few sequences were cloned to decide on which
CC was predominantly expressed.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000412"
FT /product="dme-miR-iab-4-5p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [3-4], Illumina [4]"
FT /similarity="MI0000432"
FT miRNA 41..64
FT /accession="MIMAT0000413"
FT /product="dme-miR-iab-4-3p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [3-4], Illumina [4]"
FT /similarity="MI0000432"
XX
SQ Sequence 68 BP; 20 A; 15 C; 12 G; 0 T; 21 other;
ucguaaacgu auacugaaug uauccugagu guauccuauc cgguauaccu ucaguauacg 60
uaacacga 68
//
ID hsa-let-7g standard; RNA; HSA; 84 BP.
XX
AC MI0000433;
XX
DE Homo sapiens let-7g stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [4]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-let-7g; hsa-let-7g.
DR HGNC; 31485; MIRLET7G.
DR ENTREZGENE; 406890; MIRLET7G.
XX
CC let-7g-3p cloned in [2] has a 1 nt 3' extension (U), which is incompatible
CC with the genome sequence.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0000414"
FT /product="hsa-let-7g-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [4]"
FT /similarity="MI0000137"
FT miRNA 62..82
FT /accession="MIMAT0004584"
FT /product="hsa-let-7g-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 84 BP; 21 A; 18 C; 24 G; 0 T; 21 other;
aggcugaggu aguaguuugu acaguuugag ggucuaugau accacccggu acaggagaua 60
acuguacagg ccacugccuu gcca 84
//
ID hsa-let-7i standard; RNA; HSA; 84 BP.
XX
AC MI0000434;
XX
DE Homo sapiens let-7i stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [4]
RX PUBMED; 17989717.
RA Marton S, Garcia MR, Robello C, Persson H, Trajtenberg F, Pritsch O,
RA Rovira C, Naya H, Dighiero G, Cayota A;
RT "Small RNAs analysis in CLL reveals a deregulation of miRNA expression and
RT novel miRNA candidates of putative relevance in CLL pathogenesis";
RL Leukemia. 22:330-338(2008).
XX
RN [5]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-let-7i; hsa-let-7i.
DR HGNC; 31486; MIRLET7I.
DR ENTREZGENE; 406891; MIRLET7I.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000415"
FT /product="hsa-let-7i-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [5]"
FT /similarity="MI0000138"
FT miRNA 62..83
FT /accession="MIMAT0004585"
FT /product="hsa-let-7i-3p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
XX
SQ Sequence 84 BP; 13 A; 17 C; 28 G; 0 T; 26 other;
cuggcugagg uaguaguuug ugcuguuggu cggguuguga cauugcccgc uguggagaua 60
acugcgcaag cuacugccuu gcua 84
//
ID hsa-mir-1-2 standard; RNA; HSA; 85 BP.
XX
AC MI0000437;
XX
DE Homo sapiens miR-1-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR RFAM; RF00103; mir-1.
DR TARGETS:PICTAR-VERT; hsa-miR-1; hsa-miR-1.
DR HGNC; 31500; MIR1-2.
DR ENTREZGENE; 406905; MIR1-2.
XX
CC Lagos-Quintana et al. [1] reported the cloning of miR-1b, miR-1c and
CC miR-1d. The mature processed miR sequences are identical apart from the
CC 3' residues (A in mir-1b, C in mir-1c and UU in mir-1d). The 3' residues
CC of both miR-1b and miR-1c conflict with the predicted stem-loop precursor
CC sequence shown here and these sequences are not found in current
CC assemblies of human and mouse genomes. It is suggested that polyA
CC polymerase may add 1-3 nts to the 3' end of the mature transcript (Tom
CC Tuschl, pers. comm.). The common 21 nts of the 3 reported miR sequences
CC have been rationalised here and named miR-1. There are 2 pairs of
CC orthologous putative hairpin precursor structures named mir-1-1 (human
CC MIR:MI0000651, mouse MIR:MI0000139), and mir-1-2 (human MIR:MI0000437,
CC mouse MIR:MI0000652). The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0000416"
FT /product="hsa-miR-1-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000652"
XX
SQ Sequence 85 BP; 28 A; 14 C; 15 G; 0 T; 28 other;
accuacucag aguacauacu ucuuuaugua cccauaugaa cauacaaugc uauggaaugu 60
aaagaaguau guauuuuugg uaggc 85
//
ID hsa-mir-15b standard; RNA; HSA; 98 BP.
XX
AC MI0000438;
XX
DE Homo sapiens miR-15b stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-15b; hsa-miR-15b.
DR HGNC; 31544; MIR15B.
DR ENTREZGENE; 406949; MIR15B.
XX
CC This miRNA sequence was predicted based on homology to a verified miRNA
CC from mouse [1]. Michael et al. subsequently verified expression of
CC miR-15b in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0000417"
FT /product="hsa-miR-15b-5p"
FT /evidence=experimental
FT /experiment="cloned [2-5]"
FT miRNA 58..79
FT /accession="MIMAT0004586"
FT /product="hsa-miR-15b-3p"
FT /evidence=experimental
FT /experiment="cloned [4-5]"
XX
SQ Sequence 98 BP; 31 A; 17 C; 19 G; 0 T; 31 other;
uugaggccuu aaaguacugu agcagcacau caugguuuac augcuacagu caagaugcga 60
aucauuauuu gcugcucuag aaauuuaagg aaauucau 98
//
ID hsa-mir-23b standard; RNA; HSA; 97 BP.
XX
AC MI0000439;
XX
DE Homo sapiens miR-23b stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-23b; hsa-miR-23b.
DR HGNC; 31606; MIR23B.
DR ENTREZGENE; 407011; MIR23B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0004587"
FT /product="hsa-miR-23b-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 58..80
FT /accession="MIMAT0000418"
FT /product="hsa-miR-23b-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000141"
XX
SQ Sequence 97 BP; 21 A; 25 C; 24 G; 0 T; 27 other;
cucaggugcu cuggcugcuu ggguuccugg caugcugauu ugugacuuaa gauuaaaauc 60
acauugccag ggauuaccac gcaaccacga ccuuggc 97
//
ID hsa-mir-27b standard; RNA; HSA; 97 BP.
XX
AC MI0000440;
XX
DE Homo sapiens miR-27b stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-27b; hsa-miR-27b.
DR HGNC; 31614; MIR27B.
DR ENTREZGENE; 407019; MIR27B.
XX
CC Lagos-Quintana et al. determined the expression of miR-27b in mouse [1] -
CC a human sequence was predicted based on homology. Michael et al.
CC subsequently verified the expression of this miRNA in human cells [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0004588"
FT /product="hsa-miR-27b-5p"
FT /evidence=experimental
FT /experiment="cloned [4-5]"
FT miRNA 61..81
FT /accession="MIMAT0000419"
FT /product="hsa-miR-27b-3p"
FT /evidence=experimental
FT /experiment="cloned [2-5]"
XX
SQ Sequence 97 BP; 23 A; 19 C; 27 G; 0 T; 28 other;
accucucuaa caaggugcag agcuuagcug auuggugaac agugauuggu uuccgcuuug 60
uucacagugg cuaaguucug caccugaaga gaaggug 97
//
ID hsa-mir-30b standard; RNA; HSA; 88 BP.
XX
AC MI0000441;
XX
DE Homo sapiens miR-30b stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-30b; hsa-miR-30b.
DR HGNC; 31625; MIR30B.
DR ENTREZGENE; 407030; MIR30B.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000420"
FT /product="hsa-miR-30b-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000145"
FT miRNA 55..76
FT /accession="MIMAT0004589"
FT /product="hsa-miR-30b-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 88 BP; 23 A; 17 C; 21 G; 0 T; 27 other;
accaaguuuc aguucaugua aacauccuac acucagcugu aauacaugga uuggcuggga 60
gguggauguu uacuucagcu gacuugga 88
//
ID hsa-mir-122 standard; RNA; HSA; 85 BP.
XX
AC MI0000442;
XX
DE Homo sapiens miR-122 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-122a; hsa-miR-122a.
DR HGNC; 31501; MIR122.
DR ENTREZGENE; 406906; MIR122.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000421"
FT /product="hsa-miR-122-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Northern [2]"
FT /similarity="MI0000256"
FT miRNA 51..72
FT /accession="MIMAT0004590"
FT /product="hsa-miR-122-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 85 BP; 24 A; 18 C; 19 G; 0 T; 24 other;
ccuuagcaga gcuguggagu gugacaaugg uguuuguguc uaaacuauca aacgccauua 60
ucacacuaaa uagcuacugc uaggc 85
//
ID hsa-mir-124-1 standard; RNA; HSA; 85 BP.
XX
AC MI0000443;
XX
DE Homo sapiens miR-124-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-124a; hsa-miR-124a.
DR HGNC; 31502; MIR124-1.
DR ENTREZGENE; 406907; MIR124-1.
XX
CC miR-124 was first identified by cloning studies in mouse [1]. Its
CC expression was later verified in human embryonic stem cells [2]. The
CC mature sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [5]. The 5' end of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0004591"
FT /product="hsa-miR-124-5p"
FT /evidence=experimental
FT /experiment="cloned [5]"
FT miRNA 53..74
FT /accession="MIMAT0000422"
FT /product="hsa-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [2,4-5]"
XX
SQ Sequence 85 BP; 21 A; 21 C; 22 G; 0 T; 21 other;
aggccucucu cuccguguuc acagcggacc uugauuuaaa uguccauaca auuaaggcac 60
gcggugaaug ccaagaaugg ggcug 85
//
ID hsa-mir-124-2 standard; RNA; HSA; 109 BP.
XX
AC MI0000444;
XX
DE Homo sapiens miR-124-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-124a; hsa-miR-124a.
DR HGNC; 31503; MIR124-2.
DR ENTREZGENE; 406908; MIR124-2.
XX
CC miR-124 was first identified by cloning studies in mouse [1]. Its
CC expression was later verified in human embryonic stem cells [2]. The
CC mature sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [5]. The 5' end of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0004591"
FT /product="hsa-miR-124-5p"
FT /evidence=experimental
FT /experiment="cloned [5]"
FT miRNA 62..83
FT /accession="MIMAT0000422"
FT /product="hsa-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [2,4-5]"
XX
SQ Sequence 109 BP; 29 A; 26 C; 28 G; 0 T; 26 other;
aucaagauua gaggcucugc ucuccguguu cacagcggac cuugauuuaa ugucauacaa 60
uuaaggcacg cggugaaugc caagagcgga gccuacggcu gcacuugaa 109
//
ID hsa-mir-124-3 standard; RNA; HSA; 87 BP.
XX
AC MI0000445;
XX
DE Homo sapiens miR-124-3 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-124a; hsa-miR-124a.
DR HGNC; 31504; MIR124-3.
DR ENTREZGENE; 406909; MIR124-3.
XX
CC miR-124 was first identified by cloning studies in mouse [1]. Its
CC expression was later verified in human embryonic stem cells [2]. The
CC mature sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [5]. The 5' end of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0004591"
FT /product="hsa-miR-124-5p"
FT /evidence=experimental
FT /experiment="cloned [5]"
FT miRNA 53..74
FT /accession="MIMAT0000422"
FT /product="hsa-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [2,4-5]"
XX
SQ Sequence 87 BP; 20 A; 23 C; 24 G; 0 T; 20 other;
ugagggcccc ucugcguguu cacagcggac cuugauuuaa ugucuauaca auuaaggcac 60
gcggugaaug ccaagagagg cgccucc 87
//
ID hsa-mir-125b-1 standard; RNA; HSA; 88 BP.
XX
AC MI0000446;
XX
DE Homo sapiens miR-125b-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [3]
RX PUBMED; 15722555.
RA Lee YS, Kim HK, Chung S, Kim KS, Dutta A;
RT "Depletion of human micro-RNA miR-125b reveals that it is critical for the
RT proliferation of differentiated cells but not for the down-regulation of
RT putative targets during differentiation";
RL J Biol Chem. 280:16635-16641(2005).
XX
RN [4]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [7]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-125b; hsa-miR-125b.
DR HGNC; 31506; MIR125B1.
DR ENTREZGENE; 406911; MIR125B1.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1]. Its expression was later verified in human BC-1 cells
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000423"
FT /product="hsa-miR-125b-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4-6], Illumina [7]"
FT /similarity="MI0000725"
FT miRNA 55..76
FT /accession="MIMAT0004592"
FT /product="hsa-miR-125b-1-3p"
FT /evidence=experimental
FT /experiment="cloned [5]"
XX
SQ Sequence 88 BP; 14 A; 24 C; 23 G; 0 T; 27 other;
ugcgcuccuc ucagucccug agacccuaac uugugauguu uaccguuuaa auccacgggu 60
uaggcucuug ggagcugcga gucgugcu 88
//
ID hsa-mir-128-1 standard; RNA; HSA; 82 BP.
XX
AC MI0000447;
XX
DE Homo sapiens miR-128-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-128a; hsa-miR-128a.
DR HGNC; 31510; MIR128-1.
DR ENTREZGENE; 406915; MIR128-1.
XX
CC The most commonly cloned mature sequences derived from the previously
CC annotated mir-128a and mir-128b were shown by Landgraf et al to be
CC identical [3]. The sequences are therefore renamed mir-128-1 and
CC mir-128-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0026477"
FT /product="hsa-miR-128-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 50..70
FT /accession="MIMAT0000424"
FT /product="hsa-miR-128-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [4]"
FT /similarity="MI0000155"
XX
SQ Sequence 82 BP; 13 A; 19 C; 22 G; 0 T; 28 other;
ugagcuguug gauucggggc cguagcacug ucugagaggu uuacauuucu cacagugaac 60
cggucucuuu uucagcugcu uc 82
//
ID hsa-mir-130a standard; RNA; HSA; 89 BP.
XX
AC MI0000448;
XX
DE Homo sapiens miR-130a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-130a; hsa-miR-130a.
DR HGNC; 31514; MIR130A.
DR ENTREZGENE; 406919; MIR130A.
XX
CC miR-130a was first identified by cloning studies in mouse [1]. Its
CC expression was later verified in human embryonic stem cells [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0004593"
FT /product="hsa-miR-130a-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 55..76
FT /accession="MIMAT0000425"
FT /product="hsa-miR-130a-3p"
FT /evidence=experimental
FT /experiment="cloned [2-4], Northern [2]"
XX
SQ Sequence 89 BP; 17 A; 21 C; 24 G; 0 T; 27 other;
ugcugcuggc cagagcucuu uucacauugu gcuacugucu gcaccuguca cuagcagugc 60
aauguuaaaa gggcauuggc cguguagug 89
//
ID hsa-mir-132 standard; RNA; HSA; 101 BP.
XX
AC MI0000449;
XX
DE Homo sapiens miR-132 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-132; hsa-miR-132.
DR HGNC; 31516; MIR132.
DR ENTREZGENE; 406921; MIR132.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0004594"
FT /product="hsa-miR-132-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 59..80
FT /accession="MIMAT0000426"
FT /product="hsa-miR-132-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000158"
XX
SQ Sequence 101 BP; 17 A; 37 C; 29 G; 0 T; 18 other;
ccgcccccgc gucuccaggg caaccguggc uuucgauugu uacuguggga acuggaggua 60
acagucuaca gccauggucg ccccgcagca cgcccacgcg c 101
//
ID hsa-mir-133a-1 standard; RNA; HSA; 88 BP.
XX
AC MI0000450;
XX
DE Homo sapiens miR-133a-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-133a; hsa-miR-133a.
DR HGNC; 31517; MIR133A1.
DR ENTREZGENE; 406922; MIR133A1.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0026478"
FT /product="hsa-miR-133a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 53..74
FT /accession="MIMAT0000427"
FT /product="hsa-miR-133a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000820"
XX
SQ Sequence 88 BP; 24 A; 21 C; 18 G; 0 T; 25 other;
acaaugcuuu gcuagagcug guaaaaugga accaaaucgc cucuucaaug gauuuggucc 60
ccuucaacca gcuguagcua ugcauuga 88
//
ID hsa-mir-133a-2 standard; RNA; HSA; 102 BP.
XX
AC MI0000451;
XX
DE Homo sapiens miR-133a-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-133a; hsa-miR-133a.
DR HGNC; 31518; MIR133A2.
DR ENTREZGENE; 406923; MIR133A2.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1] later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0026478"
FT /product="hsa-miR-133a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 59..80
FT /accession="MIMAT0000427"
FT /product="hsa-miR-133a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000820"
XX
SQ Sequence 102 BP; 25 A; 24 C; 28 G; 0 T; 25 other;
gggagccaaa ugcuuugcua gagcugguaa aauggaacca aaucgacugu ccaauggauu 60
ugguccccuu caaccagcug uagcugugca uugauggcgc cg 102
//
ID hsa-mir-135a-1 standard; RNA; HSA; 90 BP.
XX
AC MI0000452;
XX
DE Homo sapiens miR-135a-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-135a; hsa-miR-135a.
DR HGNC; 31520; MIR135A1.
DR ENTREZGENE; 406925; MIR135A1.
XX
CC miR-135a was first identified by cloning studies in mouse [1]. Its
CC expression was later verified in human embryonic stem cells [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0000428"
FT /product="hsa-miR-135a-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT miRNA 56..77
FT /accession="MIMAT0004595"
FT /product="hsa-miR-135a-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 90 BP; 15 A; 22 C; 25 G; 0 T; 28 other;
aggccucgcu guucucuaug gcuuuuuauu ccuaugugau ucuacugcuc acucauauag 60
ggauuggagc cguggcgcac ggcggggaca 90
//
ID hsa-mir-135a-2 standard; RNA; HSA; 100 BP.
XX
AC MI0000453;
XX
DE Homo sapiens miR-135a-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-135a; hsa-miR-135a.
DR HGNC; 31521; MIR135A2.
DR ENTREZGENE; 406926; MIR135A2.
XX
CC miR-135a was first identified by cloning studies in mouse [1]. Its
CC expression was later verified in human embryonic stem cells [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0000428"
FT /product="hsa-miR-135a-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT miRNA 61..82
FT /accession="MIMAT0037309"
FT /product="hsa-miR-135a-2-3p"
FT /evidence=not_experimental
XX
SQ Sequence 100 BP; 34 A; 13 C; 19 G; 0 T; 34 other;
agauaaauuc acucuagugc uuuauggcuu uuuauuccua ugugauagua auaaagucuc 60
auguagggau ggaagccaug aaauacauug ugaaaaauca 100
//
ID hsa-mir-137 standard; RNA; HSA; 102 BP.
XX
AC MI0000454;
XX
DE Homo sapiens miR-137 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-137; hsa-miR-137.
DR HGNC; 31523; MIR137.
DR ENTREZGENE; 406928; MIR137.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0037310"
FT /product="hsa-miR-137-5p"
FT /evidence=not_experimental
FT miRNA 59..81
FT /accession="MIMAT0000429"
FT /product="hsa-miR-137-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000163"
XX
SQ Sequence 102 BP; 22 A; 19 C; 31 G; 0 T; 30 other;
gguccucuga cucucuucgg ugacggguau ucuugggugg auaauacgga uuacguuguu 60
auugcuuaag aauacgcgua gucgaggaga guaccagcgg ca 102
//
ID hsa-mir-138-2 standard; RNA; HSA; 84 BP.
XX
AC MI0000455;
XX
DE Homo sapiens miR-138-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-138; hsa-miR-138.
DR HGNC; 31525; MIR138-2.
DR ENTREZGENE; 406930; MIR138-2.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..32
FT /accession="MIMAT0000430"
FT /product="hsa-miR-138-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000722"
FT miRNA 57..78
FT /accession="MIMAT0004596"
FT /product="hsa-miR-138-2-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 84 BP; 16 A; 25 C; 23 G; 0 T; 20 other;
cguugcugca gcugguguug ugaaucaggc cgacgagcag cgcauccucu uacccggcua 60
uuucacgaca ccaggguugc auca 84
//
ID hsa-mir-140 standard; RNA; HSA; 100 BP.
XX
AC MI0000456;
XX
DE Homo sapiens miR-140 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-140; hsa-miR-140.
DR HGNC; 31527; MIR140.
DR ENTREZGENE; 406932; MIR140.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1]. Its expression was later verified in human [2,3]. The
CC mature sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [3]. The 5' end of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0000431"
FT /product="hsa-miR-140-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000165"
FT miRNA 62..82
FT /accession="MIMAT0004597"
FT /product="hsa-miR-140-3p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
XX
SQ Sequence 100 BP; 18 A; 27 C; 27 G; 0 T; 28 other;
ugugucucuc ucuguguccu gccagugguu uuacccuaug guagguuacg ucaugcuguu 60
cuaccacagg guagaaccac ggacaggaua ccggggcacc 100
//
ID hsa-mir-141 standard; RNA; HSA; 95 BP.
XX
AC MI0000457;
XX
DE Homo sapiens miR-141 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-141; hsa-miR-141.
DR HGNC; 31528; MIR141.
DR ENTREZGENE; 406933; MIR141.
XX
CC This miRNA sequence was predicted based on homology to a verified miRNA
CC from mouse [1]. Michael et al. subsequently verified expression of
CC miR-141 in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0004598"
FT /product="hsa-miR-141-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 59..80
FT /accession="MIMAT0000432"
FT /product="hsa-miR-141-3p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
XX
SQ Sequence 95 BP; 16 A; 24 C; 29 G; 0 T; 26 other;
cggccggccc uggguccauc uuccaguaca guguuggaug gucuaauugu gaagcuccua 60
acacugucug guaaagaugg cucccgggug gguuc 95
//
ID hsa-mir-142 standard; RNA; HSA; 87 BP.
XX
AC MI0000458;
XX
DE Homo sapiens miR-142 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-142-3p; hsa-miR-142-3p.
DR TARGETS:PICTAR-VERT; hsa-miR-142-5p; hsa-miR-142-5p.
DR HGNC; 31529; MIR142.
DR ENTREZGENE; 406934; MIR142.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1]. Michael et al. verified the expression of a sequence from
CC the 3' arm of this stem-loop (named miR-142-3p here) [2], and both
CC miR-142-5p (from the 5' arm) and miR-142-3p ware later detected in human
CC HL-60 leukemia cells [3]. The mature sequence shown here represents the
CC most commonly cloned form from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0000433"
FT /product="hsa-miR-142-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT /similarity="MI0000167"
FT miRNA 52..74
FT /accession="MIMAT0000434"
FT /product="hsa-miR-142-3p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
XX
SQ Sequence 87 BP; 25 A; 16 C; 23 G; 0 T; 23 other;
gacagugcag ucacccauaa aguagaaagc acuacuaaca gcacuggagg guguaguguu 60
uccuacuuua uggaugagug uacugug 87
//
ID hsa-mir-143 standard; RNA; HSA; 106 BP.
XX
AC MI0000459;
XX
DE Homo sapiens miR-143 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-143; hsa-miR-143.
DR HGNC; 31530; MIR143.
DR ENTREZGENE; 406935; MIR143.
XX
CC This miRNA sequence was predicted based on homology to a verified miRNA
CC from mouse [1]. Michael et al. subsequently verified expression of
CC miR-143 in human, and demonstrated significantly reduced levels of the
CC miRNA in precancerous and neoplastic colorectal tissue [2]. miR-143
CC cloned in [3] has a 1 nt 3' extension (A), which is incompatible with the
CC genome sequence.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..48
FT /accession="MIMAT0004599"
FT /product="hsa-miR-143-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 61..81
FT /accession="MIMAT0000435"
FT /product="hsa-miR-143-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [4]"
XX
SQ Sequence 106 BP; 21 A; 26 C; 35 G; 0 T; 24 other;
gcgcagcgcc cugucuccca gccugaggug cagugcugca ucucugguca guugggaguc 60
ugagaugaag cacuguagcu caggaagaga gaaguuguuc ugcagc 106
//
ID hsa-mir-144 standard; RNA; HSA; 86 BP.
XX
AC MI0000460;
XX
DE Homo sapiens miR-144 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-144; hsa-miR-144.
DR HGNC; 31531; MIR144.
DR ENTREZGENE; 406936; MIR144.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1]. The expression of this miRNA has not been verified in
CC human. The mature sequence shown here represents the most commonly cloned
CC form from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0004600"
FT /product="hsa-miR-144-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 52..71
FT /accession="MIMAT0000436"
FT /product="hsa-miR-144-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000168"
XX
SQ Sequence 86 BP; 21 A; 20 C; 23 G; 0 T; 22 other;
uggggcccug gcugggauau caucauauac uguaaguuug cgaugagaca cuacaguaua 60
gaugauguac uaguccgggc accccc 86
//
ID hsa-mir-145 standard; RNA; HSA; 88 BP.
XX
AC MI0000461;
XX
DE Homo sapiens miR-145 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-145; hsa-miR-145.
DR HGNC; 31532; MIR145.
DR ENTREZGENE; 406937; MIR145.
XX
CC This miRNA sequence was predicted based on homology to a verified miRNA
CC from mouse [1]. Michael et al. subsequently verified expression of
CC miR-145 in human, and demonstrated significantly reduced levels of the
CC miRNA in precancerous and neoplastic colorectal tissue [2]. The mature
CC sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000437"
FT /product="hsa-miR-145-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
FT miRNA 54..75
FT /accession="MIMAT0004601"
FT /product="hsa-miR-145-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 88 BP; 18 A; 21 C; 21 G; 0 T; 28 other;
caccuugucc ucacggucca guuuucccag gaaucccuua gaugcuaaga uggggauucc 60
uggaaauacu guucuugagg ucaugguu 88
//
ID hsa-mir-152 standard; RNA; HSA; 87 BP.
XX
AC MI0000462;
XX
DE Homo sapiens miR-152 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [4]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
RN [5]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-152; hsa-miR-152.
DR HGNC; 31538; MIR152.
DR ENTREZGENE; 406943; MIR152.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0026479"
FT /product="hsa-miR-152-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 54..74
FT /accession="MIMAT0000438"
FT /product="hsa-miR-152-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [4-5]"
FT /similarity="MI0000174"
XX
SQ Sequence 87 BP; 16 A; 29 C; 26 G; 0 T; 16 other;
uguccccccc ggcccagguu cugugauaca cuccgacucg ggcucuggag cagucagugc 60
augacagaac uugggcccgg aaggacc 87
//
ID hsa-mir-153-1 standard; RNA; HSA; 90 BP.
XX
AC MI0000463;
XX
DE Homo sapiens miR-153-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-153; hsa-miR-153.
DR HGNC; 31539; MIR153-1.
DR ENTREZGENE; 406944; MIR153-1.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..75
FT /accession="MIMAT0000439"
FT /product="hsa-miR-153-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000175"
XX
SQ Sequence 90 BP; 20 A; 21 C; 21 G; 0 T; 28 other;
cucacagcug ccagugucau uuuugugauc ugcagcuagu auucucacuc caguugcaua 60
gucacaaaag ugaucauugg cagguguggc 90
//
ID hsa-mir-153-2 standard; RNA; HSA; 87 BP.
XX
AC MI0000464;
XX
DE Homo sapiens miR-153-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-153; hsa-miR-153.
DR HGNC; 31540; MIR153-2.
DR ENTREZGENE; 406945; MIR153-2.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0026480"
FT /product="hsa-miR-153-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 53..74
FT /accession="MIMAT0000439"
FT /product="hsa-miR-153-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000175"
XX
SQ Sequence 87 BP; 23 A; 14 C; 24 G; 0 T; 26 other;
agcgguggcc agugucauuu uugugauguu gcagcuagua auaugagccc aguugcauag 60
ucacaaaagu gaucauugga aacugug 87
//
ID hsa-mir-191 standard; RNA; HSA; 92 BP.
XX
AC MI0000465;
XX
DE Homo sapiens miR-191 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-191; hsa-miR-191.
DR HGNC; 31561; MIR191.
DR ENTREZGENE; 406966; MIR191.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1]. The expression of this miRNA was later confirmed in human
CC HL-60 leukemia cells [2]. The mature sequence shown here represents the
CC most commonly cloned form from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000440"
FT /product="hsa-miR-191-5p"
FT /evidence=experimental
FT /experiment="cloned [2-5]"
FT /similarity="MI0000233"
FT miRNA 58..79
FT /accession="MIMAT0001618"
FT /product="hsa-miR-191-3p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
XX
SQ Sequence 92 BP; 16 A; 31 C; 24 G; 0 T; 21 other;
cggcuggaca gcgggcaacg gaaucccaaa agcagcuguu gucuccagag cauuccagcu 60
gcgcuuggau uucguccccu gcucuccugc cu 92
//
ID hsa-mir-9-1 standard; RNA; HSA; 89 BP.
XX
AC MI0000466;
XX
DE Homo sapiens miR-9-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-9; hsa-miR-9.
DR TARGETS:PICTAR-VERT; hsa-miR-9*; hsa-miR-9*.
DR HGNC; 31641; MIR9-1.
DR ENTREZGENE; 407046; MIR9-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000441"
FT /product="hsa-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000720"
FT miRNA 55..76
FT /accession="MIMAT0000442"
FT /product="hsa-miR-9-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000720"
XX
SQ Sequence 89 BP; 25 A; 13 C; 23 G; 0 T; 28 other;
cgggguuggu uguuaucuuu gguuaucuag cuguaugagu gguguggagu cuucauaaag 60
cuagauaacc gaaaguaaaa auaacccca 89
//
ID hsa-mir-9-2 standard; RNA; HSA; 87 BP.
XX
AC MI0000467;
XX
DE Homo sapiens miR-9-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-9; hsa-miR-9.
DR TARGETS:PICTAR-VERT; hsa-miR-9*; hsa-miR-9*.
DR HGNC; 31642; MIR9-2.
DR ENTREZGENE; 407047; MIR9-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000441"
FT /product="hsa-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000157"
FT miRNA 53..74
FT /accession="MIMAT0000442"
FT /product="hsa-miR-9-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000157"
XX
SQ Sequence 87 BP; 26 A; 13 C; 19 G; 0 T; 29 other;
ggaagcgagu uguuaucuuu gguuaucuag cuguaugagu guauuggucu ucauaaagcu 60
agauaaccga aaguaaaaac uccuuca 87
//
ID hsa-mir-9-3 standard; RNA; HSA; 90 BP.
XX
AC MI0000468;
XX
DE Homo sapiens miR-9-3 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-9; hsa-miR-9.
DR TARGETS:PICTAR-VERT; hsa-miR-9*; hsa-miR-9*.
DR HGNC; 31646; MIR9-3.
DR ENTREZGENE; 407051; MIR9-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000441"
FT /product="hsa-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000721"
FT miRNA 55..76
FT /accession="MIMAT0000442"
FT /product="hsa-miR-9-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000721"
XX
SQ Sequence 90 BP; 25 A; 19 C; 21 G; 0 T; 25 other;
ggaggcccgu uucucucuuu gguuaucuag cuguaugagu gccacagagc cgucauaaag 60
cuagauaacc gaaaguagaa augauucuca 90
//
ID hsa-mir-125a standard; RNA; HSA; 86 BP.
XX
AC MI0000469;
XX
DE Homo sapiens miR-125a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-125a; hsa-miR-125a.
DR HGNC; 31505; MIR125A.
DR ENTREZGENE; 406910; MIR125A.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0000443"
FT /product="hsa-miR-125a-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000151"
FT miRNA 53..74
FT /accession="MIMAT0004602"
FT /product="hsa-miR-125a-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
XX
SQ Sequence 86 BP; 14 A; 24 C; 27 G; 0 T; 21 other;
ugccagucuc uaggucccug agacccuuua accugugagg acauccaggg ucacagguga 60
gguucuuggg agccuggcgu cuggcc 86
//
ID hsa-mir-125b-2 standard; RNA; HSA; 89 BP.
XX
AC MI0000470;
XX
DE Homo sapiens miR-125b-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [3]
RX PUBMED; 15722555.
RA Lee YS, Kim HK, Chung S, Kim KS, Dutta A;
RT "Depletion of human micro-RNA miR-125b reveals that it is critical for the
RT proliferation of differentiated cells but not for the down-regulation of
RT putative targets during differentiation";
RL J Biol Chem. 280:16635-16641(2005).
XX
RN [4]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [7]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-125b; hsa-miR-125b.
DR HGNC; 31507; MIR125B2.
DR ENTREZGENE; 406912; MIR125B2.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1]. Its expression was later verified in human BC-1 cells
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000423"
FT /product="hsa-miR-125b-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4-6], Illumina [7]"
FT /similarity="MI0000725"
FT miRNA 54..75
FT /accession="MIMAT0004603"
FT /product="hsa-miR-125b-2-3p"
FT /evidence=experimental
FT /experiment="cloned [5]"
XX
SQ Sequence 89 BP; 22 A; 21 C; 23 G; 0 T; 23 other;
accagacuuu uccuaguccc ugagacccua acuugugagg uauuuuagua acaucacaag 60
ucaggcucuu gggaccuagg cggagggga 89
//
ID hsa-mir-126 standard; RNA; HSA; 85 BP.
XX
AC MI0000471;
XX
DE Homo sapiens miR-126 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-126; hsa-miR-126.
DR TARGETS:PICTAR-VERT; hsa-miR-126*; hsa-miR-126*.
DR HGNC; 31508; MIR126.
DR ENTREZGENE; 406913; MIR126.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0000444"
FT /product="hsa-miR-126-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000153"
FT miRNA 52..73
FT /accession="MIMAT0000445"
FT /product="hsa-miR-126-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000153"
XX
SQ Sequence 85 BP; 19 A; 23 C; 22 G; 0 T; 21 other;
cgcuggcgac gggacauuau uacuuuuggu acgcgcugug acacuucaaa cucguaccgu 60
gaguaauaau gcgccgucca cggca 85
//
ID hsa-mir-127 standard; RNA; HSA; 97 BP.
XX
AC MI0000472;
XX
DE Homo sapiens miR-127 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 18230126.
RA Afanasyeva EA, Hotz-Wagenblatt A, Glatting KH, Westermann F;
RT "New miRNAs cloned from neuroblastoma";
RL BMC Genomics. 9:52(2008).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-127; hsa-miR-127.
DR HGNC; 31509; MIR127.
DR ENTREZGENE; 406914; MIR127.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1]. The expression of this miRNA was later confirmed by
CC cloning in human cells [2,3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0004604"
FT /product="hsa-miR-127-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT miRNA 57..78
FT /accession="MIMAT0000446"
FT /product="hsa-miR-127-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000899"
XX
SQ Sequence 97 BP; 20 A; 25 C; 26 G; 0 T; 26 other;
ugugaucacu gucuccagcc ugcugaagcu cagagggcuc ugauucagaa agaucaucgg 60
auccgucuga gcuuggcugg ucggaagucu caucauc 97
//
ID hsa-mir-129-2 standard; RNA; HSA; 90 BP.
XX
AC MI0000473;
XX
DE Homo sapiens miR-129-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-129; hsa-miR-129.
DR HGNC; 31513; MIR129-2.
DR ENTREZGENE; 406918; MIR129-2.
XX
CC This miRNA sequence was predicted based on homology to a verified miRNA
CC cloned from mouse cerebellum [1]. Expression of this miRNA was
CC subsequently verified in a human osteoblast sarcoma cell line [2].
CC Reference [2] named the human/mouse conserved sequence miR-129b, but
CC subsequent genome searches suggest that the same mature sequence may be
CC expressed from two predicted hairpin precursors in both human (this entry
CC and MIR:MI0000252) and mouse (MIR:MI0000222 and MIR:MI0000585). Landgraf
CC et al. show that the 5' product of mir-129-1 (MIR:MI0000222) is the
CC predominant one, whereas both 5' and 3' products are significantly
CC expressed from mir-129-2 (this entry) [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0000242"
FT /product="hsa-miR-129-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT miRNA 57..78
FT /accession="MIMAT0004605"
FT /product="hsa-miR-129-2-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 90 BP; 19 A; 25 C; 23 G; 0 T; 23 other;
ugcccuucgc gaaucuuuuu gcggucuggg cuugcuguac auaacucaau agccggaagc 60
ccuuacccca aaaagcauuu gcggagggcg 90
//
ID hsa-mir-134 standard; RNA; HSA; 73 BP.
XX
AC MI0000474;
XX
DE Homo sapiens miR-134 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-134; hsa-miR-134.
DR HGNC; 31519; MIR134.
DR ENTREZGENE; 406924; MIR134.
XX
CC miR-134 was first identified by cloning studies in mouse [1]. Its
CC expression was later verified in human embryonic stem cells [2]. The
CC mature sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0000447"
FT /product="hsa-miR-134-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4], Illumina [5]"
FT miRNA 46..68
FT /accession="MIMAT0026481"
FT /product="hsa-miR-134-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 73 BP; 13 A; 22 C; 22 G; 0 T; 16 other;
cagggugugu gacugguuga ccagaggggc augcacugug uucacccugu gggccaccua 60
gucaccaacc cuc 73
//
ID hsa-mir-136 standard; RNA; HSA; 82 BP.
XX
AC MI0000475;
XX
DE Homo sapiens miR-136 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-136; hsa-miR-136.
DR HGNC; 31522; MIR136.
DR ENTREZGENE; 406927; MIR136.
XX
CC miR-136 was first identified by cloning studies in mouse [1]. Its
CC expression was later verified in human embryonic stem cells [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0000448"
FT /product="hsa-miR-136-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
FT miRNA 49..70
FT /accession="MIMAT0004606"
FT /product="hsa-miR-136-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 82 BP; 16 A; 18 C; 19 G; 0 T; 29 other;
ugagcccucg gaggacucca uuuguuuuga ugauggauuc uuaugcucca ucaucgucuc 60
aaaugagucu ucagaggguu cu 82
//
ID hsa-mir-138-1 standard; RNA; HSA; 99 BP.
XX
AC MI0000476;
XX
DE Homo sapiens miR-138-1 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-138; hsa-miR-138.
DR HGNC; 31524; MIR138-1.
DR ENTREZGENE; 406929; MIR138-1.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1]. Expression in human was later validated by cloning [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0000430"
FT /product="hsa-miR-138-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000722"
FT miRNA 63..84
FT /accession="MIMAT0004607"
FT /product="hsa-miR-138-1-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 99 BP; 23 A; 28 C; 30 G; 0 T; 18 other;
cccuggcaug gugugguggg gcagcuggug uugugaauca ggccguugcc aaucagagaa 60
cggcuacuuc acaacaccag ggccacacca cacuacagg 99
//
ID hsa-mir-146a standard; RNA; HSA; 99 BP.
XX
AC MI0000477;
XX
DE Homo sapiens miR-146a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 31533; MIR146A.
DR ENTREZGENE; 406938; MIR146A.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1]. Its expression was later verified in human [2,3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0000449"
FT /product="hsa-miR-146a-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000170"
FT miRNA 57..78
FT /accession="MIMAT0004608"
FT /product="hsa-miR-146a-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 99 BP; 20 A; 22 C; 23 G; 0 T; 34 other;
ccgaugugua uccucagcuu ugagaacuga auuccauggg uugugucagu gucagaccuc 60
ugaaauucag uucuucagcu gggauaucuc ugucaucgu 99
//
ID hsa-mir-149 standard; RNA; HSA; 89 BP.
XX
AC MI0000478;
XX
DE Homo sapiens miR-149 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-149; hsa-miR-149.
DR HGNC; 31536; MIR149.
DR ENTREZGENE; 406941; MIR149.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0000450"
FT /product="hsa-miR-149-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000171"
FT miRNA 56..76
FT /accession="MIMAT0004609"
FT /product="hsa-miR-149-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 89 BP; 9 A; 25 C; 39 G; 0 T; 16 other;
gccggcgccc gagcucuggc uccgugucuu cacucccgug cuuguccgag gagggaggga 60
gggacggggg cugugcuggg gcagcugga 89
//
ID hsa-mir-150 standard; RNA; HSA; 84 BP.
XX
AC MI0000479;
XX
DE Homo sapiens miR-150 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-150; hsa-miR-150.
DR HGNC; 31537; MIR150.
DR ENTREZGENE; 406942; MIR150.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000451"
FT /product="hsa-miR-150-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000172"
FT miRNA 51..72
FT /accession="MIMAT0004610"
FT /product="hsa-miR-150-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 84 BP; 13 A; 30 C; 26 G; 0 T; 15 other;
cuccccaugg cccugucucc caacccuugu accagugcug ggcucagacc cugguacagg 60
ccugggggac agggaccugg ggac 84
//
ID hsa-mir-154 standard; RNA; HSA; 84 BP.
XX
AC MI0000480;
XX
DE Homo sapiens miR-154 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-154; hsa-miR-154.
DR TARGETS:PICTAR-VERT; hsa-miR-154*; hsa-miR-154*.
DR HGNC; 31541; MIR154.
DR ENTREZGENE; 406946; MIR154.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000452"
FT /product="hsa-miR-154-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT /similarity="MI0000176"
FT miRNA 51..72
FT /accession="MIMAT0000453"
FT /product="hsa-miR-154-3p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Northern [2]"
FT /similarity="MI0000176"
XX
SQ Sequence 84 BP; 19 A; 16 C; 18 G; 0 T; 31 other;
gugguacuug aagauagguu auccguguug ccuucgcuuu auuugugacg aaucauacac 60
gguugaccua uuuuucagua ccaa 84
//
ID hsa-mir-184 standard; RNA; HSA; 84 BP.
XX
AC MI0000481;
XX
DE Homo sapiens miR-184 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-184; hsa-miR-184.
DR HGNC; 31555; MIR184.
DR ENTREZGENE; 406960; MIR184.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0000454"
FT /product="hsa-miR-184"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000226"
XX
SQ Sequence 84 BP; 19 A; 19 C; 22 G; 0 T; 24 other;
ccagucacgu ccccuuauca cuuuuccagc ccagcuuugu gacuguaagu guuggacgga 60
gaacugauaa ggguagguga uuga 84
//
ID hsa-mir-185 standard; RNA; HSA; 82 BP.
XX
AC MI0000482;
XX
DE Homo sapiens miR-185 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [5]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-185; hsa-miR-185.
DR HGNC; 31556; MIR185.
DR ENTREZGENE; 406961; MIR185.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1]. Its expression was later verified in human BC-1 cells
CC [2]. The mature sequence shown here represents the most commonly cloned
CC form from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000455"
FT /product="hsa-miR-185-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4], Illumina [5]"
FT /similarity="MI0000227"
FT miRNA 50..71
FT /accession="MIMAT0004611"
FT /product="hsa-miR-185-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 82 BP; 12 A; 25 C; 27 G; 0 T; 18 other;
agggggcgag ggauuggaga gaaaggcagu uccugauggu ccccucccca ggggcuggcu 60
uuccucuggu ccuucccucc ca 82
//
ID hsa-mir-186 standard; RNA; HSA; 86 BP.
XX
AC MI0000483;
XX
DE Homo sapiens miR-186 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-186; hsa-miR-186.
DR HGNC; 31557; MIR186.
DR ENTREZGENE; 406962; MIR186.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse. Expression of this miRNA was also verified in a human
CC osteoblast sarcoma cell line [1]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000456"
FT /product="hsa-miR-186-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
FT miRNA 54..75
FT /accession="MIMAT0004612"
FT /product="hsa-miR-186-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 86 BP; 18 A; 13 C; 18 G; 0 T; 37 other;
ugcuuguaac uuuccaaaga auucuccuuu ugggcuuucu gguuuuauuu uaagcccaaa 60
ggugaauuuu uugggaaguu ugagcu 86
//
ID hsa-mir-188 standard; RNA; HSA; 86 BP.
XX
AC MI0000484;
XX
DE Homo sapiens miR-188 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 18230126.
RA Afanasyeva EA, Hotz-Wagenblatt A, Glatting KH, Westermann F;
RT "New miRNAs cloned from neuroblastoma";
RL BMC Genomics. 9:52(2008).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-188; hsa-miR-188.
DR HGNC; 31559; MIR188.
DR ENTREZGENE; 406964; MIR188.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2]. The mature sequence shown
CC here represents the most commonly cloned form from large-scale cloning
CC studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0000457"
FT /product="hsa-miR-188-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000230"
FT miRNA 54..74
FT /accession="MIMAT0004613"
FT /product="hsa-miR-188-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
XX
SQ Sequence 86 BP; 15 A; 27 C; 23 G; 0 T; 21 other;
ugcucccucu cucacauccc uugcauggug gagggugagc uuucugaaaa ccccucccac 60
augcaggguu ugcaggaugg cgagcc 86
//
ID hsa-mir-190a standard; RNA; HSA; 85 BP.
XX
AC MI0000486;
XX
DE Homo sapiens miR-190a stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-190; hsa-miR-190.
DR HGNC; 31560; MIR190.
DR ENTREZGENE; 406965; MIR190.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000458"
FT /product="hsa-miR-190a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000232"
FT miRNA 52..72
FT /accession="MIMAT0026482"
FT /product="hsa-miR-190a-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 85 BP; 22 A; 15 C; 14 G; 0 T; 34 other;
ugcaggccuc ugugugauau guuugauaua uuagguuguu auuuaaucca acuauauauc 60
aaacauauuc cuacaguguc uugcc 85
//
ID hsa-mir-193a standard; RNA; HSA; 88 BP.
XX
AC MI0000487;
XX
DE Homo sapiens miR-193a stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 31563; MIR193A.
DR ENTREZGENE; 406968; MIR193A.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0004614"
FT /product="hsa-miR-193a-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT miRNA 55..76
FT /accession="MIMAT0000459"
FT /product="hsa-miR-193a-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000235"
XX
SQ Sequence 88 BP; 15 A; 22 C; 34 G; 0 T; 17 other;
cgaggauggg agcugagggc ugggucuuug cgggcgagau gagggugucg gaucaacugg 60
ccuacaaagu cccaguucuc ggcccccg 88
//
ID hsa-mir-194-1 standard; RNA; HSA; 85 BP.
XX
AC MI0000488;
XX
DE Homo sapiens miR-194-1 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-194; hsa-miR-194.
DR HGNC; 31564; MIR194-1.
DR ENTREZGENE; 406969; MIR194-1.
XX
CC This miRNA sequence was predicted based on homology to a verified miRNA
CC from mouse [1]. Michael et al. subsequently verified expression of
CC miR-194 in human [2]. Two putative pairs of orthologous hairpin
CC precursors structures are found in mouse (mir-194-1 (MIR:MI0000236) on
CC chromosome 1, and mir-194-2 (MIR:MI0000733) on chromosome 19) and human
CC (mir-194-1 (MIR:MI0000488) on chromosome 1, and mir-194-2 (MIR:MI0000732)
CC on chromosome 11).
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000460"
FT /product="hsa-miR-194-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
XX
SQ Sequence 85 BP; 22 A; 15 C; 20 G; 0 T; 28 other;
augguguuau caaguguaac agcaacucca uguggacugu guaccaauuu ccaguggaga 60
ugcuguuacu uuugaugguu accaa 85
//
ID hsa-mir-195 standard; RNA; HSA; 87 BP.
XX
AC MI0000489;
XX
DE Homo sapiens miR-195 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-195; hsa-miR-195.
DR HGNC; 31566; MIR195.
DR ENTREZGENE; 406971; MIR195.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0000461"
FT /product="hsa-miR-195-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000237"
FT miRNA 53..74
FT /accession="MIMAT0004615"
FT /product="hsa-miR-195-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 87 BP; 19 A; 21 C; 28 G; 0 T; 19 other;
agcuucccug gcucuagcag cacagaaaua uuggcacagg gaagcgaguc ugccaauauu 60
ggcugugcug cuccaggcag gguggug 87
//
ID hsa-mir-206 standard; RNA; HSA; 86 BP.
XX
AC MI0000490;
XX
DE Homo sapiens miR-206 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-206; hsa-miR-206.
DR HGNC; 31584; MIR206.
DR ENTREZGENE; 406989; MIR206.
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from mouse [1], later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0000462"
FT /product="hsa-miR-206"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000249"
XX
SQ Sequence 86 BP; 18 A; 17 C; 22 G; 0 T; 29 other;
ugcuucccga ggccacaugc uucuuuauau ccccauaugg auuacuuugc uauggaaugu 60
aaggaagugu gugguuucgg caagug 86
//
ID cbr-let-7 standard; RNA; CBR; 87 BP.
XX
AC MI0000491;
XX
DE Caenorhabditis briggsae let-7 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1,2]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0000463"
FT /product="cbr-let-7"
FT /evidence=not_experimental
FT /similarity="MI0000001"
XX
SQ Sequence 87 BP; 23 A; 15 C; 23 G; 0 T; 26 other;
acugggguac ggugagguag uagguuguau aguuuagaau auuacucucg gugaacuaug 60
caaguuucua ccucaccgaa uaccagg 87
//
ID cbr-lin-4 standard; RNA; CBR; 94 BP.
XX
AC MI0000492;
XX
DE Caenorhabditis briggsae lin-4 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1,2]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0000464"
FT /product="cbr-lin-4"
FT /evidence=not_experimental
FT /similarity="MI0000002"
XX
SQ Sequence 94 BP; 16 A; 27 C; 27 G; 0 T; 24 other;
aucagaugcu uucggccugu ucccugagac cucaagugug agcguucuga acaugcuuca 60
cgccugggcu cuccggguac caggacgguc ugag 94
//
ID cbr-mir-1 standard; RNA; CBR; 94 BP.
XX
AC MI0000493;
XX
DE Caenorhabditis briggsae miR-1 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1,2]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..76
FT /accession="MIMAT0000465"
FT /product="cbr-miR-1"
FT /evidence=not_experimental
FT /similarity="MI0000003"
XX
SQ Sequence 94 BP; 27 A; 18 C; 24 G; 0 T; 25 other;
ugcugugccg agcugcauac uuccuuacau gcccauacug uacugugaau ggauauggaa 60
uguaaagaag uauguagaac ggaaucuaac ggcg 94
//
ID cbr-mir-34 standard; RNA; CBR; 93 BP.
XX
AC MI0000494;
XX
DE Caenorhabditis briggsae miR-34 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0000466"
FT /product="cbr-miR-34"
FT /evidence=not_experimental
FT /similarity="MI0000005"
XX
SQ Sequence 93 BP; 21 A; 26 C; 24 G; 0 T; 22 other;
aagcacucau ggucgugagg cagugugguu agcugguugc auacacaggu ugacaacggc 60
uaccuucacu gccaccccga acauguaguc cuc 93
//
ID cbr-mir-42 standard; RNA; CBR; 96 BP.
XX
AC MI0000495;
XX
DE Caenorhabditis briggsae miR-42 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..80
FT /accession="MIMAT0000467"
FT /product="cbr-miR-42"
FT /evidence=not_experimental
FT /similarity="MI0000013"
XX
SQ Sequence 96 BP; 18 A; 22 C; 24 G; 0 T; 32 other;
uaacccuugu cggaccuuug uggguguucg ccuuuucggu gaaguuacug aaugcuucuu 60
caccggguua acaucuacag agguccuaaa ggguuc 96
//
ID cbr-mir-43 standard; RNA; CBR; 95 BP.
XX
AC MI0000496;
XX
DE Caenorhabditis briggsae miR-43 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..79
FT /accession="MIMAT0000468"
FT /product="cbr-miR-43"
FT /evidence=not_experimental
FT /similarity="MI0000014"
XX
SQ Sequence 95 BP; 23 A; 18 C; 25 G; 0 T; 29 other;
aggcgauucu gcccgugaca ucaagaugcu ugugauuaug cgaaaauguu gggacauauc 60
acaguuuacu ugcugucgca ggcggauuau ugcua 95
//
ID cbr-mir-44 standard; RNA; CBR; 95 BP.
XX
AC MI0000497;
XX
DE Caenorhabditis briggsae miR-44 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..81
FT /accession="MIMAT0000469"
FT /product="cbr-miR-44"
FT /evidence=not_experimental
FT /similarity="MI0000015"
XX
SQ Sequence 95 BP; 27 A; 20 C; 25 G; 0 T; 23 other;
gagaagggcc gaucuggaug ugcucguuag ucauagacga aucacacuug aaaggucaua 60
ugacuagaga cacauucagc uuggccugga ucuca 95
//
ID cbr-mir-45-1 standard; RNA; CBR; 82 BP.
XX
AC MI0000498;
XX
DE Caenorhabditis briggsae miR-45-1 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 55..75
FT /accession="MIMAT0000470"
FT /product="cbr-miR-45"
FT /evidence=not_experimental
FT /similarity="MI0000016"
XX
SQ Sequence 82 BP; 20 A; 21 C; 19 G; 0 T; 22 other;
agugccacgc uggaugugcu cguuagucau aguaaccuca ucaauucagg cuuaugacua 60
gagacacauu cagcuuggcg cc 82
//
ID cbr-mir-45-2 standard; RNA; CBR; 82 BP.
XX
AC MI0000499;
XX
DE Caenorhabditis briggsae miR-45-2 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 55..75
FT /accession="MIMAT0000470"
FT /product="cbr-miR-45"
FT /evidence=not_experimental
FT /similarity="MI0000016"
XX
SQ Sequence 82 BP; 20 A; 20 C; 19 G; 0 T; 23 other;
agugccacgc uggauguguu cguuagucau aguaaccuca ucaauucagg cuuaugacua 60
gagacacauu cagcuuggcg cc 82
//
ID cbr-mir-46 standard; RNA; CBR; 94 BP.
XX
AC MI0000500;
XX
DE Caenorhabditis briggsae miR-46 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 58..79
FT /accession="MIMAT0000471"
FT /product="cbr-miR-46"
FT /evidence=not_experimental
FT /similarity="MI0000017"
XX
SQ Sequence 94 BP; 23 A; 18 C; 24 G; 0 T; 29 other;
gagauacaag ugaagcugaa gagagccguc uauugacagu ucgcuuguuu caugugcugu 60
cauggagucg cucucuucag augaucugaa ucua 94
//
ID cbr-mir-47 standard; RNA; CBR; 93 BP.
XX
AC MI0000501;
XX
DE Caenorhabditis briggsae miR-47 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..78
FT /accession="MIMAT0000472"
FT /product="cbr-miR-47"
FT /evidence=not_experimental
FT /similarity="MI0000018"
XX
SQ Sequence 93 BP; 19 A; 20 C; 25 G; 0 T; 29 other;
uagcugagga agacugaagg gagcuuucuu uugacaguuc gauuucgaac ucuuacuguc 60
auggaggcgc ucucuucagg ugaacucugg cuc 93
//
ID cbr-mir-48 standard; RNA; CBR; 95 BP.
XX
AC MI0000502;
XX
DE Caenorhabditis briggsae miR-48 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..40
FT /accession="MIMAT0000473"
FT /product="cbr-miR-48"
FT /evidence=not_experimental
FT /similarity="MI0000019"
XX
SQ Sequence 95 BP; 20 A; 27 C; 22 G; 0 T; 26 other;
agaaccauuc gggauguuga gguaggcuca guagaugcga ggagauccac cauuccucac 60
aucgucuguc cuaacucgcc uucccuugug cuuca 95
//
ID cbr-mir-49 standard; RNA; CBR; 96 BP.
XX
AC MI0000503;
XX
DE Caenorhabditis briggsae miR-49 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..82
FT /accession="MIMAT0000474"
FT /product="cbr-miR-49"
FT /evidence=not_experimental
FT /similarity="MI0000020"
XX
SQ Sequence 96 BP; 21 A; 25 C; 24 G; 0 T; 26 other;
accgaaacca uuugccaucc gcaguuuuuu guagugugcu ccgcgccauc uuagugcccg 60
aagcaccacg agaagcugca gauggaaguu uugguu 96
//
ID cbr-mir-50 standard; RNA; CBR; 101 BP.
XX
AC MI0000504;
XX
DE Caenorhabditis briggsae miR-50 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..41
FT /accession="MIMAT0000475"
FT /product="cbr-miR-50"
FT /evidence=not_experimental
FT /similarity="MI0000021"
XX
SQ Sequence 101 BP; 22 A; 21 C; 26 G; 0 T; 32 other;
uuccacccac cggccgcuga uaugucugau auucuugggu uaucugauaa ugauuguugu 60
aacucaagua uuagacguau cgacggccgg cuggguugga a 101
//
ID cbr-mir-52 standard; RNA; CBR; 98 BP.
XX
AC MI0000505;
XX
DE Caenorhabditis briggsae miR-52 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1,2]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..42
FT /accession="MIMAT0000476"
FT /product="cbr-miR-52"
FT /evidence=not_experimental
FT /similarity="MI0000023"
XX
SQ Sequence 98 BP; 23 A; 28 C; 23 G; 0 T; 24 other;
uuucccgcuc ugacagucca cccguacaua uguuuccgug cuugacauag agcucaauca 60
cgauacaaug agcggguagc cggucaucga gucggaac 98
//
ID cbr-mir-57 standard; RNA; CBR; 90 BP.
XX
AC MI0000507;
XX
DE Caenorhabditis briggsae miR-57 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0000477"
FT /product="cbr-miR-57"
FT /evidence=not_experimental
FT /similarity="MI0000028"
XX
SQ Sequence 90 BP; 23 A; 18 C; 25 G; 0 T; 24 other;
gcucugaguu cgucuacccu guagaucgag cuguguguuc ugaaguauca uacacgagcu 60
agacuacuag gugaacgaug gaauggagca 90
//
ID cbr-mir-58a standard; RNA; CBR; 84 BP.
XX
AC MI0000508;
XX
DE Caenorhabditis briggsae miR-58 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 59..80
FT /accession="MIMAT0000478"
FT /product="cbr-miR-58a"
FT /evidence=not_experimental
FT /similarity="MI0000029"
XX
SQ Sequence 84 BP; 27 A; 18 C; 13 G; 0 T; 26 other;
auccauugcc cuacuauucg caucucauca cuccaguaua uauauauaua uauaaggaug 60
agaucguuca guacggcaau ggaa 84
//
ID cbr-mir-60 standard; RNA; CBR; 72 BP.
XX
AC MI0000509;
XX
DE Caenorhabditis briggsae miR-60 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1,2]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 46..68
FT /accession="MIMAT0000479"
FT /product="cbr-miR-60"
FT /evidence=not_experimental
FT /similarity="MI0000031"
XX
SQ Sequence 72 BP; 23 A; 15 C; 14 G; 0 T; 20 other;
uucuugagcu ggaaagguga cauaaaauca uguccaagca cgcgauauua ugcacauuuu 60
cuaguccaag ac 72
//
ID cbr-mir-67 standard; RNA; CBR; 95 BP.
XX
AC MI0000510;
XX
DE Caenorhabditis briggsae miR-67 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 59..82
FT /accession="MIMAT0000480"
FT /product="cbr-miR-67"
FT /evidence=not_experimental
FT /similarity="MI0000038"
XX
SQ Sequence 95 BP; 28 A; 19 C; 16 G; 0 T; 32 other;
uagauauuuc gaucaacuca uucugcuggu uguuaugcug acaauugaug auuaagcauc 60
acaaccuccu agaaagagua gaccgauucu aucuu 95
//
ID cbr-mir-71 standard; RNA; CBR; 77 BP.
XX
AC MI0000511;
XX
DE Caenorhabditis briggsae miR-71 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..29
FT /accession="MIMAT0000481"
FT /product="cbr-miR-71"
FT /evidence=not_experimental
FT /similarity="MI0000042"
XX
SQ Sequence 77 BP; 18 A; 17 C; 21 G; 0 T; 21 other;
agcugaacga ugaaagacau ggguagugag acgucggagc cucgucguau cacuauucug 60
uuuuucgccg aucaguc 77
//
ID cbr-mir-73a standard; RNA; CBR; 94 BP.
XX
AC MI0000512;
XX
DE Caenorhabditis briggsae miR-73 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..78
FT /accession="MIMAT0000482"
FT /product="cbr-miR-73a"
FT /evidence=not_experimental
FT /similarity="MI0000044"
XX
SQ Sequence 94 BP; 23 A; 28 C; 22 G; 0 T; 21 other;
cggucccuca aacaaccgag cuuccccguc aagccacagc uaucucugac auugcuggca 60
agauguuggc aguucaguug uaugacggag acca 94
//
ID cbr-mir-74a standard; RNA; CBR; 81 BP.
XX
AC MI0000513;
XX
DE Caenorhabditis briggsae miR-74 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..75
FT /accession="MIMAT0000483"
FT /product="cbr-miR-74a"
FT /evidence=not_experimental
FT /similarity="MI0000045"
XX
SQ Sequence 81 BP; 17 A; 21 C; 17 G; 0 T; 26 other;
cgcacuuuug ggcuuccaua ucuuucccag cuccucucau uuacuaugga ugcuggcaag 60
aaauggcagu cuagaugugc a 81
//
ID cbr-mir-75 standard; RNA; CBR; 92 BP.
XX
AC MI0000514;
XX
DE Caenorhabditis briggsae miR-75 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..78
FT /accession="MIMAT0000484"
FT /product="cbr-miR-75"
FT /evidence=not_experimental
FT /similarity="MI0000046"
XX
SQ Sequence 92 BP; 26 A; 23 C; 20 G; 0 T; 23 other;
ugcgagaccg aauugcaguc gguugcaagc uucaauacag acaaugguuc uugauauuaa 60
agcuaccaac cgccuucaaa ucgugcaucg cg 92
//
ID cbr-mir-77-1 standard; RNA; CBR; 96 BP.
XX
AC MI0000515;
XX
DE Caenorhabditis briggsae miR-77-1 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae. The hairpin precursor sequence represented here matches
CC two positions on FPC contig 2260 in the C. briggsae genome sequence.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..82
FT /accession="MIMAT0000485"
FT /product="cbr-miR-77"
FT /evidence=not_experimental
FT /similarity="MI0000048"
XX
SQ Sequence 96 BP; 25 A; 22 C; 21 G; 0 T; 28 other;
gagcugugaa uuuggauagc ugugcucuga ggaaauaaca auagucacac cccaugucau 60
uucaucaggc cauagcuguc caaauuucuc gguucg 96
//
ID cbr-mir-79 standard; RNA; CBR; 93 BP.
XX
AC MI0000517;
XX
DE Caenorhabditis briggsae miR-79 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..78
FT /accession="MIMAT0000486"
FT /product="cbr-miR-79"
FT /evidence=not_experimental
FT /similarity="MI0000050"
XX
SQ Sequence 93 BP; 26 A; 20 C; 19 G; 0 T; 28 other;
agaacauucu ccgaucuuug gugauucagc uuaaaugaua gaauucagac gucuucauaa 60
agcuagguua ccaaagcucg gcguuccagu ucg 93
//
ID cbr-mir-80 standard; RNA; CBR; 100 BP.
XX
AC MI0000518;
XX
DE Caenorhabditis briggsae miR-80 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
RN [2]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1,2]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..83
FT /accession="MIMAT0000487"
FT /product="cbr-miR-80"
FT /evidence=not_experimental
FT /similarity="MI0000051"
XX
SQ Sequence 100 BP; 28 A; 22 C; 20 G; 0 T; 30 other;
uggacacucu uucgcucagc uuucgacaug auucuaaaca auacgcuguc gcaauguugu 60
ugagaucauu aguugaaagc cgaacgauuc gagauaucca 100
//
ID cbr-mir-81 standard; RNA; CBR; 90 BP.
XX
AC MI0000519;
XX
DE Caenorhabditis briggsae miR-81 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..78
FT /accession="MIMAT0000488"
FT /product="cbr-miR-81"
FT /evidence=not_experimental
FT /similarity="MI0000052"
XX
SQ Sequence 90 BP; 24 A; 18 C; 19 G; 0 T; 29 other;
cgugauuaac ggucgguuuu caccuugauc ugagagcaau aaccagaaug cuuaucugag 60
aucaucguga aagcuaguug uuacuucacu 90
//
ID cbr-mir-82 standard; RNA; CBR; 95 BP.
XX
AC MI0000520;
XX
DE Caenorhabditis briggsae miR-82 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 59..80
FT /accession="MIMAT0000489"
FT /product="cbr-miR-82"
FT /evidence=not_experimental
FT /similarity="MI0000053"
XX
SQ Sequence 95 BP; 27 A; 20 C; 23 G; 0 T; 25 other;
aaguucuucu agcgacaggu uuucgccgug aucugcagag uuccaugaag aaaacaucug 60
agaucaucgu gaaagccagu ugcuuaagag gacuc 95
//
ID cbr-mir-85 standard; RNA; CBR; 80 BP.
XX
AC MI0000521;
XX
DE Caenorhabditis briggsae miR-85 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..73
FT /accession="MIMAT0000490"
FT /product="cbr-miR-85"
FT /evidence=not_experimental
FT /similarity="MI0000056"
XX
SQ Sequence 80 BP; 20 A; 15 C; 22 G; 0 T; 23 other;
ccccggugcc cgcuuuuuca guaguuugaa accagagaug auaguugguu acaaaguauu 60
ugaaaaggcg ugcacugggu 80
//
ID cbr-mir-86 standard; RNA; CBR; 98 BP.
XX
AC MI0000522;
XX
DE Caenorhabditis briggsae miR-86 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000491"
FT /product="cbr-miR-86"
FT /evidence=not_experimental
FT /similarity="MI0000057"
XX
SQ Sequence 98 BP; 21 A; 25 C; 23 G; 0 T; 29 other;
cgagucaaug ccguuuaagu gaaugcuuug ccacagucuu cgaucauguc acaugaagcc 60
ugggcuuaga uucacuuagg ccggcguucc uugacuca 98
//
ID cbr-mir-87 standard; RNA; CBR; 95 BP.
XX
AC MI0000523;
XX
DE Caenorhabditis briggsae miR-87 stem-loop
XX
RN [1]
RX PUBMED; 11679672.
RA Lee RC, Ambros V;
RT "An extensive class of small RNAs in Caenorhabditis elegans";
RL Science. 294:862-864(2001).
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..80
FT /accession="MIMAT0000492"
FT /product="cbr-miR-87"
FT /evidence=not_experimental
FT /similarity="MI0000058"
XX
SQ Sequence 95 BP; 19 A; 29 C; 25 G; 0 T; 22 other;
gguugugccc acccggccgc cugauacuuu cgucucaacc ucgcugucag aaugucguag 60
gugagcaaag uuucaggugu gccggaacac accca 95
//
ID cbr-mir-90a standard; RNA; CBR; 97 BP.
XX
AC MI0000524;
XX
DE Caenorhabditis briggsae miR-90 stem-loop
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 58..79
FT /accession="MIMAT0000493"
FT /product="cbr-miR-90a"
FT /evidence=not_experimental
FT /similarity="MI0000059"
XX
SQ Sequence 97 BP; 26 A; 20 C; 19 G; 0 T; 32 other;
cgcacucauu ucaagcggcu uucaacgacu auaucaacca aaucaagcua gauacguuga 60
uauguuguuu gaaugccccu ugagauuuug gaguguu 97
//
ID cbr-mir-124a standard; RNA; CBR; 98 BP.
XX
AC MI0000525;
XX
DE Caenorhabditis briggsae miR-124 stem-loop
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..81
FT /accession="MIMAT0000494"
FT /product="cbr-miR-124a"
FT /evidence=not_experimental
FT /similarity="MI0000302"
XX
SQ Sequence 98 BP; 22 A; 22 C; 26 G; 0 T; 28 other;
uuuccagucg ucauauggcg uccaccugag ugacuuuagu ggacauguau aguuuccaac 60
uaaggcacgc ggugaaugcc acguggcaau ucugggau 98
//
ID cbr-mir-228 standard; RNA; CBR; 93 BP.
XX
AC MI0000526;
XX
DE Caenorhabditis briggsae miR-228 stem-loop
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0000495"
FT /product="cbr-miR-228"
FT /evidence=not_experimental
FT /similarity="MI0000303"
XX
SQ Sequence 93 BP; 24 A; 25 C; 26 G; 0 T; 18 other;
aucccacccu guucgcaaug gcacugcaug aauucacgga ugcaaagcga cagaccgcgg 60
aucaugcggu accauagcug acggugguga gau 93
//
ID cbr-mir-230 standard; RNA; CBR; 96 BP.
XX
AC MI0000527;
XX
DE Caenorhabditis briggsae miR-230 stem-loop
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 59..81
FT /accession="MIMAT0000496"
FT /product="cbr-miR-230"
FT /evidence=not_experimental
FT /similarity="MI0000305"
XX
SQ Sequence 96 BP; 30 A; 13 C; 21 G; 0 T; 32 other;
aaaaugccuu accgauacuu ggucgacaau uuaauaguau cugauuaauu gauggauagu 60
auuaguugug cgaccaggaa augguaugag cauuuc 96
//
ID cbr-mir-232-1 standard; RNA; CBR; 95 BP.
XX
AC MI0000528;
XX
DE Caenorhabditis briggsae miR-232-1 stem-loop
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae. The hairpin precursor sequence represented here matches
CC two positions on FPC contig 143 in the C. briggsae genome sequence.
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..79
FT /accession="MIMAT0000497"
FT /product="cbr-miR-232"
FT /evidence=not_experimental
FT /similarity="MI0000307"
XX
SQ Sequence 95 BP; 26 A; 17 C; 17 G; 0 T; 35 other;
auucaagauu ucggaucucc guaguuuuga ccauuuuauc caaccuaaua augugauaaa 60
ugcaucuuaa cugcggugau cuggauuuug ugaac 95
//
ID cbr-mir-233 standard; RNA; CBR; 97 BP.
XX
AC MI0000530;
XX
DE Caenorhabditis briggsae miR-233 stem-loop
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 60..82
FT /accession="MIMAT0000498"
FT /product="cbr-miR-233"
FT /evidence=not_experimental
FT /similarity="MI0000308"
XX
SQ Sequence 97 BP; 27 A; 21 C; 21 G; 0 T; 28 other;
aagcauuuuu cugucccgcg caucccuuug uuccaauauu caaaccagua gaaagauuau 60
ugagcaaugc gcaugugcgg gacagauuga auagcug 97
//
ID cbr-mir-234 standard; RNA; CBR; 96 BP.
XX
AC MI0000531;
XX
DE Caenorhabditis briggsae miR-234 stem-loop
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 59..79
FT /accession="MIMAT0000499"
FT /product="cbr-miR-234"
FT /evidence=not_experimental
FT /similarity="MI0000309"
XX
SQ Sequence 96 BP; 35 A; 17 C; 18 G; 0 T; 26 other;
gacucuagca aagaucaaac gguauuccug agugaauaau aaaaaugagu ccauucuauu 60
auugcucgag aauacccuuu gacaagcuga aaagug 96
//
ID cbr-mir-236 standard; RNA; CBR; 100 BP.
XX
AC MI0000532;
XX
DE Caenorhabditis briggsae miR-236 stem-loop
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..83
FT /accession="MIMAT0000500"
FT /product="cbr-miR-236"
FT /evidence=not_experimental
FT /similarity="MI0000311"
XX
SQ Sequence 100 BP; 28 A; 23 C; 19 G; 0 T; 30 other;
aagugaccaa uguccagcgu cuuaccuguu caauauuuag acugaccaaa cccauagcuc 60
uaauacuguc agguaaugac gcuggauagu cuugucauug 100
//
ID cbr-mir-241 standard; RNA; CBR; 90 BP.
XX
AC MI0000533;
XX
DE Caenorhabditis briggsae miR-241 stem-loop
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0000501"
FT /product="cbr-miR-241"
FT /evidence=not_experimental
FT /similarity="MI0000317"
XX
SQ Sequence 90 BP; 23 A; 17 C; 24 G; 0 T; 26 other;
acggugucaa agcugaggua ggugugagaa augacgaaag gcucuuaauc guuucauugu 60
cucgcagcug cuucaacugu gauuuaccga 90
//
ID cbr-mir-244 standard; RNA; CBR; 91 BP.
XX
AC MI0000534;
XX
DE Caenorhabditis briggsae miR-244 stem-loop
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..41
FT /accession="MIMAT0000502"
FT /product="cbr-miR-244"
FT /evidence=not_experimental
FT /similarity="MI0000320"
XX
SQ Sequence 91 BP; 22 A; 18 C; 18 G; 0 T; 33 other;
acccaaauuu cucgauuucu uugguuguac aaagugguau ggcucucuug cucauaccgc 60
uuuacagcua aaggaaucga uugauuuugg a 91
//
ID cbr-mir-245 standard; RNA; CBR; 85 BP.
XX
AC MI0000535;
XX
DE Caenorhabditis briggsae miR-245 stem-loop
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0000503"
FT /product="cbr-miR-245"
FT /evidence=not_experimental
FT /similarity="MI0000321"
XX
SQ Sequence 85 BP; 19 A; 20 C; 16 G; 0 T; 30 other;
ucaaugucga agagcugcuu gcaagguacc uaauuguuug acucuauucu caauuggucc 60
ccuccaagua gcucuauugc auugu 85
//
ID cbr-mir-248 standard; RNA; CBR; 104 BP.
XX
AC MI0000536;
XX
DE Caenorhabditis briggsae miR-248 stem-loop
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..83
FT /accession="MIMAT0000504"
FT /product="cbr-miR-248"
FT /evidence=not_experimental
FT /similarity="MI0000324"
XX
SQ Sequence 104 BP; 23 A; 23 C; 24 G; 0 T; 34 other;
ugcaaacuga uauucacgau aagcgcuauc cuuccguugu auucaagcuu gguugucgag 60
uacacgugcu cggauaacgc ucaucgaguc ugaucgguua uguu 104
//
ID cbr-mir-250 standard; RNA; CBR; 87 BP.
XX
AC MI0000537;
XX
DE Caenorhabditis briggsae miR-250 stem-loop
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..77
FT /accession="MIMAT0000505"
FT /product="cbr-miR-250"
FT /evidence=not_experimental
FT /similarity="MI0000326"
XX
SQ Sequence 87 BP; 18 A; 25 C; 21 G; 0 T; 23 other;
ucuucggacc acgccuucag uugccucgug auccgccgaa ucuguaaugg acgaaucaca 60
gucaacuguu ggcacggucc uugaagu 87
//
ID cbr-mir-251 standard; RNA; CBR; 92 BP.
XX
AC MI0000538;
XX
DE Caenorhabditis briggsae miR-251 stem-loop
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..40
FT /accession="MIMAT0000506"
FT /product="cbr-miR-251"
FT /evidence=not_experimental
FT /similarity="MI0000327"
XX
SQ Sequence 92 BP; 29 A; 15 C; 20 G; 0 T; 28 other;
cccaaaugac aucucguuaa guaguggugc cgcucuuauu agaauuauca aguaauaaga 60
guuguucgcu acuuaacgag aggaaauuug ga 92
//
ID cbr-mir-252 standard; RNA; CBR; 99 BP.
XX
AC MI0000539;
XX
DE Caenorhabditis briggsae miR-252 stem-loop
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0000507"
FT /product="cbr-miR-252"
FT /evidence=not_experimental
FT /similarity="MI0000328"
XX
SQ Sequence 99 BP; 23 A; 22 C; 23 G; 0 T; 31 other;
aggucucucc caguuauaag uaguagugcc gcagguaacc gcuuccagaa aauugguuua 60
ccuacugccu ucugcuuaga auugggauuu ugaugaccg 99
//
ID cbr-mir-259 standard; RNA; CBR; 95 BP.
XX
AC MI0000540;
XX
DE Caenorhabditis briggsae miR-259 stem-loop
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0000508"
FT /product="cbr-miR-259"
FT /evidence=not_experimental
FT /similarity="MI0000336"
XX
SQ Sequence 95 BP; 22 A; 17 C; 19 G; 0 T; 37 other;
agucaucgaa acgaguaaau cucauccuaa ucugguugca uuuucaauac uuuuugcuac 60
cgauuugguu ugggauuggc uugucuagua uugac 95
//
ID cbr-mir-268 standard; RNA; CBR; 79 BP.
XX
AC MI0000541;
XX
DE Caenorhabditis briggsae miR-268 stem-loop
XX
CC This miRNA sequence is predicted based on homology to a verified miRNA
CC from C. elegans [1]. The expression of this miRNA has not been verified
CC in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..31
FT /accession="MIMAT0000509"
FT /product="cbr-miR-268"
FT /evidence=not_experimental
FT /similarity="MI0000348"
XX
SQ Sequence 79 BP; 17 A; 18 C; 15 G; 0 T; 29 other;
ugaagcggca agaauuagaa gcaguuuugg ugucagacac acucacugac ucacugcuuc 60
uuguuuuucu ucuucuucu 79
//
ID hsa-mir-320a standard; RNA; HSA; 72 BP.
XX
AC MI0000542;
XX
DE Homo sapiens miR-320a stem-loop
XX
RN [1]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [5]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-320; hsa-miR-320.
DR HGNC; 31632; MIR320A.
DR ENTREZGENE; 407037; MIR320A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0037311"
FT /product="hsa-miR-320a-5p"
FT /evidence=not_experimental
FT miRNA 42..63
FT /accession="MIMAT0000510"
FT /product="hsa-miR-320a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5]"
XX
SQ Sequence 72 BP; 13 A; 21 C; 22 G; 0 T; 16 other;
cuccccuccg ccuucucuuc ccgguucuuc ccggagucgg gaaaagcugg guugagaggg 60
cgaaaaagga ug 72
//
ID ath-MIR319a standard; RNA; ATH; 176 BP.
XX
AC MI0000544;
XX
DE Arabidopsis thaliana miR319a stem-loop
XX
RN [1]
RX PUBMED; 12931144.
RA Palatnik JF, Allen E, Wu X, Schommer C, Schwab R, Carrington JC, Weigel D;
RT "Control of leaf morphogenesis by microRNAs";
RL Nature. 425:257-263(2003).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP1665; miR319.
XX
CC The A. thaliana jaw-D mutant has crinkly leaves and fruits, delayed
CC flowering time and greenish petals. The jaw-D phenotype is caused by the
CC over-expression of miR319 (also therefore known as miR-JAW), which is
CC produced from a ~500 base long primary transcript RNA [1]. The mir-JAW
CC microRNA is expressed in two forms, 20 and 21 nt, differing by the
CC presence of the 3' terminal U. Cloned microRNA sequence was obtained from
CC the jaw-D mutant. This miR has been shown targets TCP genes for cleavage
CC [1]. This sequence is located on BAC F9D16. miR-JAW has a homologue
CC located in BAC MBK23 (MIR:MI0000545). The mature excised miR shows
CC sequence similarity to miR159 (MIR:MI0000189, MIR:MI0000218).
XX
FH Key Location/Qualifiers
FH
FT miRNA 154..174
FT /accession="MIMAT0000511"
FT /product="ath-miR319a"
FT /evidence=experimental
FT /experiment="Northern [1], 5'RACE [2], cloned [2], 454
FT [3], Illumina [5]"
XX
SQ Sequence 176 BP; 52 A; 37 C; 36 G; 0 T; 51 other;
agagagagcu uccuugaguc cauucacagg ucgugauaug auucaauuag cuuccgacuc 60
auucauccaa auaccgaguc gccaaaauuc aaacuagacu cguuaaauga augaaugaug 120
cgguagacaa auuggaucau ugauucucuu ugauuggacu gaagggagcu cccucu 176
//
ID ath-MIR319b standard; RNA; ATH; 172 BP.
XX
AC MI0000545;
XX
DE Arabidopsis thaliana miR319b stem-loop
XX
RN [1]
RX PUBMED; 12931144.
RA Palatnik JF, Allen E, Wu X, Schommer C, Schwab R, Carrington JC, Weigel D;
RT "Control of leaf morphogenesis by microRNAs";
RL Nature. 425:257-263(2003).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
CC This sequence is a homologue of miR319a (MIR:MI0000544) -- also called
CC miR-JAW -- and is located on BAC MBK23.
XX
FH Key Location/Qualifiers
FH
FT miRNA 152..172
FT /accession="MIMAT0000512"
FT /product="ath-miR319b"
FT /evidence=experimental
FT /experiment="Northern [1], 5'RACE [2], cloned [2], 454
FT [3], Illumina [5]"
XX
SQ Sequence 172 BP; 52 A; 32 C; 35 G; 0 T; 53 other;
agagagcuuu cuucggucca cucauggagu aauaugugag auuuaauuga cucucgacuc 60
auucauccaa auaccaaaug aaagaauuug uucucauaug guaaaugaau gaaugaugcg 120
agagacaaau ugagucuuca cuucucuaug cuuggacuga agggagcucc cu 172
//
ID mmu-mir-19b-2 standard; RNA; MMU; 84 BP.
XX
AC MI0000546;
XX
DE Mus musculus miR-19b-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676868; Mir19b-2.
DR ENTREZGENE; 387195; Mir19b-2.
XX
CC Mouse miR-19b was cloned from mouse tissues by independent groups [1,2].
CC There are two predicted hairpin precursors, with closely related human
CC homologues [4]: mir-19b-1 (MIR:MI0000718) on chromosome 14, and mir-19b-2
CC (previously named mir-19b here, MIR:MI0000546) on mouse chromosome X.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..34
FT /accession="MIMAT0017010"
FT /product="mmu-miR-19b-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [7]"
FT miRNA 54..76
FT /accession="MIMAT0000513"
FT /product="mmu-miR-19b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3,5], Northern [2], Illumina [6-7]"
XX
SQ Sequence 84 BP; 24 A; 12 C; 20 G; 0 T; 28 other;
acuuacgauu aguuuugcag auuugcaguu cagcguauau gugaauauau ggcugugcaa 60
auccaugcaa aacugauugu ggga 84
//
ID mmu-mir-30c-1 standard; RNA; MMU; 89 BP.
XX
AC MI0000547;
XX
DE Mus musculus miR-30c-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676909; Mir30c-1.
DR ENTREZGENE; 387227; Mir30c-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0000514"
FT /product="mmu-miR-30c-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
FT miRNA 56..77
FT /accession="MIMAT0004616"
FT /product="mmu-miR-30c-1-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 89 BP; 18 A; 19 C; 25 G; 0 T; 27 other;
accauguugu agugugugua aacauccuac acucucagcu gugagcucaa gguggcuggg 60
agaggguugu uuacuccuuc ugccaugga 89
//
ID mmu-mir-30c-2 standard; RNA; MMU; 84 BP.
XX
AC MI0000548;
XX
DE Mus musculus miR-30c-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619048; Mir30c-2.
DR ENTREZGENE; 723964; Mir30c-2.
XX
CC miR-30c was cloned and mapped to chromosome 4 in reference [1]
CC (MIR:MI0000547). A search of more recent mouse genome assemblies suggests
CC the presence of a second locus encoding miR-30c on chromosome 1,
CC represented by this entry.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0000514"
FT /product="mmu-miR-30c-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
FT miRNA 54..75
FT /accession="MIMAT0005438"
FT /product="mmu-miR-30c-2-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 84 BP; 25 A; 17 C; 19 G; 0 T; 23 other;
gagugacaga uauuguaaac auccuacacu cucagcugug aaaaguaaga aagcugggag 60
aaggcuguuu acucucucug ccuu 84
//
ID mmu-mir-30d standard; RNA; MMU; 82 BP.
XX
AC MI0000549;
XX
DE Mus musculus miR-30d stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [8]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676910; Mir30d.
DR ENTREZGENE; 387228; Mir30d.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0000515"
FT /product="mmu-miR-30d-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Illumina [6,8]"
FT miRNA 52..73
FT /accession="MIMAT0017011"
FT /product="mmu-miR-30d-3p"
FT /evidence=experimental
FT /experiment="454 [7], Illumina [8]"
XX
SQ Sequence 82 BP; 19 A; 22 C; 19 G; 0 T; 22 other;
aagucugugu cuguaaacau ccccgacugg aagcuguaag ccacagccaa gcuuucaguc 60
agauguuugc ugcuacuggc uc 82
//
ID mmu-mir-148a standard; RNA; MMU; 99 BP.
XX
AC MI0000550;
XX
DE Mus musculus miR-148a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676833; Mir148a.
DR ENTREZGENE; 387166; Mir148a.
XX
CC This sequence was previsouly named mir-148 here and in [1], but is renamed
CC to avoid confusion with mir-148b (MIR:MI0000617). This sequence maps to
CC mouse chromosome 6.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0004617"
FT /product="mmu-miR-148a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 61..82
FT /accession="MIMAT0000516"
FT /product="mmu-miR-148a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0000253"
XX
SQ Sequence 99 BP; 25 A; 20 C; 25 G; 0 T; 29 other;
agccaguuug gucuuuugag acaaaguucu gagacacucc gacucugagu augauagaag 60
ucagugcacu acagaacuuu gucucuagag gcugugguc 99
//
ID mmu-mir-192 standard; RNA; MMU; 89 BP.
XX
AC MI0000551;
XX
DE Mus musculus miR-192 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676856; Mir192.
DR ENTREZGENE; 387187; Mir192.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0000517"
FT /product="mmu-miR-192-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 57..78
FT /accession="MIMAT0017012"
FT /product="mmu-miR-192-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 89 BP; 18 A; 27 C; 18 G; 0 T; 26 other;
cgugcacagg gcucugaccu augaauugac agccaguacu cuuuucucuc cucuggcugc 60
caauuccaua ggucacaggu auguucacc 89
//
ID mmu-mir-196a-1 standard; RNA; MMU; 102 BP.
XX
AC MI0000552;
XX
DE Mus musculus miR-196a-1 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 15105502.
RA Yekta S, Shih IH, Bartel DP;
RT "MicroRNA-directed cleavage of HOXB8 mRNA";
RL Science. 304:594-596(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676860; Mir196a-1.
DR ENTREZGENE; 387191; Mir196a-1.
XX
CC Yekta et al. report that miR-196 miRNAs are expressed from HOX gene
CC clusters in mammals, and that HOX genes in these clusters are targets of
CC miR-196. Indeed, HOXB8 mRNA was shown to be a natural target for
CC miR-196-directed cleavage through a perfectly complementary miR-target
CC site. Other HOX genes have imperfect miR-196 complementary sites
CC indicative of regulation by translational repression [2]. The mature
CC sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0000518"
FT /product="mmu-miR-196a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Illumina [4,6]"
FT miRNA 62..83
FT /accession="MIMAT0017013"
FT /product="mmu-miR-196a-1-3p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
XX
SQ Sequence 102 BP; 23 A; 22 C; 27 G; 0 T; 30 other;
ugagccggga cuguugagug aaguagguag uuucauguug uugggccugg cuuucugaac 60
acaacgacau caaaccaccu gauucauggc aguuacugcu uc 102
//
ID mmu-mir-196a-2 standard; RNA; MMU; 85 BP.
XX
AC MI0000553;
XX
DE Mus musculus miR-196a-2 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 15105502.
RA Yekta S, Shih IH, Bartel DP;
RT "MicroRNA-directed cleavage of HOXB8 mRNA";
RL Science. 304:594-596(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618739; Mir196a-2.
DR ENTREZGENE; 723958; Mir196a-2.
XX
CC Yekta et al. report that miR-196 miRNAs are expressed from HOX gene
CC clusters in mammals, and that HOX genes in these clusters are targets of
CC miR-196. Indeed, HOXB8 mRNA was shown to be a natural target for
CC miR-196-directed cleavage through a perfectly complementary miR-target
CC site. Other HOX genes have imperfect miR-196 complementary sites
CC indicative of regulation by translational repression [2]. The mature
CC sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000518"
FT /product="mmu-miR-196a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Illumina [4-5]"
FT miRNA 52..73
FT /accession="MIMAT0004618"
FT /product="mmu-miR-196a-2-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 85 BP; 20 A; 14 C; 23 G; 0 T; 28 other;
agcugaucug uggcuuaggu aguuucaugu uguugggauu gaguuuugaa cucggcaaca 60
agaaacugcc ugaguuacau caguc 85
//
ID mmu-mir-200a standard; RNA; MMU; 90 BP.
XX
AC MI0000554;
XX
DE Mus musculus miR-200a stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676874; Mir200a.
DR ENTREZGENE; 387242; Mir200a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0004619"
FT /product="mmu-miR-200a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 54..75
FT /accession="MIMAT0000519"
FT /product="mmu-miR-200a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 90 BP; 17 A; 23 C; 24 G; 0 T; 26 other;
cugggccucu gugggcaucu uaccggacag ugcuggauuu cuuggcuuga cucuaacacu 60
gucugguaac gauguucaaa ggugacccac 90
//
ID mmu-mir-208a standard; RNA; MMU; 83 BP.
XX
AC MI0000555;
XX
DE Mus musculus miR-208a stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676883; Mir208a.
DR ENTREZGENE; 387204; Mir208a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0017014"
FT /product="mmu-miR-208a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 50..71
FT /accession="MIMAT0000520"
FT /product="mmu-miR-208a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3]"
XX
SQ Sequence 83 BP; 20 A; 17 C; 24 G; 0 T; 22 other;
uuccuuugac gggugagcuu uuggcccggg uuauaccuga cacucacgua uaagacgagc 60
aaaaagcuug uuggucagag gag 83
//
ID mmu-let-7a-1 standard; RNA; MMU; 94 BP.
XX
AC MI0000556;
XX
DE Mus musculus let-7a-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676793; Mirlet7a-1.
DR ENTREZGENE; 387244; Mirlet7a-1.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0000521"
FT /product="mmu-let-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
FT miRNA 64..85
FT /accession="MIMAT0004620"
FT /product="mmu-let-7a-1-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 94 BP; 24 A; 17 C; 23 G; 0 T; 30 other;
uucacugugg gaugagguag uagguuguau aguuuuaggg ucacacccac cacugggaga 60
uaacuauaca aucuacuguc uuuccuaagg ugau 94
//
ID mmu-let-7a-2 standard; RNA; MMU; 96 BP.
XX
AC MI0000557;
XX
DE Mus musculus let-7a-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619049; Mirlet7a-2.
DR ENTREZGENE; 723965; Mirlet7a-2.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000521"
FT /product="mmu-let-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5,7]"
FT miRNA 62..82
FT /accession="MIMAT0017015"
FT /product="mmu-let-7a-2-3p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
XX
SQ Sequence 96 BP; 22 A; 19 C; 25 G; 0 T; 30 other;
cugcauguuc ccagguugag guaguagguu guauaguuua gaguuacauc aagggagaua 60
acuguacagc cuccuagcuu uccuugggac uugcac 96
//
ID mmu-let-7b standard; RNA; MMU; 85 BP.
XX
AC MI0000558;
XX
DE Mus musculus let-7b stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676794; Mirlet7b.
DR ENTREZGENE; 387245; Mirlet7b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000522"
FT /product="mmu-let-7b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
FT miRNA 61..82
FT /accession="MIMAT0004621"
FT /product="mmu-let-7b-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 85 BP; 18 A; 19 C; 25 G; 0 T; 23 other;
gcagggugag guaguagguu gugugguuuc agggcaguga uguugccccu ccgaagauaa 60
cuauacaacc uacugccuuc ccuga 85
//
ID mmu-let-7c-1 standard; RNA; MMU; 94 BP.
XX
AC MI0000559;
XX
DE Mus musculus let-7c-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676795; Mirlet7c-1.
DR ENTREZGENE; 387246; Mirlet7c-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000523"
FT /product="mmu-let-7c-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Northern [2], Illumina [6-7]"
FT miRNA 61..82
FT /accession="MIMAT0004622"
FT /product="mmu-let-7c-1-3p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
XX
SQ Sequence 94 BP; 19 A; 18 C; 26 G; 0 T; 31 other;
ugugugcauc cggguugagg uaguagguug uaugguuuag aguuacaccc ugggaguuaa 60
cuguacaacc uucuagcuuu ccuuggagca cacu 94
//
ID mmu-let-7c-2 standard; RNA; MMU; 95 BP.
XX
AC MI0000560;
XX
DE Mus musculus let-7c-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619050; Mirlet7c-2.
DR ENTREZGENE; 723966; Mirlet7c-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000523"
FT /product="mmu-let-7c-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Northern [2], Illumina [6-7]"
FT miRNA 62..83
FT /accession="MIMAT0005439"
FT /product="mmu-let-7c-2-3p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
XX
SQ Sequence 95 BP; 14 A; 22 C; 29 G; 0 T; 30 other;
acggccuuug gggugaggua guagguugua ugguuuuggg cucugccccg cucugcggua 60
acuauacaau cuacugucuu uccugaagug gccgc 95
//
ID mmu-let-7e standard; RNA; MMU; 93 BP.
XX
AC MI0000561;
XX
DE Mus musculus let-7e stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676797; Mirlet7e.
DR ENTREZGENE; 387248; Mirlet7e.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000524"
FT /product="mmu-let-7e-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5,7]"
FT miRNA 60..81
FT /accession="MIMAT0017016"
FT /product="mmu-let-7e-3p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
XX
SQ Sequence 93 BP; 18 A; 29 C; 29 G; 0 T; 17 other;
cgcgcccccc gggcugaggu aggagguugu auaguugagg aagacacccg aggagaucac 60
uauacggccu ccuagcuuuc cccaggcugc gcc 93
//
ID mmu-let-7f-1 standard; RNA; MMU; 89 BP.
XX
AC MI0000562;
XX
DE Mus musculus let-7f-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676798; Mirlet7f1.
DR ENTREZGENE; 387252; Mirlet7f-1.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0000525"
FT /product="mmu-let-7f-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
FT miRNA 64..85
FT /accession="MIMAT0004623"
FT /product="mmu-let-7f-1-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 89 BP; 23 A; 12 C; 23 G; 0 T; 31 other;
aucagaguga gguaguagau uguauaguug ugggguagug auuuuacccu guuuaggaga 60
uaacuauaca aucuauugcc uucccugag 89
//
ID mmu-let-7f-2 standard; RNA; MMU; 83 BP.
XX
AC MI0000563;
XX
DE Mus musculus let-7f-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676799; Mirlet7f2.
DR ENTREZGENE; 387253; Mirlet7f-2.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0000525"
FT /product="mmu-let-7f-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5,7]"
FT miRNA 58..78
FT /accession="MIMAT0017017"
FT /product="mmu-let-7f-2-3p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
XX
SQ Sequence 83 BP; 20 A; 15 C; 20 G; 0 T; 28 other;
ugugggauga gguaguagau uguauaguuu uagggucaua ccccaucuug gagauaacua 60
uacagucuac ugucuuuccc acg 83
//
ID mmu-mir-15a standard; RNA; MMU; 84 BP.
XX
AC MI0000564;
XX
DE Mus musculus miR-15a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676841; Mir15a.
DR ENTREZGENE; 387174; Mir15a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000526"
FT /product="mmu-miR-15a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Northern [2], Illumina [6-7]"
FT miRNA 52..73
FT /accession="MIMAT0004624"
FT /product="mmu-miR-15a-3p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
XX
SQ Sequence 84 BP; 26 A; 15 C; 23 G; 0 T; 20 other;
cccuuggagu aaaguagcag cacauaaugg uuuguggaug uugaaaaggu gcaggccaua 60
cugugcugcc ucaaaauaca agga 84
//
ID mmu-mir-16-1 standard; RNA; MMU; 93 BP.
XX
AC MI0000565;
XX
DE Mus musculus miR-16-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676843; Mir16-1.
DR ENTREZGENE; 387134; Mir16-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000527"
FT /product="mmu-miR-16-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4-5], Northern [2], Illumina [6]"
FT miRNA 58..79
FT /accession="MIMAT0004625"
FT /product="mmu-miR-16-1-3p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
XX
SQ Sequence 93 BP; 25 A; 17 C; 24 G; 0 T; 27 other;
augucagcgg ugccuuagca gcacguaaau auuggcguua agauucugaa auuaccucca 60
guauugacug ugcugcugaa guaagguugg caa 93
//
ID mmu-mir-16-2 standard; RNA; MMU; 95 BP.
XX
AC MI0000566;
XX
DE Mus musculus miR-16-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [8]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618690; Mir16-2.
DR ENTREZGENE; 723949; Mir16-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000527"
FT /product="mmu-miR-16-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4-5], Northern [2], Illumina
FT [6,8]"
FT miRNA 59..80
FT /accession="MIMAT0017018"
FT /product="mmu-miR-16-2-3p"
FT /evidence=experimental
FT /experiment="454 [7], Illumina [8]"
XX
SQ Sequence 95 BP; 30 A; 16 C; 19 G; 0 T; 30 other;
caugcuuguu ccacucuagc agcacguaaa uauuggcgua gugaaauaaa uauuaaacac 60
caauauuauu gugcugcuuu agugugacag ggaua 95
//
ID mmu-mir-18a standard; RNA; MMU; 96 BP.
XX
AC MI0000567;
XX
DE Mus musculus miR-18a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676844; Mirn18.
DR ENTREZGENE; 387135; Mir18.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0000528"
FT /product="mmu-miR-18a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 58..79
FT /accession="MIMAT0004626"
FT /product="mmu-miR-18a-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 96 BP; 22 A; 19 C; 23 G; 0 T; 32 other;
ugcgugcuuu uuguucuaag gugcaucuag ugcagauagu gaaguagacu agcaucuacu 60
gcccuaagug cuccuucugg cauaagaagu uauguc 96
//
ID mmu-mir-20a standard; RNA; MMU; 107 BP.
XX
AC MI0000568;
XX
DE Mus musculus miR-20a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676872; Mir20a.
DR ENTREZGENE; 387139; Mir20a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..49
FT /accession="MIMAT0000529"
FT /product="mmu-miR-20a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 63..84
FT /accession="MIMAT0004627"
FT /product="mmu-miR-20a-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 107 BP; 28 A; 22 C; 27 G; 0 T; 30 other;
gugugaugug acagcuucug uagcacuaaa gugcuuauag ugcagguagu guguagccau 60
cuacugcauu acgagcacuu aaaguacugc cagcuguaga acuccag 107
//
ID mmu-mir-21a standard; RNA; MMU; 92 BP.
XX
AC MI0000569;
XX
DE Mus musculus miR-21 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [5]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 17687032.
RA Sathyan P, Golden HB, Miranda RC;
RT "Competing interactions between micro-RNAs determine neural progenitor
RT survival and proliferation after ethanol exposure: evidence from an ex
RT vivo model of the fetal cerebral cortical neuroepithelium";
RL J Neurosci. 27:8546-8557(2007).
XX
RN [8]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [9]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676885; Mir21.
DR ENTREZGENE; 387140; Mir21.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0000530"
FT /product="mmu-miR-21a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4-6], Northern [2], Illumina [8]"
FT miRNA 56..77
FT /accession="MIMAT0004628"
FT /product="mmu-miR-21a-3p"
FT /evidence=experimental
FT /experiment="cloned [6], Illumina [8-9]"
XX
SQ Sequence 92 BP; 20 A; 19 C; 23 G; 0 T; 30 other;
uguaccaccu ugucggauag cuuaucagac ugauguugac uguugaaucu cauggcaaca 60
gcagucgaug ggcugucuga cauuuuggua uc 92
//
ID mmu-mir-22 standard; RNA; MMU; 95 BP.
XX
AC MI0000570;
XX
DE Mus musculus miR-22 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676896; Mir22.
DR ENTREZGENE; 387141; Mir22.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0004629"
FT /product="mmu-miR-22-5p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
FT miRNA 57..78
FT /accession="MIMAT0000531"
FT /product="mmu-miR-22-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4-5], Northern [2], Illumina [6]"
XX
SQ Sequence 95 BP; 18 A; 29 C; 24 G; 0 T; 24 other;
accuggcuga gccgcaguag uucuucagug gcaagcuuua uguccugacc cagcuaaagc 60
ugccaguuga agaacuguug cccucugccc cuggc 95
//
ID mmu-mir-23a standard; RNA; MMU; 75 BP.
XX
AC MI0000571;
XX
DE Mus musculus miR-23a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676897; Mir23a.
DR ENTREZGENE; 387216; Mir23a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0017019"
FT /product="mmu-miR-23a-5p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
FT miRNA 46..66
FT /accession="MIMAT0000532"
FT /product="mmu-miR-23a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4,6]"
XX
SQ Sequence 75 BP; 16 A; 19 C; 23 G; 0 T; 17 other;
cggacggcug ggguuccugg ggaugggauu ugaugccagu cacaaaucac auugccaggg 60
auuuccaacu gaccc 75
//
ID mmu-mir-24-2 standard; RNA; MMU; 107 BP.
XX
AC MI0000572;
XX
DE Mus musculus miR-24-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [5]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [8]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618755; Mir24-2.
DR ENTREZGENE; 723960; Mir24-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0005440"
FT /product="mmu-miR-24-2-5p"
FT /evidence=experimental
FT /experiment="cloned [6], Illumina [7-8]"
FT miRNA 61..82
FT /accession="MIMAT0000219"
FT /product="mmu-miR-24-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4-6], Northern [2], Illumina [7]"
XX
SQ Sequence 107 BP; 20 A; 37 C; 29 G; 0 T; 21 other;
gccucucucc gggcuccgcc ucccgugccu acugagcuga aacaguugau uccagugcac 60
uggcucaguu cagcaggaac aggaguccag cccccuagga gcuggca 107
//
ID mmu-mir-26a-1 standard; RNA; MMU; 90 BP.
XX
AC MI0000573;
XX
DE Mus musculus miR-26a-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676900; Mir26a-1.
DR ENTREZGENE; 387218; Mir26a-1.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000533"
FT /product="mmu-miR-26a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
FT miRNA 55..76
FT /accession="MIMAT0017020"
FT /product="mmu-miR-26a-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
XX
SQ Sequence 90 BP; 16 A; 23 C; 31 G; 0 T; 20 other;
aaggccgugg ccucguucaa guaauccagg auaggcugug caggucccaa ggggccuauu 60
cuugguuacu ugcacgggga cgcgggccug 90
//
ID mmu-mir-26b standard; RNA; MMU; 85 BP.
XX
AC MI0000575;
XX
DE Mus musculus miR-26b stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [5]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [8]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676901; Mir26b.
DR ENTREZGENE; 387219; Mir26b.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [6].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0000534"
FT /product="mmu-miR-26b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4-6], Northern [2], Illumina [7]"
FT miRNA 51..72
FT /accession="MIMAT0004630"
FT /product="mmu-miR-26b-3p"
FT /evidence=experimental
FT /experiment="cloned [6], Illumina [7-8]"
XX
SQ Sequence 85 BP; 13 A; 23 C; 27 G; 0 T; 22 other;
ugcccgggac ccaguucaag uaauucagga uagguugugg ugcugaccag ccuguucucc 60
auuacuuggc ucgggggccg gugcc 85
//
ID mmu-mir-29a standard; RNA; MMU; 88 BP.
XX
AC MI0000576;
XX
DE Mus musculus miR-29a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676904; Mir29a.
DR ENTREZGENE; 387222; Mir29a.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [5].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0004631"
FT /product="mmu-miR-29a-5p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
FT miRNA 54..75
FT /accession="MIMAT0000535"
FT /product="mmu-miR-29a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], Northern [2], Illumina [6-7]"
XX
SQ Sequence 88 BP; 24 A; 14 C; 20 G; 0 T; 30 other;
accccuuaga ggaugacuga uuucuuuugg uguucagagu caauagaauu uucuagcacc 60
aucugaaauc gguuauaaug auugggga 88
//
ID mmu-mir-29c standard; RNA; MMU; 88 BP.
XX
AC MI0000577;
XX
DE Mus musculus miR-29c stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676906; Mir29c.
DR ENTREZGENE; 387224; Mir29c.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0004632"
FT /product="mmu-miR-29c-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT miRNA 54..75
FT /accession="MIMAT0000536"
FT /product="mmu-miR-29c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
XX
SQ Sequence 88 BP; 18 A; 17 C; 22 G; 0 T; 31 other;
aucucuuaca caggcugacc gauuucuccu gguguucaga gucuguuuuu gucuagcacc 60
auuugaaauc gguuaugaug uaggggga 88
//
ID mmu-mir-27a standard; RNA; MMU; 87 BP.
XX
AC MI0000578;
XX
DE Mus musculus miR-27a stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676902; Mir27a.
DR ENTREZGENE; 387220; Mir27a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0004633"
FT /product="mmu-miR-27a-5p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
FT miRNA 56..76
FT /accession="MIMAT0000537"
FT /product="mmu-miR-27a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4-5], Northern [1], Illumina [6]"
XX
SQ Sequence 87 BP; 17 A; 25 C; 27 G; 0 T; 18 other;
uggccugagg agcagggcuu agcugcuugu gagcaagguc cacagcaaag ucguguucac 60
aguggcuaag uuccgccccc uggaccc 87
//
ID mmu-mir-31 standard; RNA; MMU; 106 BP.
XX
AC MI0000579;
XX
DE Mus musculus miR-31 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619330; Mir31.
DR ENTREZGENE; 723895; Mir31.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..49
FT /accession="MIMAT0000538"
FT /product="mmu-miR-31-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 64..86
FT /accession="MIMAT0004634"
FT /product="mmu-miR-31-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 106 BP; 26 A; 26 C; 27 G; 0 T; 27 other;
ugcuccugua acucggaacu ggagaggagg caagaugcug gcauagcugu ugaacugaga 60
accugcuaug ccaacauauu gccaucuuuc cugucugaca gcagcu 106
//
ID mmu-mir-92a-2 standard; RNA; MMU; 91 BP.
XX
AC MI0000580;
XX
DE Mus musculus miR-92a-2 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619438; Mirn92-2.
DR ENTREZGENE; 723942; Mir92-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0004635"
FT /product="mmu-miR-92a-2-5p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
FT miRNA 55..75
FT /accession="MIMAT0000539"
FT /product="mmu-miR-92a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], Illumina [5-6]"
XX
SQ Sequence 91 BP; 22 A; 16 C; 27 G; 0 T; 26 other;
ugcccauuca uccacaggug gggauuggug gcauuacuug uguuagauau aaaguauugc 60
acuugucccg gccugaggaa gaaagagggu u 91
//
ID mmu-mir-93 standard; RNA; MMU; 88 BP.
XX
AC MI0000581;
XX
DE Mus musculus miR-93 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619439; Mir93.
DR ENTREZGENE; 723885; Mir93.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0000540"
FT /product="mmu-miR-93-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], Illumina [4-5]"
FT miRNA 54..75
FT /accession="MIMAT0004636"
FT /product="mmu-miR-93-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 88 BP; 19 A; 25 C; 24 G; 0 T; 20 other;
agucaugggg gcuccaaagu gcuguucgug cagguagugu aauuaccuga ccuacugcug 60
agcuagcacu ucccgagccc ccaggaca 88
//
ID mmu-mir-96 standard; RNA; MMU; 106 BP.
XX
AC MI0000583;
XX
DE Mus musculus miR-96 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619440; Mir96.
DR ENTREZGENE; 723886; Mir96.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0000541"
FT /product="mmu-miR-96-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], Illumina [4,6]"
FT miRNA 66..87
FT /accession="MIMAT0017021"
FT /product="mmu-miR-96-3p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
XX
SQ Sequence 106 BP; 20 A; 26 C; 28 G; 0 T; 32 other;
ccaguaccau cugcuuggcc gauuuuggca cuagcacauu uuugcuugug ucucuccgcu 60
gugagcaauc auguguagug ccaauauggg aaaagcgggc ugcugc 106
//
ID mmu-mir-34a standard; RNA; MMU; 102 BP.
XX
AC MI0000584;
XX
DE Mus musculus miR-34a stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
RC Erratum RNA 9:631-632(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619363; Mir34a.
DR ENTREZGENE; 723848; Mir34a.
XX
CC Houbaviy et al. cloned this miRNA from embryonic stem cells and named it
CC miR-172 [1]. This sequence is homologous to human miR-34a
CC (MIR:MI0000268), and so is renamed miR-34a here. This sequence is not
CC related to miR172 from plants (MIR:MI0000215 and MIR:MI0000216). The
CC mature sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0000542"
FT /product="mmu-miR-34a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Illumina [4,6]"
FT miRNA 64..84
FT /accession="MIMAT0017022"
FT /product="mmu-miR-34a-3p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
XX
SQ Sequence 102 BP; 25 A; 18 C; 27 G; 0 T; 32 other;
ccagcuguga guaauucuuu ggcagugucu uagcugguug uugugaguau uagcuaagga 60
agcaaucagc aaguauacug cccuagaagu gcugcacauu gu 102
//
ID mmu-mir-129-2 standard; RNA; MMU; 90 BP.
XX
AC MI0000585;
XX
DE Mus musculus miR-129-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618711; Mir129-2.
DR ENTREZGENE; 723953; Mir129-2.
XX
CC The miRNA from the 5' arm of this precursor was verified by cloning in
CC mouse [1]. Reference [2] named the human/mouse conserved sequence
CC miR-129b, but subsequent genome searches suggest that the same mature
CC sequence may be expressed from two predicted hairpin precursors in both
CC mouse (this entry and MIR:MI0000222) and human (MIR:MI0000252 and
CC MIR:MI0000473). Poy et al. independently cloned a mature miRNA from the
CC 3' arm of the precursor, called mmu-miR-129-3p [3]. This sequence is not
CC perfectly conserved in the other predicted mouse miR-129 precursor
CC (MIR:MI0000222). The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0000209"
FT /product="mmu-miR-129-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], Illumina [5-6]"
FT miRNA 57..78
FT /accession="MIMAT0000544"
FT /product="mmu-miR-129-2-3p"
FT /evidence=experimental
FT /experiment="cloned [3-4], Illumina [5-6]"
XX
SQ Sequence 90 BP; 19 A; 25 C; 23 G; 0 T; 23 other;
ugccuuucgc gaaucuuuuu gcggucuggg cuugcuguac auaacucaau agccggaagc 60
ccuuacccca aaaagcauuc gcggagggcg 90
//
ID mmu-mir-98 standard; RNA; MMU; 108 BP.
XX
AC MI0000586;
XX
DE Mus musculus miR-98 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619441; Mir98.
DR ENTREZGENE; 723947; Mir98.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000545"
FT /product="mmu-miR-98-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2,4]"
FT /similarity="MI0000100"
FT miRNA 74..95
FT /accession="MIMAT0017023"
FT /product="mmu-miR-98-3p"
FT /evidence=experimental
FT /experiment="454 [3], Illumina [4]"
XX
SQ Sequence 108 BP; 25 A; 16 C; 32 G; 0 T; 35 other;
cugcacaugc uggggugagg uaguaaguug uauuguugug ggguagggau uuuaggcccc 60
aguaagaaga uaacuauaca acuuacuacu uuccuuggug uguggcau 108
//
ID mmu-mir-103-1 standard; RNA; MMU; 86 BP.
XX
AC MI0000587;
XX
DE Mus musculus miR-103-1 stem-loop
XX
RN [1]
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619058; Mir103-1.
DR ENTREZGENE; 723824; Mir103-1.
XX
CC This miRNA sequence was predicted based on homology to a verified miRNA
CC from human [1], and subsequently verified by cloning [2-4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0017024"
FT /product="mmu-miR-103-1-5p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
FT miRNA 52..74
FT /accession="MIMAT0000546"
FT /product="mmu-miR-103-3p"
FT /evidence=experimental
FT /experiment="cloned [2-4], Illumina [5,7]"
XX
SQ Sequence 86 BP; 18 A; 20 C; 21 G; 0 T; 27 other;
uucuuacugc ccucggcuuc uuuacagugc ugccuuguug cauauggauc aagcagcauu 60
guacagggcu augaaggcau ugagac 86
//
ID mmu-mir-103-2 standard; RNA; MMU; 86 BP.
XX
AC MI0000588;
XX
DE Mus musculus miR-103-2 stem-loop
XX
RN [1]
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619059; Mir103-2.
DR ENTREZGENE; 723825; Mir103-2.
XX
CC This miRNA sequence was predicted based on homology to a verified miRNA
CC from human [1], and subsequently verified by cloning [2,3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0017025"
FT /product="mmu-miR-103-2-5p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
FT miRNA 52..74
FT /accession="MIMAT0000546"
FT /product="mmu-miR-103-3p"
FT /evidence=experimental
FT /experiment="cloned [2-4], Illumina [5,7]"
XX
SQ Sequence 86 BP; 22 A; 19 C; 20 G; 0 T; 25 other;
gucuucgugc uuucagcuuc uuuacagugc ugccuuguag cauucagguc aagcagcauu 60
guacagggcu augaaagaac caagaa 86
//
ID rno-mir-322-1 standard; RNA; RNO; 95 BP.
XX
AC MI0000589;
XX
DE Rattus norvegicus miR-322-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314144; Mir322.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC The miR-322 locus has an orthologous sequence in human (MIR:MI0001446),
CC which expresses an experimentally validated mature miRNA sequence from its
CC 5' arm, named miR-424. The human mir-424 locus does not appear to contain
CC a homolog of the miR-322 sequence. The mouse ortholog (MIR:MI0000590)
CC appears able to express both miR-322 and miR-424. Both miR-322 and
CC miR-424 have been experimentally verified in rat. Landgraf et al. show
CC that the 5' product is the predominant one [3]. The 5' product is
CC therefore renamed miR-322 and the 3' product renamed miR-322*.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0001619"
FT /product="rno-miR-322-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], SOLiD [4]"
FT /similarity="MI0001446"
FT miRNA 61..80
FT /accession="MIMAT0000547"
FT /product="rno-miR-322-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [4]"
XX
SQ Sequence 95 BP; 26 A; 24 C; 24 G; 0 T; 21 other;
ccucgcugac uccgaaggga ugcagcagca auucauguuu uggaguauug ccaagguuca 60
aaacaugaag cgcugcaaca ccccuucgug ggaaa 95
//
ID mmu-mir-322 standard; RNA; MMU; 95 BP.
XX
AC MI0000590;
XX
DE Mus musculus miR-322 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619333; Mir322.
DR ENTREZGENE; 723907; Mir322.
XX
CC The mir-322 locus appears able to express two mature miRNA sequences. Poy
CC et al. cloned a sequence originating from the 5' arm from mouse pancreatic
CC beta cells [2]. This sequence is orthologous to the experimentally
CC validated miR-424 sequence from human (MIR:MI0001446), but was named
CC miR-322-5p in [2]. The mature product from the 3' arm of this precursor
CC sequence is the predicted mouse homologue of miR-322, experimentally
CC verified in rat (MIR:MI0000589) [1], and later in mouse [3]. The
CC orthologous human locus does not appear to contain the miR-322 sequence.
CC Landgraf et al. confirm that the 5' product is the predominant one [4].
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0000548"
FT /product="mmu-miR-322-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [5-6]"
FT miRNA 61..81
FT /accession="MIMAT0000549"
FT /product="mmu-miR-322-3p"
FT /evidence=experimental
FT /experiment="cloned [3-4], Illumina [5-6]"
FT /similarity="MI0000589"
XX
SQ Sequence 95 BP; 24 A; 24 C; 25 G; 0 T; 22 other;
ccucguugac uccgaagggc ugcagcagca auucauguuu uggaguauug ccaagguuca 60
aaacaugaag cgcugcaaca ccccuucgug gggaa 95
//
ID rno-mir-323 standard; RNA; RNO; 86 BP.
XX
AC MI0000591;
XX
DE Rattus norvegicus miR-323 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313969; Mir323.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0004637"
FT /product="rno-miR-323-5p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
FT miRNA 51..71
FT /accession="MIMAT0000550"
FT /product="rno-miR-323-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], SOLiD [4]"
XX
SQ Sequence 86 BP; 14 A; 20 C; 25 G; 0 T; 27 other;
uugguacuug gagagaggug guccguggcg cguucgcuuc auuuauggcg cacauuacac 60
ggucgaccuc uuugcgguau cuaauc 86
//
ID mmu-mir-323 standard; RNA; MMU; 86 BP.
XX
AC MI0000592;
XX
DE Mus musculus miR-323 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619334; Mir323.
DR ENTREZGENE; 723839; Mir323.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This mouse miRNA is predicted based on homology to the verified rat
CC sequence (MIR:MI0000591). Seitz et al. independently predicted the miRNA
CC hairpin precursor sequence by conservation between mouse and human [2].
CC Landgraf et al. later cloned and sequenced mature products from both arms
CC of the predicted hairpin [3]. The mature sequence shown here represents
CC the most commonly cloned form from large-scale cloning studies [3]. The
CC 5' end of the miRNA may be offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0004638"
FT /product="mmu-miR-323-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT miRNA 51..71
FT /accession="MIMAT0000551"
FT /product="mmu-miR-323-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0000591"
XX
SQ Sequence 86 BP; 14 A; 20 C; 25 G; 0 T; 27 other;
uugguacuug gagagaggug guccguggcg cguucgcuuc auuuauggcg cacauuacac 60
ggucgaccuc uuugcgguau cuaauc 86
//
ID rno-mir-301a standard; RNA; RNO; 100 BP.
XX
AC MI0000593;
XX
DE Rattus norvegicus miR-301a stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314217; Mir301a.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This rat miRNA has an independently verified homologue in mouse
CC (MIR:MI0000401). The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [3]. The ends of
CC the miRNA may be offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0017026"
FT /product="rno-miR-301a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
FT miRNA 61..83
FT /accession="MIMAT0000552"
FT /product="rno-miR-301a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
XX
SQ Sequence 100 BP; 23 A; 26 C; 24 G; 0 T; 27 other;
ccugcuggcu acugcugacg acugcucuga cuuuauugca cuacuguacu guacagcuag 60
cagugcaaua guauugucaa agcauccggg agcaggcuac 100
//
ID rno-mir-324 standard; RNA; RNO; 83 BP.
XX
AC MI0000594;
XX
DE Rattus norvegicus miR-324 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314181; Mir324.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000553"
FT /product="rno-miR-324-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4], Northern [1], SOLiD [5]"
FT miRNA 51..72
FT /accession="MIMAT0000554"
FT /product="rno-miR-324-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1,3], SOLiD [5]"
XX
SQ Sequence 83 BP; 13 A; 25 C; 25 G; 0 T; 20 other;
cugacuaugc cuccucgcau ccccuagggc auugguguaa agcuggagac ccacugcccc 60
aggugcugcu ggggguugua guc 83
//
ID mmu-mir-324 standard; RNA; MMU; 89 BP.
XX
AC MI0000595;
XX
DE Mus musculus miR-324 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619335; Mir324.
DR ENTREZGENE; 723896; Mir324.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This mouse miRNA is predicted based on homology to the verified rat
CC sequence (MIR:MI0000594) - expression of miRNAs from both arms was later
CC independently verified in mouse [2]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [3]. The predominant miR-324-3p clone has a 3' terminal U residue, which
CC is incompatible with the genome sequence [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..40
FT /accession="MIMAT0000555"
FT /product="mmu-miR-324-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [4-5]"
FT /similarity="MI0000594"
FT miRNA 53..72
FT /accession="MIMAT0000556"
FT /product="mmu-miR-324-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [4-5]"
FT /similarity="MI0000594"
XX
SQ Sequence 89 BP; 16 A; 26 C; 26 G; 0 T; 21 other;
aacugacuau gccuccucgc auccccuagg gcauuggugu aaagcuggag acccacugcc 60
ccaggugcug cuggggguug uagucugac 89
//
ID rno-mir-325 standard; RNA; RNO; 98 BP.
XX
AC MI0000596;
XX
DE Rattus norvegicus miR-325 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313970; Mir325.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000557"
FT /product="rno-miR-325-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [4]"
FT miRNA 54..75
FT /accession="MIMAT0004639"
FT /product="rno-miR-325-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
XX
SQ Sequence 98 BP; 22 A; 19 C; 23 G; 0 T; 34 other;
auauagugcu ugguuccuag uaggugcuca guaaguguuu gugacauaau ucguuuauug 60
agcaccuccu aucaaucaag cacugugcua ggcucugg 98
//
ID mmu-mir-325 standard; RNA; MMU; 98 BP.
XX
AC MI0000597;
XX
DE Mus musculus miR-325 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619336; Mir325.
DR ENTREZGENE; 723929; Mir325.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000558"
FT /product="mmu-miR-325-5p"
FT /evidence=experimental
FT /experiment="Illumina [3-4]"
FT /similarity="MI0000596"
FT miRNA 54..75
FT /accession="MIMAT0004640"
FT /product="mmu-miR-325-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 98 BP; 22 A; 19 C; 23 G; 0 T; 34 other;
auauagugcu ugguuccuag uaggugcuca guaaguguuu gugacauaau ucguuuauug 60
agcaccuccu aucaaucaag cacugugcua ggcucugg 98
//
ID mmu-mir-326 standard; RNA; MMU; 95 BP.
XX
AC MI0000598;
XX
DE Mus musculus miR-326 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619338; Mir326.
DR ENTREZGENE; 723840; Mir326.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..43
FT /accession="MIMAT0017027"
FT /product="mmu-miR-326-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 60..80
FT /accession="MIMAT0000559"
FT /product="mmu-miR-326-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT /similarity="MI0000599"
XX
SQ Sequence 95 BP; 12 A; 26 C; 31 G; 0 T; 26 other;
cucaucuguc uguugggcug ggggcagggc cuuugugaag gcggguuaug cucagaucgc 60
cucugggccc uuccuccagu cccgaggcag auuua 95
//
ID rno-mir-326 standard; RNA; RNO; 95 BP.
XX
AC MI0000599;
XX
DE Rattus norvegicus miR-326 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313971; Mir326.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..39
FT /accession="MIMAT0017028"
FT /product="rno-miR-326-5p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
FT miRNA 60..80
FT /accession="MIMAT0000560"
FT /product="rno-miR-326-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], SOLiD [3]"
XX
SQ Sequence 95 BP; 12 A; 26 C; 32 G; 0 T; 25 other;
cucaucuguc uguggggcug ggggcagggc cuuugugaag gcggguuaug cucagaucgc 60
cucugggccc uuccuccagu cccgaggcag auuua 95
//
ID rno-mir-327 standard; RNA; RNO; 94 BP.
XX
AC MI0000600;
XX
DE Rattus norvegicus miR-327 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
DR ENTREZGENE; 100314145; Mir327.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..34
FT /accession="MIMAT0000561"
FT /product="rno-miR-327"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 94 BP; 16 A; 20 C; 31 G; 0 T; 27 other;
gucugaugcc cucauccuug aggggcauga ggguagucag uagccugaug ucccucuuga 60
uggcacuucg gacauguugg aauggcuugu gagg 94
//
ID rno-let-7d standard; RNA; RNO; 98 BP.
XX
AC MI0000601;
XX
DE Rattus norvegicus let-7d stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313972; Mirlet7d.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons,
CC including the sequence identical to the miRNA cloned from the reverse
CC strand of mouse let-7d (MIR:MI0000405), named let-7* [1]. The predicted
CC precursor sequence from a newer assembly of the rat genome also contains
CC the let-7d sequence in the 5' arm. The let-7d* sequence published in [1]
CC had an extra 3' A residue, which conflicts with the sequence of the
CC precursor shown here. The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [4]. The ends of
CC the miRNA may be offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000562"
FT /product="rno-let-7d-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT miRNA 68..89
FT /accession="MIMAT0000563"
FT /product="rno-let-7d-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4], Northern [1], SOLiD [5]"
XX
SQ Sequence 98 BP; 22 A; 19 C; 28 G; 0 T; 29 other;
ugggcuccua ggaagaggua guagguugca uaguuuuagg gcagagauuu ugcccacaag 60
gaguuaacua uacgaccugc ugccuuucuu agggccuu 98
//
ID rno-mir-328a standard; RNA; RNO; 84 BP.
XX
AC MI0000602;
XX
DE Rattus norvegicus miR-328a stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314218; Mir328.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..26
FT /accession="MIMAT0017029"
FT /product="rno-miR-328a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
FT miRNA 48..69
FT /accession="MIMAT0000564"
FT /product="rno-miR-328a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], SOLiD [3]"
XX
SQ Sequence 84 BP; 14 A; 29 C; 27 G; 0 T; 14 other;
uggggcaggg gggcaggagg ggcucaggga gaaagcaucu acagccccug gcccucucug 60
cccuuccguc cccugucccc aaau 84
//
ID mmu-mir-328 standard; RNA; MMU; 97 BP.
XX
AC MI0000603;
XX
DE Mus musculus miR-328 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619340; Mir328.
DR ENTREZGENE; 723841; Mir328.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This mouse miRNA is predicted based on homology to the verified rat
CC sequence (MIR:MI0000602) - its expression was later independently verified
CC in mouse [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0017030"
FT /product="mmu-miR-328-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 61..82
FT /accession="MIMAT0000565"
FT /product="mmu-miR-328-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [4-5]"
FT /similarity="MI0000602"
XX
SQ Sequence 97 BP; 14 A; 33 C; 32 G; 0 T; 18 other;
cugucucgga gccuggggca ggggggcagg aggggcucag ggagaaagua ucuacagccc 60
cuggcccucu cugcccuucc guccccuguc cccaagu 97
//
ID rno-mir-329 standard; RNA; RNO; 97 BP.
XX
AC MI0000604;
XX
DE Rattus norvegicus miR-329 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313973; Mir329.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This rat miRNA has a predicted homologue in mouse (MIR:MI0000605).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..46
FT /accession="MIMAT0017031"
FT /product="rno-miR-329-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 61..82
FT /accession="MIMAT0000566"
FT /product="rno-miR-329-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], SOLiD [2]"
XX
SQ Sequence 97 BP; 22 A; 21 C; 20 G; 0 T; 34 other;
uguucgcuuc ugguaccgga agagagguuu ucugggucuc uguuucuuug augagaauga 60
aacacaccca gcuaaccuuu uuuucaguau caaaucc 97
//
ID mmu-mir-329 standard; RNA; MMU; 97 BP.
XX
AC MI0000605;
XX
DE Mus musculus miR-329 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619341; Mir329.
DR ENTREZGENE; 723842; Mir329.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This mouse miRNA is predicted based on homology to the verified rat
CC sequence (MIR:MI0000604). Seitz et al. independently predicted the miRNA
CC hairpin precursor sequence by conservation between mouse and human [2].
CC Landgraf et al. verified expression by cloining [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0017032"
FT /product="mmu-miR-329-5p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
FT miRNA 61..82
FT /accession="MIMAT0000567"
FT /product="mmu-miR-329-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4,6]"
FT /similarity="MI0000604"
XX
SQ Sequence 97 BP; 22 A; 21 C; 20 G; 0 T; 34 other;
uguucgcuuc ugguaccgga agagagguuu ucugggucuc uguuucuuug augagaauga 60
aacacaccca gcuaaccuuu uuuucaguau caaaucc 97
//
ID rno-mir-330 standard; RNA; RNO; 97 BP.
XX
AC MI0000606;
XX
DE Rattus norvegicus miR-330 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313974; Mir330.
XX
CC The mature miRNA originating from the 3' arm reported in [1] contains an
CC extra 3' A residue, which conflicts with the precursor sequence shown
CC here. Landgraf et al. show that the 5' miRNA is the predominant one [2].
CC The 3' mature sequence is renamed miR-300* here.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0004641"
FT /product="rno-miR-330-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT miRNA 60..82
FT /accession="MIMAT0000568"
FT /product="rno-miR-330-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [3]"
XX
SQ Sequence 97 BP; 18 A; 29 C; 26 G; 0 T; 24 other;
acccuuuggc gaucucugcc ucucugggcc ugugucuuag gcucuucaag aucuaacgag 60
caaagcacag ggccugcaga gagguagcgc ucugcuc 97
//
ID mmu-mir-330 standard; RNA; MMU; 98 BP.
XX
AC MI0000607;
XX
DE Mus musculus miR-330 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619345; Mir330.
DR ENTREZGENE; 724063; Mir330.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0004642"
FT /product="mmu-miR-330-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [2-3]"
FT miRNA 61..83
FT /accession="MIMAT0000569"
FT /product="mmu-miR-330-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [2-3]"
FT /similarity="MI0000606"
XX
SQ Sequence 98 BP; 18 A; 30 C; 27 G; 0 T; 23 other;
gacccuuugg cgaucucugc cucucugggc cugugucuua ggcucuucaa gauccaacga 60
gcaaagcaca gggccugcag agagguagcg cucugcuc 98
//
ID rno-mir-331 standard; RNA; RNO; 96 BP.
XX
AC MI0000608;
XX
DE Rattus norvegicus miR-331 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313975; Mir331.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This rat miRNA has a predicted homologue in mouse (MIR:MI0000609).
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..25
FT /accession="MIMAT0017033"
FT /product="rno-miR-331-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 61..81
FT /accession="MIMAT0000570"
FT /product="rno-miR-331-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], SOLiD [2]"
XX
SQ Sequence 96 BP; 21 A; 27 C; 23 G; 0 T; 25 other;
gagucugguc uuguuugggu uuguucuagg uaugguccca gggaucccag aucaaaccag 60
gccccugggc cuauccuaga accaaccuaa acccau 96
//
ID mmu-mir-331 standard; RNA; MMU; 96 BP.
XX
AC MI0000609;
XX
DE Mus musculus miR-331 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619347; Mir331.
DR ENTREZGENE; 723908; Mir331.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..47
FT /accession="MIMAT0004643"
FT /product="mmu-miR-331-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT miRNA 61..81
FT /accession="MIMAT0000571"
FT /product="mmu-miR-331-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT /similarity="MI0000608"
XX
SQ Sequence 96 BP; 20 A; 26 C; 24 G; 0 T; 26 other;
gagucugguu uuguuugggu uuguucuagg uaugguccca gggaucccag aucaaaccag 60
gccccugggc cuauccuaga accaaccuaa acccgu 96
//
ID rno-mir-140 standard; RNA; RNO; 99 BP.
XX
AC MI0000611;
XX
DE Rattus norvegicus miR-140 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314276; Mir140.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC The cloned miRNA appears to be expressed from the 3' strand of the
CC precursor, and is therefore named miR-140* here. The mature sequence
CC shown here represents the most commonly cloned form from large-scale
CC cloning studies [4]. The ends of the miRNA may be offset with respect to
CC previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0000573"
FT /product="rno-miR-140-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4], SOLiD [5]"
FT miRNA 61..81
FT /accession="MIMAT0000574"
FT /product="rno-miR-140-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4], Northern [1], SOLiD [5]"
XX
SQ Sequence 99 BP; 20 A; 26 C; 25 G; 0 T; 28 other;
gugucucucu cuguguccug ccagugguuu uacccuaugg uagguuacau caugcuguuc 60
uaccacaggg uagaaccacg gacaggauac uggagcacc 99
//
ID rno-mir-335 standard; RNA; RNO; 98 BP.
XX
AC MI0000612;
XX
DE Rattus norvegicus miR-335 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR ENTREZGENE; 100314182; Mir335.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000575"
FT /product="rno-miR-335"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
XX
SQ Sequence 98 BP; 22 A; 20 C; 19 G; 0 T; 37 other;
ucuuuugggc gggggucaag agcaauaacg aaaaauguuu guuuuucgua aaccguuuuu 60
cauuauugcu ccugaccucc ucucauuugu uauagcca 98
//
ID rno-mir-336 standard; RNA; RNO; 96 BP.
XX
AC MI0000613;
XX
DE Rattus norvegicus miR-336 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314219; Mir336.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0000576"
FT /product="rno-miR-336-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT miRNA 52..75
FT /accession="MIMAT0017034"
FT /product="rno-miR-336-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 96 BP; 26 A; 21 C; 24 G; 0 T; 25 other;
augugaccgu gccucucacc cuuccauauc uagucucuga gaaaaaugaa gacuggauuc 60
caugaaggga ugugaggccu ggaaacugga gcuuua 96
//
ID rno-mir-337 standard; RNA; RNO; 97 BP.
XX
AC MI0000614;
XX
DE Rattus norvegicus miR-337 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313976; Mir337.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..49
FT /accession="MIMAT0017035"
FT /product="rno-miR-337-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 60..82
FT /accession="MIMAT0000577"
FT /product="rno-miR-337-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 97 BP; 21 A; 22 C; 28 G; 0 T; 26 other;
aguguaguga gaaguugggg ggugggaacg gcgucaugca ggaguugauu gcacagccau 60
ucagcuccua uaugaugccu uucuucaccc ccuucaa 97
//
ID mmu-mir-337 standard; RNA; MMU; 97 BP.
XX
AC MI0000615;
XX
DE Mus musculus miR-337 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619351; Mir337.
DR ENTREZGENE; 723843; Mir337.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This mouse miRNA is predicted based on homology to the verified rat
CC sequence (MIR:MI0000614). Seitz et al. later predicted a cluster of 40
CC miRNAs in the imprinted human 14q32 domain, and confirmed the expression
CC of a subset by Northern blot or primer extension in mouse [2]. Landgraf
CC et al. later cloned and sequenced mature products from both arms of the
CC hairpin, named here miR-337-5p and miR-337-3p [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..51
FT /accession="MIMAT0004644"
FT /product="mmu-miR-337-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT miRNA 62..83
FT /accession="MIMAT0000578"
FT /product="mmu-miR-337-3p"
FT /evidence=experimental
FT /experiment="PCR [2], cloned [3], Illumina [4-5]"
FT /similarity="MI0000614"
XX
SQ Sequence 97 BP; 20 A; 23 C; 28 G; 0 T; 26 other;
caguguagug agaaguuggg gggugggaac ggcgucaugc aggaguugau ugcacagcca 60
uucagcuccu auaugaugcc uuucuucacc cccuuca 97
//
ID rno-mir-148b standard; RNA; RNO; 97 BP.
XX
AC MI0000616;
XX
DE Rattus norvegicus miR-148b stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313977; Mir148b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0004645"
FT /product="rno-miR-148b-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT miRNA 61..82
FT /accession="MIMAT0000579"
FT /product="rno-miR-148b-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [3]"
XX
SQ Sequence 97 BP; 24 A; 21 C; 22 G; 0 T; 30 other;
caggcacucu uagcauuuga ggugaaguuc uguuauacac ucaggcugug gcucugaaag 60
ucagugcauc acagaacuuu gucucgaaag cuuucua 97
//
ID mmu-mir-148b standard; RNA; MMU; 97 BP.
XX
AC MI0000617;
XX
DE Mus musculus miR-148b stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618734; Mir148b.
DR ENTREZGENE; 724064; Mir148b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..47
FT /accession="MIMAT0017036"
FT /product="mmu-miR-148b-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 61..82
FT /accession="MIMAT0000580"
FT /product="mmu-miR-148b-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT /similarity="MI0000616"
XX
SQ Sequence 97 BP; 24 A; 22 C; 22 G; 0 T; 29 other;
caggcacccu uagcauuuga ggugaaguuc uguuauacac ucaggcugug gcucugaaag 60
ucagugcauc acagaacuuu gucucgaaag cuuucua 97
//
ID rno-mir-338 standard; RNA; RNO; 66 BP.
XX
AC MI0000618;
XX
DE Rattus norvegicus miR-338 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313978; Mir338.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0004646"
FT /product="rno-miR-338-5p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [5]"
FT miRNA 41..63
FT /accession="MIMAT0000581"
FT /product="rno-miR-338-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1], SOLiD [5]"
XX
SQ Sequence 66 BP; 16 A; 15 C; 17 G; 0 T; 18 other;
uccccaacaa uauccuggug cugagugggu gcacagugac uccagcauca gugauuuugu 60
ugaaga 66
//
ID mmu-mir-338 standard; RNA; MMU; 98 BP.
XX
AC MI0000619;
XX
DE Mus musculus miR-338 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619352; Mir338.
DR ENTREZGENE; 723844; Mir338.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..47
FT /accession="MIMAT0004647"
FT /product="mmu-miR-338-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT miRNA 61..82
FT /accession="MIMAT0000582"
FT /product="mmu-miR-338-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT /similarity="MI0000618"
XX
SQ Sequence 98 BP; 22 A; 28 C; 27 G; 0 T; 21 other;
caacgcugca caggccgucc uccccaacaa uauccuggug cugagugggu gcacagugac 60
uccagcauca gugauuuugu ugaagagggc agcugcca 98
//
ID rno-mir-339 standard; RNA; RNO; 96 BP.
XX
AC MI0000620;
XX
DE Rattus norvegicus miR-339 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314146; Mir339.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC The miR-339-5p sequence reported in [1] contains two 3' terminal U
CC residues, which conflict with the precursor sequence shown here. The
CC mature sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [2]. The ends of the miRNA may be offset with
CC respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000583"
FT /product="rno-miR-339-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT miRNA 51..73
FT /accession="MIMAT0004648"
FT /product="rno-miR-339-3p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
XX
SQ Sequence 96 BP; 18 A; 37 C; 26 G; 0 T; 15 other;
acggggugga caccgucccu guccuccagg agcucacgua ugccugccug ugagcgccuc 60
gacgacagag ccagagucca ccccugcacu gcccaa 96
//
ID mmu-mir-339 standard; RNA; MMU; 96 BP.
XX
AC MI0000621;
XX
DE Mus musculus miR-339 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619354; Mir339.
DR ENTREZGENE; 723898; Mir339.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000584"
FT /product="mmu-miR-339-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT /similarity="MI0000620"
FT miRNA 51..73
FT /accession="MIMAT0004649"
FT /product="mmu-miR-339-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
XX
SQ Sequence 96 BP; 14 A; 37 C; 27 G; 0 T; 18 other;
acgggguggc cacuaucccu guccuccagg agcucacgua ugccugccug ugagcgccuc 60
ggcgacagag ccggugucca ccccugcacu guccac 96
//
ID rno-mir-340-1 standard; RNA; RNO; 98 BP.
XX
AC MI0000622;
XX
DE Rattus norvegicus miR-340-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR ENTREZGENE; 100314220; Mir340.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0004650"
FT /product="rno-miR-340-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 61..83
FT /accession="MIMAT0000585"
FT /product="rno-miR-340-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 98 BP; 22 A; 18 C; 22 G; 0 T; 36 other;
cacuuguacu cggugugauu auaaagcaau gagacugauu gucauguguc guuuguggga 60
uccgucucag uuacuuuaua gccauaccug guaucuua 98
//
ID mmu-mir-340 standard; RNA; MMU; 98 BP.
XX
AC MI0000623;
XX
DE Mus musculus miR-340 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619355; Mir340.
DR ENTREZGENE; 723845; Mir340.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0004651"
FT /product="mmu-miR-340-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT miRNA 61..82
FT /accession="MIMAT0000586"
FT /product="mmu-miR-340-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT /similarity="MI0000622"
XX
SQ Sequence 98 BP; 24 A; 16 C; 21 G; 0 T; 37 other;
caauuguacu uggugugauu auaaagcaau gagacugauu gucauauguc guuuguggga 60
uccgucucag uuacuuuaua gccauaccug guaucuua 98
//
ID rno-mir-341 standard; RNA; RNO; 96 BP.
XX
AC MI0000624;
XX
DE Rattus norvegicus miR-341 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313979; Mir341.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..77
FT /accession="MIMAT0000587"
FT /product="rno-miR-341"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
XX
SQ Sequence 96 BP; 12 A; 25 C; 32 G; 0 T; 27 other;
aaaaugauga ugucaguugg ccggucggcc gaucgcucgg ucugucaguc agucggucgg 60
ucgaucgguc ggucggucag ucggcuuccu gucuuc 96
//
ID mmu-mir-341 standard; RNA; MMU; 96 BP.
XX
AC MI0000625;
XX
DE Mus musculus miR-341 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619357; Mir341.
DR ENTREZGENE; 723846; Mir341.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This mouse miRNA is predicted based on homology to the verified rat
CC sequence (MIR:MI0000624) - its expression was later verified in mouse [2].
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..42
FT /accession="MIMAT0017037"
FT /product="mmu-miR-341-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 57..77
FT /accession="MIMAT0000588"
FT /product="mmu-miR-341-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0000624"
XX
SQ Sequence 96 BP; 12 A; 25 C; 32 G; 0 T; 27 other;
aaaaugauga ugucaguugg ccggucggcc gaucgcucgg ucugucaguc agucggucgg 60
ucgaucgguc ggucggucag ucggcuuccu gucuuc 96
//
ID rno-mir-342 standard; RNA; RNO; 99 BP.
XX
AC MI0000626;
XX
DE Rattus norvegicus miR-342 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313980; Mir342.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0004652"
FT /product="rno-miR-342-5p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [5]"
FT miRNA 61..83
FT /accession="MIMAT0000589"
FT /product="rno-miR-342-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1], SOLiD [5]"
XX
SQ Sequence 99 BP; 25 A; 21 C; 30 G; 0 T; 23 other;
gaaaaugggc ucaaggugag gggugcuauc ugugauugag ggacaugguc aauggaauug 60
ucucacacag aaaucgcacc cgucaccuug gccugcuga 99
//
ID mmu-mir-342 standard; RNA; MMU; 99 BP.
XX
AC MI0000627;
XX
DE Mus musculus miR-342 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619358; Mir342.
DR ENTREZGENE; 723909; Mir342.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This mouse miRNA is predicted based on homology to the verified rat
CC sequence (MIR:MI0000626). Seitz et al. independently predicted the miRNA
CC hairpin precursor sequence by conservation between mouse and human [2].
CC Landgraf et al. later cloned and sequenced mature products from both arms
CC of the predicted hairpin [3]. The mature sequences shown here represent
CC the most commonly cloned forms from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0004653"
FT /product="mmu-miR-342-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT miRNA 61..83
FT /accession="MIMAT0000590"
FT /product="mmu-miR-342-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0000626"
XX
SQ Sequence 99 BP; 25 A; 21 C; 30 G; 0 T; 23 other;
gaaaaugggc ucaaggugag gggugcuauc ugugauugag ggacaugguc aauggaauug 60
ucucacacag aaaucgcacc cgucaccuug gccugcuga 99
//
ID rno-mir-343 standard; RNA; RNO; 93 BP.
XX
AC MI0000628;
XX
DE Rattus norvegicus miR-343 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314183; Mir343.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC The sequence reported in [1] contains a 3' terminal UU sequence, which
CC conflicts with the precursor sequence shown here.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..80
FT /accession="MIMAT0000591"
FT /product="rno-miR-343"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 93 BP; 16 A; 28 C; 33 G; 0 T; 16 other;
gcaccuucau ggaccuggag uagagugggu guggcggggg gagcagggcc cagggcaacc 60
ucucccuccg ugugcccaga uccugcaugc caa 93
//
ID rno-mir-344a-1 standard; RNA; RNO; 107 BP.
XX
AC MI0000629;
XX
DE Rattus norvegicus miR-344a-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313981; Mir344-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..39
FT /accession="MIMAT0004654"
FT /product="rno-miR-344a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT miRNA 59..81
FT /accession="MIMAT0000592"
FT /product="rno-miR-344a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], SOLiD [3]"
XX
SQ Sequence 107 BP; 31 A; 27 C; 26 G; 0 T; 23 other;
gcagccaggg uuuuuaccag ucaggcuccu ggcuagauuc cagguaccaa cugguaccug 60
aucuagccaa agccugacug uaagcuguaa aaacaaagga agacugc 107
//
ID mmu-mir-344-1 standard; RNA; MMU; 95 BP.
XX
AC MI0000630;
XX
DE Mus musculus miR-344-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619359; Mirn344.
DR ENTREZGENE; 723931; Mir344.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This mouse miRNA is predicted based on homology to the verified rat
CC sequence (MIR:MI0000629) - its expression was later independently verified
CC in mouse [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..46
FT /accession="MIMAT0017038"
FT /product="mmu-miR-344-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 61..83
FT /accession="MIMAT0000593"
FT /product="mmu-miR-344-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [4-5]"
FT /similarity="MI0000629"
XX
SQ Sequence 95 BP; 22 A; 28 C; 23 G; 0 T; 22 other;
cugcagccag gguuuuuacc agucaggcuc cuggcuagau uccagguacc agcugguacc 60
ugaucuagcc aaagccugac uguaagcccu gaaca 95
//
ID rno-mir-345 standard; RNA; RNO; 96 BP.
XX
AC MI0000631;
XX
DE Rattus norvegicus miR-345 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314147; Mir345.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0000594"
FT /product="rno-miR-345-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], SOLiD [5]"
FT miRNA 54..75
FT /accession="MIMAT0004655"
FT /product="rno-miR-345-3p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [5]"
XX
SQ Sequence 96 BP; 16 A; 28 C; 30 G; 0 T; 22 other;
acccaagucc aggccugcug accccuaguc cagugcuugu gguggcuacu gggcccugaa 60
cuaggggucu ggagaccugg guuugaucuc cacagg 96
//
ID mmu-mir-345 standard; RNA; MMU; 96 BP.
XX
AC MI0000632;
XX
DE Mus musculus miR-345 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619361; Mir345.
DR ENTREZGENE; 723946; Mir345.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This mouse miRNA was predicted based on homology to the verified rat
CC sequence (MIR:MI0000631). Seitz et al. independently predicted the miRNA
CC hairpin precursor sequence by conservation between mouse and human [2].
CC Landgraf et al. later verified mature miRNA expression from both arms of
CC the hairpin precursor [3]. The mature sequence shown here represents the
CC most commonly cloned form from large-scale cloning studies [3]. The 5'
CC end of the miRNA may be offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000595"
FT /product="mmu-miR-345-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0000631"
FT miRNA 55..76
FT /accession="MIMAT0004656"
FT /product="mmu-miR-345-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 96 BP; 16 A; 28 C; 30 G; 0 T; 22 other;
acccaagucc aggccugcug accccuaguc cagugcuugu gguggcuacu gggcccugaa 60
cuaggggucu ggagaccugg guuugaucuc cacagg 96
//
ID rno-mir-346 standard; RNA; RNO; 98 BP.
XX
AC MI0000633;
XX
DE Rattus norvegicus miR-346 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314221; Mir346.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC The sequence reported in [1] contains two 3' terminal A residues, which
CC conflict with the precursor sequence shown here.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000596"
FT /product="rno-miR-346"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
XX
SQ Sequence 98 BP; 9 A; 28 C; 34 G; 0 T; 27 other;
ucuguguugg gcaucugucu gccugagugc cugccucucu guugcucuga aggaggcagg 60
ggcugggccu gcagcugccu gggcagagcu gcuccuuc 98
//
ID mmu-mir-346 standard; RNA; MMU; 98 BP.
XX
AC MI0000634;
XX
DE Mus musculus miR-346 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619362; Mir346.
DR ENTREZGENE; 723847; Mir346.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This mouse miRNA is predicted based on homology to the verified rat
CC sequence (MIR:MI0000633) - its expression has not been verified in mouse.
CC The sequence reported in [1] contains two 3' terminal A residues, which
CC conflict with the precursor sequence shown here.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000597"
FT /product="mmu-miR-346-5p"
FT /evidence=experimental
FT /experiment="Illumina [2-3]"
FT /similarity="MI0000633"
FT miRNA 54..75
FT /accession="MIMAT0017039"
FT /product="mmu-miR-346-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 98 BP; 8 A; 29 C; 35 G; 0 T; 26 other;
ucuguguugg gcgucugucu gcccgagugc cugccucucu guugcucuga aggaggcagg 60
ggcugggccu gcagcugccu gggcagagcu gcuccuuc 98
//
ID rno-mir-347 standard; RNA; RNO; 92 BP.
XX
AC MI0000635;
XX
DE Rattus norvegicus miR-347 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
DR ENTREZGENE; 100313982; Mir347.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..79
FT /accession="MIMAT0000598"
FT /product="rno-miR-347"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 92 BP; 5 A; 29 C; 40 G; 0 T; 18 other;
gagccccugc uggugggcgc ggggcggggg uuucaggugg ucucgcggug gccgcccgac 60
ugucccucug ggucgcccag cuggggaguu cc 92
//
ID rno-mir-349 standard; RNA; RNO; 97 BP.
XX
AC MI0000636;
XX
DE Rattus norvegicus miR-349 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
DR ENTREZGENE; 100313983; Mir349.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..82
FT /accession="MIMAT0000599"
FT /product="rno-miR-349"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1]"
XX
SQ Sequence 97 BP; 16 A; 27 C; 28 G; 0 T; 26 other;
gaagacucua gcauguaagg uugggggagg gggcuguguc uagcaagucu ucuuccccca 60
cagcccugcu gucuuaaccu cuagguguuc cggcucc 97
//
ID rno-mir-129-2 standard; RNA; RNO; 97 BP.
XX
AC MI0000637;
XX
DE Rattus norvegicus miR-129-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313984; Mir129-2.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations. Kim et al [1] and He et al [4] both
CC identify the mature product from the 3' arm, named miR-129* here.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0000600"
FT /product="rno-miR-129-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], SOLiD [5]"
FT /similarity="MI0000585"
FT miRNA 61..82
FT /accession="MIMAT0000601"
FT /product="rno-miR-129-2-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], Northern [1], SOLiD [5]"
XX
SQ Sequence 97 BP; 21 A; 29 C; 25 G; 0 T; 22 other;
agacugcccu ucgcgaaucu uuuugcgguc ugggcuugcu guacauaacu caauagccgg 60
aagcccuuac cccaaaaagc auucgcggag ggcgcgc 97
//
ID rno-mir-20a standard; RNA; RNO; 85 BP.
XX
AC MI0000638;
XX
DE Rattus norvegicus miR-20a stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314222; Mir20a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000602"
FT /product="rno-miR-20a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT miRNA 52..72
FT /accession="MIMAT0000603"
FT /product="rno-miR-20a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [4]"
XX
SQ Sequence 85 BP; 20 A; 20 C; 20 G; 0 T; 25 other;
cagcuucugu agcacuaaag ugcuuauagu gcagguagug ugucgucauc uacugcauua 60
cgagcacuua caguacugcc agcug 85
//
ID rno-mir-350-1 standard; RNA; RNO; 99 BP.
XX
AC MI0000639;
XX
DE Rattus norvegicus miR-350-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313985; Mir350.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This rat miRNA has a predicted homologue in mouse (MIR:MI0000640). The
CC sequence reported in [1] contains a 5' terminal A residue, which conflicts
CC with the precursor sequence shown here.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..84
FT /accession="MIMAT0000604"
FT /product="rno-miR-350"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 99 BP; 30 A; 21 C; 23 G; 0 T; 25 other;
agaugccuug cuccuacaag aguaaagugc acgugcuuug ggacagugag gaaaauaaug 60
uucacaaagc ccauacacuu ucacccuuua ggagaguug 99
//
ID mmu-mir-350 standard; RNA; MMU; 99 BP.
XX
AC MI0000640;
XX
DE Mus musculus miR-350 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619366; Mir350.
DR ENTREZGENE; 723921; Mir350.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This mouse miRNA is predicted based on homology to the verified rat
CC sequence (MIR:MI0000639) - its expression was later independently verified
CC in mouse [2]. The sequence reported in [1] contains a 5' terminal A
CC residue, which conflicts with the precursor sequence shown here. The
CC mature sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..42
FT /accession="MIMAT0017040"
FT /product="mmu-miR-350-5p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
FT miRNA 61..82
FT /accession="MIMAT0000605"
FT /product="mmu-miR-350-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [4,6]"
FT /similarity="MI0000639"
XX
SQ Sequence 99 BP; 30 A; 21 C; 23 G; 0 T; 25 other;
agaugccuug cuccuacaag aguaaagugc augcgcuuug ggacagugag gaaaauaaug 60
uucacaaagc ccauacacuu ucacccuuua ggagaguug 99
//
ID rno-mir-7a-1 standard; RNA; RNO; 97 BP.
XX
AC MI0000641;
XX
DE Rattus norvegicus miR-7a-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314148; Mir7a-1.
XX
CC Landgraf et al. show that the 5' product is the predominant one [3]. The
CC 3' product is renamed miR-7a*. The mature sequence shown here represents
CC the most commonly cloned form from large-scale cloning studies [3]. The
CC ends of the miRNA may be offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0000606"
FT /product="rno-miR-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], SOLiD [4]"
FT /similarity="MI0001360"
FT miRNA 60..81
FT /accession="MIMAT0000607"
FT /product="rno-miR-7a-1-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1], SOLiD [4]"
XX
SQ Sequence 97 BP; 26 A; 19 C; 22 G; 0 T; 30 other;
uguuggccua guucugugug gaagacuagu gauuuuguug uuuuuagaua acuaagacga 60
caacaaauca cagucugcca uauggcacag gccaccu 97
//
ID rno-mir-351-1 standard; RNA; RNO; 81 BP.
XX
AC MI0000642;
XX
DE Rattus norvegicus miR-351-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314289; Mir351.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC The sequence reported in [1] contains a 3' terminal U residue, which
CC conflicts with the precursor sequence shown here. The mature sequence
CC shown here represents the most commonly cloned form from large-scale
CC cloning studies [3]. The ends of the miRNA may be offset with respect to
CC previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..40
FT /accession="MIMAT0000608"
FT /product="rno-miR-351-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], SOLiD [4]"
FT miRNA 56..76
FT /accession="MIMAT0017041"
FT /product="rno-miR-351-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 81 BP; 23 A; 20 C; 24 G; 0 T; 14 other;
cauggcaccu ccauuucccu gaggagcccu uugagccuga ggugaaaaaa aaacagguca 60
agaggcgccu gggaacugga g 81
//
ID mmu-mir-351 standard; RNA; MMU; 99 BP.
XX
AC MI0000643;
XX
DE Mus musculus miR-351 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619367; Mir351.
DR ENTREZGENE; 723910; Mir351.
XX
CC The predominant miRNA cloned by Langraf et al. has a 3' terminal U
CC residue, which is incompatible with the genome sequence [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0000609"
FT /product="mmu-miR-351-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2,4]"
FT /similarity="MI0000642"
FT miRNA 58..78
FT /accession="MIMAT0017042"
FT /product="mmu-miR-351-3p"
FT /evidence=experimental
FT /experiment="454 [3], Illumina [4]"
XX
SQ Sequence 99 BP; 30 A; 22 C; 28 G; 0 T; 19 other;
cauggcaccu ccguuucccu gaggagcccu uugagccugg agugaaaaaa aaaaacaggu 60
caagaggcgc cugggaacug gagaagagug uuaaacuuc 99
//
ID rno-mir-352 standard; RNA; RNO; 96 BP.
XX
AC MI0000644;
XX
DE Rattus norvegicus miR-352 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
DR ENTREZGENE; 100313986; Mir352.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC miR-352 is closely related to let-7d (a single deletion), but the
CC predicted hairpin precursor sequences are unrelated, and express their
CC mature forms from opposite strands.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..81
FT /accession="MIMAT0000610"
FT /product="rno-miR-352"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 96 BP; 28 A; 3 C; 30 G; 0 T; 35 other;
guacauaugu ugaagauuau uaauauauag aguggguguu guggugguag uaugauaugu 60
agaguaguag guugcauagu acgauguagu guauga 96
//
ID rno-mir-135b standard; RNA; RNO; 97 BP.
XX
AC MI0000645;
XX
DE Rattus norvegicus miR-135b stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313987; Mir135b.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000611"
FT /product="rno-miR-135b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT miRNA 55..76
FT /accession="MIMAT0017043"
FT /product="rno-miR-135b-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 97 BP; 18 A; 24 C; 27 G; 0 T; 28 other;
cgcucugcug uggccuaugg cuuuucauuc cuaugugauu gcuguuccga acucauguag 60
ggcuaaaagc caugggcuac agugaggggc aagcucc 97
//
ID mmu-mir-135b standard; RNA; MMU; 97 BP.
XX
AC MI0000646;
XX
DE Mus musculus miR-135b stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618732; Mir135b.
DR ENTREZGENE; 723818; Mir135b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000612"
FT /product="mmu-miR-135b-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT /similarity="MI0000645"
FT miRNA 55..76
FT /accession="MIMAT0017044"
FT /product="mmu-miR-135b-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 97 BP; 18 A; 25 C; 27 G; 0 T; 27 other;
cgcucugcug uggccuaugg cuuuucauuc cuaugugauu gcugcuccga acucauguag 60
ggcuaaaagc caugggcuac agugaggggc aagcucc 97
//
ID rno-mir-151 standard; RNA; RNO; 97 BP.
XX
AC MI0000647;
XX
DE Rattus norvegicus miR-151 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314223; Mir151.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC Landgraf et al show that the 5' product is the predominant one [3]. The
CC mature sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [3]. The ends of the miRNA may be offset with
CC respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0000613"
FT /product="rno-miR-151-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT miRNA 51..71
FT /accession="MIMAT0000614"
FT /product="rno-miR-151-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
FT /similarity="MI0000173"
XX
SQ Sequence 97 BP; 18 A; 33 C; 22 G; 0 T; 24 other;
agcgcuuucc ugcccucgag gagcucacag ucuaguaugu cuccucccua cuagacugag 60
gcuccuugag gacagggauc gucauacuca ccucccg 97
//
ID rno-mir-101b standard; RNA; RNO; 97 BP.
XX
AC MI0000648;
XX
DE Rattus norvegicus miR-101b stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313988; Mir101b.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0017045"
FT /product="rno-miR-101b-5p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
FT miRNA 61..81
FT /accession="MIMAT0000615"
FT /product="rno-miR-101b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
XX
SQ Sequence 97 BP; 24 A; 17 C; 26 G; 0 T; 30 other;
aucugagacu gaacuguccu uuuucgguua ucaugguacc gaugcuguag aucugaaagg 60
uacaguacug ugauagcuga agaauggugg ugccauc 97
//
ID mmu-mir-101b standard; RNA; MMU; 97 BP.
XX
AC MI0000649;
XX
DE Mus musculus miR-101b stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618696; Mir101b.
DR ENTREZGENE; 724062; Mir101b.
XX
CC Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].
CC This mouse miRNA is predicted based on homology to the verified rat
CC sequence (MIR:MI0000648) -- expression in mouse was verified independently
CC [2]. The mature sequence shown here represents the most commonly cloned
CC form from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0017046"
FT /product="mmu-miR-101b-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 60..78
FT /accession="MIMAT0000616"
FT /product="mmu-miR-101b-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [4-5]"
FT /similarity="MI0000648"
XX
SQ Sequence 97 BP; 23 A; 20 C; 26 G; 0 T; 28 other;
aucugagacu gaacugcccu uuuucgguua ucaugguacc gaugcuguag cucugaaagg 60
uacaguacug ugauagcuga agaauggcgg ugccauc 97
//
ID hsa-mir-200c standard; RNA; HSA; 68 BP.
XX
AC MI0000650;
XX
DE Homo sapiens miR-200c stem-loop
XX
RN [1]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-200c; hsa-miR-200c.
DR HGNC; 31580; MIR200C.
DR ENTREZGENE; 406985; MIR200C.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0004657"
FT /product="hsa-miR-200c-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 44..66
FT /accession="MIMAT0000617"
FT /product="hsa-miR-200c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [2]"
XX
SQ Sequence 68 BP; 11 A; 15 C; 23 G; 0 T; 19 other;
cccucgucuu acccagcagu guuugggugc gguugggagu cucuaauacu gccggguaau 60
gauggagg 68
//
ID hsa-mir-1-1 standard; RNA; HSA; 71 BP.
XX
AC MI0000651;
XX
DE Homo sapiens miR-1-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR RFAM; RF00103; mir-1.
DR TARGETS:PICTAR-VERT; hsa-miR-1; hsa-miR-1.
DR HGNC; 31499; MIR1-1.
DR ENTREZGENE; 406904; MIR1-1.
XX
CC Lagos-Quintana et al. [1] reported the cloning of miR-1b, miR-1c and
CC miR-1d. The mature processed miR sequences are identical apart from the
CC 3' residues (A in mir-1b, C in mir-1c and UU in mir-1d). The 3' residues
CC of both miR-1b and miR-1c conflict with the predicted stem-loop precursor
CC sequence shown here and these sequences are not found in current
CC assemblies of human and mouse genomes. It is suggested that polyA
CC polymerase may add 1-3 nts to the 3' end of the mature transcript (Tom
CC Tuschl, pers. comm.). The common 21 nts of the 3 reported miR sequences
CC have been rationalised here and named miR-1. There are 2 pairs of
CC orthologous putative hairpin precursor structures named mir-1-1 (human
CC MIR:MI0000651, mouse MIR:MI0000139), and mir-1-2 (human MIR:MI0000437,
CC mouse MIR:MI0000652). The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0031892"
FT /product="hsa-miR-1-5p"
FT /evidence=not_experimental
FT miRNA 46..67
FT /accession="MIMAT0000416"
FT /product="hsa-miR-1-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000139"
XX
SQ Sequence 71 BP; 23 A; 12 C; 14 G; 0 T; 22 other;
ugggaaacau acuucuuuau augcccauau ggaccugcua agcuauggaa uguaaagaag 60
uauguaucuc a 71
//
ID mmu-mir-1a-2 standard; RNA; MMU; 72 BP.
XX
AC MI0000652;
XX
DE Mus musculus miR-1a-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00103; mir-1.
DR MGI; 3618746; Mir1-2.
DR ENTREZGENE; 723959; Mir1a-2.
XX
CC Lagos-Quintana et al. [1] reported the cloning of miR-1b, miR-1c and
CC miR-1d. The mature processed miR sequences are identical apart from the
CC 3' residues (A in mir-1b, C in mir-1c and UU in mir-1d). The 3' residues
CC of both miR-1b and miR-1c conflict with the predicted stem-loop precursor
CC sequence shown here and these sequences are not found in current
CC assemblies of human and mouse genomes. It is suggested that polyA
CC polymerase may add 1-3 nts to the 3' end of the mature transcript (Tom
CC Tuschl, pers. comm.). The common 21 nts of the 3 reported miR sequences
CC have been rationalised here and named miR-1. There are 2 pairs of
CC orthologous putative hairpin precursor structures named mir-1-1 (human
CC MIR:MI0000651, mouse MIR:MI0000139), and mir-1-2 (human MIR:MI0000437,
CC mouse MIR:MI0000652). The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0017047"
FT /product="mmu-miR-1a-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 47..68
FT /accession="MIMAT0000123"
FT /product="mmu-miR-1a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3]"
XX
SQ Sequence 72 BP; 23 A; 11 C; 13 G; 0 T; 25 other;
ucagagcaca uacuucuuua uguacccaua ugaacauuca gugcuaugga auguaaagaa 60
guauguauuu ug 72
//
ID osa-MIR156a standard; RNA; OSA; 100 BP.
XX
AC MI0000653;
XX
DE Oryza sativa miR156a stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
CC The stem-loop sequence represented here is predicted based on homology to
CC miRNAs cloned from Arabidopsis [1]. Its expression has not been verified
CC in rice.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..26
FT /accession="MIMAT0000618"
FT /product="osa-miR156a"
FT /evidence=not_experimental
FT /similarity="MI0000183"
XX
SQ Sequence 100 BP; 20 A; 25 C; 27 G; 0 T; 28 other;
ggagggugac agaagagagu gagcacacgu gguuguuucc uugcauaaau gaugccuaug 60
cuuggagcua cgcgugcuca cuucucucuc ugucaccucc 100
//
ID osa-MIR156b standard; RNA; OSA; 176 BP.
XX
AC MI0000654;
XX
DE Oryza sativa miR156b stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 43..62
FT /accession="MIMAT0000619"
FT /product="osa-miR156b-5p"
FT /evidence=not_experimental
FT /similarity="MI0000183"
FT miRNA 110..130
FT /accession="MIMAT0022845"
FT /product="osa-miR156b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 176 BP; 39 A; 40 C; 47 G; 0 T; 50 other;
uugucuugag aggggaagag aucucuaugg guuuuggagg ucugacagaa gagagugagc 60
acacacggug cuuucuuagc augcaagagc caugcuggga gcugugcgug cucacucucu 120
aucugucagc cguucaccau gcccaauaug auuaaucucc uucucucagu ugacag 176
//
ID osa-MIR156c standard; RNA; OSA; 149 BP.
XX
AC MI0000655;
XX
DE Oryza sativa miR156c stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..48
FT /accession="MIMAT0000620"
FT /product="osa-miR156c-5p"
FT /evidence=not_experimental
FT /similarity="MI0000183"
FT miRNA 100..121
FT /accession="MIMAT0022846"
FT /product="osa-miR156c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 149 BP; 31 A; 32 C; 41 G; 0 T; 45 other;
ggaggaagag aggggugaga ggugaggcug acagaagaga gugagcacac auggugacuu 60
ucuugcaugc ugaauggacu caugcuugaa gcuaugugug cucacuucuc ucucugucag 120
ccauuugauc ucucuuucuc ucuuucucc 149
//
ID osa-MIR156d standard; RNA; OSA; 129 BP.
XX
AC MI0000656;
XX
DE Oryza sativa miR156d stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
CC The stem-loop sequence represented here is predicted based on homology to
CC miRNAs cloned from Arabidopsis [1]. Its expression has not been verified
CC in rice.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..39
FT /accession="MIMAT0000621"
FT /product="osa-miR156d"
FT /evidence=not_experimental
FT /similarity="MI0000183"
XX
SQ Sequence 129 BP; 27 A; 41 C; 30 G; 0 T; 31 other;
ggagaagcuc ucaugagauu gacagaagag agugagcaca cggcgugaug gccggcauaa 60
aaucuauccc guccucgccg cgugcucacu ccucuuucug ucacccucuu ucucucaggg 120
cucaacucc 129
//
ID osa-MIR156e standard; RNA; OSA; 104 BP.
XX
AC MI0000657;
XX
DE Oryza sativa miR156e stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
CC The stem-loop sequence represented here is predicted based on homology to
CC miRNAs cloned from Arabidopsis [1]. Its expression has not been verified
CC in rice.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..29
FT /accession="MIMAT0000622"
FT /product="osa-miR156e"
FT /evidence=not_experimental
FT /similarity="MI0000178"
XX
SQ Sequence 104 BP; 14 A; 33 C; 41 G; 0 T; 16 other;
ggcgcgaggu gacagaagag agugagcaca cggccgggcg ugacggcacc ggcgggcgug 60
ccgucgcggc cgcgugcuca cugcucuuuc ugucauccgg ugcc 104
//
ID osa-MIR156f standard; RNA; OSA; 186 BP.
XX
AC MI0000658;
XX
DE Oryza sativa miR156f stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..23
FT /accession="MIMAT0000623"
FT /product="osa-miR156f-5p"
FT /evidence=not_experimental
FT /similarity="MI0000178"
FT miRNA 164..185
FT /accession="MIMAT0022847"
FT /product="osa-miR156f-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 186 BP; 56 A; 39 C; 54 G; 0 T; 37 other;
aguugacaga agagagugag cacacagcgg ccagacugca ucgaucuauc aaucuucccu 60
ucgacaggau agcuagauag aaagaaagag aggccgucgg cggccaugga agagagagag 120
agagagagau gaaaugauga ugaugauaca gcugccgcug cgugcucacu ucucuuucug 180
ucagcu 186
//
ID osa-MIR156g standard; RNA; OSA; 116 BP.
XX
AC MI0000659;
XX
DE Oryza sativa miR156g stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..23
FT /accession="MIMAT0000624"
FT /product="osa-miR156g-5p"
FT /evidence=not_experimental
FT /similarity="MI0000178"
FT miRNA 94..115
FT /accession="MIMAT0022848"
FT /product="osa-miR156g-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 116 BP; 27 A; 31 C; 34 G; 0 T; 24 other;
ggcugacaga agagagugag cacacagcgg gcagacugca ucugaauuac cuguugcgac 60
gaagaagacg acggacgcag cuugccguug cgugcucacu ucucucucug ucagcu 116
//
ID osa-MIR156h standard; RNA; OSA; 186 BP.
XX
AC MI0000660;
XX
DE Oryza sativa miR156h stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..23
FT /accession="MIMAT0031156"
FT /product="osa-miR156h-5p"
FT /evidence=not_experimental
FT /similarity="MI0000178"
FT miRNA 164..185
FT /accession="MIMAT0031157"
FT /product="osa-miR156h-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 186 BP; 56 A; 39 C; 54 G; 0 T; 37 other;
aguugacaga agagagugag cacacagcgg ccagacugca ucgaucuauc aaucuucccu 60
ucgacaggau agcuagauag aaagaaagag aggccgucgg cggccaugga agagagagag 120
agagagagau gaaaugauga ugaugauaca gcugccgcug cgugcucacu ucucuuucug 180
ucagcu 186
//
ID osa-MIR156i standard; RNA; OSA; 90 BP.
XX
AC MI0000661;
XX
DE Oryza sativa miR156i stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
CC The stem-loop sequence represented here is predicted based on homology to
CC miRNAs cloned from Arabidopsis [1]. Its expression has not been verified
CC in rice.
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..22
FT /accession="MIMAT0000626"
FT /product="osa-miR156i"
FT /evidence=not_experimental
FT /similarity="MI0000178"
XX
SQ Sequence 90 BP; 15 A; 27 C; 34 G; 0 T; 14 other;
ggugacagaa gagagugagc acacggccgg gcggaacggc accggcggau gugccgucgc 60
ggccgcgugc ucacugcucu gucugucauc 90
//
ID osa-MIR156j standard; RNA; OSA; 165 BP.
XX
AC MI0000662;
XX
DE Oryza sativa miR156j stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 42..61
FT /accession="MIMAT0000627"
FT /product="osa-miR156j-5p"
FT /evidence=not_experimental
FT /similarity="MI0000179"
FT miRNA 108..129
FT /accession="MIMAT0022850"
FT /product="osa-miR156j-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 165 BP; 27 A; 57 C; 51 G; 0 T; 30 other;
uuggggcggg gcgggaucga gcauaugaaa ggcgagauug uugacagaag agagugagca 60
cacggcgcgg cggcuagcca ucggcgggau gccugccccc gccgcgugcu cgcuccucuu 120
ucugucagca ucucucauca cucccucccg caucccccgc cccga 165
//
ID osa-MIR160a standard; RNA; OSA; 88 BP.
XX
AC MI0000663;
XX
DE Oryza sativa miR160a stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..24
FT /accession="MIMAT0000628"
FT /product="osa-miR160a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000192"
FT miRNA 67..87
FT /accession="MIMAT0022851"
FT /product="osa-miR160a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 88 BP; 16 A; 25 C; 27 G; 0 T; 20 other;
gugugccugg cucccuguau gccacacaug uagaccaacc cauggugucu gguugccuac 60
uggguggcgu gcaaggagcc aagcaugc 88
//
ID osa-MIR160b standard; RNA; OSA; 139 BP.
XX
AC MI0000664;
XX
DE Oryza sativa miR160b stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..50
FT /accession="MIMAT0000629"
FT /product="osa-miR160b-5p"
FT /evidence=not_experimental
FT /similarity="MI0000192"
FT miRNA 93..113
FT /accession="MIMAT0022852"
FT /product="osa-miR160b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 139 BP; 21 A; 33 C; 42 G; 0 T; 43 other;
aagguuuggu uuugaucggc uugagagcgu gccuggcucc cuguaugcca cucauguagc 60
ccaauccaug guguguuugg augcuguggg uggcgugcaa ggagccaagc augcgugcca 120
ugaucucucu uucugccuu 139
//
ID osa-MIR160c standard; RNA; OSA; 99 BP.
XX
AC MI0000665;
XX
DE Oryza sativa miR160c stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..27
FT /accession="MIMAT0000630"
FT /product="osa-miR160c-5p"
FT /evidence=not_experimental
FT /similarity="MI0000190"
FT miRNA 75..95
FT /accession="MIMAT0022853"
FT /product="osa-miR160c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 99 BP; 23 A; 26 C; 27 G; 0 T; 23 other;
ggaaugugcc uggcucccug uaugccacuc aucuagagca acaaacuucu gcgagagguu 60
gccuaugaug gauggcgugc acggagccaa gcauauucc 99
//
ID osa-MIR160d standard; RNA; OSA; 142 BP.
XX
AC MI0000666;
XX
DE Oryza sativa miR160d stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..28
FT /accession="MIMAT0000631"
FT /product="osa-miR160d-5p"
FT /evidence=not_experimental
FT /similarity="MI0000190"
FT miRNA 119..139
FT /accession="MIMAT0022854"
FT /product="osa-miR160d-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 142 BP; 27 A; 40 C; 41 G; 0 T; 34 other;
ggggauaugc cuggcucccu guaugccacu cgcguagcug ccaaacucag uugaaacaac 60
ugccuucucc cggcgagauu caggcauugu guucguacgu uuggcucuac ugcggauggc 120
gugcgaggag ccaagcauga cc 142
//
ID osa-MIR162a standard; RNA; OSA; 171 BP.
XX
AC MI0000667;
XX
DE Oryza sativa miR162a stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
CC The stem-loop sequence represented here is predicted based on homology to
CC miRNAs cloned from Arabidopsis [1]. Its expression has not been verified
CC in rice.
XX
FH Key Location/Qualifiers
FH
FT miRNA 143..163
FT /accession="MIMAT0000632"
FT /product="osa-miR162a"
FT /evidence=not_experimental
FT /similarity="MI0000194"
XX
SQ Sequence 171 BP; 26 A; 45 C; 45 G; 0 T; 55 other;
ggugaugccu gggcgcagug guuuaucgau cccuucccug ccuuguggcg cugauccagg 60
agcggcgaau uucuuugaga ggguguucuu uuuuuuucuu ccuuuugguc cuuguugcag 120
ccaacgacaa cgcgggaauc gaucgauaaa ccucugcauc caguucucgc c 171
//
ID osa-MIR164a standard; RNA; OSA; 156 BP.
XX
AC MI0000668;
XX
DE Oryza sativa miR164a stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
CC The stem-loop sequence represented here is predicted based on homology to
CC miRNAs cloned from Arabidopsis [1]. Its expression has not been verified
CC in rice.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0000633"
FT /product="osa-miR164a"
FT /evidence=not_experimental
FT /similarity="MI0000197"
XX
SQ Sequence 156 BP; 28 A; 44 C; 37 G; 0 T; 47 other;
gugagaagga ccgcguugga gaagcagggc acgugcaugc auauguucau caucaucuuc 60
uuccuccucc ucuagcucca gccuugugug gguuggaagu uuagauagaa cucgcacugc 120
acguggucuc cuucuccauc ccggucuuuu ucucac 156
//
ID osa-MIR164b standard; RNA; OSA; 109 BP.
XX
AC MI0000669;
XX
DE Oryza sativa miR164b stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
CC The stem-loop sequence represented here is predicted based on homology to
CC miRNAs cloned from Arabidopsis [1]. Its expression has not been verified
CC in rice.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0000634"
FT /product="osa-miR164b"
FT /evidence=not_experimental
FT /similarity="MI0000197"
XX
SQ Sequence 109 BP; 17 A; 39 C; 31 G; 0 T; 22 other;
gugcacggug gagaagcagg gcacgugcau uaccauccac ucgccugccg gccgccggcc 60
gccauugcca uggaugguuc uucaugugcc cgucuucucc accgagcac 109
//
ID osa-MIR166a standard; RNA; OSA; 145 BP.
XX
AC MI0000670;
XX
DE Oryza sativa miR166a stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..42
FT /accession="MIMAT0022855"
FT /product="osa-miR166a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 110..130
FT /accession="MIMAT0000635"
FT /product="osa-miR166a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000201"
XX
SQ Sequence 145 BP; 26 A; 32 C; 36 G; 0 T; 51 other;
ugaagcuauu ugcuucugag uggaauguug ucugguucaa ggucucaugc accuugcggu 60
uuugaggaug auuugugcaa gguuuuucau uccucucauc cgugggaucu cggaccaggc 120
uucauucccc ucagagauag cuuca 145
//
ID osa-MIR166b standard; RNA; OSA; 206 BP.
XX
AC MI0000671;
XX
DE Oryza sativa miR166b stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..42
FT /accession="MIMAT0022856"
FT /product="osa-miR166b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 168..188
FT /accession="MIMAT0000636"
FT /product="osa-miR166b-3p"
FT /evidence=not_experimental
FT /similarity="MI0000201"
XX
SQ Sequence 206 BP; 47 A; 46 C; 43 G; 0 T; 70 other;
gggagccuuu ucauuuugag gggaauguug ucuggcucgg ggcuacuuuu aauuucucuc 60
ucuuuugaua ucuucuuuuc ucgaucuccu agcuugaucu uuugaucucu caaaucgauc 120
uuaagaaaaa gaucagucaa agagaugaga guagaugucu guagaucucg gaccaggcuu 180
cauucccccc aaacagaagg gcuccc 206
//
ID osa-MIR166c standard; RNA; OSA; 125 BP.
XX
AC MI0000672;
XX
DE Oryza sativa miR166c stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..31
FT /accession="MIMAT0022857"
FT /product="osa-miR166c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 91..111
FT /accession="MIMAT0000637"
FT /product="osa-miR166c-3p"
FT /evidence=not_experimental
FT /similarity="MI0000204"
XX
SQ Sequence 125 BP; 26 A; 31 C; 41 G; 0 T; 27 other;
ggcaguugag gggaauguug ucugguccga gaccuaacac cgggcggaau ggcggauuca 60
gcugcagcua agcaagcuag gugggggguu ucggaccagg cuucauuccc cccaacucaa 120
cuguu 125
//
ID osa-MIR166d standard; RNA; OSA; 125 BP.
XX
AC MI0000673;
XX
DE Oryza sativa miR166d stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0022858"
FT /product="osa-miR166d-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 91..111
FT /accession="MIMAT0000638"
FT /product="osa-miR166d-3p"
FT /evidence=not_experimental
FT /similarity="MI0000207"
XX
SQ Sequence 125 BP; 28 A; 28 C; 33 G; 0 T; 36 other;
gaagcuuuuu cacuuugagg ggaauguugu cuggcucgag gugcauggag aaaccucuga 60
ucgaucaggu uugaucugua gagacugauc ucggaccagg cuucauuccc cucaaguaaa 120
gcucc 125
//
ID osa-MIR166e standard; RNA; OSA; 137 BP.
XX
AC MI0000674;
XX
DE Oryza sativa miR166e stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0022859"
FT /product="osa-miR166e-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 108..128
FT /accession="MIMAT0000639"
FT /product="osa-miR166e-3p"
FT /evidence=not_experimental
FT /similarity="MI0000202"
XX
SQ Sequence 137 BP; 25 A; 27 C; 34 G; 0 T; 51 other;
uguuucuggg uggaauguug ucugguucaa ggccccuuag gaugugugau uuuugauggu 60
uuaugcauuc aucuugaugc gaacaucuau cucggaucuu uggguucucg aaccaggcuu 120
cauuccccuc agagaua 137
//
ID osa-MIR166f standard; RNA; OSA; 107 BP.
XX
AC MI0000675;
XX
DE Oryza sativa miR166f stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
CC The stem-loop sequence represented here is predicted based on homology to
CC miRNAs cloned from Arabidopsis [1]. Its expression has not been verified
CC in rice.
XX
FH Key Location/Qualifiers
FH
FT miRNA 72..92
FT /accession="MIMAT0000640"
FT /product="osa-miR166f"
FT /evidence=not_experimental
FT /similarity="MI0000201"
XX
SQ Sequence 107 BP; 21 A; 29 C; 31 G; 0 T; 26 other;
cgaucaucuu guugagagga augucgucug gccugagauc guaccacagu gguggguaca 60
cguggacggu cucggaccag gcuucauucc ccucaacaac ucgucgg 107
//
ID osa-MIR167a standard; RNA; OSA; 141 BP.
XX
AC MI0000676;
XX
DE Oryza sativa miR167a stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 18312648.
RA Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK;
RT "Identification of novel and candidate miRNAs in rice by high throughput
RT sequencing";
RL BMC Plant Biol. 8:25(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0000641"
FT /product="osa-miR167a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000208"
FT miRNA 110..131
FT /accession="MIMAT0006780"
FT /product="osa-miR167a-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 141 BP; 35 A; 29 C; 33 G; 0 T; 44 other;
uagugugaau gagugaagcu gccagcauga ucuagcucug auuaaucggc acuguuggcg 60
uacagucgau ugacuaaucg ucagaucugu guguguaaau cacuguuaga ucaugcauga 120
cagccucauu ucuucacacu g 141
//
ID osa-MIR167b standard; RNA; OSA; 163 BP.
XX
AC MI0000677;
XX
DE Oryza sativa miR167b stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
CC The stem-loop sequence represented here is predicted based on homology to
CC miRNAs cloned from Arabidopsis [1]. Its expression has not been verified
CC in rice.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..38
FT /accession="MIMAT0000642"
FT /product="osa-miR167b"
FT /evidence=not_experimental
FT /similarity="MI0000208"
XX
SQ Sequence 163 BP; 39 A; 39 C; 45 G; 0 T; 40 other;
gugcccaaga gaaagcguga agcugccagc augaucuaac uugcagacaa gaaaucagcu 60
cagcucgcug guuucgaaca ggaaggcggc uagcugaggc uucuucugag uacgugaugg 120
uuagaucaug cugugacagu uucacuccuu cccuguuggg cac 163
//
ID osa-MIR167c standard; RNA; OSA; 163 BP.
XX
AC MI0000678;
XX
DE Oryza sativa miR167c stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0000643"
FT /product="osa-miR167c-5p"
FT /evidence=not_experimental
FT /similarity="MI0000208"
FT miRNA 123..145
FT /accession="MIMAT0022860"
FT /product="osa-miR167c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 163 BP; 31 A; 43 C; 42 G; 0 T; 47 other;
uguccaaggg aacgagugaa gcugccagca ugaucuagcu cugaaugauc aacaagaugu 60
gcucccacac ugccuuccug uggaucuuga gcuguugcua gucuuguggu caugccuugc 120
uaggucaugc ugcggcagcc ucacuucuuc ccauuguugg gca 163
//
ID osa-MIR169a standard; RNA; OSA; 173 BP.
XX
AC MI0000679;
XX
DE Oryza sativa miR169a stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
CC The stem-loop sequence represented here is predicted based on homology to
CC miRNAs cloned from Arabidopsis [1]. Its expression has not been verified
CC in rice.
XX
FH Key Location/Qualifiers
FH
FT miRNA 38..58
FT /accession="MIMAT0000644"
FT /product="osa-miR169a"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 173 BP; 33 A; 48 C; 50 G; 0 T; 42 other;
cgccggcggc cugacauugg gaucggaggc cauggugcag ccaaggauga cuugccgauc 60
gaucgaucua ucuaugaagc uaagcuagcu ggccauggau ccauccauca auuggcaagu 120
uguucuuggc uacaucuugg ccccugcucc ucauguaagg ccggccugug gcg 173
//
ID osa-MIR171a standard; RNA; OSA; 96 BP.
XX
AC MI0000680;
XX
DE Oryza sativa miR171a stem-loop
XX
RN [1]
RX PUBMED; 12101121.
RA Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
RT "MicroRNAs in plants";
RL Genes Dev. 16:1616-1626(2002).
XX
CC The stem-loop sequence represented here is predicted based on homology to
CC miRNAs cloned from Arabidopsis [1]. Its expression has not been verified
CC in rice.
XX
FH Key Location/Qualifiers
FH
FT miRNA 67..87
FT /accession="MIMAT0000645"
FT /product="osa-miR171a"
FT /evidence=not_experimental
FT /similarity="MI0000214"
XX
SQ Sequence 96 BP; 25 A; 18 C; 24 G; 0 T; 29 other;
ggaaagagcg auauugguga gguucaaucc gaugauuggu uuuacagcag ugguaaaauc 60
aguaucugau ugagccgcgc caauaucucu uccucu 96
//
ID hsa-mir-155 standard; RNA; HSA; 65 BP.
XX
AC MI0000681;
XX
DE Homo sapiens miR-155 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 15738415.
RA Eis PS, Tam W, Sun L, Chadburn A, Li Z, Gomez MF, Lund E, Dahlberg JE;
RT "Accumulation of miR-155 and BIC RNA in human B cell lymphomas";
RL Proc Natl Acad Sci U S A. 102:3627-3632(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [7]
RX PUBMED; 17989717.
RA Marton S, Garcia MR, Robello C, Persson H, Trajtenberg F, Pritsch O,
RA Rovira C, Naya H, Dighiero G, Cayota A;
RT "Small RNAs analysis in CLL reveals a deregulation of miRNA expression and
RT novel miRNA candidates of putative relevance in CLL pathogenesis";
RL Leukemia. 22:330-338(2008).
XX
DR MIR; MI0000177; mmu-mir-155.
DR TARGETS:PICTAR-VERT; hsa-miR-155; hsa-miR-155.
DR HGNC; 31542; MIR155.
DR ENTREZGENE; 406947; MIR155.
XX
CC Human mir-155 is predicted based on homology to a cloned miR from mouse
CC (MIR:MI0000177) [1], and later experimentally validated in human HL-60
CC leukemia cells [2]. Like the mouse miRNA, human mir-155 resides in the
CC non-coding BIC transcript (EMBL:AF402776), located on chromosome 21 [3].
CC The mature form differs from that in mouse at a single position. Eis et
CC al. confirm that miR-155 is processed from the BIC transcript in human,
CC and demonstrate elevated expression of miR-155 in lymphoma samples [4].
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [5].
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..27
FT /accession="MIMAT0000646"
FT /product="hsa-miR-155-5p"
FT /evidence=experimental
FT /experiment="cloned [2,5-7]"
FT /similarity="MI0000177"
FT miRNA 43..64
FT /accession="MIMAT0004658"
FT /product="hsa-miR-155-3p"
FT /evidence=experimental
FT /experiment="cloned [5]"
XX
SQ Sequence 65 BP; 17 A; 14 C; 12 G; 0 T; 22 other;
cuguuaaugc uaaucgugau agggguuuuu gccuccaacu gacuccuaca uauuagcauu 60
aacag 65
//
ID hsa-mir-181b-2 standard; RNA; HSA; 89 BP.
XX
AC MI0000683;
XX
DE Homo sapiens miR-181b-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR RFAM; RF00076; mir-181.
DR TARGETS:PICTAR-VERT; hsa-miR-181b; hsa-miR-181b.
DR HGNC; 31551; MIR181B2.
DR ENTREZGENE; 406956; MIR181B2.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. Its
CC expression was later verified in human BC-1 cells [3]. There are two
CC predicted hairpin precursor sequences in the human genome; mir-181b-1
CC (MIR:MI0000270) is found on chromosome 1 [1], and mir-181b-2
CC (MIR:MI0000683) on chromosome 9 [2]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000257"
FT /product="hsa-miR-181b-5p"
FT /evidence=experimental
FT /experiment="cloned [3-5]"
FT /similarity="MI0001367"
FT miRNA 54..73
FT /accession="MIMAT0031893"
FT /product="hsa-miR-181b-2-3p"
FT /evidence=not_experimental
XX
SQ Sequence 89 BP; 25 A; 21 C; 20 G; 0 T; 23 other;
cugauggcug cacucaacau ucauugcugu cgguggguuu gagucugaau caacucacug 60
aucaaugaau gcaaacugcg gaccaaaca 89
//
ID mmu-mir-107 standard; RNA; MMU; 87 BP.
XX
AC MI0000684;
XX
DE Mus musculus miR-107 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MIR; MI0000114; hsa-mir-107.
DR MGI; 3619063; Mir107.
DR ENTREZGENE; 723826; Mir107.
XX
CC Mouse mir-107 is predicted [2] based on homology to a cloned miR from
CC human (MIR:MI0000114) [1], and later verified in mouse [3,4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0017048"
FT /product="mmu-miR-107-5p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
FT miRNA 52..74
FT /accession="MIMAT0000647"
FT /product="mmu-miR-107-3p"
FT /evidence=experimental
FT /experiment="cloned [3-4], Illumina [5,7]"
FT /similarity="MI0000114"
XX
SQ Sequence 87 BP; 19 A; 19 C; 22 G; 0 T; 27 other;
uucucugugc uuucagcuuc uuuacagugu ugccuugugg cauggaguuc aagcagcauu 60
guacagggcu aucaaagcac agagagc 87
//
ID mmu-mir-10a standard; RNA; MMU; 110 BP.
XX
AC MI0000685;
XX
DE Mus musculus miR-10a stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00104; mir-10.
DR MGI; 3619064; Mir10a.
DR ENTREZGENE; 723893; Mir10a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0000648"
FT /product="mmu-miR-10a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0001363"
FT miRNA 63..84
FT /accession="MIMAT0004659"
FT /product="mmu-miR-10a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 110 BP; 29 A; 21 C; 23 G; 0 T; 37 other;
gaccugucug ucuucuguau auacccugua gauccgaauu uguguaagga auuuuguggu 60
cacaaauucg uaucuagggg aauauguagu ugacauaaac acuccgcuca 110
//
ID mmu-mir-17 standard; RNA; MMU; 84 BP.
XX
AC MI0000687;
XX
DE Mus musculus miR-17 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00051; mir-17.
DR MGI; 3619065; Mir17.
DR ENTREZGENE; 723905; Mir17.
XX
CC Mouse mir-17 is predicted [4] based on homology to a cloned miR from human
CC (MIR:MI0000071) [1,2]. miRNAs derived from the 5' [1] and 3' [2] arms of
CC the human mir-17 precursor have been reported. Landgraf et al. show that
CC the 5' product is the predominant one [5]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [5].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0000649"
FT /product="mmu-miR-17-5p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
FT /similarity="MI0000071"
FT miRNA 51..72
FT /accession="MIMAT0000650"
FT /product="mmu-miR-17-3p"
FT /evidence=experimental
FT /experiment="cloned [3,5], Illumina [6-7]"
FT /similarity="MI0000071"
XX
SQ Sequence 84 BP; 22 A; 14 C; 24 G; 0 T; 24 other;
gucagaauaa ugucaaagug cuuacagugc agguagugau gugugcaucu acugcaguga 60
gggcacuugu agcauuaugc ugac 84
//
ID mmu-mir-19a standard; RNA; MMU; 82 BP.
XX
AC MI0000688;
XX
DE Mus musculus miR-19a stem-loop
XX
RN [1]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618743; Mir19a.
DR ENTREZGENE; 723891; Mir19a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0004660"
FT /product="mmu-miR-19a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 49..71
FT /accession="MIMAT0000651"
FT /product="mmu-miR-19a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 82 BP; 22 A; 16 C; 20 G; 0 T; 24 other;
gcagcccucu guuaguuuug cauaguugca cuacaagaag aauguaguug ugcaaaucua 60
ugcaaaacug augguggccu gc 82
//
ID mmu-mir-25 standard; RNA; MMU; 84 BP.
XX
AC MI0000689;
XX
DE Mus musculus miR-25 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619266; Mir25.
DR ENTREZGENE; 723926; Mir25.
XX
CC Mouse mir-25 is predicted [3] based on homology to a cloned miR from human
CC (MIR:MI0000082) [1]. Its expression has been later independently verified
CC in mouse [2,4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0017049"
FT /product="mmu-miR-25-5p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
FT miRNA 52..73
FT /accession="MIMAT0000652"
FT /product="mmu-miR-25-3p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [5,7]"
FT /similarity="MI0000082"
XX
SQ Sequence 84 BP; 12 A; 22 C; 31 G; 0 T; 19 other;
ggccaguguu gagaggcgga gacuugggca auugcuggac gcugcccugg gcauugcacu 60
ugucucgguc ugacagugcc ggcc 84
//
ID mmu-mir-28a standard; RNA; MMU; 86 BP.
XX
AC MI0000690;
XX
DE Mus musculus miR-28 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619267; Mir28.
DR ENTREZGENE; 723830; Mir28.
XX
CC Mouse mir-28 is predicted [2] based on homology to a cloned miR from human
CC (MIR:MI0000086) [1]. Its expression was later verified by cloning [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000653"
FT /product="mmu-miR-28a-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0000086"
FT miRNA 54..75
FT /accession="MIMAT0004661"
FT /product="mmu-miR-28a-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 86 BP; 16 A; 23 C; 22 G; 0 T; 25 other;
ggucccuacc uucaaggagc ucacagucua uugaguugcc uuucugauuc ucccacuaga 60
uugugagcug cuggagggca ggcacu 86
//
ID mmu-mir-32 standard; RNA; MMU; 70 BP.
XX
AC MI0000691;
XX
DE Mus musculus miR-32 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619331; Mir32.
DR ENTREZGENE; 723837; Mir32.
XX
CC Mouse mir-32 is predicted [3] based on homology to a cloned miR from human
CC (MIR:MI0000090) [1]. Its expression in mouse was later independently
CC verified [2]. The mature sequence shown here represents the most commonly
CC cloned form from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000654"
FT /product="mmu-miR-32-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [5,7]"
FT /similarity="MI0000090"
FT miRNA 47..67
FT /accession="MIMAT0017050"
FT /product="mmu-miR-32-3p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
XX
SQ Sequence 70 BP; 17 A; 11 C; 16 G; 0 T; 26 other;
ggagauauug cacauuacua aguugcaugu ugucacggcc ucaaugcaau uuagugugug 60
ugauauuuuc 70
//
ID mmu-mir-100 standard; RNA; MMU; 80 BP.
XX
AC MI0000692;
XX
DE Mus musculus miR-100 stem-loop
XX
RN [1]
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619057; Mir100.
DR ENTREZGENE; 723892; Mir100.
XX
CC Mouse mir-100 is predicted [2] based on homology to a cloned miR from
CC human (MIR:MI0000102) [1]. Its expression was later verified in mouse
CC [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0000655"
FT /product="mmu-miR-100-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4,6]"
FT /similarity="MI0000102"
FT miRNA 47..68
FT /accession="MIMAT0017051"
FT /product="mmu-miR-100-3p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
XX
SQ Sequence 80 BP; 17 A; 19 C; 19 G; 0 T; 25 other;
ccuguugcca caaacccgua gauccgaacu ugugcugauu cugcacacaa gcuugugucu 60
auagguaugu gucuguuagg 80
//
ID mmu-mir-139 standard; RNA; MMU; 68 BP.
XX
AC MI0000693;
XX
DE Mus musculus miR-139 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676824; Mir139.
DR ENTREZGENE; 387157; Mir139.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000656"
FT /product="mmu-miR-139-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 43..64
FT /accession="MIMAT0004662"
FT /product="mmu-miR-139-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 68 BP; 11 A; 16 C; 24 G; 0 T; 17 other;
guguauucua cagugcacgu gucuccagug uggcucggag gcuggagacg cggcccuguu 60
ggaguaac 68
//
ID mmu-mir-200c standard; RNA; MMU; 69 BP.
XX
AC MI0000694;
XX
DE Mus musculus miR-200c stem-loop
XX
RN [1]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618750; Mir200c.
DR ENTREZGENE; 723944; Mir200c.
XX
CC Mouse mir-200c is predicted [3] based on homology to a cloned miR from
CC human (MIR:MI0000650) [1]. Its expression in mouse was later verified
CC independently [2,4]. The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0004663"
FT /product="mmu-miR-200c-5p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
FT miRNA 45..67
FT /accession="MIMAT0000657"
FT /product="mmu-miR-200c-3p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [5-6]"
FT /similarity="MI0000650"
XX
SQ Sequence 69 BP; 11 A; 15 C; 23 G; 0 T; 20 other;
cccucgucuu acccagcagu guuugggugc ugguugggag ucucuaauac ugccggguaa 60
ugauggagg 69
//
ID mmu-mir-210 standard; RNA; MMU; 110 BP.
XX
AC MI0000695;
XX
DE Mus musculus miR-210 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676886; Mir210.
DR ENTREZGENE; 387206; Mir210.
XX
CC Mouse mir-210 is predicted [3] based on homology to a reported miR from
CC human (MIR:MI0000286) [1]. Its expression in mouse was later verified
CC independently [2,4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..49
FT /accession="MIMAT0017052"
FT /product="mmu-miR-210-5p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
FT miRNA 66..87
FT /accession="MIMAT0000658"
FT /product="mmu-miR-210-3p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [5,7]"
FT /similarity="MI0001379"
XX
SQ Sequence 110 BP; 17 A; 43 C; 33 G; 0 T; 17 other;
ccggggcagu cccuccaggc ucaggacagc cacugcccac cgcacacugc guugcuccgg 60
acccacugug cgugugacag cggcugaucu gucccugggc agcgcgaacc 110
//
ID mmu-mir-212 standard; RNA; MMU; 91 BP.
XX
AC MI0000696;
XX
DE Mus musculus miR-212 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676888; Mir212.
DR ENTREZGENE; 387208; Mir212.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0017053"
FT /product="mmu-miR-212-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 56..77
FT /accession="MIMAT0000659"
FT /product="mmu-miR-212-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0003385"
XX
SQ Sequence 91 BP; 13 A; 37 C; 26 G; 0 T; 15 other;
gggcagcgcg ccggcaccuu ggcucuagac ugcuuacugc ccgggccgcc uucaguaaca 60
gucuccaguc acggccaccg acgccuggcc c 91
//
ID mmu-mir-181a-1 standard; RNA; MMU; 87 BP.
XX
AC MI0000697;
XX
DE Mus musculus miR-181a-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629589; Mir181a-1.
DR ENTREZGENE; 735252; Mir181a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0000210"
FT /product="mmu-miR-181a-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [5-6]"
FT /similarity="MI0000223"
FT miRNA 54..75
FT /accession="MIMAT0000660"
FT /product="mmu-miR-181a-1-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [5-6]"
FT /similarity="MI0001380"
XX
SQ Sequence 87 BP; 25 A; 19 C; 18 G; 0 T; 25 other;
gguugcuuca gugaacauuc aacgcugucg gugaguuugg aauucaaaua aaaaccaucg 60
accguugauu guacccuaua gcuaacc 87
//
ID mmu-mir-214 standard; RNA; MMU; 110 BP.
XX
AC MI0000698;
XX
DE Mus musculus miR-214 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676890; Mir214.
DR ENTREZGENE; 387210; Mir214.
XX
CC Mouse mir-214 is predicted [2] based on homology to a reported miR from
CC human (MIR:MI0000290) [1]. Its expression was later verified by cloning
CC [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..51
FT /accession="MIMAT0004664"
FT /product="mmu-miR-214-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT miRNA 71..92
FT /accession="MIMAT0000661"
FT /product="mmu-miR-214-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0001381"
XX
SQ Sequence 110 BP; 25 A; 34 C; 28 G; 0 T; 23 other;
ggccuggcug gacagaguug ucaugugucu gccugucuac acuugcugug cagaacaucc 60
gcucaccugu acagcaggca cagacaggca gucacaugac aacccagccu 110
//
ID mmu-mir-216a standard; RNA; MMU; 72 BP.
XX
AC MI0000699;
XX
DE Mus musculus miR-216a stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676892; Mir216a.
DR ENTREZGENE; 387212; Mir216a.
XX
CC Mouse mir-216 is predicted [2] based on homology to a reported miR from
CC human (MIR:MI0000292) [1]. Its expression was later verified by cloning
CC [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000662"
FT /product="mmu-miR-216a-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4]"
FT /similarity="MI0001382"
FT miRNA 47..68
FT /accession="MIMAT0017054"
FT /product="mmu-miR-216a-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 72 BP; 15 A; 16 C; 16 G; 0 T; 25 other;
uugguuuaau cucagcuggc aacugugaga ugucccuauc auuccucaca guggucucug 60
ggauuaugcu aa 72
//
ID mmu-mir-218-1 standard; RNA; MMU; 110 BP.
XX
AC MI0000700;
XX
DE Mus musculus miR-218-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618751; Mir218-1.
DR ENTREZGENE; 723822; Mir218-1.
XX
CC Mouse miR-218 is predicted [2] based on homology to a reported miR from
CC human (MIR:MI0000294) [1]. Its expression was later verified by cloning
CC [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0000663"
FT /product="mmu-miR-218-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0000958"
FT miRNA 64..85
FT /accession="MIMAT0004665"
FT /product="mmu-miR-218-1-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 110 BP; 29 A; 22 C; 28 G; 0 T; 31 other;
gugauaaugg agcgagauuu ucuguugugc uugaucuaac caugugcuug cgagguauga 60
gaaaaacaug guuccgucaa gcaccaugga acgucacgca gcuuucuaca 110
//
ID mmu-mir-218-2 standard; RNA; MMU; 110 BP.
XX
AC MI0000701;
XX
DE Mus musculus miR-218-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618752; Mir218-2.
DR ENTREZGENE; 723924; Mir218-2.
XX
CC Mouse miR-218 is predicted [2] based on homology to a reported miR from
CC human (MIR:MI0000295) [1]. Its expression was later verified by cloning
CC [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0000663"
FT /product="mmu-miR-218-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0000957"
FT miRNA 67..88
FT /accession="MIMAT0005444"
FT /product="mmu-miR-218-2-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 110 BP; 23 A; 29 C; 31 G; 0 T; 27 other;
gaccaguugc cgcggggcuu uccuuugugc uugaucuaac cauguggugg aacgauggaa 60
acggaacaug guucugucaa gcaccgcgga aagcaucgcu cucuccugca 110
//
ID mmu-mir-219a-1 standard; RNA; MMU; 110 BP.
XX
AC MI0000702;
XX
DE Mus musculus miR-219a-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618753; Mir219-1.
DR ENTREZGENE; 723823; Mir219-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0000664"
FT /product="mmu-miR-219a-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0001384"
FT miRNA 62..83
FT /accession="MIMAT0017055"
FT /product="mmu-miR-219a-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 110 BP; 15 A; 42 C; 34 G; 0 T; 19 other;
ccgucccggg ccgcggcucc ugauugucca aacgcaauuc ucgagucucu ggcuccggcc 60
gagaguugcg ucuggacguc ccgagccgcc gcccccaaac cucgaggggg 110
//
ID mmu-mir-223 standard; RNA; MMU; 110 BP.
XX
AC MI0000703;
XX
DE Mus musculus miR-223 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2684360; Mir223.
DR ENTREZGENE; 723814; Mir223.
XX
CC Mouse mir-223 is predicted [2] based on homology to a reported miR from
CC human (MIR:MI0000300) [1]. Its expression was later verified by cloning
CC [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..48
FT /accession="MIMAT0017056"
FT /product="mmu-miR-223-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 68..89
FT /accession="MIMAT0000665"
FT /product="mmu-miR-223-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0001389"
XX
SQ Sequence 110 BP; 22 A; 26 C; 29 G; 0 T; 33 other;
ucuggccauc ugcaguguca cgcuccgugu auuugacaag cugaguugga cacucugugu 60
gguagagugu caguuuguca aauaccccaa guguggcuca ugccuaucag 110
//
ID mmu-mir-320 standard; RNA; MMU; 82 BP.
XX
AC MI0000704;
XX
DE Mus musculus miR-320 stem-loop
XX
RN [1]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619332; Mir320.
DR ENTREZGENE; 723838; Mir320.
XX
CC Mouse mir-320 is predicted [2] based on homology to a cloned miR from
CC human (MIR:MI0000542) [1]. Its expression was later verified in mouse
CC [3]. The mature sequence shown here represents the most commonly cloned
CC form from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0017057"
FT /product="mmu-miR-320-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 48..69
FT /accession="MIMAT0000666"
FT /product="mmu-miR-320-3p"
FT /evidence=experimental
FT /experiment="cloned [3-4], Illumina [5-6]"
FT /similarity="MI0000542"
XX
SQ Sequence 82 BP; 13 A; 24 C; 28 G; 0 T; 17 other;
gccucgccgc ccuccgccuu cucuucccgg uucuucccgg agucgggaaa agcuggguug 60
agagggcgaa aaaggaugug gg 82
//
ID mmu-mir-26a-2 standard; RNA; MMU; 84 BP.
XX
AC MI0000706;
XX
DE Mus musculus miR-26a-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [8]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619045; Mir26a-2.
DR ENTREZGENE; 723962; Mir26a-2.
XX
CC This sequence is a second predicted hairpin precursor for miR-26a
CC (MIR:MI0000573), conserved in human [3]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [5].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000533"
FT /product="mmu-miR-26a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4-5], Illumina [6,8]"
FT miRNA 52..73
FT /accession="MIMAT0017058"
FT /product="mmu-miR-26a-2-3p"
FT /evidence=experimental
FT /experiment="454 [7], Illumina [8]"
XX
SQ Sequence 84 BP; 14 A; 18 C; 27 G; 0 T; 25 other;
ggcugcggcu ggauucaagu aauccaggau aggcuguguc cguccaugag gccuguucuu 60
gauuacuugu uucuggaggc agcg 84
//
ID mmu-mir-33 standard; RNA; MMU; 69 BP.
XX
AC MI0000707;
XX
DE Mus musculus miR-33 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619343; Mir33.
DR ENTREZGENE; 723897; Mir33.
XX
CC Mouse mir-33 is predicted [2] based on homology to a cloned miR from human
CC (MIR:MI0000091) [1]. Its expression was later verified by cloning [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0000667"
FT /product="mmu-miR-33-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0000091"
FT miRNA 46..67
FT /accession="MIMAT0004666"
FT /product="mmu-miR-33-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 69 BP; 13 A; 15 C; 18 G; 0 T; 23 other;
cuguggugca uuguaguugc auugcauguu cuggcaauac cugugcaaug uuuccacagu 60
gcaucacgg 69
//
ID mmu-mir-211 standard; RNA; MMU; 106 BP.
XX
AC MI0000708;
XX
DE Mus musculus miR-211 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676887; Mir211.
DR ENTREZGENE; 387207; Mir211.
XX
CC Mouse mir-211 is predicted [2] based on homology to a reported miR from
CC human (MIR:MI0000287) [1]. Its expression has not been verified in mouse.
CC The mature miR differs from the human sequence at a single base. This
CC sequence maps to mouse chromosome 7.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..47
FT /accession="MIMAT0000668"
FT /product="mmu-miR-211-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT /similarity="MI0001377"
FT miRNA 63..83
FT /accession="MIMAT0017059"
FT /product="mmu-miR-211-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 106 BP; 18 A; 29 C; 32 G; 0 T; 27 other;
cugcuuggac cugugaccug ugggcuuccc uuugucaucc uuugccuagg ccucugagug 60
aggcaaggac agcaaagggg ggcucagugg ucaccucuac ugcaga 106
//
ID mmu-mir-221 standard; RNA; MMU; 95 BP.
XX
AC MI0000709;
XX
DE Mus musculus miR-221 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619066; Mir221.
DR ENTREZGENE; 723827; Mir221.
XX
CC Mouse mir-221 is predicted [2] based on homology to a reported miR from
CC human (MIR:MI0000298) [1]. Its expression was later verified by cloning
CC [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..45
FT /accession="MIMAT0017060"
FT /product="mmu-miR-221-5p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
FT miRNA 60..82
FT /accession="MIMAT0000669"
FT /product="mmu-miR-221-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4,6]"
FT /similarity="MI0000961"
XX
SQ Sequence 95 BP; 21 A; 19 C; 26 G; 0 T; 29 other;
auccaggucu ggggcaugaa ccuggcauac aauguagauu ucuguguuug uuaggcaaca 60
gcuacauugu cugcuggguu ucaggcuacc uggaa 95
//
ID mmu-mir-222 standard; RNA; MMU; 79 BP.
XX
AC MI0000710;
XX
DE Mus musculus miR-222 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619118; Mir222.
DR ENTREZGENE; 723828; Mir222.
XX
CC Mouse mir-222 is predicted [2] based on homology to a reported miR from
CC human (MIR:MI0000299) [1]. Its expression was later verified in mouse by
CC cloning [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0017061"
FT /product="mmu-miR-222-5p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
FT miRNA 49..71
FT /accession="MIMAT0000670"
FT /product="mmu-miR-222-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4,6]"
FT /similarity="MI0000299"
XX
SQ Sequence 79 BP; 13 A; 21 C; 22 G; 0 T; 23 other;
cccucagugg cucaguagcc aguguagauc cugucuuugg uaaucagcag cuacaucugg 60
cuacuggguc ucugguggc 79
//
ID mmu-mir-224 standard; RNA; MMU; 82 BP.
XX
AC MI0000711;
XX
DE Mus musculus miR-224 stem-loop
XX
RN [1]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
RC Erratum RNA 9:631-632(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619129; Mir224.
DR ENTREZGENE; 723894; Mir224.
XX
CC Mouse mir-224 is predicted [2] based on homology to a cloned miR from
CC human (MIR:MI0000301) [1]. Its expression was later verified by cloning
CC [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..28
FT /accession="MIMAT0000671"
FT /product="mmu-miR-224-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0000301"
FT miRNA 55..76
FT /accession="MIMAT0017062"
FT /product="mmu-miR-224-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 82 BP; 18 A; 15 C; 21 G; 0 T; 28 other;
gggcuuuuaa gucacuagug guuccguuua guagaugguu ugugcauugu uucaaaaugg 60
ugcccuagug acuacaaagc cc 82
//
ID mmu-mir-29b-2 standard; RNA; MMU; 81 BP.
XX
AC MI0000712;
XX
DE Mus musculus miR-29b-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [8]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00074; mir-29.
DR MGI; 3619047; Mir29b-2.
DR ENTREZGENE; 723963; Mir29b-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..35
FT /accession="MIMAT0017063"
FT /product="mmu-miR-29b-2-5p"
FT /evidence=experimental
FT /experiment="454 [7], Illumina [8]"
FT miRNA 52..74
FT /accession="MIMAT0000127"
FT /product="mmu-miR-29b-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3,5], Illumina [6,8]"
XX
SQ Sequence 81 BP; 17 A; 14 C; 18 G; 0 T; 32 other;
cuucuggaag cugguuucac augguggcuu agauuuuucc aucuuuguau cuagcaccau 60
uugaaaucag uguuuuagga g 81
//
ID mmu-mir-199a-2 standard; RNA; MMU; 110 BP.
XX
AC MI0000713;
XX
DE Mus musculus miR-199a-2 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [4]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618742; Mir199a-2.
DR ENTREZGENE; 723821; Mir199a-2.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [5]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..53
FT /accession="MIMAT0000229"
FT /product="mmu-miR-199a-5p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
FT /similarity="MI0000281"
FT miRNA 70..91
FT /accession="MIMAT0000230"
FT /product="mmu-miR-199a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,5], Illumina [6-7]"
XX
SQ Sequence 110 BP; 24 A; 29 C; 31 G; 0 T; 26 other;
uggaagcuuc aggagauccu gcuccgucgc cccaguguuc agacuaccug uucaggacaa 60
ugccguugua caguagucug cacauugguu agacugggca agggccagca 110
//
ID mmu-mir-199b standard; RNA; MMU; 110 BP.
XX
AC MI0000714;
XX
DE Mus musculus miR-199b stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676865; Mir199b.
DR ENTREZGENE; 387239; Mir199b.
XX
CC Mouse miR-199b is predicted based on homology with the previously
CC identified human miR-199b (MIR:MI0000282) [1,2]. Landgraf et al. later
CC showed that the 3' product is the predominant one [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..48
FT /accession="MIMAT0000672"
FT /product="mmu-miR-199b-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0000282"
FT miRNA 65..86
FT /accession="MIMAT0004667"
FT /product="mmu-miR-199b-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 110 BP; 23 A; 31 C; 27 G; 0 T; 29 other;
ccagaggaua ccuccacucc gucuacccag uguuuagacu accuguucag gacucccaaa 60
uuguacagua gucugcacau ugguuaggcu gggcuggguu agacccucgg 110
//
ID mmu-mir-135a-2 standard; RNA; MMU; 100 BP.
XX
AC MI0000715;
XX
DE Mus musculus miR-135a-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618729; Mir135a-2.
DR ENTREZGENE; 723955; Mir135a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0000147"
FT /product="mmu-miR-135a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Illumina [4-5]"
FT miRNA 62..82
FT /accession="MIMAT0017064"
FT /product="mmu-miR-135a-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 100 BP; 32 A; 14 C; 19 G; 0 T; 35 other;
agauaaauuc acucuagugc uuuauggcuu uuuauuccua ugugaucgua auaaagucuc 60
auguagggau ggaagccaug aaauacauug ugaaaauuca 100
//
ID mmu-mir-124-1 standard; RNA; MMU; 85 BP.
XX
AC MI0000716;
XX
DE Mus musculus miR-124-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676807; Mirn124a-1.
DR ENTREZGENE; 387233; Mir124a-1.
XX
CC miR-124 was cloned from mouse brain [1] and embryonic stem cells [2] by
CC independent groups. There are 3 predicted precursor hairpin sequences:
CC mir-124-1 (MIR:MI0000716) on chromosome 14, mir-124-2 (MIR:MI0000717) on
CC chromosome 3, and mir-124-3 (previously known as miR-124 here,
CC MIR:MI0000150) on chromosome 2. All have closely related predicted human
CC homologues (MIR:MI0000443, MIR:MI0000444 and MIR:MI0000445).
CC Lagos-Quintana et al. also report a mature miRNA sequence miR-124b, with a
CC G insertion at position 12 [1]. miR-124b is not found in either the mouse
CC or human genome assemblies.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0004527"
FT /product="mmu-miR-124-5p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
FT miRNA 53..72
FT /accession="MIMAT0000134"
FT /product="mmu-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
XX
SQ Sequence 85 BP; 21 A; 21 C; 22 G; 0 T; 21 other;
aggccucucu cuccguguuc acagcggacc uugauuuaaa uguccauaca auuaaggcac 60
gcggugaaug ccaagaaugg ggcug 85
//
ID mmu-mir-124-2 standard; RNA; MMU; 109 BP.
XX
AC MI0000717;
XX
DE Mus musculus miR-124-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618700; Mirn124a-2.
DR ENTREZGENE; 723950; Mir124a-2.
XX
CC miR-124 was cloned from mouse brain [1] and embryonic stem cells [2] by
CC independent groups. There are 3 predicted precursor hairpin sequences:
CC mir-124-1 (MIR:MI0000716) on chromosome 14, mir-124-2 (MIR:MI0000717) on
CC chromosome 3, and mir-124-3 (previously known as miR-124 here,
CC MIR:MI0000150) on chromosome 2. All have closely related predicted human
CC homologues (MIR:MI0000443, MIR:MI0000444 and MIR:MI0000445).
CC Lagos-Quintana et al. also report a mature miRNA sequence miR-124b, with a
CC G insertion at position 12 [1]. miR-124b is not found in either the mouse
CC or human genome assemblies.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0004527"
FT /product="mmu-miR-124-5p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
FT miRNA 62..81
FT /accession="MIMAT0000134"
FT /product="mmu-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5-6]"
XX
SQ Sequence 109 BP; 30 A; 27 C; 27 G; 0 T; 25 other;
aucaagauca gagacucugc ucuccguguu cacagcggac cuugauuuaa ugucauacaa 60
uuaaggcacg cggugaaugc caagagcgga gccuacggcu gcacuugaa 109
//
ID mmu-mir-19b-1 standard; RNA; MMU; 87 BP.
XX
AC MI0000718;
XX
DE Mus musculus miR-19b-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [4]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [8]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629917; Mir19b-1.
DR ENTREZGENE; 751527; Mir19b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0017065"
FT /product="mmu-miR-19b-1-5p"
FT /evidence=experimental
FT /experiment="454 [7], Illumina [8]"
FT miRNA 54..76
FT /accession="MIMAT0000513"
FT /product="mmu-miR-19b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3,5], Northern [2], Illumina [6,8]"
XX
SQ Sequence 87 BP; 19 A; 16 C; 22 G; 0 T; 30 other;
cacuggucua ugguuaguuu ugcagguuug cauccagcug uauaauauuc ugcugugcaa 60
auccaugcaa aacugacugu gguggug 87
//
ID mmu-mir-92a-1 standard; RNA; MMU; 80 BP.
XX
AC MI0000719;
XX
DE Mus musculus miR-92a-1 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629918; Mirn92-1.
DR ENTREZGENE; 751549; Mir92-1.
XX
CC The predominant miR-92 form cloned by Landgraf et al. has a additional 3'
CC U residue, which is compatible with this precursor sequence, but not with
CC that of mir-92-2 (MIR:MI0000580) [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0017066"
FT /product="mmu-miR-92a-1-5p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
FT miRNA 50..70
FT /accession="MIMAT0000539"
FT /product="mmu-miR-92a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], Northern [1], Illumina [5,7]"
XX
SQ Sequence 80 BP; 10 A; 16 C; 22 G; 0 T; 32 other;
cuuucuacac agguugggau uugucgcaau gcuguguuuc ucuguauggu auugcacuug 60
ucccggccug uugaguuugg 80
//
ID mmu-mir-9-1 standard; RNA; MMU; 89 BP.
XX
AC MI0000720;
XX
DE Mus musculus miR-9-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676911; Mir9-1.
DR ENTREZGENE; 387133; Mir9-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000142"
FT /product="mmu-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4], Illumina [5-6]"
FT miRNA 55..76
FT /accession="MIMAT0000143"
FT /product="mmu-miR-9-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4], Illumina [5-6]"
XX
SQ Sequence 89 BP; 25 A; 13 C; 23 G; 0 T; 28 other;
cgggguuggu uguuaucuuu gguuaucuag cuguaugagu gguguggagu cuucauaaag 60
cuagauaacc gaaaguaaaa auaacccca 89
//
ID mmu-mir-9-3 standard; RNA; MMU; 90 BP.
XX
AC MI0000721;
XX
DE Mus musculus miR-9-3 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619443; Mir9-3.
DR ENTREZGENE; 723968; Mir9-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000142"
FT /product="mmu-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4], Illumina [5-6]"
FT miRNA 55..76
FT /accession="MIMAT0000143"
FT /product="mmu-miR-9-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4], Illumina [5-6]"
XX
SQ Sequence 90 BP; 25 A; 20 C; 21 G; 0 T; 24 other;
ggaggcccgu uucucucuuu gguuaucuag cuguaugagu gccacagagc cgucauaaag 60
cuagauaacc gaaaguagaa augacucuca 90
//
ID mmu-mir-138-1 standard; RNA; MMU; 99 BP.
XX
AC MI0000722;
XX
DE Mus musculus miR-138-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [4]
RX PUBMED; 16738409.
RA Obernosterer G, Leuschner PJ, Alenius M, Martinez J;
RT "Post-transcriptional regulation of microRNA expression";
RL RNA. 12:1161-1167(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676823; Mir138-1.
DR ENTREZGENE; 387156; Mir138-1.
XX
CC Mouse miR-138 was cloned from mouse brain tissue in [1]. There are 2
CC predicted hairpin precursor structures in the mouse genome, each has a
CC closely related human homologue [2]. mir-138-1 (MIR:MI0000722) is found
CC on mouse chromosome 8, and mir-138-2 (MIR:MI0000164, previously named
CC mir-138 here) on chromosome 9. Kim et al. and Obernosterer et al.
CC independently show that the mature product is a 23mer [3,4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0000150"
FT /product="mmu-miR-138-5p"
FT /evidence=experimental
FT /experiment="cloned [1,5], Illumina [6-7]"
FT miRNA 61..82
FT /accession="MIMAT0004668"
FT /product="mmu-miR-138-1-3p"
FT /evidence=experimental
FT /experiment="cloned [5], Illumina [6-7]"
XX
SQ Sequence 99 BP; 24 A; 26 C; 28 G; 0 T; 21 other;
cucuagcaug guguuguggg acagcuggug uugugaauca ggccguugcc aaucagagaa 60
cggcuacuuc acaacaccag ggccacacug cacugcaag 99
//
ID mmu-mir-181b-1 standard; RNA; MMU; 80 BP.
XX
AC MI0000723;
XX
DE Mus musculus miR-181b-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618735; Mir181b-1.
DR ENTREZGENE; 723890; Mir181b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..35
FT /accession="MIMAT0000673"
FT /product="mmu-miR-181b-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4], Illumina [5,7]"
FT /similarity="MI0001366"
FT miRNA 52..72
FT /accession="MIMAT0017067"
FT /product="mmu-miR-181b-1-3p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
XX
SQ Sequence 80 BP; 24 A; 16 C; 20 G; 0 T; 20 other;
aggucacaau caacauucau ugcugucggu ggguugaacu guguagaaaa gcucacugaa 60
caaugaaugc aacuguggcc 80
//
ID mmu-mir-181c standard; RNA; MMU; 89 BP.
XX
AC MI0000724;
XX
DE Mus musculus miR-181c stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618737; Mir181c.
DR ENTREZGENE; 723819; Mir181c.
XX
CC Mouse miR-181c was predicted by computational methods using conservation
CC with human and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish and independently in mouse [2,3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000674"
FT /product="mmu-miR-181c-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [4,6]"
FT /similarity="MI0001380"
FT miRNA 56..77
FT /accession="MIMAT0017068"
FT /product="mmu-miR-181c-3p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
XX
SQ Sequence 89 BP; 20 A; 22 C; 30 G; 0 T; 17 other;
gccaaggguu ugggggaaca uucaaccugu cggugaguuu gggcagcuca gacaaaccau 60
cgaccguuga guggaccccg aggccugga 89
//
ID mmu-mir-125b-1 standard; RNA; MMU; 77 BP.
XX
AC MI0000725;
XX
DE Mus musculus miR-125b-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00052; lin-4.
DR MGI; 2676810; Mir125b-1.
DR ENTREZGENE; 387236; Mir125b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000136"
FT /product="mmu-miR-125b-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], Illumina [5-6]"
FT miRNA 55..76
FT /accession="MIMAT0004669"
FT /product="mmu-miR-125b-1-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 77 BP; 13 A; 22 C; 19 G; 0 T; 23 other;
ugcgcucccc ucagucccug agacccuaac uugugauguu uaccguuuaa auccacgggu 60
uaggcucuug ggagcug 77
//
ID mmu-mir-128-2 standard; RNA; MMU; 76 BP.
XX
AC MI0000726;
XX
DE Mus musculus miR-128-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618709; Mir128-2.
DR ENTREZGENE; 723815; Mir128-2.
XX
CC The most commonly cloned mature sequences derived from the previously
CC annotated mir-128a and mir-128b were shown by Landgraf et al to be
CC identical [3]. The sequences are therefore renamed mir-128-1 and
CC mir-128-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0017069"
FT /product="mmu-miR-128-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 48..68
FT /accession="MIMAT0000140"
FT /product="mmu-miR-128-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT /similarity="MI0000901"
XX
SQ Sequence 76 BP; 17 A; 17 C; 26 G; 0 T; 16 other;
cagugggaag gggggccgau gcacuguaag agagugagua gcaggucuca cagugaaccg 60
gucucuuucc cuacug 76
//
ID hsa-mir-128-2 standard; RNA; HSA; 84 BP.
XX
AC MI0000727;
XX
DE Homo sapiens miR-128-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-128b; hsa-miR-128b.
DR HGNC; 31511; MIR128-2.
DR ENTREZGENE; 406916; MIR128-2.
XX
CC The most commonly cloned mature sequences derived from the previously
CC annotated mir-128a and mir-128b were shown by Landgraf et al to be
CC identical [3]. The sequences are therefore renamed mir-128-1 and
CC mir-128-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0031095"
FT /product="hsa-miR-128-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 52..72
FT /accession="MIMAT0000424"
FT /product="hsa-miR-128-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4]"
FT /similarity="MI0000901"
XX
SQ Sequence 84 BP; 17 A; 19 C; 28 G; 0 T; 20 other;
ugugcagugg gaaggggggc cgauacacug uacgagagug aguagcaggu cucacaguga 60
accggucucu uucccuacug uguc 84
//
ID mmu-mir-7a-1 standard; RNA; MMU; 108 BP.
XX
AC MI0000728;
XX
DE Mus musculus miR-7a-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00053; mir-7.
DR MGI; 3619436; Mirn7-1.
DR ENTREZGENE; 723902; Mir7-1.
XX
CC miR-7a (previously named miR-7) was predicted by computational methods
CC using conservation between mouse, human and Fugu rubripes sequences [1].
CC Expression of the excised miR has been validated in zebrafish, and later
CC independently verified in mouse [2]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [4]. The ends of the miRNA may be offset with respect to previous
CC annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0000677"
FT /product="mmu-miR-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [5-6]"
FT /similarity="MI0000641"
FT miRNA 66..87
FT /accession="MIMAT0004670"
FT /product="mmu-miR-7a-1-3p"
FT /evidence=experimental
FT /experiment="cloned [4], Illumina [5-6]"
XX
SQ Sequence 108 BP; 30 A; 21 C; 24 G; 0 T; 33 other;
uuggauguug gccuaguucu guguggaaga cuagugauuu uguuguuuuu agauaacuaa 60
aacgacaaca aaucacaguc ugccauaugg cacaggccac cucuacag 108
//
ID mmu-mir-7a-2 standard; RNA; MMU; 97 BP.
XX
AC MI0000729;
XX
DE Mus musculus miR-7a-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00053; mir-7.
DR MGI; 3619437; Mirn7-2.
DR ENTREZGENE; 723884; Mir7-2.
XX
CC miR-7a (previously named miR-7) was predicted by computational methods
CC using conservation between mouse, human and Fugu rubripes sequences [1].
CC Expression of the excised miR has been validated in zebrafish, and later
CC independently verified in mouse [2]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [4]. The ends of the miRNA may be offset with respect to previous
CC annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0000677"
FT /product="mmu-miR-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [5-6]"
FT /similarity="MI0001361"
FT miRNA 59..80
FT /accession="MIMAT0017070"
FT /product="mmu-miR-7a-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
XX
SQ Sequence 97 BP; 18 A; 24 C; 25 G; 0 T; 30 other;
ggucgggcca gccccguuug gaagacuagu gauuuuguug uugugucucu guauccaaca 60
acaaguccca gucugccaca uggugcuggu cauuuca 97
//
ID mmu-mir-7b standard; RNA; MMU; 111 BP.
XX
AC MI0000730;
XX
DE Mus musculus miR-7b stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR RFAM; RF00053; mir-7.
DR MGI; 3619435; Mir7b.
DR ENTREZGENE; 723883; Mir7b.
XX
CC miR-7 was predicted by computational methods using conservation between
CC mouse, human and Fugu rubripes sequences [1]. Expression of the excised
CC miR has been validated in zebrafish, and the 5' end mapped by PCR. This
CC sequence represents the mouse homologue of human mir-7-3 -- the derived
CC mature form differs at a single position from that expressed from mir-7-1
CC (MIR:MI0000728) and mir-7-2 (MIR:MI0000729) in mouse, and mir-7-1
CC (MIR:MI0000263), mir-7-2 (MIR:MI0000264) and mir-7-3 (MIR:MI0000265) in
CC human.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..53
FT /accession="MIMAT0000678"
FT /product="mmu-miR-7b-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0000837"
FT miRNA 68..89
FT /accession="MIMAT0017071"
FT /product="mmu-miR-7b-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 111 BP; 28 A; 23 C; 29 G; 0 T; 31 other;
aggagcggag uacgugagcc agugcuaugu ggaagacuug ugauuuuguu guucugauau 60
gauaugacaa caagucacag ccagccucau agcguggacu ccuaucaccu u 111
//
ID mmu-mir-217 standard; RNA; MMU; 108 BP.
XX
AC MI0000731;
XX
DE Mus musculus miR-217 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676893; Mir217.
DR ENTREZGENE; 387213; Mir217.
XX
CC This miRNA was predicted by computational methods using conservation in
CC with human, mouse and Fugu rubripes [1]. Expression of the excised miR
CC has been validated in zebrafish, and the ends mapped by cloning. The
CC mature mouse and human (MIR:MI0000293) sequences differ at a single
CC position [2]. The mature sequence shown here represents the most commonly
CC cloned form from large-scale cloning studies in mouse [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 34..56
FT /accession="MIMAT0000679"
FT /product="mmu-miR-217-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4,6]"
FT /similarity="MI0001383"
FT miRNA 71..93
FT /accession="MIMAT0017072"
FT /product="mmu-miR-217-3p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
XX
SQ Sequence 108 BP; 35 A; 24 C; 17 G; 0 T; 32 other;
aaacauaguc auuacaguuu uugauguugc agauacugca ucaggaacug acuggauaag 60
acuuaauccc caucaguucc uaaugcauug ccuucagcau cuaaacaa 108
//
ID hsa-mir-194-2 standard; RNA; HSA; 85 BP.
XX
AC MI0000732;
XX
DE Homo sapiens miR-194-2 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-194; hsa-miR-194.
DR HGNC; 31565; MIR194-2.
DR ENTREZGENE; 406970; MIR194-2.
XX
CC This miRNA sequence was predicted based on homology to a verified miRNA
CC from mouse [1]. Michael et al. subsequently verified expression of
CC miR-194 in human [2]. Two putative pairs of orthologous hairpin
CC precursors structures are found in mouse (mir-194-1 (MIR:MI0000236) on
CC chromosome 1, and mir-194-2 (MIR:MI0000733) on chromosome 19) and human
CC (mir-194-1 (MIR:MI0000488) on chromosome 1, and mir-194-2 (MIR:MI0000732)
CC on chromosome 11).
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000460"
FT /product="hsa-miR-194-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT miRNA 51..72
FT /accession="MIMAT0004671"
FT /product="hsa-miR-194-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 85 BP; 13 A; 25 C; 28 G; 0 T; 19 other;
ugguucccgc ccccuguaac agcaacucca uguggaagug cccacugguu ccaguggggc 60
ugcuguuauc uggggcgagg gccag 85
//
ID mmu-mir-194-2 standard; RNA; MMU; 86 BP.
XX
AC MI0000733;
XX
DE Mus musculus miR-194-2 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618738; Mir194-2.
DR ENTREZGENE; 723957; Mir194-2.
XX
CC Lagos-Quintana cloned miR-194 from mouse kidney tissue [1]. Michael et
CC al. subsequently verified expression of miR-194 in human [2]. Two
CC putative pairs of orthologous hairpin precursors structures are found in
CC mouse (mir-194-1 (MIR:MI0000236) on chromosome 1, and mir-194-2
CC (MIR:MI0000733) on chromosome 19) and human (mir-194-1 (MIR:MI0000488) on
CC chromosome 1, and mir-194-2 (MIR:MI0000732) on chromosome 11).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000224"
FT /product="mmu-miR-194-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Illumina [4-5]"
FT miRNA 52..73
FT /accession="MIMAT0017073"
FT /product="mmu-miR-194-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 86 BP; 13 A; 24 C; 28 G; 0 T; 21 other;
guggcuccca cccucuguaa cagcaacucc auguggaagu gcccacuggu uccagugggg 60
cugcuguuau cugggguggc ggcuag 86
//
ID hsa-mir-106b standard; RNA; HSA; 82 BP.
XX
AC MI0000734;
XX
DE Homo sapiens miR-106b stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [4]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [7]
RX PUBMED; 18230126.
RA Afanasyeva EA, Hotz-Wagenblatt A, Glatting KH, Westermann F;
RT "New miRNAs cloned from neuroblastoma";
RL BMC Genomics. 9:52(2008).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-106b; hsa-miR-106b.
DR HGNC; 31495; MIR106B.
DR ENTREZGENE; 406900; MIR106B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0000680"
FT /product="hsa-miR-106b-5p"
FT /evidence=experimental
FT /experiment="cloned [3-6]"
FT /similarity="MI0000407"
FT miRNA 52..73
FT /accession="MIMAT0004672"
FT /product="hsa-miR-106b-3p"
FT /evidence=experimental
FT /experiment="cloned [5-7], Northern [7]"
XX
SQ Sequence 82 BP; 13 A; 24 C; 26 G; 0 T; 19 other;
ccugccgggg cuaaagugcu gacagugcag auaguggucc ucuccgugcu accgcacugu 60
ggguacuugc ugcuccagca gg 82
//
ID hsa-mir-29c standard; RNA; HSA; 88 BP.
XX
AC MI0000735;
XX
DE Homo sapiens miR-29c stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12554860.
RA Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G;
RT "Numerous microRNPs in neuronal cells containing novel microRNAs";
RL RNA. 9:180-186(2003).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-29c; hsa-miR-29c.
DR HGNC; 31621; MIR29C.
DR ENTREZGENE; 407026; MIR29C.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0004673"
FT /product="hsa-miR-29c-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 54..75
FT /accession="MIMAT0000681"
FT /product="hsa-miR-29c-3p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
XX
SQ Sequence 88 BP; 18 A; 17 C; 22 G; 0 T; 31 other;
aucucuuaca caggcugacc gauuucuccu gguguucaga gucuguuuuu gucuagcacc 60
auuugaaauc gguuaugaug uaggggga 88
//
ID hsa-mir-30c-1 standard; RNA; HSA; 89 BP.
XX
AC MI0000736;
XX
DE Homo sapiens miR-30c-1 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-30c; hsa-miR-30c.
DR HGNC; 31626; MIR30C1.
DR ENTREZGENE; 407031; MIR30C1.
XX
CC miR-30c was cloned from mouse heart and brain tissues by Lagos-Quintana et
CC al. [1]. Two human hairpin precursor sequences are predicted based on
CC homology with the mouse sequences, on chromosomes 1 (MIR:MI0000736) and 6
CC (MIR:MI0000254) [3]. Expression of miR-30c was later validated in human
CC HL-60 leukemia cells [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0000244"
FT /product="hsa-miR-30c-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4-6]"
FT /similarity="MI0000547"
FT miRNA 56..77
FT /accession="MIMAT0004674"
FT /product="hsa-miR-30c-1-3p"
FT /evidence=experimental
FT /experiment="cloned [5]"
XX
SQ Sequence 89 BP; 18 A; 20 C; 25 G; 0 T; 26 other;
accaugcugu agugugugua aacauccuac acucucagcu gugagcucaa gguggcuggg 60
agaggguugu uuacuccuuc ugccaugga 89
//
ID hsa-mir-200a standard; RNA; HSA; 90 BP.
XX
AC MI0000737;
XX
DE Homo sapiens miR-200a stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-200a; hsa-miR-200a.
DR HGNC; 31578; MIR200A.
DR ENTREZGENE; 406983; MIR200A.
XX
CC miR-200a was cloned from mouse kidney tissue [1], and expression later
CC confirmed by cloning in human [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001620"
FT /product="hsa-miR-200a-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT miRNA 54..75
FT /accession="MIMAT0000682"
FT /product="hsa-miR-200a-3p"
FT /evidence=experimental
FT /experiment="cloned [3-5]"
FT /similarity="MI0000554"
XX
SQ Sequence 90 BP; 18 A; 27 C; 23 G; 0 T; 22 other;
ccgggccccu gugagcaucu uaccggacag ugcuggauuu cccagcuuga cucuaacacu 60
gucugguaac gauguucaaa ggugacccgc 90
//
ID hsa-mir-302a standard; RNA; HSA; 69 BP.
XX
AC MI0000738;
XX
DE Homo sapiens miR-302a stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-302a; hsa-miR-302a.
DR TARGETS:PICTAR-VERT; hsa-miR-302a*; hsa-miR-302a*.
DR HGNC; 31623; MIR302A.
DR ENTREZGENE; 407028; MIR302A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0000683"
FT /product="hsa-miR-302a-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Northern [2]"
FT miRNA 44..66
FT /accession="MIMAT0000684"
FT /product="hsa-miR-302a-3p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Northern [2]"
XX
SQ Sequence 69 BP; 19 A; 12 C; 16 G; 0 T; 22 other;
ccaccacuua aacguggaug uacuugcuuu gaaacuaaag aaguaagugc uuccauguuu 60
uggugaugg 69
//
ID hsa-mir-101-2 standard; RNA; HSA; 79 BP.
XX
AC MI0000739;
XX
DE Homo sapiens miR-101-2 stem-loop
XX
RN [1]
RX MEDLINE; 21912064.
RX PUBMED; 11914277.
RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
RA Rappsilber J, Mann M, Dreyfuss G;
RT "miRNPs: a novel class of ribonucleoproteins containing numerous
RT microRNAs";
RL Genes Dev. 16:720-728(2002).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-101; hsa-miR-101.
DR HGNC; 31489; MIR101-2.
DR ENTREZGENE; 406894; MIR101-2.
XX
CC Reference [1] reports two miR-101 precursor hairpin structures in human,
CC on chromosome 1 (MIR:MI0000103) and 9 (MIR:MI0000739, named
CC mir-101-precursor-9 in [1]). The mature sequence shown here represents
CC the most commonly cloned form from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0037312"
FT /product="hsa-miR-101-2-5p"
FT /evidence=not_experimental
FT miRNA 49..69
FT /accession="MIMAT0000099"
FT /product="hsa-miR-101-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4]"
XX
SQ Sequence 79 BP; 20 A; 12 C; 20 G; 0 T; 27 other;
acuguccuuu uucgguuauc augguaccga ugcuguauau cugaaaggua caguacugug 60
auaacugaag aaugguggu 79
//
ID hsa-mir-219a-2 standard; RNA; HSA; 97 BP.
XX
AC MI0000740;
XX
DE Homo sapiens miR-219a-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-219; hsa-miR-219.
DR HGNC; 31598; MIR219-2.
DR ENTREZGENE; 407003; MIR219-2.
XX
CC This human miRNA was predicted by computational methods using conservation
CC with mouse and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the 5' end mapped by PCR [2]. The
CC mature products were later verified in human [3]. Two hairpin precursor
CC structures are predicted, mir-219-1 on chromosome 6 (MIR:MI0000296) and
CC mir-219-2 on chromosome 9 (MIR:MI0000740) [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0000276"
FT /product="hsa-miR-219a-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0001385"
FT miRNA 62..83
FT /accession="MIMAT0004675"
FT /product="hsa-miR-219a-2-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 97 BP; 19 A; 26 C; 29 G; 0 T; 23 other;
acucaggggc uucgccacug auuguccaaa cgcaauucuu guacgagucu gcggccaacc 60
gagaauugug gcuggacauc uguggcugag cuccggg 97
//
ID mmu-mir-219a-2 standard; RNA; MMU; 97 BP.
XX
AC MI0000741;
XX
DE Mus musculus miR-219a-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618754; Mir219-2.
DR ENTREZGENE; 723904; Mir219-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0000664"
FT /product="mmu-miR-219a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3-4]"
FT /similarity="MI0001385"
FT miRNA 62..83
FT /accession="MIMAT0022841"
FT /product="mmu-miR-219a-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 97 BP; 19 A; 25 C; 29 G; 0 T; 24 other;
acucaggggc uucgccacug auuguccaaa cgcaauucuu guacgagucu gcggccaacc 60
gagaauugug gcuggacauc ugugguugag cuccggg 97
//
ID hsa-mir-34b standard; RNA; HSA; 84 BP.
XX
AC MI0000742;
XX
DE Homo sapiens miR-34b stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-34b; hsa-miR-34b.
DR HGNC; 31636; MIR34B.
DR ENTREZGENE; 407041; MIR34B.
XX
CC Houbaviy et al. cloned 3 closely related sequences from mouse embryonic
CC stem cells [1], and named them miR-34a, miR-34b and miR-172. These names
CC have been remapped to miR-34c (MIR:MI0000403), miR-34b (MIR:MI0000404) and
CC miR-34a (MIR:MI0000584) to clarify homology with human sequences. The
CC predominant mature miRNA in human is expressed from the 3' arm (in
CC contrast to previous annotation) [2]. Both arms express mature products
CC in mouse.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0000685"
FT /product="hsa-miR-34b-5p"
FT /evidence=not_experimental
FT /similarity="MI0000404"
FT miRNA 50..71
FT /accession="MIMAT0004676"
FT /product="hsa-miR-34b-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 84 BP; 21 A; 19 C; 20 G; 0 T; 24 other;
gugcucgguu uguaggcagu gucauuagcu gauuguacug uggugguuac aaucacuaac 60
uccacugcca ucaaaacaag gcac 84
//
ID hsa-mir-34c standard; RNA; HSA; 77 BP.
XX
AC MI0000743;
XX
DE Homo sapiens miR-34c stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-34c; hsa-miR-34c.
DR HGNC; 31637; MIR34C.
DR ENTREZGENE; 407042; MIR34C.
XX
CC Houbaviy et al. cloned 3 closely related sequences from mouse embryonic
CC stem cells [1], and named them miR-34a, miR-34b and miR-172. These names
CC have been remapped to miR-34c (MIR:MI0000403), miR-34b (MIR:MI0000404) and
CC miR-34a (MIR:MI0000584) to clarify homology with human sequences.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0000686"
FT /product="hsa-miR-34c-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000403"
FT miRNA 46..67
FT /accession="MIMAT0004677"
FT /product="hsa-miR-34c-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 77 BP; 26 A; 15 C; 16 G; 0 T; 20 other;
agucuaguua cuaggcagug uaguuagcug auugcuaaua guaccaauca cuaaccacac 60
ggccagguaa aaagauu 77
//
ID hsa-mir-299 standard; RNA; HSA; 63 BP.
XX
AC MI0000744;
XX
DE Homo sapiens miR-299 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 31618; MIR299.
DR ENTREZGENE; 407023; MIR299.
XX
CC The sequence from the 5' arm of this miRNA precursor is the predicted
CC human homologue of mouse miR-299, cloned from mouse embryonic stem cells
CC [1,2], later validated in human [4]. Altuvia et al [3] report the cloning
CC of a miRNA sequence from the 3' arm of the same precursor in human.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0002890"
FT /product="hsa-miR-299-5p"
FT /evidence=experimental
FT /experiment="cloned [4]"
FT /similarity="MI0000399"
FT miRNA 39..60
FT /accession="MIMAT0000687"
FT /product="hsa-miR-299-3p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
XX
SQ Sequence 63 BP; 18 A; 11 C; 13 G; 0 T; 21 other;
aagaaauggu uuaccguccc acauacauuu ugaauaugua ugugggaugg uaaaccgcuu 60
cuu 63
//
ID hsa-mir-301a standard; RNA; HSA; 86 BP.
XX
AC MI0000745;
XX
DE Homo sapiens miR-301a stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-301; hsa-miR-301.
DR HGNC; 31622; MIR301A.
DR ENTREZGENE; 407027; MIR301A.
XX
CC This sequence is the predicted human homologue of mouse miR-301, cloned
CC from mouse embryonic stem cells [1,3]. Its expression has also been
CC confirmed in human ES cells [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0022696"
FT /product="hsa-miR-301a-5p"
FT /evidence=not_experimental
FT miRNA 51..73
FT /accession="MIMAT0000688"
FT /product="hsa-miR-301a-3p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Northern [2]"
XX
SQ Sequence 86 BP; 26 A; 18 C; 17 G; 0 T; 25 other;
acugcuaacg aaugcucuga cuuuauugca cuacuguacu uuacagcuag cagugcaaua 60
guauugucaa agcaucugaa agcagg 86
//
ID hsa-mir-99b standard; RNA; HSA; 70 BP.
XX
AC MI0000746;
XX
DE Homo sapiens miR-99b stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-99b; hsa-miR-99b.
DR HGNC; 31651; MIR99B.
DR ENTREZGENE; 407056; MIR99B.
XX
CC This sequence is the predicted human homologue of mouse miR-99b, cloned
CC from mouse brain [1] and embryonic stem cells [2,3]. Its expression was
CC later validated in human [4-6].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000689"
FT /product="hsa-miR-99b-5p"
FT /evidence=experimental
FT /experiment="cloned [4-6]"
FT /similarity="MI0000147"
FT miRNA 45..66
FT /accession="MIMAT0004678"
FT /product="hsa-miR-99b-3p"
FT /evidence=experimental
FT /experiment="cloned [5]"
XX
SQ Sequence 70 BP; 10 A; 26 C; 21 G; 0 T; 13 other;
ggcacccacc cguagaaccg accuugcggg gccuucgccg cacacaagcu cgugucugug 60
gguccguguc 70
//
ID hsa-mir-296 standard; RNA; HSA; 80 BP.
XX
AC MI0000747;
XX
DE Homo sapiens miR-296 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-296; hsa-miR-296.
DR HGNC; 31617; MIR296.
DR ENTREZGENE; 407022; MIR296.
XX
CC This sequence is the predicted human homologue of mouse miR-296 cloned
CC from mouse embryonic stem cells [1,3]. Its expression has also been
CC verified in human ES cells [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0000690"
FT /product="hsa-miR-296-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4-5]"
FT miRNA 48..69
FT /accession="MIMAT0004679"
FT /product="hsa-miR-296-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 80 BP; 13 A; 24 C; 24 G; 0 T; 19 other;
aggacccuuc cagagggccc ccccucaauc cuguugugcc uaauucagag gguugggugg 60
aggcucuccu gaagggcucu 80
//
ID hsa-mir-130b standard; RNA; HSA; 82 BP.
XX
AC MI0000748;
XX
DE Homo sapiens miR-130b stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-130b; hsa-miR-130b.
DR HGNC; 31515; MIR130B.
DR ENTREZGENE; 406920; MIR130B.
XX
CC This sequence is the predicted human homologue of mouse miR-130b cloned
CC from mouse embryonic stem cells [1,2]. Its expression was later verified
CC in human BC-1 cells [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0004680"
FT /product="hsa-miR-130b-5p"
FT /evidence=experimental
FT /experiment="cloned [4-5]"
FT miRNA 51..72
FT /accession="MIMAT0000691"
FT /product="hsa-miR-130b-3p"
FT /evidence=experimental
FT /experiment="cloned [3-5]"
FT /similarity="MI0000408"
XX
SQ Sequence 82 BP; 17 A; 23 C; 24 G; 0 T; 18 other;
ggccugcccg acacucuuuc ccuguugcac uacuauaggc cgcugggaag cagugcaaug 60
augaaagggc aucggucagg uc 82
//
ID hsa-mir-30e standard; RNA; HSA; 92 BP.
XX
AC MI0000749;
XX
DE Homo sapiens miR-30e stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [3]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [4]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 31629; MIR30E.
DR ENTREZGENE; 407034; MIR30E.
XX
CC This sequence is the predicted human homologue of mouse miR-30e [1,2,4].
CC Mature products from both arms of the precursor (hsa-miR-30e-5p and
CC hsa-miR-30e-3p) were later independently verified in human myelocytic
CC leukemia (HL-60) cells [3]. Landgraf et al. later showed that the 5'
CC product is the predominant one [5]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [5].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000692"
FT /product="hsa-miR-30e-5p"
FT /evidence=experimental
FT /experiment="cloned [3,5-6]"
FT miRNA 59..80
FT /accession="MIMAT0000693"
FT /product="hsa-miR-30e-3p"
FT /evidence=experimental
FT /experiment="cloned [3,5]"
XX
SQ Sequence 92 BP; 20 A; 19 C; 28 G; 0 T; 25 other;
gggcagucuu ugcuacugua aacauccuug acuggaagcu guaagguguu cagaggagcu 60
uucagucgga uguuuacagc ggcaggcugc ca 92
//
ID hsa-mir-26a-2 standard; RNA; HSA; 84 BP.
XX
AC MI0000750;
XX
DE Homo sapiens miR-26a-2 stem-loop
XX
RN [1]
RX PUBMED; 11679670.
RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T;
RT "Identification of novel genes coding for small expressed RNAs";
RL Science. 294:853-858(2001).
XX
RN [2]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [3]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [4]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [5]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [6]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [7]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-26a; hsa-miR-26a.
DR HGNC; 31611; MIR26A2.
DR ENTREZGENE; 407016; MIR26A2.
XX
CC miR-26a was cloned from HeLa cells [1]. Two predicted hairpin precursor
CC sequences are present on chromosome 3 (MIR:MI0000083) and 12
CC (MIR:MI0000750), each with homologues in mouse (MIR:MI0000573 and
CC MIR:MI0000706). The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [6].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000082"
FT /product="hsa-miR-26a-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4-7], Northern [3]"
FT miRNA 52..73
FT /accession="MIMAT0004681"
FT /product="hsa-miR-26a-2-3p"
FT /evidence=experimental
FT /experiment="cloned [6]"
XX
SQ Sequence 84 BP; 15 A; 16 C; 24 G; 0 T; 29 other;
ggcuguggcu ggauucaagu aauccaggau aggcuguuuc caucugugag gccuauucuu 60
gauuacuugu uucuggaggc agcu 84
//
ID cbr-mir-72 standard; RNA; CBR; 123 BP.
XX
AC MI0000751;
XX
DE Caenorhabditis briggsae miR-72 stem-loop
XX
RN [1]
RX PUBMED; 11679671.
RA Lau NC, Lim LP, Weinstein EG, Bartel DP;
RT "An abundant class of tiny RNAs with probable regulatory roles in
RT Caenorhabditis elegans";
RL Science. 294:858-862(2001).
XX
CC This sequence is the predicted C. briggsae homologue of a miRNA cloned
CC from C. elegans (MIR:MI0000043) (Uwe Ohler, pers. comm.).
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..35
FT /accession="MIMAT0000694"
FT /product="cbr-miR-72"
FT /evidence=not_experimental
FT /similarity="MI0000043"
XX
SQ Sequence 123 BP; 33 A; 30 C; 32 G; 0 T; 28 other;
uggacucgcc cgagcuaggc agauguuggc auagcugaau gcaaaucaga aaucgaaauu 60
cgaaaaguuu gaauuucgcg cgcucagcuu cgccacaucg ugccaugcgu aggcuugaga 120
cca 123
//
ID cel-mir-354 standard; RNA; CEL; 110 BP.
XX
AC MI0000753;
XX
DE Caenorhabditis elegans miR-354 stem-loop
XX
RN [1]
RX PUBMED; 15317971.
RA Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB;
RT "Patterns of flanking sequence conservation and a characteristic upstream
RT motif for microRNA gene identification";
RL RNA. 10:1309-1322(2004).
XX
CC This miRNA was predicted by computational analysis of C. elegans and C.
CC briggsae, and expression of the mature microRNA confirmed by PCR
CC amplification, cloning and sequencing. The 5' end of the mature sequence
CC ws mapped by PCR, but the 3' ends have not been experimentally determined.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0031894"
FT /product="cel-miR-354-5p"
FT /evidence=not_experimental
FT miRNA 80..100
FT /accession="MIMAT0000696"
FT /product="cel-miR-354-3p"
FT /evidence=experimental
FT /experiment="cloned [1], PCR [1]"
XX
SQ Sequence 110 BP; 17 A; 30 C; 26 G; 0 T; 37 other;
cagagccgac uaagcaccuu ggugcggcug cagacgggua uccggcucga cguucauaca 60
ucacgacuuc uuuccuuuua ccuuguuugu ugcugcuccu auugguuuug 110
//
ID cel-mir-355 standard; RNA; CEL; 110 BP.
XX
AC MI0000754;
XX
DE Caenorhabditis elegans miR-355 stem-loop
XX
RN [1]
RX PUBMED; 15317971.
RA Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB;
RT "Patterns of flanking sequence conservation and a characteristic upstream
RT motif for microRNA gene identification";
RL RNA. 10:1309-1322(2004).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
CC This miRNA was predicted by computational analysis of C. elegans and C.
CC briggsae, and expression of the mature microRNA confirmed by PCR
CC amplification, cloning and sequencing [1]. The 5' end of the mature
CC sequence was mapped by PCR, and the 3' end confirmed later [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0000697"
FT /product="cel-miR-355-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], PCR [1], Illumina [3]"
FT miRNA 61..82
FT /accession="MIMAT0031895"
FT /product="cel-miR-355-3p"
FT /evidence=not_experimental
XX
SQ Sequence 110 BP; 35 A; 16 C; 21 G; 0 T; 38 other;
aauaauguca agaauugaau gguuuguuuu agccugagcu augagucauc ggaauaugca 60
uagcuucuug cuaaaacaug ccaaucaauc uuaauugacg aaguuuuuga 110
//
ID cel-mir-356a standard; RNA; CEL; 110 BP.
XX
AC MI0000755;
XX
DE Caenorhabditis elegans miR-356 stem-loop
XX
RN [1]
RX PUBMED; 15317971.
RA Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB;
RT "Patterns of flanking sequence conservation and a characteristic upstream
RT motif for microRNA gene identification";
RL RNA. 10:1309-1322(2004).
XX
CC This miRNA was predicted by computational analysis of C. elegans and C.
CC briggsae, and expression of the mature microRNA confirmed by PCR
CC amplification, cloning and sequencing. The 5' end of the mature sequence
CC ws mapped by PCR, but the 3' ends have not been experimentally determined.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..46
FT /accession="MIMAT0000698"
FT /product="cel-miR-356a"
FT /evidence=experimental
FT /experiment="cloned [1], PCR [1]"
XX
SQ Sequence 110 BP; 35 A; 21 C; 23 G; 0 T; 31 other;
uaaaguuucc uugagaacaa ugugguugag caacgcgaac aaaucaucaa uguaaauuuc 60
agcggauucg uuacgacgug ucucaccaca ucguuaguag gauuucagaa 110
//
ID cel-mir-357 standard; RNA; CEL; 110 BP.
XX
AC MI0000756;
XX
DE Caenorhabditis elegans miR-357 stem-loop
XX
RN [1]
RX PUBMED; 15317971.
RA Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB;
RT "Patterns of flanking sequence conservation and a characteristic upstream
RT motif for microRNA gene identification";
RL RNA. 10:1309-1322(2004).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [5]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
CC This miRNA was predicted by computational analysis of C. elegans and C.
CC briggsae, and expression of the mature microRNA confirmed by PCR
CC amplification, cloning and sequencing [1]. The extents of the dominant
CC mature miRNA species are adjusted here in accordance with a large scale
CC cloning and sequencing study [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0020343"
FT /product="cel-miR-357-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 66..87
FT /accession="MIMAT0000699"
FT /product="cel-miR-357-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], PCR [1], Illumina [3,5],
FT CLIPseq [4]"
XX
SQ Sequence 110 BP; 35 A; 28 C; 24 G; 0 T; 23 other;
acgcuguacu acucaccagc ggaucccuac aacgcugcgc auaugcauga acacaaugaa 60
aauguaaaug ccagucguug caggaguucg cauacaguag uaaaaugcgc 110
//
ID cel-mir-358 standard; RNA; CEL; 110 BP.
XX
AC MI0000757;
XX
DE Caenorhabditis elegans miR-358 stem-loop
XX
RN [1]
RX PUBMED; 15317971.
RA Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB;
RT "Patterns of flanking sequence conservation and a characteristic upstream
RT motif for microRNA gene identification";
RL RNA. 10:1309-1322(2004).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
RN [5]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
CC This miRNA was predicted by computational analysis of C. elegans and C.
CC briggsae, and expression of the mature microRNA confirmed by PCR
CC amplification, cloning and sequencing [1]. The extents of the dominant
CC mature miRNA species are adjusted here in accordance with a large scale
CC cloning and sequencing study [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0015120"
FT /product="cel-miR-358-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [4], Illumina [5]"
FT miRNA 67..88
FT /accession="MIMAT0000700"
FT /product="cel-miR-358-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], PCR [1], Illumina [3,5],
FT CLIPseq [4]"
XX
SQ Sequence 110 BP; 27 A; 32 C; 23 G; 0 T; 28 other;
aaacucgcga cggcuggcga ccuggccagg cauuccaacu gucaaacuua caaagcuuuc 60
ucgacaauug guaucccugu caaggucuca auccguucag cgaauucguu 110
//
ID cel-mir-359 standard; RNA; CEL; 110 BP.
XX
AC MI0000758;
XX
DE Caenorhabditis elegans miR-359 stem-loop
XX
RN [1]
RX PUBMED; 15317971.
RA Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB;
RT "Patterns of flanking sequence conservation and a characteristic upstream
RT motif for microRNA gene identification";
RL RNA. 10:1309-1322(2004).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
CC This miRNA was predicted by computational analysis of C. elegans and C.
CC briggsae, and expression of the mature microRNA confirmed by PCR
CC amplification, cloning and sequencing [1]. The extents of the dominant
CC mature miRNA species are adjusted here in accordance with a large scale
CC cloning and sequencing study [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 62..83
FT /accession="MIMAT0000701"
FT /product="cel-miR-359"
FT /evidence=experimental
FT /experiment="cloned [1-2], PCR [1], Illumina [3]"
XX
SQ Sequence 110 BP; 30 A; 23 C; 21 G; 0 T; 36 other;
aaugcuccuu gaaauuucaa ucguuagagu aacacacagu uacacgaccu caucaaucgu 60
gucacugguc uuucucugac gaauugaagu ucuggagaca auuuugguug 110
//
ID cel-mir-360 standard; RNA; CEL; 110 BP.
XX
AC MI0000759;
XX
DE Caenorhabditis elegans miR-360 stem-loop
XX
RN [1]
RX PUBMED; 15317971.
RA Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB;
RT "Patterns of flanking sequence conservation and a characteristic upstream
RT motif for microRNA gene identification";
RL RNA. 10:1309-1322(2004).
XX
RN [2]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [3]
RX PUBMED; 20062054.
RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
RA GW;
RT "Comprehensive discovery of endogenous Argonaute binding sites in
RT Caenorhabditis elegans";
RL Nat Struct Mol Biol. 17:173-179(2010).
XX
CC This miRNA was predicted by computational analysis of C. elegans and C.
CC briggsae, and expression of the mature microRNA confirmed by PCR
CC amplification, cloning and sequencing. The 5' end of the mature sequence
CC ws mapped by PCR, but the 3' ends have not been experimentally determined.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..46
FT /accession="MIMAT0015121"
FT /product="cel-miR-360-5p"
FT /evidence=experimental
FT /experiment="CLIPseq [3]"
FT miRNA 65..85
FT /accession="MIMAT0000702"
FT /product="cel-miR-360-3p"
FT /evidence=experimental
FT /experiment="cloned [1], PCR [1], Illumina [2], CLIPseq
FT [3]"
XX
SQ Sequence 110 BP; 31 A; 21 C; 21 G; 0 T; 37 other;
cauucuguua ggaagcauca auguguugug accguuguua cggucaauuu gcaaauugaa 60
aaaaugaccg uaaucccguu cacaauacau uguucguuuu cuccaaaggu 110
//
ID hsa-mir-361 standard; RNA; HSA; 72 BP.
XX
AC MI0000760;
XX
DE Homo sapiens miR-361 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 18230126.
RA Afanasyeva EA, Hotz-Wagenblatt A, Glatting KH, Westermann F;
RT "New miRNAs cloned from neuroblastoma";
RL BMC Genomics. 9:52(2008).
XX
DR HGNC; 31867; MIR361.
DR ENTREZGENE; 494323; MIR361.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000703"
FT /product="hsa-miR-361-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000761"
FT miRNA 45..67
FT /accession="MIMAT0004682"
FT /product="hsa-miR-361-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Northern [3]"
XX
SQ Sequence 72 BP; 18 A; 15 C; 15 G; 0 T; 24 other;
ggagcuuauc agaaucucca gggguacuuu auaauuucaa aaaguccccc aggugugauu 60
cugauuugcu uc 72
//
ID mmu-mir-361 standard; RNA; MMU; 70 BP.
XX
AC MI0000761;
XX
DE Mus musculus miR-361 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619368; Mir361.
DR ENTREZGENE; 723850; Mir361.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000704"
FT /product="mmu-miR-361-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3,5]"
FT miRNA 43..67
FT /accession="MIMAT0017075"
FT /product="mmu-miR-361-3p"
FT /evidence=experimental
FT /experiment="454 [4], Illumina [5]"
XX
SQ Sequence 70 BP; 17 A; 13 C; 16 G; 0 T; 24 other;
gaagcuuauc agaaucucca gggguacuua guauuugaaa agucccccag gugugauucu 60
gauuuguuuc 70
//
ID hsa-mir-362 standard; RNA; HSA; 65 BP.
XX
AC MI0000762;
XX
DE Homo sapiens miR-362 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32022; MIR362.
DR ENTREZGENE; 574030; MIR362.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..28
FT /accession="MIMAT0000705"
FT /product="hsa-miR-362-5p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2-3]"
FT miRNA 42..63
FT /accession="MIMAT0004683"
FT /product="hsa-miR-362-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 65 BP; 19 A; 14 C; 13 G; 0 T; 19 other;
cuugaauccu uggaaccuag gugugagugc uauuucagug caacacaccu auucaaggau 60
ucaaa 65
//
ID mmu-mir-362 standard; RNA; MMU; 65 BP.
XX
AC MI0000763;
XX
DE Mus musculus miR-362 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619369; Mir362.
DR ENTREZGENE; 723851; Mir362.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..28
FT /accession="MIMAT0000706"
FT /product="mmu-miR-362-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], MPSS [2], Illumina [4-5]"
FT miRNA 42..63
FT /accession="MIMAT0004684"
FT /product="mmu-miR-362-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 65 BP; 18 A; 16 C; 14 G; 0 T; 17 other;
cucgaauccu uggaaccuag gugugaaugc ugcuucagug caacacaccu guucaaggau 60
ucaaa 65
//
ID hsa-mir-363 standard; RNA; HSA; 75 BP.
XX
AC MI0000764;
XX
DE Homo sapiens miR-363 stem-loop
XX
RN [1]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32023; MIR363.
DR ENTREZGENE; 574031; MIR363.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0003385"
FT /product="hsa-miR-363-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT miRNA 50..71
FT /accession="MIMAT0000707"
FT /product="hsa-miR-363-3p"
FT /evidence=experimental
FT /experiment="array-cloned [1], cloned [2-3]"
FT /similarity="MI0002067"
XX
SQ Sequence 75 BP; 22 A; 12 C; 19 G; 0 T; 22 other;
uguugucggg uggaucacga ugcaauuuug augaguauca uaggagaaaa auugcacggu 60
auccaucugu aaacc 75
//
ID mmu-mir-363 standard; RNA; MMU; 75 BP.
XX
AC MI0000765;
XX
DE Mus musculus miR-363 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619370; Mir363.
DR ENTREZGENE; 723852; Mir363.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0017076"
FT /product="mmu-miR-363-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 50..71
FT /accession="MIMAT0000708"
FT /product="mmu-miR-363-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT /similarity="MI0002067"
XX
SQ Sequence 75 BP; 22 A; 11 C; 20 G; 0 T; 22 other;
uguuaucagg uggaacacga ugcaauuuug guugguguaa uaggaggaaa auugcacggu 60
auccaucugu aaacc 75
//
ID hsa-mir-365a standard; RNA; HSA; 87 BP.
XX
AC MI0000767;
XX
DE Homo sapiens miR-365a stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 33692; MIR365-1.
DR ENTREZGENE; 100126355; MIR365-1.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR245.
CC The sequence is unrelated to C. elegans mir-245 (MIR:MI0000321).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0009199"
FT /product="hsa-miR-365a-5p"
FT /evidence=not_experimental
FT miRNA 56..77
FT /accession="MIMAT0000710"
FT /product="hsa-miR-365a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], array-cloned [2]"
XX
SQ Sequence 87 BP; 23 A; 20 C; 19 G; 0 T; 25 other;
accgcaggga aaaugaggga cuuuuggggg cagauguguu uccauuccac uaucauaaug 60
ccccuaaaaa uccuuauugc ucuugca 87
//
ID mmu-mir-365-1 standard; RNA; MMU; 87 BP.
XX
AC MI0000768;
XX
DE Mus musculus miR-365-1 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619371; Mir365-1.
DR ENTREZGENE; 723899; Mir365-1.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR245.
CC The sequence is unrelated to C. elegans mir-245 (MIR:MI0000321).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0017077"
FT /product="mmu-miR-365-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 56..77
FT /accession="MIMAT0000711"
FT /product="mmu-miR-365-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0000767"
XX
SQ Sequence 87 BP; 22 A; 20 C; 20 G; 0 T; 25 other;
accgcaggga aaaugaggga cuuuuggggg cagauguguu uccauuccgc uaucauaaug 60
ccccuaaaaa uccuuauugc ucuugca 87
//
ID hsa-mir-365b standard; RNA; HSA; 111 BP.
XX
AC MI0000769;
XX
DE Homo sapiens miR-365b stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [5]
RX PUBMED; 19144710.
RA Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G;
RT "Identification of novel Epstein-Barr virus microRNA genes from
RT nasopharyngeal carcinomas";
RL J Virol. 83:3333-3341(2009).
XX
DR HGNC; 33693; MIR365-2.
DR ENTREZGENE; 100126356; MIR365-2.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR190.
CC The sequence is unrelated to mammalian mir-190 (MIR:MI0000486).
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..50
FT /accession="MIMAT0022833"
FT /product="hsa-miR-365b-5p"
FT /evidence=experimental
FT /experiment="454 [5]"
FT miRNA 68..89
FT /accession="MIMAT0022834"
FT /product="hsa-miR-365b-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], array-cloned [2]"
XX
SQ Sequence 111 BP; 30 A; 21 C; 29 G; 0 T; 31 other;
agaguguuca aggacagcaa gaaaaaugag ggacuuucag gggcagcugu guuuucugac 60
ucagucauaa ugccccuaaa aauccuuauu guucuugcag ugugcaucgg g 111
//
ID hsa-mir-302b standard; RNA; HSA; 73 BP.
XX
AC MI0000772;
XX
DE Homo sapiens miR-302b stem-loop
XX
RN [1]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-302b; hsa-miR-302b.
DR TARGETS:PICTAR-VERT; hsa-miR-302b*; hsa-miR-302b*.
DR HGNC; 31763; MIR302B.
DR ENTREZGENE; 442894; MIR302B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0000714"
FT /product="hsa-miR-302b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
FT miRNA 47..69
FT /accession="MIMAT0000715"
FT /product="hsa-miR-302b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
XX
SQ Sequence 73 BP; 18 A; 13 C; 15 G; 0 T; 27 other;
gcucccuuca acuuuaacau ggaagugcuu ucugugacuu uaaaaguaag ugcuuccaug 60
uuuuaguagg agu 73
//
ID hsa-mir-302c standard; RNA; HSA; 68 BP.
XX
AC MI0000773;
XX
DE Homo sapiens miR-302c stem-loop
XX
RN [1]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-302c; hsa-miR-302c.
DR TARGETS:PICTAR-VERT; hsa-miR-302c*; hsa-miR-302c*.
DR HGNC; 31764; MIR302C.
DR ENTREZGENE; 442895; MIR302C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0000716"
FT /product="hsa-miR-302c-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
FT miRNA 43..65
FT /accession="MIMAT0000717"
FT /product="hsa-miR-302c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
XX
SQ Sequence 68 BP; 16 A; 12 C; 19 G; 0 T; 21 other;
ccuuugcuuu aacauggggg uaccugcugu gugaaacaaa aguaagugcu uccauguuuc 60
aguggagg 68
//
ID hsa-mir-302d standard; RNA; HSA; 68 BP.
XX
AC MI0000774;
XX
DE Homo sapiens miR-302d stem-loop
XX
RN [1]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-302d; hsa-miR-302d.
DR HGNC; 31765; MIR302D.
DR ENTREZGENE; 442896; MIR302D.
XX
CC Human miR-302a (MIR:MI0000738), miR-302b (MIR:MI0000772), miR-302c
CC (MIR:MI0000773), miR-302d (MIR:MI0000774) and miR-367 (MIR:MI0000775) are
CC clustered on chromosome 4.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0004685"
FT /product="hsa-miR-302d-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 44..66
FT /accession="MIMAT0000718"
FT /product="hsa-miR-302d-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
XX
SQ Sequence 68 BP; 18 A; 13 C; 16 G; 0 T; 21 other;
ccucuacuuu aacauggagg cacuugcugu gacaugacaa aaauaagugc uuccauguuu 60
gagugugg 68
//
ID hsa-mir-367 standard; RNA; HSA; 68 BP.
XX
AC MI0000775;
XX
DE Homo sapiens miR-367 stem-loop
XX
RN [1]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-367; hsa-miR-367.
DR HGNC; 31781; MIR367.
DR ENTREZGENE; 442912; MIR367.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0004686"
FT /product="hsa-miR-367-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 44..65
FT /accession="MIMAT0000719"
FT /product="hsa-miR-367-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1]"
XX
SQ Sequence 68 BP; 20 A; 10 C; 14 G; 0 T; 24 other;
ccauuacugu ugcuaauaug caacucuguu gaauauaaau uggaauugca cuuuagcaau 60
ggugaugg 68
//
ID hsa-mir-376c standard; RNA; HSA; 66 BP.
XX
AC MI0000776;
XX
DE Homo sapiens miR-376c stem-loop
XX
RN [1]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [2]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [3]
RX PUBMED; 17322061.
RA Kawahara Y, Zinshteyn B, Sethupathy P, Iizasa H, Hatzigeorgiou AG,
RA Nishikura K;
RT "Redirection of silencing targets by adenosine-to-inosine editing of
RT miRNAs";
RL Science. 315:1137-1140(2007).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 22282338.
RA Voellenkle C, Rooij Jv, Guffanti A, Brini E, Fasanaro P, Isaia E, Croft L,
RA David M, Capogrossi MC, Moles A, Felsani A, Martelli F;
RT "Deep-sequencing of endothelial cells exposed to hypoxia reveals the
RT complexity of known and novel microRNAs";
RL RNA. 18:472-484(2012).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-368; hsa-miR-368.
DR HGNC; 31782; MIR376C.
DR ENTREZGENE; 442913; MIR376C.
XX
CC This miRNA has been named both miR-368 and miR376c in the literature, and
CC previously here. The mature miR-376c product has been shown to be
CC modified by A to I edits [3]. The mature sequence shown here represents
CC the most commonly cloned form from large-scale cloning studies [4]. The
CC 5' end of the miRNA may be offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT modified_base 48
FT /mod_base=i
FT miRNA 5..25
FT /accession="MIMAT0022861"
FT /product="hsa-miR-376c-5p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
FT miRNA 43..63
FT /accession="MIMAT0000720"
FT /product="hsa-miR-376c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4], Northern [1], SOLiD [5]"
XX
SQ Sequence 66 BP; 20 A; 7 C; 12 G; 0 T; 27 other;
aaaaggugga uauuccuucu auguuuaugu uauuuauggu uaaacauaga ggaaauucca 60
cguuuu 66
//
ID hsa-mir-369 standard; RNA; HSA; 70 BP.
XX
AC MI0000777;
XX
DE Homo sapiens miR-369 stem-loop
XX
RN [1]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [2]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [3]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 31783; MIR369.
DR ENTREZGENE; 442914; MIR369.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0001621"
FT /product="hsa-miR-369-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
FT miRNA 44..64
FT /accession="MIMAT0000721"
FT /product="hsa-miR-369-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4]"
XX
SQ Sequence 70 BP; 17 A; 11 C; 15 G; 0 T; 27 other;
uugaagggag aucgaccgug uuauauucgc uuuauugacu ucgaauaaua caugguugau 60
cuuuucucag 70
//
ID hsa-mir-370 standard; RNA; HSA; 75 BP.
XX
AC MI0000778;
XX
DE Homo sapiens miR-370 stem-loop
XX
RN [1]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-370; hsa-miR-370.
DR HGNC; 31784; MIR370.
DR ENTREZGENE; 442915; MIR370.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0026483"
FT /product="hsa-miR-370-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 48..69
FT /accession="MIMAT0000722"
FT /product="hsa-miR-370-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4]"
XX
SQ Sequence 75 BP; 16 A; 20 C; 23 G; 0 T; 16 other;
agacagagaa gccaggucac gucucugcag uuacacagcu cacgagugcc ugcuggggug 60
gaaccugguc ugucu 75
//
ID hsa-mir-371a standard; RNA; HSA; 67 BP.
XX
AC MI0000779;
XX
DE Homo sapiens miR-371a stem-loop
XX
RN [1]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-371; hsa-miR-371.
DR HGNC; 31785; MIR371.
DR ENTREZGENE; 442916; MIR371.
XX
CC Human miR-371 (MIR:MI0000779), miR-372 (MIR:MI0000780) and miR-373
CC (MIR:MI0000781) are clustered within 1.1kb on chromosome 19. The mature
CC sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [2]. The 5' end of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..25
FT /accession="MIMAT0004687"
FT /product="hsa-miR-371a-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 42..64
FT /accession="MIMAT0000723"
FT /product="hsa-miR-371a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
XX
SQ Sequence 67 BP; 11 A; 16 C; 19 G; 0 T; 21 other;
guggcacuca aacugugggg gcacuuucug cucucuggug aaagugccgc caucuuuuga 60
guguuac 67
//
ID hsa-mir-372 standard; RNA; HSA; 67 BP.
XX
AC MI0000780;
XX
DE Homo sapiens miR-372 stem-loop
XX
RN [1]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-372; hsa-miR-372.
DR HGNC; 31786; MIR372.
DR ENTREZGENE; 442917; MIR372.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0026484"
FT /product="hsa-miR-372-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 42..64
FT /accession="MIMAT0000724"
FT /product="hsa-miR-372-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], Illumina [3]"
XX
SQ Sequence 67 BP; 16 A; 14 C; 20 G; 0 T; 17 other;
gugggccuca aauguggagc acuauucuga uguccaagug gaaagugcug cgacauuuga 60
gcgucac 67
//
ID hsa-mir-373 standard; RNA; HSA; 69 BP.
XX
AC MI0000781;
XX
DE Homo sapiens miR-373 stem-loop
XX
RN [1]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-373; hsa-miR-373.
DR TARGETS:PICTAR-VERT; hsa-miR-373*; hsa-miR-373*.
DR HGNC; 31787; MIR373.
DR ENTREZGENE; 442918; MIR373.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000725"
FT /product="hsa-miR-373-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 44..66
FT /accession="MIMAT0000726"
FT /product="hsa-miR-373-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
XX
SQ Sequence 69 BP; 10 A; 13 C; 22 G; 0 T; 24 other;
gggauacuca aaaugggggc gcuuuccuuu uugucuguac ugggaagugc uucgauuuug 60
ggguguccc 69
//
ID hsa-mir-374a standard; RNA; HSA; 72 BP.
XX
AC MI0000782;
XX
DE Homo sapiens miR-374a stem-loop
XX
RN [1]
RX PUBMED; 15183728.
RA Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS,
RA Moon SY, Kim VN, Kim KS;
RT "Human embryonic stem cells express a unique set of microRNAs";
RL Dev Biol. 270:488-498(2004).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-374; hsa-miR-374.
DR HGNC; 31788; MIR374A.
DR ENTREZGENE; 442919; MIR374A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0000727"
FT /product="hsa-miR-374a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1]"
FT miRNA 42..63
FT /accession="MIMAT0004688"
FT /product="hsa-miR-374a-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 72 BP; 22 A; 11 C; 12 G; 0 T; 27 other;
uacaucggcc auuauaauac aaccugauaa guguuauagc acuuaucaga uuguauugua 60
auugucugug ua 72
//
ID hsa-mir-375 standard; RNA; HSA; 64 BP.
XX
AC MI0000783;
XX
DE Homo sapiens miR-375 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-375; hsa-miR-375.
DR HGNC; 31868; MIR375.
DR ENTREZGENE; 494324; MIR375.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..27
FT /accession="MIMAT0037313"
FT /product="hsa-miR-375-5p"
FT /evidence=not_experimental
FT miRNA 40..61
FT /accession="MIMAT0000728"
FT /product="hsa-miR-375-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000792"
XX
SQ Sequence 64 BP; 9 A; 24 C; 19 G; 0 T; 12 other;
ccccgcgacg agccccucgc acaaaccgga ccugagcguu uuguucguuc ggcucgcgug 60
aggc 64
//
ID hsa-mir-376a-1 standard; RNA; HSA; 68 BP.
XX
AC MI0000784;
XX
DE Homo sapiens miR-376a-1 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17322061.
RA Kawahara Y, Zinshteyn B, Sethupathy P, Iizasa H, Hatzigeorgiou AG,
RA Nishikura K;
RT "Redirection of silencing targets by adenosine-to-inosine editing of
RT miRNAs";
RL Science. 315:1137-1140(2007).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 31869; MIR376A1.
DR ENTREZGENE; 494325; MIR376A1.
XX
CC The mature miR-376a products have been shown to be modified by A to I
CC edits [3].
XX
FH Key Location/Qualifiers
FH
FT modified_base 9
FT /mod_base=i
FT modified_base 49
FT /mod_base=i
FT miRNA 7..28
FT /accession="MIMAT0003386"
FT /product="hsa-miR-376a-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4]"
FT miRNA 44..64
FT /accession="MIMAT0000729"
FT /product="hsa-miR-376a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,4]"
FT /similarity="MI0000793"
XX
SQ Sequence 68 BP; 23 A; 10 C; 10 G; 0 T; 25 other;
uaaaagguag auucuccuuc uaugaguaca uuauuuauga uuaaucauag aggaaaaucc 60
acguuuuc 68
//
ID hsa-mir-377 standard; RNA; HSA; 69 BP.
XX
AC MI0000785;
XX
DE Homo sapiens miR-377 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-377; hsa-miR-377.
DR HGNC; 31870; MIR377.
DR ENTREZGENE; 494326; MIR377.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0004689"
FT /product="hsa-miR-377-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 45..66
FT /accession="MIMAT0000730"
FT /product="hsa-miR-377-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
FT /similarity="MI0000794"
XX
SQ Sequence 69 BP; 16 A; 11 C; 16 G; 0 T; 26 other;
uugagcagag guugcccuug gugaauucgc uuuauuuaug uugaaucaca caaaggcaac 60
uuuuguuug 69
//
ID hsa-mir-378a standard; RNA; HSA; 66 BP.
XX
AC MI0000786;
XX
DE Homo sapiens miR-378a stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-378; hsa-miR-378.
DR HGNC; 31871; MIR378.
DR ENTREZGENE; 494327; MIR378.
XX
CC miR-422b was the most abundant miRNA cloned from human promyelocytic
CC leukemia (HL-60) cells [2]. The sequence originates from the opposite arm
CC of the human homologue of previously identified mouse mir-378 [1].
CC Landgraf et al. show that the 3' product (previously called miR-422b) is
CC the predominant one [3]. Further, mir-378 and mir-422a loci are
CC unrelated. miR-422b is thus renamed miR-378 here.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0000731"
FT /product="hsa-miR-378a-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000795"
FT miRNA 43..64
FT /accession="MIMAT0000732"
FT /product="hsa-miR-378a-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Northern [2]"
XX
SQ Sequence 66 BP; 15 A; 16 C; 19 G; 0 T; 16 other;
agggcuccug acuccagguc cuguguguua ccuagaaaua gcacuggacu uggagucaga 60
aggccu 66
//
ID hsa-mir-379 standard; RNA; HSA; 67 BP.
XX
AC MI0000787;
XX
DE Homo sapiens miR-379 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [3]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-379; hsa-miR-379.
DR HGNC; 31872; MIR379.
DR ENTREZGENE; 494328; MIR379.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0000733"
FT /product="hsa-miR-379-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
FT /similarity="MI0000796"
FT miRNA 44..65
FT /accession="MIMAT0004690"
FT /product="hsa-miR-379-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 67 BP; 19 A; 12 C; 16 G; 0 T; 20 other;
agagauggua gacuauggaa cguaggcguu augauuucug accuauguaa caugguccac 60
uaacucu 67
//
ID hsa-mir-380 standard; RNA; HSA; 61 BP.
XX
AC MI0000788;
XX
DE Homo sapiens miR-380 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 31873; MIR380.
DR ENTREZGENE; 494329; MIR380.
XX
CC Landgraf et al. confirm that the 3' product is the predominant one [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0000734"
FT /product="hsa-miR-380-5p"
FT /evidence=not_experimental
FT /similarity="MI0000797"
FT miRNA 40..61
FT /accession="MIMAT0000735"
FT /product="hsa-miR-380-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000797"
XX
SQ Sequence 61 BP; 16 A; 12 C; 13 G; 0 T; 20 other;
aagaugguug accauagaac augcgcuauc ucugugucgu auguaauaug guccacaucu 60
u 61
//
ID hsa-mir-381 standard; RNA; HSA; 75 BP.
XX
AC MI0000789;
XX
DE Homo sapiens miR-381 stem-loop
XX
RN [1]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 22282338.
RA Voellenkle C, Rooij Jv, Guffanti A, Brini E, Fasanaro P, Isaia E, Croft L,
RA David M, Capogrossi MC, Moles A, Felsani A, Martelli F;
RT "Deep-sequencing of endothelial cells exposed to hypoxia reveals the
RT complexity of known and novel microRNAs";
RL RNA. 18:472-484(2012).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-381; hsa-miR-381.
DR HGNC; 31874; MIR381.
DR ENTREZGENE; 494330; MIR381.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0022862"
FT /product="hsa-miR-381-5p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
FT miRNA 49..70
FT /accession="MIMAT0000736"
FT /product="hsa-miR-381-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000798"
XX
SQ Sequence 75 BP; 20 A; 12 C; 18 G; 0 T; 25 other;
uacuuaaagc gagguugccc uuuguauauu cgguuuauug acauggaaua uacaagggca 60
agcucucugu gagua 75
//
ID hsa-mir-382 standard; RNA; HSA; 76 BP.
XX
AC MI0000790;
XX
DE Homo sapiens miR-382 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-382; hsa-miR-382.
DR HGNC; 31875; MIR382.
DR ENTREZGENE; 494331; MIR382.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0000737"
FT /product="hsa-miR-382-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
FT /similarity="MI0000799"
FT miRNA 47..67
FT /accession="MIMAT0022697"
FT /product="hsa-miR-382-3p"
FT /evidence=not_experimental
XX
SQ Sequence 76 BP; 20 A; 13 C; 16 G; 0 T; 27 other;
uacuugaaga gaaguuguuc gugguggauu cgcuuuacuu augacgaauc auucacggac 60
aacacuuuuu ucagua 76
//
ID hsa-mir-383 standard; RNA; HSA; 73 BP.
XX
AC MI0000791;
XX
DE Homo sapiens miR-383 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-383; hsa-miR-383.
DR HGNC; 31876; MIR383.
DR ENTREZGENE; 494332; MIR383.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000738"
FT /product="hsa-miR-383-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000800"
FT miRNA 50..68
FT /accession="MIMAT0026485"
FT /product="hsa-miR-383-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 73 BP; 19 A; 15 C; 21 G; 0 T; 18 other;
cuccucagau cagaagguga uuguggcuuu ggguggauau uaaucagcca cagcacugcc 60
uggucagaaa gag 73
//
ID mmu-mir-375 standard; RNA; MMU; 64 BP.
XX
AC MI0000792;
XX
DE Mus musculus miR-375 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619376; Mir375.
DR ENTREZGENE; 723900; Mir375.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0017078"
FT /product="mmu-miR-375-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 40..61
FT /accession="MIMAT0000739"
FT /product="mmu-miR-375-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 64 BP; 9 A; 24 C; 19 G; 0 T; 12 other;
ccccgcgacg agccccucgc acaaaccgga ccugagcguu uuguucguuc ggcucgcgug 60
aggc 64
//
ID mmu-mir-376a standard; RNA; MMU; 68 BP.
XX
AC MI0000793;
XX
DE Mus musculus miR-376a stem-loop
XX
RN [1]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [4]
RX PUBMED; 17322061.
RA Kawahara Y, Zinshteyn B, Sethupathy P, Iizasa H, Hatzigeorgiou AG,
RA Nishikura K;
RT "Redirection of silencing targets by adenosine-to-inosine editing of
RT miRNAs";
RL Science. 315:1137-1140(2007).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619377; Mir376a.
DR ENTREZGENE; 723855; Mir376a.
XX
CC Seitz et al. predicted a cluster of 40 miRNAs in the imprinted human 14q32
CC domain, and confirmed the expression of a subset by Northern blot or
CC primer extension in mouse [1]. The expression of miR-376a was
CC independently verified by Poy et al. [2]. The mature miR-376a products
CC have been shown to be modified by A to I edits [4]. The mature sequence
CC shown here represents the most commonly cloned form from large-scale
CC cloning studies [5].
XX
FH Key Location/Qualifiers
FH
FT modified_base 9
FT /mod_base=i
FT miRNA 6..27
FT /accession="MIMAT0003387"
FT /product="mmu-miR-376a-5p"
FT /evidence=experimental
FT /experiment="cloned [3,5], Illumina [6-7]"
FT miRNA 44..64
FT /accession="MIMAT0000740"
FT /product="mmu-miR-376a-3p"
FT /evidence=experimental
FT /experiment="Northern [1], PCR [1], cloned [2-3,5],
FT Illumina [6-7]"
XX
SQ Sequence 68 BP; 24 A; 11 C; 11 G; 0 T; 22 other;
uaaaagguag auucuccuuc uaugaguaca auauuaauga cuaaucguag aggaaaaucc 60
acguuuuc 68
//
ID mmu-mir-377 standard; RNA; MMU; 68 BP.
XX
AC MI0000794;
XX
DE Mus musculus miR-377 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619382; Mir377.
DR ENTREZGENE; 723857; Mir377.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0017079"
FT /product="mmu-miR-377-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 44..65
FT /accession="MIMAT0000741"
FT /product="mmu-miR-377-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
XX
SQ Sequence 68 BP; 16 A; 11 C; 17 G; 0 T; 24 other;
ugagcagagg uugcccuugg ugaauucgcu uuauugaugu ugaaucacac aaaggcaacu 60
uuuguuug 68
//
ID mmu-mir-378a standard; RNA; MMU; 66 BP.
XX
AC MI0000795;
XX
DE Mus musculus miR-378 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3617791; Mir378.
DR ENTREZGENE; 723889; Mir378.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0000742"
FT /product="mmu-miR-378a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 43..63
FT /accession="MIMAT0003151"
FT /product="mmu-miR-378a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0000786"
XX
SQ Sequence 66 BP; 14 A; 17 C; 19 G; 0 T; 16 other;
agggcuccug acuccagguc cuguguguua ccucgaaaua gcacuggacu uggagucaga 60
aggccu 66
//
ID mmu-mir-379 standard; RNA; MMU; 66 BP.
XX
AC MI0000796;
XX
DE Mus musculus miR-379 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619386; Mir379.
DR ENTREZGENE; 723858; Mir379.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0000743"
FT /product="mmu-miR-379-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Illumina [5,7]"
FT miRNA 43..64
FT /accession="MIMAT0017080"
FT /product="mmu-miR-379-3p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
XX
SQ Sequence 66 BP; 18 A; 11 C; 16 G; 0 T; 21 other;
agagauggua gacuauggaa cguaggcguu auguuuuuga ccuauguaac augguccacu 60
aacucu 66
//
ID mmu-mir-380 standard; RNA; MMU; 61 BP.
XX
AC MI0000797;
XX
DE Mus musculus miR-380 stem-loop
XX
RN [1]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619389; Mir380.
DR ENTREZGENE; 723859; Mir380.
XX
CC Seitz et al. predicted a cluster of 40 miRNAs in the imprinted human 14q32
CC domain, and confirmed the expression of a subset by Northern blot or
CC primer extension in mouse, including a sequence from the 3' arm of this
CC precursor [1]. Poy et al. cloned a sequence from the 5' arm from mouse
CC pancreatic beta cell line MIN6 [2]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [3]. The 5' end of the miRNA may be offset with respect to previous
CC annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0000744"
FT /product="mmu-miR-380-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [4-5]"
FT miRNA 40..61
FT /accession="MIMAT0000745"
FT /product="mmu-miR-380-3p"
FT /evidence=experimental
FT /experiment="Northern [1], PCR [1], cloned [3], Illumina
FT [4]"
XX
SQ Sequence 61 BP; 15 A; 12 C; 14 G; 0 T; 20 other;
aagaugguug accauagaac augcgcuacu ucugugucgu auguaguaug guccacaucu 60
u 61
//
ID mmu-mir-381 standard; RNA; MMU; 75 BP.
XX
AC MI0000798;
XX
DE Mus musculus miR-381 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619391; Mir381.
DR ENTREZGENE; 723935; Mir381.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0017081"
FT /product="mmu-miR-381-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 49..70
FT /accession="MIMAT0000746"
FT /product="mmu-miR-381-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 75 BP; 20 A; 12 C; 18 G; 0 T; 25 other;
uacuuaaagc gagguugccc uuuguauauu cgguuuauug acauggaaua uacaagggca 60
agcucucugu gagua 75
//
ID mmu-mir-382 standard; RNA; MMU; 76 BP.
XX
AC MI0000799;
XX
DE Mus musculus miR-382 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619392; Mir382.
DR ENTREZGENE; 723912; Mir382.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0000747"
FT /product="mmu-miR-382-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 49..70
FT /accession="MIMAT0004691"
FT /product="mmu-miR-382-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 76 BP; 19 A; 13 C; 17 G; 0 T; 27 other;
uacuugaaga gaaguuguuc gugguggauu cgcuuuacuu gugacgaauc auucacggac 60
aacacuuuuu ucagua 76
//
ID mmu-mir-383 standard; RNA; MMU; 70 BP.
XX
AC MI0000800;
XX
DE Mus musculus miR-383 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619393; Mir383.
DR ENTREZGENE; 723860; Mir383.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0000748"
FT /product="mmu-miR-383-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 45..65
FT /accession="MIMAT0017082"
FT /product="mmu-miR-383-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 70 BP; 19 A; 14 C; 21 G; 0 T; 16 other;
cucagaucag aaggugacug uggcuuuggg uggauauuaa ucagccacag cacugccugg 60
ucagaaagag 70
//
ID cel-lsy-6 standard; RNA; CEL; 73 BP.
XX
AC MI0000801;
XX
DE Caenorhabditis elegans lsy-6 stem-loop
XX
RN [1]
RX PUBMED; 14685240.
RA Johnston RJ, Hobert O;
RT "A microRNA controlling left/right neuronal asymmetry in Caenorhabditis
RT elegans";
RL Nature. 426:845-849(2003).
XX
RN [2]
RX PUBMED; 15317971.
RA Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB;
RT "Patterns of flanking sequence conservation and a characteristic upstream
RT motif for microRNA gene identification";
RL RNA. 10:1309-1322(2004).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 21085120.
RA Jan CH, Friedman RC, Ruby JG, Bartel DP;
RT "Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs";
RL Nature. 469:97-101(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0031896"
FT /product="cel-lsy-6-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 49..70
FT /accession="MIMAT0000749"
FT /product="cel-lsy-6-3p"
FT /evidence=experimental
FT /experiment="cloned [2], PCR [2], Illumina [3-4]"
XX
SQ Sequence 73 BP; 28 A; 12 C; 12 G; 0 T; 21 other;
ccaucaaaug cgucuaguau caaaaucaug uaaaaacugu aaaacagauu uuguaugaga 60
cgcauuucga uga 73
//
ID hsa-mir-340 standard; RNA; HSA; 95 BP.
XX
AC MI0000802;
XX
DE Homo sapiens miR-340 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-340; hsa-miR-340.
DR HGNC; 31777; MIR340.
DR ENTREZGENE; 442908; MIR340.
XX
CC This sequence is the predicted homologue of a miRNA cloned from rat
CC neuronal tissue [1,2]. Landgraf et al. show that the 5' product is the
CC predominant one in human, mouse and rat [3], in contrast to the previous
CC annotation. The mature sequence shown here represents the most commonly
CC cloned form from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0004692"
FT /product="hsa-miR-340-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 58..79
FT /accession="MIMAT0000750"
FT /product="hsa-miR-340-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000622"
XX
SQ Sequence 95 BP; 22 A; 16 C; 21 G; 0 T; 36 other;
uuguaccugg ugugauuaua aagcaaugag acugauuguc auaugucguu ugugggaucc 60
gucucaguua cuuuauagcc auaccuggua ucuua 95
//
ID hsa-mir-330 standard; RNA; HSA; 94 BP.
XX
AC MI0000803;
XX
DE Homo sapiens miR-330 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-330; hsa-miR-330.
DR HGNC; 31771; MIR330.
DR ENTREZGENE; 442902; MIR330.
XX
CC This sequence is the predicted homologue of a miRNA cloned from rat
CC neuronal tissue [1,2], later verified in human [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0004693"
FT /product="hsa-miR-330-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT miRNA 57..79
FT /accession="MIMAT0000751"
FT /product="hsa-miR-330-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000606"
XX
SQ Sequence 94 BP; 18 A; 31 C; 26 G; 0 T; 19 other;
cuuuggcgau cacugccucu cugggccugu gucuuaggcu cugcaagauc aaccgagcaa 60
agcacacggc cugcagagag gcagcgcucu gccc 94
//
ID hsa-mir-328 standard; RNA; HSA; 75 BP.
XX
AC MI0000804;
XX
DE Homo sapiens miR-328 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-328; hsa-miR-328.
DR HGNC; 31770; MIR328.
DR ENTREZGENE; 442901; MIR328.
XX
CC This sequence is the predicted homologue of a miRNA cloned from rat
CC neuronal tissue [1,2], later verified in human [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0026486"
FT /product="hsa-miR-328-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 48..69
FT /accession="MIMAT0000752"
FT /product="hsa-miR-328-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4]"
FT /similarity="MI0000602"
XX
SQ Sequence 75 BP; 11 A; 23 C; 28 G; 0 T; 13 other;
uggagugggg gggcaggagg ggcucaggga gaaagugcau acagccccug gcccucucug 60
cccuuccguc cccug 75
//
ID hsa-mir-342 standard; RNA; HSA; 99 BP.
XX
AC MI0000805;
XX
DE Homo sapiens miR-342 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [5]
RX PUBMED; 18230126.
RA Afanasyeva EA, Hotz-Wagenblatt A, Glatting KH, Westermann F;
RT "New miRNAs cloned from neuroblastoma";
RL BMC Genomics. 9:52(2008).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-342; hsa-miR-342.
DR HGNC; 31778; MIR342.
DR ENTREZGENE; 442909; MIR342.
XX
CC This sequence was predicted by homology to a rat miRNA [1,2] and later
CC verified in human [3]. The mature sequence shown here represents the most
CC commonly cloned form from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0004694"
FT /product="hsa-miR-342-5p"
FT /evidence=experimental
FT /experiment="cloned [3-5], Northern [5]"
FT miRNA 61..83
FT /accession="MIMAT0000753"
FT /product="hsa-miR-342-3p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT /similarity="MI0000626"
XX
SQ Sequence 99 BP; 25 A; 21 C; 28 G; 0 T; 25 other;
gaaacugggc ucaaggugag gggugcuauc ugugauugag ggacaugguu aauggaauug 60
ucucacacag aaaucgcacc cgucaccuug gccuacuua 99
//
ID hsa-mir-337 standard; RNA; HSA; 93 BP.
XX
AC MI0000806;
XX
DE Homo sapiens miR-337 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-337; hsa-miR-337.
DR HGNC; 31774; MIR337.
DR ENTREZGENE; 442905; MIR337.
XX
CC This sequence was predicted based on homology with a verified rat miRNA
CC [1,2], and later confirmed in human [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0004695"
FT /product="hsa-miR-337-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 61..82
FT /accession="MIMAT0000754"
FT /product="hsa-miR-337-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000614"
XX
SQ Sequence 93 BP; 20 A; 21 C; 24 G; 0 T; 28 other;
guagucagua guuggggggu gggaacggcu ucauacagga guugaugcac aguuauccag 60
cuccuauaug augccuuucu ucauccccuu caa 93
//
ID hsa-mir-323a standard; RNA; HSA; 86 BP.
XX
AC MI0000807;
XX
DE Homo sapiens miR-323a stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-323; hsa-miR-323.
DR HGNC; 31766; MIR323.
DR ENTREZGENE; 442897; MIR323.
XX
CC This sequence is the predicted homologue of a miRNA cloned from rat
CC neuronal tissue [1,2], later verified in human [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0004696"
FT /product="hsa-miR-323a-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 51..71
FT /accession="MIMAT0000755"
FT /product="hsa-miR-323a-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000591"
XX
SQ Sequence 86 BP; 15 A; 19 C; 24 G; 0 T; 28 other;
uugguacuug gagagaggug guccguggcg cguucgcuuu auuuauggcg cacauuacac 60
ggucgaccuc uuugcaguau cuaauc 86
//
ID hsa-mir-326 standard; RNA; HSA; 95 BP.
XX
AC MI0000808;
XX
DE Homo sapiens miR-326 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-326; hsa-miR-326.
DR HGNC; 31769; MIR326.
DR ENTREZGENE; 442900; MIR326.
XX
CC This sequence is the predicted homologue of a miRNA cloned from rat
CC neuronal tissue [1,2], later verified in human [3]. miR-326 cloned in [3]
CC has a 1 nt 3' extension (U), which is incompatible with the genome
CC sequence.
XX
FH Key Location/Qualifiers
FH
FT miRNA 60..79
FT /accession="MIMAT0000756"
FT /product="hsa-miR-326"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000599"
XX
SQ Sequence 95 BP; 11 A; 28 C; 33 G; 0 T; 23 other;
cucaucuguc uguugggcug gaggcagggc cuuugugaag gcggguggug cucagaucgc 60
cucugggccc uuccuccagc cccgaggcgg auuca 95
//
ID hsa-mir-151a standard; RNA; HSA; 90 BP.
XX
AC MI0000809;
XX
DE Homo sapiens miR-151a stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-151; hsa-miR-151.
DR HGNC; 31762; MIR151.
DR ENTREZGENE; 442893; MIR151.
XX
CC This sequence is the predicted homologue of a miRNA cloned from rat
CC neuronal tissue [1,2], later verified in human [3,4]. The mature sequence
CC shown here represents the most commonly cloned form from large-scale
CC cloning studies [4]. The 5' end of the miRNA may be offset with respect
CC to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0004697"
FT /product="hsa-miR-151a-5p"
FT /evidence=experimental
FT /experiment="cloned [4-5]"
FT miRNA 47..67
FT /accession="MIMAT0000757"
FT /product="hsa-miR-151a-3p"
FT /evidence=experimental
FT /experiment="cloned [3-5], Northern [3]"
FT /similarity="MI0000647"
XX
SQ Sequence 90 BP; 19 A; 28 C; 19 G; 0 T; 24 other;
uuuccugccc ucgaggagcu cacagucuag uaugucucau ccccuacuag acugaagcuc 60
cuugaggaca gggaugguca uacucaccuc 90
//
ID hsa-mir-135b standard; RNA; HSA; 97 BP.
XX
AC MI0000810;
XX
DE Homo sapiens miR-135b stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-135b; hsa-miR-135b.
DR HGNC; 31760; MIR135B.
DR ENTREZGENE; 442891; MIR135B.
XX
CC This sequence is the predicted homologue of a miRNA cloned from rat
CC neuronal tissue [1,2], later verified in human [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000758"
FT /product="hsa-miR-135b-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT /similarity="MI0000645"
FT miRNA 55..76
FT /accession="MIMAT0004698"
FT /product="hsa-miR-135b-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 97 BP; 19 A; 25 C; 26 G; 0 T; 27 other;
cacucugcug uggccuaugg cuuuucauuc cuaugugauu gcugucccaa acucauguag 60
ggcuaaaagc caugggcuac agugaggggc gagcucc 97
//
ID hsa-mir-148b standard; RNA; HSA; 99 BP.
XX
AC MI0000811;
XX
DE Homo sapiens miR-148b stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-148b; hsa-miR-148b.
DR HGNC; 31761; MIR148B.
DR ENTREZGENE; 442892; MIR148B.
XX
CC This sequence is the predicted homologue of a miRNA cloned from rat
CC neuronal tissue [1,2]. Its expression was later verified in human [3,4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0004699"
FT /product="hsa-miR-148b-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 63..84
FT /accession="MIMAT0000759"
FT /product="hsa-miR-148b-3p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT /similarity="MI0000616"
XX
SQ Sequence 99 BP; 26 A; 21 C; 22 G; 0 T; 30 other;
caagcacgau uagcauuuga ggugaaguuc uguuauacac ucaggcugug gcucucugaa 60
agucagugca ucacagaacu uugucucgaa agcuuucua 99
//
ID hsa-mir-331 standard; RNA; HSA; 94 BP.
XX
AC MI0000812;
XX
DE Homo sapiens miR-331 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-331; hsa-miR-331.
DR HGNC; 31772; MIR331.
DR ENTREZGENE; 442903; MIR331.
XX
CC This sequence is the predicted homologue of a miRNA cloned from rat
CC neuronal tissue [1,2], later verified in human [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..47
FT /accession="MIMAT0004700"
FT /product="hsa-miR-331-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 61..81
FT /accession="MIMAT0000760"
FT /product="hsa-miR-331-3p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT /similarity="MI0000608"
XX
SQ Sequence 94 BP; 19 A; 24 C; 24 G; 0 T; 27 other;
gaguuugguu uuguuugggu uuguucuagg uaugguccca gggaucccag aucaaaccag 60
gccccugggc cuauccuaga accaaccuaa gcuc 94
//
ID hsa-mir-324 standard; RNA; HSA; 83 BP.
XX
AC MI0000813;
XX
DE Homo sapiens miR-324 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-324-3p; hsa-miR-324-3p.
DR TARGETS:PICTAR-VERT; hsa-miR-324-5p; hsa-miR-324-5p.
DR HGNC; 31767; MIR324.
DR ENTREZGENE; 442898; MIR324.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000761"
FT /product="hsa-miR-324-5p"
FT /evidence=experimental
FT /experiment="cloned [4-5]"
FT /similarity="MI0000594"
FT miRNA 50..72
FT /accession="MIMAT0000762"
FT /product="hsa-miR-324-3p"
FT /evidence=experimental
FT /experiment="cloned [3-5]"
FT /similarity="MI0000594"
XX
SQ Sequence 83 BP; 13 A; 26 C; 25 G; 0 T; 19 other;
cugacuaugc cuccccgcau ccccuagggc auugguguaa agcuggagac ccacugcccc 60
aggugcugcu ggggguugua guc 83
//
ID hsa-mir-338 standard; RNA; HSA; 67 BP.
XX
AC MI0000814;
XX
DE Homo sapiens miR-338 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-338; hsa-miR-338.
DR HGNC; 31775; MIR338.
DR ENTREZGENE; 442906; MIR338.
XX
CC This sequence is the predicted homologue of a miRNA cloned from rat
CC neuronal tissue [1,2], later verified in human [3]. The mature sequence
CC shown here represents the most commonly cloned form from large-scale
CC cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0004701"
FT /product="hsa-miR-338-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT miRNA 42..63
FT /accession="MIMAT0000763"
FT /product="hsa-miR-338-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000618"
XX
SQ Sequence 67 BP; 17 A; 15 C; 16 G; 0 T; 19 other;
ucuccaacaa uauccuggug cugagugaug acucaggcga cuccagcauc agugauuuug 60
uugaaga 67
//
ID hsa-mir-339 standard; RNA; HSA; 94 BP.
XX
AC MI0000815;
XX
DE Homo sapiens miR-339 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [3]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-339; hsa-miR-339.
DR HGNC; 31776; MIR339.
DR ENTREZGENE; 442907; MIR339.
XX
CC This sequence is the predicted homologue of a miRNA cloned from rat
CC neuronal tissue [1,3]. Expression of mature miRNA was later verified in
CC human [2,4]. The mature sequence shown here represents the most commonly
CC cloned form from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0000764"
FT /product="hsa-miR-339-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4]"
FT /similarity="MI0000620"
FT miRNA 50..72
FT /accession="MIMAT0004702"
FT /product="hsa-miR-339-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 94 BP; 9 A; 38 C; 31 G; 0 T; 16 other;
cggggcggcc gcucucccug uccuccagga gcucacgugu gccugccugu gagcgccucg 60
acgacagagc cggcgccugc cccagugucu gcgc 94
//
ID hsa-mir-335 standard; RNA; HSA; 94 BP.
XX
AC MI0000816;
XX
DE Homo sapiens miR-335 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-335; hsa-miR-335.
DR HGNC; 31773; MIR335.
DR ENTREZGENE; 442904; MIR335.
XX
CC This sequence is the predicted homologue of a miRNA cloned from rat
CC neuronal tissue [1,2], later verified in human [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000765"
FT /product="hsa-miR-335-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4]"
FT /similarity="MI0000612"
FT miRNA 52..73
FT /accession="MIMAT0004703"
FT /product="hsa-miR-335-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 94 BP; 24 A; 19 C; 17 G; 0 T; 34 other;
uguuuugagc gggggucaag agcaauaacg aaaaauguuu gucauaaacc guuuuucauu 60
auugcuccug accuccucuc auuugcuaua uuca 94
//
ID mmu-mir-335 standard; RNA; MMU; 98 BP.
XX
AC MI0000817;
XX
DE Mus musculus miR-335 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17687032.
RA Sathyan P, Golden HB, Miranda RC;
RT "Competing interactions between micro-RNAs determine neural progenitor
RT survival and proliferation after ethanol exposure: evidence from an ex
RT vivo model of the fetal cerebral cortical neuroepithelium";
RL J Neurosci. 27:8546-8557(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619348; Mir335.
DR ENTREZGENE; 723930; Mir335.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000766"
FT /product="mmu-miR-335-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [5-6]"
FT /similarity="MI0000612"
FT miRNA 56..77
FT /accession="MIMAT0004704"
FT /product="mmu-miR-335-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [5-6]"
XX
SQ Sequence 98 BP; 22 A; 21 C; 21 G; 0 T; 34 other;
ucuuuugggc gggggucaag agcaauaacg aaaaauguuu guuuuucgua aaccguuuuu 60
cauuauugcu ccugaccccc ucucaugggu uauagcca 98
//
ID cbr-lsy-6 standard; RNA; CBR; 74 BP.
XX
AC MI0000818;
XX
DE Caenorhabditis briggsae lsy-6 stem-loop
XX
RN [1]
RX PUBMED; 14685240.
RA Johnston RJ, Hobert O;
RT "A microRNA controlling left/right neuronal asymmetry in Caenorhabditis
RT elegans";
RL Nature. 426:845-849(2003).
XX
RN [2]
RX PUBMED; 15317971.
RA Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB;
RT "Patterns of flanking sequence conservation and a characteristic upstream
RT motif for microRNA gene identification";
RL RNA. 10:1309-1322(2004).
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..70
FT /accession="MIMAT0000767"
FT /product="cbr-lsy-6"
FT /evidence=not_experimental
FT /similarity="MI0000801"
XX
SQ Sequence 74 BP; 24 A; 16 C; 17 G; 0 T; 17 other;
ccacagaaug cguccaguau caaaaucaca ucaaagagaa uacgguggau uuuguaugag 60
acgcauuccg uggc 74
//
ID cel-mir-392 standard; RNA; CEL; 110 BP.
XX
AC MI0000819;
XX
DE Caenorhabditis elegans miR-392 stem-loop
XX
RN [1]
RX PUBMED; 15317971.
RA Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB;
RT "Patterns of flanking sequence conservation and a characteristic upstream
RT motif for microRNA gene identification";
RL RNA. 10:1309-1322(2004).
XX
RN [2]
RX PUBMED; 17174894.
RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP;
RT "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
RT endogenous siRNAs in C. elegans";
RL Cell. 127:1193-1207(2006).
XX
RN [3]
RX PUBMED; 19460142.
RA Kato M, de Lencastre A, Pincus Z, Slack FJ;
RT "Dynamic expression of small non-coding RNAs, including novel microRNAs
RT and piRNAs/21U-RNAs, during Caenorhabditis elegans development";
RL Genome Biol. 10:R54(2009).
XX
RN [4]
RX PUBMED; 21307183.
RA Warf MB, Johnson WE, Bass BL;
RT "Improved annotation of C. elegans microRNAs by deep sequencing reveals
RT structures associated with processing by Drosha and Dicer";
RL RNA. 17:563-577(2011).
XX
CC This miRNA was predicted by computational analysis of C. elegans and C.
CC briggsae, and expression of the mature microRNA confirmed by PCR
CC amplification, cloning and sequencing [1]. The 5' end of the mature
CC sequence was mapped by PCR, and the 3' end confirmed later [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..51
FT /accession="MIMAT0020344"
FT /product="cel-miR-392-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 68..89
FT /accession="MIMAT0000768"
FT /product="cel-miR-392-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], PCR [1], Illumina [3-4]"
XX
SQ Sequence 110 BP; 35 A; 20 C; 24 G; 0 T; 31 other;
uuuuugaaaa ucucgcagac guguucaguc agcauucgug guugaggaua ucgaacacaa 60
aaaaagauau caucgaucac gugugaugac agauuuucug cgacuaacag 110
//
ID mmu-mir-133a-2 standard; RNA; MMU; 104 BP.
XX
AC MI0000820;
XX
DE Mus musculus miR-133a-2 stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618718; Mir133a-2.
DR ENTREZGENE; 723954; Mir133a-2.
XX
CC This mature miRNA sequence was named miR-133 in reference [1], and renamed
CC miR-133a on subsequent identification of a homologue differing at the
CC terminal 3' position (MIR:MI0000821). The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [3]. The 5' end of the miRNA may be offset with respect to previous
CC annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0003473"
FT /product="mmu-miR-133a-5p"
FT /evidence=experimental
FT /experiment="MPSS [2], Illumina [4-5]"
FT miRNA 59..80
FT /accession="MIMAT0000145"
FT /product="mmu-miR-133a-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Illumina [4-5]"
XX
SQ Sequence 104 BP; 28 A; 25 C; 26 G; 0 T; 25 other;
agaagccaaa ugcuuugcug aagcugguaa aauggaacca aaucagcugu uggauggauu 60
ugguccccuu caaccagcug uagcugcgca uugaucacgc cgca 104
//
ID mmu-mir-133b standard; RNA; MMU; 119 BP.
XX
AC MI0000821;
XX
DE Mus musculus miR-133b stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618720; Mir133b.
DR ENTREZGENE; 723817; Mir133b.
XX
CC miR-133b was predicted based on comparative analysis of human, mouse and
CC Fugu [1]. It is homologous to miR-133a (MIR:MI0000159 and MIR:MI0000820).
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..50
FT /accession="MIMAT0017083"
FT /product="mmu-miR-133b-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 66..87
FT /accession="MIMAT0000769"
FT /product="mmu-miR-133b-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [4-5]"
FT /similarity="MI0000820"
XX
SQ Sequence 119 BP; 27 A; 35 C; 32 G; 0 T; 25 other;
ccuccaaagg gaguggcccc cugcucuggc uggucaaacg gaaccaaguc cgucuuccug 60
agagguuugg uccccuucaa ccagcuacag cagggcuggc aaagcucaau auuuggaga 119
//
ID hsa-mir-133b standard; RNA; HSA; 119 BP.
XX
AC MI0000822;
XX
DE Homo sapiens miR-133b stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-133b; hsa-miR-133b.
DR HGNC; 31759; MIR133B.
DR ENTREZGENE; 442890; MIR133B.
XX
CC miR-133b was predicted based on comparative analysis of human, mouse and
CC Fugu [1], and later verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 66..87
FT /accession="MIMAT0000770"
FT /product="hsa-miR-133b"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000820"
XX
SQ Sequence 119 BP; 27 A; 37 C; 31 G; 0 T; 24 other;
ccucagaaga aagaugcccc cugcucuggc uggucaaacg gaaccaaguc cgucuuccug 60
agagguuugg uccccuucaa ccagcuacag cagggcuggc aaugcccagu ccuuggaga 119
//
ID mmu-mir-181b-2 standard; RNA; MMU; 89 BP.
XX
AC MI0000823;
XX
DE Mus musculus miR-181b-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618736; Mir181b-2.
DR ENTREZGENE; 723903; Mir181b-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0000673"
FT /product="mmu-miR-181b-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4], Illumina [5-6]"
FT /similarity="MI0001367"
FT miRNA 54..75
FT /accession="MIMAT0017084"
FT /product="mmu-miR-181b-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
XX
SQ Sequence 89 BP; 26 A; 20 C; 20 G; 0 T; 23 other;
uugauggcug cacucaacau ucauugcugu cgguggguuu gaaugucaac caacucacug 60
aucaaugaau gcaaacugcg ggccaaaaa 89
//
ID hsa-mir-325 standard; RNA; HSA; 98 BP.
XX
AC MI0000824;
XX
DE Homo sapiens miR-325 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-325; hsa-miR-325.
DR HGNC; 31768; MIR325.
DR ENTREZGENE; 442899; MIR325.
XX
CC This sequence is the predicted human homologue [2] of a sequence cloned
CC from rat neuronal tissue [1]. The mature miRNA differs from the rat
CC sequence at two positions, and its expression has not been verified in
CC human.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000771"
FT /product="hsa-miR-325"
FT /evidence=not_experimental
FT /similarity="MI0000596"
XX
SQ Sequence 98 BP; 22 A; 18 C; 24 G; 0 T; 34 other;
auacagugcu ugguuccuag uaggugucca guaaguguuu gugacauaau uuguuuauug 60
aggaccuccu aucaaucaag cacugugcua ggcucugg 98
//
ID hsa-mir-345 standard; RNA; HSA; 98 BP.
XX
AC MI0000825;
XX
DE Homo sapiens miR-345 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
RN [3]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-345; hsa-miR-345.
DR HGNC; 31779; MIR345.
DR ENTREZGENE; 442910; MIR345.
XX
CC This sequence is the predicted human homologue [2] of a sequence cloned
CC from rat neuronal tissue [1], later validated in human [3,4]. The mature
CC sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [4]. The 5' end of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0000772"
FT /product="hsa-miR-345-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4], Northern [3]"
FT /similarity="MI0000631"
FT miRNA 54..75
FT /accession="MIMAT0022698"
FT /product="hsa-miR-345-3p"
FT /evidence=not_experimental
XX
SQ Sequence 98 BP; 18 A; 26 C; 33 G; 0 T; 21 other;
acccaaaccc uaggucugcu gacuccuagu ccagggcucg ugauggcugg ugggcccuga 60
acgagggguc uggaggccug gguuugaaua ucgacagc 98
//
ID hsa-mir-346 standard; RNA; HSA; 95 BP.
XX
AC MI0000826;
XX
DE Homo sapiens miR-346 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15634332.
RA Weber MJ;
RT "New human and mouse microRNA genes found by homology search";
RL FEBS J. 272:59-73(2005).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-346; hsa-miR-346.
DR HGNC; 31780; MIR346.
DR ENTREZGENE; 442911; MIR346.
XX
CC This sequence is the predicted human homologue [2] of a sequence cloned
CC from rat neuronal tissue [1]. The mature miRNA differs from the rat
CC sequence at two positions, and its expression has not been verified in
CC human.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0000773"
FT /product="hsa-miR-346"
FT /evidence=not_experimental
FT /similarity="MI0000633"
XX
SQ Sequence 95 BP; 8 A; 27 C; 37 G; 0 T; 23 other;
ggucucugug uugggcgucu gucugcccgc augccugccu cucuguugcu cugaaggagg 60
caggggcugg gccugcagcu gccugggcag agcgg 95
//
ID rno-let-7a-1 standard; RNA; RNO; 94 BP.
XX
AC MI0000827;
XX
DE Rattus norvegicus let-7a-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314213; Mirlet7a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0000774"
FT /product="rno-let-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT miRNA 64..85
FT /accession="MIMAT0017085"
FT /product="rno-let-7a-1-3p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
XX
SQ Sequence 94 BP; 24 A; 17 C; 23 G; 0 T; 30 other;
uucacugugg gaugagguag uagguuguau aguuuuaggg ucacacccac cacugggaga 60
uaacuauaca aucuacuguc uuuccuaagg ugau 94
//
ID rno-let-7a-2 standard; RNA; RNO; 96 BP.
XX
AC MI0000828;
XX
DE Rattus norvegicus let-7a-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313989; Mirlet7a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000774"
FT /product="rno-let-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT miRNA 62..83
FT /accession="MIMAT0017086"
FT /product="rno-let-7a-2-3p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
XX
SQ Sequence 96 BP; 23 A; 21 C; 26 G; 0 T; 26 other;
cggcaugcuc ccaggcugag guaguagguu guauaguuua gaguuacaac aagggagaua 60
acuguacagc cuccuagcuu uccuugggac uugcac 96
//
ID rno-let-7b standard; RNA; RNO; 85 BP.
XX
AC MI0000829;
XX
DE Rattus norvegicus let-7b stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313990; Mirlet7b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000775"
FT /product="rno-let-7b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT miRNA 61..82
FT /accession="MIMAT0004705"
FT /product="rno-let-7b-3p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [5]"
XX
SQ Sequence 85 BP; 17 A; 20 C; 26 G; 0 T; 22 other;
gcggggugag guaguagguu gugugguuuc agggcaguga ugucgccccu ccgaagauaa 60
cuauacaacc uacugccuuc ccuga 85
//
ID rno-let-7c-1 standard; RNA; RNO; 94 BP.
XX
AC MI0000830;
XX
DE Rattus norvegicus let-7c-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [6]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314184; Mirlet7c-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000776"
FT /product="rno-let-7c-5p"
FT /evidence=experimental
FT /experiment="cloned [1-5], SOLiD [6]"
FT miRNA 61..82
FT /accession="MIMAT0017087"
FT /product="rno-let-7c-1-3p"
FT /evidence=experimental
FT /experiment="SOLiD [6]"
XX
SQ Sequence 94 BP; 19 A; 18 C; 26 G; 0 T; 31 other;
ugugugcauc cggguugagg uaguagguug uaugguuuag aguuacaccc ugggaguuaa 60
cuguacaacc uucuagcuuu ccuuggagca cacu 94
//
ID rno-let-7c-2 standard; RNA; RNO; 95 BP.
XX
AC MI0000831;
XX
DE Rattus norvegicus let-7c-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [6]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314224; Mirlet7c-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000776"
FT /product="rno-let-7c-5p"
FT /evidence=experimental
FT /experiment="cloned [1-5], SOLiD [6]"
FT miRNA 62..83
FT /accession="MIMAT0017088"
FT /product="rno-let-7c-2-3p"
FT /evidence=experimental
FT /experiment="SOLiD [6]"
XX
SQ Sequence 95 BP; 14 A; 22 C; 29 G; 0 T; 30 other;
acggccuuug gggugaggua guagguugua ugguuuuggg cucugccccg cucugcggua 60
acuauacaau cuacugucuu uccugaagug gccgc 95
//
ID rno-let-7e standard; RNA; RNO; 93 BP.
XX
AC MI0000832;
XX
DE Rattus norvegicus let-7e stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313991; Mirlet7e.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000777"
FT /product="rno-let-7e-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT miRNA 60..81
FT /accession="MIMAT0004706"
FT /product="rno-let-7e-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
XX
SQ Sequence 93 BP; 18 A; 29 C; 29 G; 0 T; 17 other;
cgcgcccccc gggcugaggu aggagguugu auaguugagg aagacacccg aggagaucac 60
uauacggccu ccuagcuuuc cccaggcugc gcc 93
//
ID rno-let-7f-1 standard; RNA; RNO; 89 BP.
XX
AC MI0000833;
XX
DE Rattus norvegicus let-7f-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314277; Mirlet7f-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0000778"
FT /product="rno-let-7f-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT miRNA 64..84
FT /accession="MIMAT0017089"
FT /product="rno-let-7f-1-3p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
XX
SQ Sequence 89 BP; 23 A; 12 C; 23 G; 0 T; 31 other;
aucagaguga gguaguagau uguauaguug ugggguagug auuuuacccu guuuaggaga 60
uaacuauaca aucuauugcc uucccugag 89
//
ID rno-let-7f-2 standard; RNA; RNO; 83 BP.
XX
AC MI0000834;
XX
DE Rattus norvegicus let-7f-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313992; Mirlet7f-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0000778"
FT /product="rno-let-7f-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT miRNA 58..78
FT /accession="MIMAT0017090"
FT /product="rno-let-7f-2-3p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
XX
SQ Sequence 83 BP; 20 A; 15 C; 20 G; 0 T; 28 other;
ugugggauga gguaguagau uguauaguuu uagggucaua ccccaucuug gagauaacua 60
uacagucuac ugucuuuccc acg 83
//
ID rno-let-7i standard; RNA; RNO; 85 BP.
XX
AC MI0000835;
XX
DE Rattus norvegicus let-7i stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [6]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313993; Mirlet7i.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000779"
FT /product="rno-let-7i-5p"
FT /evidence=experimental
FT /experiment="cloned [1-5], SOLiD [6]"
FT miRNA 62..83
FT /accession="MIMAT0004707"
FT /product="rno-let-7i-3p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [6]"
XX
SQ Sequence 85 BP; 13 A; 17 C; 29 G; 0 T; 26 other;
cuggcugagg uaguaguuug ugcuguuggu cggguuguga cauugcccgc uguggagaua 60
acugcgcaag cuacugccuu gcuag 85
//
ID rno-mir-7a-2 standard; RNA; RNO; 95 BP.
XX
AC MI0000836;
XX
DE Rattus norvegicus miR-7a-2 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314225; Mir7a-2.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0000606"
FT /product="rno-miR-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0001361"
FT miRNA 57..78
FT /accession="MIMAT0017091"
FT /product="rno-miR-7a-2-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 95 BP; 21 A; 23 C; 24 G; 0 T; 27 other;
ggacagacca gcccugucug gaagacuagu gauuuuguug uugugucugu guccaacaac 60
aagucccagu cugccacaug guguugguca cauca 95
//
ID rno-mir-7b standard; RNA; RNO; 110 BP.
XX
AC MI0000837;
XX
DE Rattus norvegicus miR-7b stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR ENTREZGENE; 100314185; Mir7b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..51
FT /accession="MIMAT0000780"
FT /product="rno-miR-7b"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT /similarity="MI0001362"
XX
SQ Sequence 110 BP; 32 A; 25 C; 24 G; 0 T; 29 other;
aggccagaac acaugagcca augcuaugug gaagacuugu gauuuuguug uucugauaug 60
auaugacaac aagucacagc cagccucaua gaguggacuc ccaucaccuu 110
//
ID rno-mir-9a-1 standard; RNA; RNO; 89 BP.
XX
AC MI0000838;
XX
DE Rattus norvegicus miR-9a-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313994; Mir9-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000781"
FT /product="rno-miR-9a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT miRNA 55..76
FT /accession="MIMAT0004708"
FT /product="rno-miR-9a-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [5]"
XX
SQ Sequence 89 BP; 25 A; 13 C; 23 G; 0 T; 28 other;
cgggguuggu uguuaucuuu gguuaucuag cuguaugagu gguguggagu cuucauaaag 60
cuagauaacc gaaaguaaaa auaacccca 89
//
ID rno-mir-9a-3 standard; RNA; RNO; 90 BP.
XX
AC MI0000839;
XX
DE Rattus norvegicus miR-9a-3 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314149; Mir9-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000781"
FT /product="rno-miR-9a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT miRNA 55..76
FT /accession="MIMAT0004708"
FT /product="rno-miR-9a-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [5]"
XX
SQ Sequence 90 BP; 26 A; 19 C; 21 G; 0 T; 24 other;
ggaggcccgu uucucucuuu gguuaucuag cuguaugagu gccacagagc cgucauaaag 60
cuagauaacc gaaaguagaa augacucuaa 90
//
ID rno-mir-9a-2 standard; RNA; RNO; 87 BP.
XX
AC MI0000840;
XX
DE Rattus norvegicus miR-9a-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313995; Mir9-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000781"
FT /product="rno-miR-9a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT miRNA 53..74
FT /accession="MIMAT0004708"
FT /product="rno-miR-9a-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [5]"
XX
SQ Sequence 87 BP; 26 A; 13 C; 19 G; 0 T; 29 other;
ggaagcgagu uguuaucuuu gguuaucuag cuguaugagu guauuggucu ucauaaagcu 60
agauaaccga aaguaaaaac uccuuca 87
//
ID rno-mir-10a standard; RNA; RNO; 110 BP.
XX
AC MI0000841;
XX
DE Rattus norvegicus miR-10a stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313996; Mir10a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0000782"
FT /product="rno-miR-10a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0001363"
FT miRNA 63..84
FT /accession="MIMAT0004709"
FT /product="rno-miR-10a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
XX
SQ Sequence 110 BP; 29 A; 21 C; 23 G; 0 T; 37 other;
gaccugucug ucuucuguau auacccugua gauccgaauu uguguaagga auuuuguggu 60
cacaaauucg uaucuagggg aauauguagu ugacauaaac acuccgcuca 110
//
ID rno-mir-10b standard; RNA; RNO; 109 BP.
XX
AC MI0000842;
XX
DE Rattus norvegicus miR-10b stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314226; Mir10b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..49
FT /accession="MIMAT0000783"
FT /product="rno-miR-10b-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000267"
FT miRNA 65..85
FT /accession="MIMAT0017092"
FT /product="rno-miR-10b-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 109 BP; 34 A; 21 C; 22 G; 0 T; 32 other;
ccaaaguugu aacguugucu auauauaccc uguagaaccg aauuugugug guacccacau 60
agucacagau ucgauucuag gggaauauau ggucgaugca aaaacuuca 109
//
ID rno-mir-15b standard; RNA; RNO; 98 BP.
XX
AC MI0000843;
XX
DE Rattus norvegicus miR-15b stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314150; Mir15b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0000784"
FT /product="rno-miR-15b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT miRNA 58..79
FT /accession="MIMAT0017093"
FT /product="rno-miR-15b-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 98 BP; 33 A; 17 C; 17 G; 0 T; 31 other;
uuggaaccuu aaaguacugu agcagcacau caugguuuac auacuacagu caagaugcga 60
aucauuauuu gcugcucuag aaauuuaagg aaauucau 98
//
ID rno-mir-16 standard; RNA; RNO; 95 BP.
XX
AC MI0000844;
XX
DE Rattus norvegicus miR-16 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313997; Mir16.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000785"
FT /product="rno-miR-16-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1,3], SOLiD [5]"
FT miRNA 59..79
FT /accession="MIMAT0017094"
FT /product="rno-miR-16-3p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
XX
SQ Sequence 95 BP; 30 A; 16 C; 19 G; 0 T; 30 other;
cauacuuguu ccgcucuagc agcacguaaa uauuggcgua gugaaauaaa uauuaaacac 60
caauauuauu gugcugcuuu agugugacag ggaua 95
//
ID rno-mir-17-1 standard; RNA; RNO; 84 BP.
XX
AC MI0000845;
XX
DE Rattus norvegicus miR-17-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313998; Mir17-1.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0000786"
FT /product="rno-miR-17-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000071"
FT miRNA 51..72
FT /accession="MIMAT0004710"
FT /product="rno-miR-17-1-3p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
XX
SQ Sequence 84 BP; 19 A; 14 C; 27 G; 0 T; 24 other;
gucaggauaa ugucaaagug cuuacagugc agguaguggu gugugcaucu acugcaguga 60
aggcacuugu ggcauugugc ugac 84
//
ID rno-mir-18a standard; RNA; RNO; 96 BP.
XX
AC MI0000846;
XX
DE Rattus norvegicus miR-18a stem-loop
XX
RN [1]
RX PUBMED; 12007417.
RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T;
RT "Identification of tissue-specific microRNAs from mouse";
RL Curr Biol. 12:735-739(2002).
XX
RN [2]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314227; Mir18a.
XX
CC This miRNA was predicted based on homology to a verified miRNA from mouse
CC [1]. Its expression in rat was later verified by cloning [2]. The mature
CC sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [3]. The ends of the miRNA may be offset with
CC respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0000787"
FT /product="rno-miR-18a-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], SOLiD [4]"
FT miRNA 58..78
FT /accession="MIMAT0017095"
FT /product="rno-miR-18a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 96 BP; 22 A; 19 C; 23 G; 0 T; 32 other;
ugcgugcuuu uuguucuaag gugcaucuag ugcagauagu gaaguagacu agcaucuacu 60
gcccuaagug cuccuucugg cauaagaagu uauguc 96
//
ID rno-mir-19b-1 standard; RNA; RNO; 87 BP.
XX
AC MI0000847;
XX
DE Rattus norvegicus miR-19b-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314186; Mir19b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0017096"
FT /product="rno-miR-19b-1-5p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
FT miRNA 54..76
FT /accession="MIMAT0000788"
FT /product="rno-miR-19b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
XX
SQ Sequence 87 BP; 19 A; 16 C; 22 G; 0 T; 30 other;
cacuggucua ugguuaguuu ugcagguuug cauccagcug uauaauauuc ugcugugcaa 60
auccaugcaa aacugacugu gguggug 87
//
ID rno-mir-19b-2 standard; RNA; RNO; 96 BP.
XX
AC MI0000848;
XX
DE Rattus norvegicus miR-19b-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100313999; Mir19b-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0017097"
FT /product="rno-miR-19b-2-5p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
FT miRNA 62..84
FT /accession="MIMAT0000788"
FT /product="rno-miR-19b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
XX
SQ Sequence 96 BP; 25 A; 14 C; 23 G; 0 T; 34 other;
acauugcuac uuacgguuag uuuugcagau uugcaguuca gcguauaugu ggauauaugg 60
cugugcaaau ccaugcaaaa cugauuguga ugaugu 96
//
ID rno-mir-19a standard; RNA; RNO; 82 BP.
XX
AC MI0000849;
XX
DE Rattus norvegicus miR-19a stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314151; Mir19a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..32
FT /accession="MIMAT0017098"
FT /product="rno-miR-19a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 49..71
FT /accession="MIMAT0000789"
FT /product="rno-miR-19a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000688"
XX
SQ Sequence 82 BP; 21 A; 17 C; 20 G; 0 T; 24 other;
gcagcccucu guucguuuug cauaguugca cuacaagaag aauguaguug ugcaaaucua 60
ugcaaaacug augguggccu gc 82
//
ID rno-mir-21 standard; RNA; RNO; 92 BP.
XX
AC MI0000850;
XX
DE Rattus norvegicus miR-21 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314000; Mir21.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0000790"
FT /product="rno-miR-21-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT miRNA 56..77
FT /accession="MIMAT0004711"
FT /product="rno-miR-21-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [5]"
XX
SQ Sequence 92 BP; 19 A; 19 C; 24 G; 0 T; 30 other;
uguaccaccu ugucggguag cuuaucagac ugauguugac uguugaaucu cauggcaaca 60
gcagucgaug ggcugucuga cauuuuggua uc 92
//
ID rno-mir-22 standard; RNA; RNO; 95 BP.
XX
AC MI0000851;
XX
DE Rattus norvegicus miR-22 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314001; Mir22.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0003152"
FT /product="rno-miR-22-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], SOLiD [5]"
FT miRNA 57..78
FT /accession="MIMAT0000791"
FT /product="rno-miR-22-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
XX
SQ Sequence 95 BP; 19 A; 28 C; 24 G; 0 T; 24 other;
accuggcuga gccgcaguag uucuucagug gcaagcuuua uguccugacc cagcuaaagc 60
ugccaguuga agaacuguug cccucugcca cuggc 95
//
ID rno-mir-23a standard; RNA; RNO; 75 BP.
XX
AC MI0000852;
XX
DE Rattus norvegicus miR-23a stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314228; Mir23a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0004712"
FT /product="rno-miR-23a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT miRNA 46..66
FT /accession="MIMAT0000792"
FT /product="rno-miR-23a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000571"
XX
SQ Sequence 75 BP; 15 A; 20 C; 23 G; 0 T; 17 other;
cggccggcug ggguuccugg ggaugggauu ugaugccagu cacaaaucac auugccaggg 60
auuuccaacu gaccc 75
//
ID rno-mir-23b standard; RNA; RNO; 97 BP.
XX
AC MI0000853;
XX
DE Rattus norvegicus miR-23b stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314002; Mir23b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0017099"
FT /product="rno-miR-23b-5p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
FT miRNA 58..78
FT /accession="MIMAT0000793"
FT /product="rno-miR-23b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000141"
XX
SQ Sequence 97 BP; 20 A; 26 C; 23 G; 0 T; 28 other;
cucaccugcu cuggcugcuu ggguuccugg caugcugauu ugugacuuga gauuaaaauc 60
acauugccag ggauuaccac gcaaccauga ccuuggc 97
//
ID rno-mir-24-1 standard; RNA; RNO; 68 BP.
XX
AC MI0000854;
XX
DE Rattus norvegicus miR-24-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314003; Mir24-1.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0003153"
FT /product="rno-miR-24-1-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Northern [2], SOLiD [5]"
FT miRNA 44..65
FT /accession="MIMAT0000794"
FT /product="rno-miR-24-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [2], SOLiD [5]"
FT /similarity="MI0000231"
XX
SQ Sequence 68 BP; 16 A; 19 C; 16 G; 0 T; 17 other;
cuccggugcc uacugagcug auaucaguuc ucauuucaca cacuggcuca guucagcagg 60
aacaggag 68
//
ID rno-mir-24-2 standard; RNA; RNO; 108 BP.
XX
AC MI0000855;
XX
DE Rattus norvegicus miR-24-2 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314278; Mir24-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0005441"
FT /product="rno-miR-24-2-5p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [5]"
FT miRNA 61..82
FT /accession="MIMAT0000794"
FT /product="rno-miR-24-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [2], SOLiD [5]"
FT /similarity="MI0000572"
XX
SQ Sequence 108 BP; 21 A; 36 C; 29 G; 0 T; 22 other;
gccucucccu gggcuccgcc uccugugccu acugagcuga aacaguugau uccagugcac 60
uggcucaguu cagcaggaac aggaguccag cccccauagg agcuggca 108
//
ID rno-mir-25 standard; RNA; RNO; 84 BP.
XX
AC MI0000856;
XX
DE Rattus norvegicus miR-25 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314004; Mir25.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0004713"
FT /product="rno-miR-25-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT miRNA 52..73
FT /accession="MIMAT0000795"
FT /product="rno-miR-25-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000082"
XX
SQ Sequence 84 BP; 13 A; 23 C; 31 G; 0 T; 17 other;
ggccaguguu gagaggcgga gacacgggca auugcuggac gcugcccugg gcauugcacu 60
ugucucgguc ugacagugcc ggcc 84
//
ID rno-mir-26a standard; RNA; RNO; 90 BP.
XX
AC MI0000857;
XX
DE Rattus norvegicus miR-26a stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314290; Mir26a.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000796"
FT /product="rno-miR-26a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000573"
FT miRNA 55..75
FT /accession="MIMAT0017100"
FT /product="rno-miR-26a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 90 BP; 16 A; 22 C; 31 G; 0 T; 21 other;
aaggccgugg ccuuguucaa guaauccagg auaggcugug caggucccaa ggggccuauu 60
cuugguuacu ugcacgggga cgcgggccug 90
//
ID rno-mir-26b standard; RNA; RNO; 85 BP.
XX
AC MI0000858;
XX
DE Rattus norvegicus miR-26b stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314229; Mir26b.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0000797"
FT /product="rno-miR-26b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000575"
FT miRNA 51..72
FT /accession="MIMAT0004714"
FT /product="rno-miR-26b-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
XX
SQ Sequence 85 BP; 12 A; 23 C; 28 G; 0 T; 22 other;
ugcccgggac ccaguucaag uaauucagga uagguugugg ugcuggccag ccuguucucc 60
auuacuuggc ucgggggccg gugcc 85
//
ID rno-mir-27b standard; RNA; RNO; 97 BP.
XX
AC MI0000859;
XX
DE Rattus norvegicus miR-27b stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314005; Mir27b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..42
FT /accession="MIMAT0017101"
FT /product="rno-miR-27b-5p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
FT miRNA 61..81
FT /accession="MIMAT0000798"
FT /product="rno-miR-27b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000440"
XX
SQ Sequence 97 BP; 23 A; 19 C; 27 G; 0 T; 28 other;
accucucuaa caaggugcag agcuuagcug auuggugaac agugauuggu uuccgcuuug 60
uucacagugg cuaaguucug caccugaaga gaaggug 97
//
ID rno-mir-27a standard; RNA; RNO; 87 BP.
XX
AC MI0000860;
XX
DE Rattus norvegicus miR-27a stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314006; Mir27a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0004715"
FT /product="rno-miR-27a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [4]"
FT miRNA 56..76
FT /accession="MIMAT0000799"
FT /product="rno-miR-27a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000578"
XX
SQ Sequence 87 BP; 16 A; 24 C; 27 G; 0 T; 20 other;
uggccugugg agcagggcuu agcugcuugu gagcaagguc uacagcaaag ucguguucac 60
aguggcuaag uuccgccccc uggaccc 87
//
ID rno-mir-28 standard; RNA; RNO; 86 BP.
XX
AC MI0000861;
XX
DE Rattus norvegicus miR-28 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314152; Mir28.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000800"
FT /product="rno-miR-28-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000086"
FT miRNA 54..75
FT /accession="MIMAT0004716"
FT /product="rno-miR-28-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
XX
SQ Sequence 86 BP; 16 A; 25 C; 21 G; 0 T; 24 other;
ggucccuacc cgcaaggagc ucacagucua uugaguuccu uuucugauuc ucccacuaga 60
uugugagcuc cuggagggca ggcacu 86
//
ID rno-mir-29b-2 standard; RNA; RNO; 81 BP.
XX
AC MI0000862;
XX
DE Rattus norvegicus miR-29b-2 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314007; Mir29b-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004717"
FT /product="rno-miR-29b-5p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [5]"
FT miRNA 52..74
FT /accession="MIMAT0000801"
FT /product="rno-miR-29b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT /similarity="MI0000107"
XX
SQ Sequence 81 BP; 17 A; 14 C; 18 G; 0 T; 32 other;
cuucuggaag cugguuucac augguggcuu agauuuuucc aucuuuguau cuagcaccau 60
uugaaaucag uguuuuagga g 81
//
ID rno-mir-29a standard; RNA; RNO; 88 BP.
XX
AC MI0000863;
XX
DE Rattus norvegicus miR-29a stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314230; Mir29a.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0004718"
FT /product="rno-miR-29a-5p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [5]"
FT miRNA 54..75
FT /accession="MIMAT0000802"
FT /product="rno-miR-29a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
XX
SQ Sequence 88 BP; 24 A; 14 C; 20 G; 0 T; 30 other;
accccuuaga ggaugacuga uuucuuuugg uguucagagu caauagaauu uucuagcacc 60
aucugaaauc gguuauaaug auugggga 88
//
ID rno-mir-29b-1 standard; RNA; RNO; 81 BP.
XX
AC MI0000864;
XX
DE Rattus norvegicus miR-29b-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314008; Mir29b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0005445"
FT /product="rno-miR-29b-1-5p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [5]"
FT miRNA 51..73
FT /accession="MIMAT0000801"
FT /product="rno-miR-29b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT /similarity="MI0000105"
XX
SQ Sequence 81 BP; 19 A; 10 C; 21 G; 0 T; 31 other;
cuucaggaag cugguuucau auggugguuu agauuuaaau agugauuguc uagcaccauu 60
ugaaaucagu guucuuggug g 81
//
ID rno-mir-29c-1 standard; RNA; RNO; 88 BP.
XX
AC MI0000865;
XX
DE Rattus norvegicus miR-29c-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314187; Mir29c.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0003154"
FT /product="rno-miR-29c-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [5]"
FT miRNA 54..75
FT /accession="MIMAT0000803"
FT /product="rno-miR-29c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
FT /similarity="MI0000577"
XX
SQ Sequence 88 BP; 18 A; 17 C; 22 G; 0 T; 31 other;
aucucuuaca caggcugacc gauuucuccu gguguucaga gucuguuuuu gucuagcacc 60
auuugaaauc gguuaugaug uaggggga 88
//
ID rno-mir-30c-1 standard; RNA; RNO; 89 BP.
XX
AC MI0000866;
XX
DE Rattus norvegicus miR-30c-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [6]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314009; Mir30c-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0000804"
FT /product="rno-miR-30c-5p"
FT /evidence=experimental
FT /experiment="cloned [1-5], SOLiD [6]"
FT miRNA 56..77
FT /accession="MIMAT0004719"
FT /product="rno-miR-30c-1-3p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [6]"
XX
SQ Sequence 89 BP; 18 A; 19 C; 25 G; 0 T; 27 other;
accauguugu agugugugua aacauccuac acucucagcu gugagcucaa gguggcuggg 60
agaggguugu uuacuccuuc ugccaugga 89
//
ID rno-mir-30e standard; RNA; RNO; 92 BP.
XX
AC MI0000867;
XX
DE Rattus norvegicus miR-30e stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314153; Mir30e.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000805"
FT /product="rno-miR-30e-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000259"
FT miRNA 59..80
FT /accession="MIMAT0004720"
FT /product="rno-miR-30e-3p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
XX
SQ Sequence 92 BP; 20 A; 18 C; 29 G; 0 T; 25 other;
gggcagucuu ugcuacugua aacauccuug acuggaagcu guaagguguu gagaggagcu 60
uucagucgga uguuuacagc ggcaggcugc ca 92
//
ID rno-mir-30b standard; RNA; RNO; 87 BP.
XX
AC MI0000868;
XX
DE Rattus norvegicus miR-30b stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314231; Mir30b.
XX
CC Landgraf et al. show that miRNA sequences from both arms of this hairpin
CC precursor are similarly expressed [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000806"
FT /product="rno-miR-30b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1,3], SOLiD [5]"
FT miRNA 54..75
FT /accession="MIMAT0004721"
FT /product="rno-miR-30b-3p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [5]"
XX
SQ Sequence 87 BP; 19 A; 18 C; 22 G; 0 T; 28 other;
ccgaguuuca guucauguaa acauccuaca cucagcuguc auacaugagu uggcugggau 60
guggauguuu acgucagcug ucuugga 87
//
ID rno-mir-30d standard; RNA; RNO; 82 BP.
XX
AC MI0000869;
XX
DE Rattus norvegicus miR-30d stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314010; Mir30d.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0000807"
FT /product="rno-miR-30d-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT miRNA 52..73
FT /accession="MIMAT0004722"
FT /product="rno-miR-30d-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
XX
SQ Sequence 82 BP; 19 A; 22 C; 19 G; 0 T; 22 other;
aagucugugu cuguaaacau ccccgacugg aagcuguaag ccacagccaa gcuuucaguc 60
agauguuugc ugcuacuggc uc 82
//
ID rno-mir-30a standard; RNA; RNO; 71 BP.
XX
AC MI0000870;
XX
DE Rattus norvegicus miR-30a stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314011; Mir30a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000808"
FT /product="rno-miR-30a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000144"
FT miRNA 47..68
FT /accession="MIMAT0000809"
FT /product="rno-miR-30a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000144"
XX
SQ Sequence 71 BP; 18 A; 17 C; 19 G; 0 T; 17 other;
gcaacuguaa acauccucga cuggaagcug ugaagccaca aaugggcuuu cagucggaug 60
uuugcagcug c 71
//
ID rno-mir-30c-2 standard; RNA; RNO; 84 BP.
XX
AC MI0000871;
XX
DE Rattus norvegicus miR-30c-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [6]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314012; Mir30c-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0000804"
FT /product="rno-miR-30c-5p"
FT /evidence=experimental
FT /experiment="cloned [1-5], SOLiD [6]"
FT miRNA 54..75
FT /accession="MIMAT0005442"
FT /product="rno-miR-30c-2-3p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [6]"
XX
SQ Sequence 84 BP; 25 A; 18 C; 19 G; 0 T; 22 other;
gagugacaga uacuguaaac auccuacacu cucagcugug aaaaguaaga aagcugggag 60
aaggcuguuu acucucucug ccuu 84
//
ID rno-mir-31a standard; RNA; RNO; 106 BP.
XX
AC MI0000872;
XX
DE Rattus norvegicus miR-31a stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314232; Mir31.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..49
FT /accession="MIMAT0000810"
FT /product="rno-miR-31a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000579"
FT miRNA 64..86
FT /accession="MIMAT0017102"
FT /product="rno-miR-31a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 106 BP; 27 A; 25 C; 27 G; 0 T; 27 other;
ugcuccugaa acuuggaacu ggagaggagg caagaugcug gcauagcugu ugaacugaga 60
accugcuaug ccaacauauu gccaucuuuc cugucugaca gcagcu 106
//
ID rno-mir-32 standard; RNA; RNO; 70 BP.
XX
AC MI0000873;
XX
DE Rattus norvegicus miR-32 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314013; Mir32.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000811"
FT /product="rno-miR-32-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000090"
FT miRNA 46..67
FT /accession="MIMAT0017103"
FT /product="rno-miR-32-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 70 BP; 16 A; 12 C; 17 G; 0 T; 25 other;
ggggauauug cacauuacua aguugcaugu ugucacggcc ucaaugcaau uuagugugug 60
ugauauucuc 70
//
ID rno-mir-33 standard; RNA; RNO; 69 BP.
XX
AC MI0000874;
XX
DE Rattus norvegicus miR-33 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314214; Mir33.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0000812"
FT /product="rno-miR-33-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000091"
FT miRNA 46..66
FT /accession="MIMAT0017104"
FT /product="rno-miR-33-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 69 BP; 12 A; 16 C; 19 G; 0 T; 22 other;
ccguggugca uuguaguugc auugcauguu cuggcaguac cugugcaaug uuuccacagu 60
gcaucacgg 69
//
ID rno-mir-34b standard; RNA; RNO; 84 BP.
XX
AC MI0000875;
XX
DE Rattus norvegicus miR-34b stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314188; Mir34b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0000813"
FT /product="rno-miR-34b-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0000404"
FT miRNA 51..72
FT /accession="MIMAT0017105"
FT /product="rno-miR-34b-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 84 BP; 22 A; 19 C; 21 G; 0 T; 22 other;
gugcucgguu uguaggcagu guaauuagcu gauuguagug cggugcugac aaucacuaac 60
uccacugcca ucaaaacaag gcac 84
//
ID rno-mir-34c standard; RNA; RNO; 77 BP.
XX
AC MI0000876;
XX
DE Rattus norvegicus miR-34c stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314014; Mir34c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0000814"
FT /product="rno-miR-34c-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000403"
FT miRNA 46..67
FT /accession="MIMAT0004723"
FT /product="rno-miR-34c-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 77 BP; 27 A; 16 C; 15 G; 0 T; 19 other;
agucuaguua cuaggcagug uaguuagcug auugcuaaua guaccaauca cuaaccacac 60
agccagguaa aaagacu 77
//
ID rno-mir-34a standard; RNA; RNO; 102 BP.
XX
AC MI0000877;
XX
DE Rattus norvegicus miR-34a stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314015; Mir34a.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0000815"
FT /product="rno-miR-34a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT miRNA 64..85
FT /accession="MIMAT0017106"
FT /product="rno-miR-34a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 102 BP; 23 A; 18 C; 29 G; 0 T; 32 other;
ccggcuguga guaauucuuu ggcagugucu uagcugguug uugugaguau uagcuaagga 60
agcaaucagc aaguauacug cccuagaagu gcugcacguu gu 102
//
ID rno-mir-92a-1 standard; RNA; RNO; 78 BP.
XX
AC MI0000878;
XX
DE Rattus norvegicus miR-92a-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314233; Mir92a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0017107"
FT /product="rno-miR-92a-1-5p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
FT miRNA 48..68
FT /accession="MIMAT0000816"
FT /product="rno-miR-92a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000719"
XX
SQ Sequence 78 BP; 11 A; 15 C; 21 G; 0 T; 31 other;
cuuucuacac agguugggau uugucgcaau gcuguguuuc uguauaguau ugcacuuguc 60
ccggccuguu gaguuugg 78
//
ID rno-mir-92a-2 standard; RNA; RNO; 92 BP.
XX
AC MI0000879;
XX
DE Rattus norvegicus miR-92a-2 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314016; Mir92a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0017108"
FT /product="rno-miR-92a-2-5p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
FT miRNA 55..75
FT /accession="MIMAT0000816"
FT /product="rno-miR-92a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000580"
XX
SQ Sequence 92 BP; 25 A; 17 C; 25 G; 0 T; 25 other;
ugcccauuca uccacaggug gggauuagug ccauuacuug uguuagauaa aaaguauugc 60
acuugucccg gccugaggaa gaaaagaggg uu 92
//
ID rno-mir-93 standard; RNA; RNO; 87 BP.
XX
AC MI0000880;
XX
DE Rattus norvegicus miR-93 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314154; Mir93.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0000817"
FT /product="rno-miR-93-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT miRNA 53..75
FT /accession="MIMAT0017109"
FT /product="rno-miR-93-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 87 BP; 17 A; 26 C; 25 G; 0 T; 19 other;
agucaugggg gcuccaaagu gcuguucgug cagguagugc auugccugac cuacugcuga 60
gcuagcacuu cccgagcccc caggaca 87
//
ID rno-mir-96 standard; RNA; RNO; 106 BP.
XX
AC MI0000881;
XX
DE Rattus norvegicus miR-96 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314017; Mir96.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0000818"
FT /product="rno-miR-96-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000583"
FT miRNA 66..87
FT /accession="MIMAT0017110"
FT /product="rno-miR-96-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 106 BP; 20 A; 28 C; 27 G; 0 T; 31 other;
ccaguaccau cugcuuggcc gauuuuggca cuagcacauu uuugcuugug ucucuccgcu 60
cugagcaauc augugcagug ccaauauggg aaaagcgggc ugcugc 106
//
ID rno-mir-98 standard; RNA; RNO; 108 BP.
XX
AC MI0000882;
XX
DE Rattus norvegicus miR-98 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314018; Mir98.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000819"
FT /product="rno-miR-98-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT miRNA 74..94
FT /accession="MIMAT0017111"
FT /product="rno-miR-98-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 108 BP; 26 A; 17 C; 31 G; 0 T; 34 other;
cugcacaugc uggggugagg uaguaaguug uauuguugug ggguagggau uuuaggcccc 60
aauaagaaga uaacuauaca acuuacuacu uucccuggug uguggcau 108
//
ID rno-mir-99a standard; RNA; RNO; 81 BP.
XX
AC MI0000883;
XX
DE Rattus norvegicus miR-99a stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [6]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314019; Mir99a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0000820"
FT /product="rno-miR-99a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-5], SOLiD [6]"
FT miRNA 50..71
FT /accession="MIMAT0004724"
FT /product="rno-miR-99a-3p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [6]"
XX
SQ Sequence 81 BP; 16 A; 19 C; 24 G; 0 T; 22 other;
cccauuggca uaaacccgua gauccgaucu uguggugaag uggaccgcac aagcucguuu 60
cuaugggucu guggcagugu g 81
//
ID rno-mir-99b standard; RNA; RNO; 70 BP.
XX
AC MI0000884;
XX
DE Rattus norvegicus miR-99b stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314189; Mir99b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000821"
FT /product="rno-miR-99b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1,3], SOLiD [5]"
FT miRNA 45..66
FT /accession="MIMAT0004725"
FT /product="rno-miR-99b-3p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [5]"
XX
SQ Sequence 70 BP; 10 A; 26 C; 21 G; 0 T; 13 other;
ggcacccacc cguagaaccg accuugcggg gccuucgccg cacacaagcu cgugucugug 60
gguccguguc 70
//
ID rno-mir-100 standard; RNA; RNO; 80 BP.
XX
AC MI0000885;
XX
DE Rattus norvegicus miR-100 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314234; Mir100.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0000822"
FT /product="rno-miR-100-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], SOLiD [3]"
FT miRNA 48..66
FT /accession="MIMAT0017112"
FT /product="rno-miR-100-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 80 BP; 18 A; 20 C; 19 G; 0 T; 23 other;
ccuguugcca caaacccgua gauccgaacu ugugcugacc augcacacaa gcuugugucu 60
auagguaugu gucuguuagg 80
//
ID rno-mir-101a standard; RNA; RNO; 75 BP.
XX
AC MI0000886;
XX
DE Rattus norvegicus miR-101a stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314279; Mir101a.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0004726"
FT /product="rno-miR-101a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT miRNA 47..67
FT /accession="MIMAT0000823"
FT /product="rno-miR-101a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000103"
XX
SQ Sequence 75 BP; 19 A; 16 C; 19 G; 0 T; 21 other;
ugcccuggcu caguuaucac agugcugaug cuguccauuc uaaagguaca guacugugau 60
aacugaagga uggca 75
//
ID rno-mir-103-2 standard; RNA; RNO; 86 BP.
XX
AC MI0000887;
XX
DE Rattus norvegicus miR-103-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314020; Mir103-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..31
FT /accession="MIMAT0017113"
FT /product="rno-miR-103-2-5p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
FT miRNA 52..74
FT /accession="MIMAT0000824"
FT /product="rno-miR-103-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1-2], SOLiD [4]"
XX
SQ Sequence 86 BP; 22 A; 19 C; 20 G; 0 T; 25 other;
gucuucgugc uuucagcuuc uuuacagugc ugccuuguag cauucagguc aagcagcauu 60
guacagggcu augaaagaac caagaa 86
//
ID rno-mir-103-1 standard; RNA; RNO; 86 BP.
XX
AC MI0000888;
XX
DE Rattus norvegicus miR-103-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314021; Mir103-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0017114"
FT /product="rno-miR-103-1-5p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
FT miRNA 52..74
FT /accession="MIMAT0000824"
FT /product="rno-miR-103-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1,3], SOLiD [5]"
XX
SQ Sequence 86 BP; 18 A; 20 C; 21 G; 0 T; 27 other;
uucuuacugc ccucggcuuc uuuacagugc ugccuuguug cauauggauc aagcagcauu 60
guacagggcu augaaggcau ugagac 86
//
ID rno-mir-106b standard; RNA; RNO; 82 BP.
XX
AC MI0000889;
XX
DE Rattus norvegicus miR-106b stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314235; Mir106b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0000825"
FT /product="rno-miR-106b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000407"
FT miRNA 52..73
FT /accession="MIMAT0004727"
FT /product="rno-miR-106b-3p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
XX
SQ Sequence 82 BP; 14 A; 22 C; 25 G; 0 T; 21 other;
ccugcuggga cuaaagugcu gacagugcag auaguggucc ucucugugcu accgcacugu 60
ggguacuugc ugcuccagca gg 82
//
ID rno-mir-107 standard; RNA; RNO; 87 BP.
XX
AC MI0000890;
XX
DE Rattus norvegicus miR-107 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314022; Mir107.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0017115"
FT /product="rno-miR-107-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 52..74
FT /accession="MIMAT0000826"
FT /product="rno-miR-107-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000114"
XX
SQ Sequence 87 BP; 20 A; 19 C; 21 G; 0 T; 27 other;
uucucucugc uuuaagcuuc uuuacagugu ugccuugugg cauggaguuc aagcagcauu 60
guacagggcu aucaaagcac agagagc 87
//
ID rno-mir-122 standard; RNA; RNO; 85 BP.
XX
AC MI0000891;
XX
DE Rattus norvegicus miR-122 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314023; Mir122.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000827"
FT /product="rno-miR-122-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000256"
FT miRNA 51..69
FT /accession="MIMAT0017116"
FT /product="rno-miR-122-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 85 BP; 25 A; 22 C; 18 G; 0 T; 20 other;
ccuuagcaga gcucuggagu gugacaaugg uguuuguguc caaaacauca aacgccauca 60
ucacacuaaa cagcuacugc uaggc 85
//
ID rno-mir-124-3 standard; RNA; RNO; 87 BP.
XX
AC MI0000892;
XX
DE Rattus norvegicus miR-124-3 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314155; Mir124-3.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0004728"
FT /product="rno-miR-124-5p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
FT miRNA 53..72
FT /accession="MIMAT0000828"
FT /product="rno-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], SOLiD [4]"
XX
SQ Sequence 87 BP; 20 A; 23 C; 24 G; 0 T; 20 other;
ugagggcccc ucugcguguu cacagcggac cuugauuuaa ugucuauaca auuaaggcac 60
gcggugaaug ccaagagagg cgccucc 87
//
ID rno-mir-124-1 standard; RNA; RNO; 85 BP.
XX
AC MI0000893;
XX
DE Rattus norvegicus miR-124-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314291; Mir124-1.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0004728"
FT /product="rno-miR-124-5p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
FT miRNA 53..72
FT /accession="MIMAT0000828"
FT /product="rno-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], SOLiD [4]"
XX
SQ Sequence 85 BP; 21 A; 21 C; 22 G; 0 T; 21 other;
aggccucucu cuccguguuc acagcggacc uugauuuaaa uguccauaca auuaaggcac 60
gcggugaaug ccaagaaugg ggcug 85
//
ID rno-mir-124-2 standard; RNA; RNO; 109 BP.
XX
AC MI0000894;
XX
DE Rattus norvegicus miR-124-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314024; Mir124-2.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0004728"
FT /product="rno-miR-124-5p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
FT miRNA 62..81
FT /accession="MIMAT0000828"
FT /product="rno-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], SOLiD [4]"
XX
SQ Sequence 109 BP; 30 A; 27 C; 27 G; 0 T; 25 other;
aucaagauca gagacucugc ucuccguguu cacagcggac cuugauuuaa ugucauacaa 60
uuaaggcacg cggugaaugc caagagcgga gccuacggcu gcacuugaa 109
//
ID rno-mir-125a standard; RNA; RNO; 85 BP.
XX
AC MI0000895;
XX
DE Rattus norvegicus miR-125a stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314236; Mir125a.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0000829"
FT /product="rno-miR-125a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000151"
FT miRNA 53..74
FT /accession="MIMAT0004729"
FT /product="rno-miR-125a-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
XX
SQ Sequence 85 BP; 11 A; 25 C; 30 G; 0 T; 19 other;
ugccggccuc ugggucccug agacccuuua accugugagg acguccaggg ucacagguga 60
gguucuuggg agccuggcgc cuggc 85
//
ID rno-mir-125b-1 standard; RNA; RNO; 87 BP.
XX
AC MI0000896;
XX
DE Rattus norvegicus miR-125b-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [6]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314156; Mir125b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000830"
FT /product="rno-miR-125b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-5], Northern [1,3], SOLiD [6]"
FT miRNA 55..76
FT /accession="MIMAT0004730"
FT /product="rno-miR-125b-1-3p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [6]"
XX
SQ Sequence 87 BP; 14 A; 25 C; 23 G; 0 T; 25 other;
ugcgcucccc ucagucccug agacccuaac uugugauguu uaccguuuaa auccacgggu 60
uaggcucuug ggagcugcga gucgugc 87
//
ID rno-mir-125b-2 standard; RNA; RNO; 88 BP.
XX
AC MI0000897;
XX
DE Rattus norvegicus miR-125b-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [6]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314025; Mir125b-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000830"
FT /product="rno-miR-125b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-5], Northern [1,3], SOLiD [6]"
FT miRNA 56..77
FT /accession="MIMAT0026467"
FT /product="rno-miR-125b-2-3p"
FT /evidence=experimental
FT /experiment="cloned [4], SOLiD [6]"
XX
SQ Sequence 88 BP; 22 A; 21 C; 22 G; 0 T; 23 other;
accagacuuu uccuaguccc ugagacccua acuugugagg uauuuuagua acaucacaag 60
ucaggcucuu gggaccuagg cggagagg 88
//
ID rno-mir-126a standard; RNA; RNO; 73 BP.
XX
AC MI0000898;
XX
DE Rattus norvegicus miR-126a stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314237; Mir126.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0000831"
FT /product="rno-miR-126a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000153"
FT miRNA 46..67
FT /accession="MIMAT0000832"
FT /product="rno-miR-126a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000153"
XX
SQ Sequence 73 BP; 19 A; 16 C; 16 G; 0 T; 22 other;
ugacagcaca uuauuacuuu ugguacgcgc ugugacacuu caaacucgua ccgugaguaa 60
uaaugcgugg uca 73
//
ID rno-mir-127 standard; RNA; RNO; 97 BP.
XX
AC MI0000899;
XX
DE Rattus norvegicus miR-127 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314190; Mir127.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0017117"
FT /product="rno-miR-127-5p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
FT miRNA 57..78
FT /accession="MIMAT0000833"
FT /product="rno-miR-127-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
XX
SQ Sequence 97 BP; 20 A; 25 C; 25 G; 0 T; 27 other;
uuugaucacu gucuccagcc ugcugaagcu cagagggcuc ugauucagaa agaucaucgg 60
auccgucuga gcuuggcugg ucggaagucu caucauc 97
//
ID rno-mir-128-1 standard; RNA; RNO; 82 BP.
XX
AC MI0000900;
XX
DE Rattus norvegicus miR-128-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314026; Mir128-1.
XX
CC The most commonly cloned mature sequences derived from the previously
CC annotated mir-128a and mir-128b were shown by Landgraf et al to be
CC identical [3]. The sequences are therefore renamed mir-128-1 and
CC mir-128-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0017118"
FT /product="rno-miR-128-1-5p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
FT miRNA 50..70
FT /accession="MIMAT0000834"
FT /product="rno-miR-128-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000155"
XX
SQ Sequence 82 BP; 13 A; 19 C; 22 G; 0 T; 28 other;
ugagcuguug gauucggggc cguagcacug ucugagaggu uuacauuucu cacagugaac 60
cggucucuuu uucagcugcu uc 82
//
ID rno-mir-128-2 standard; RNA; RNO; 84 BP.
XX
AC MI0000901;
XX
DE Rattus norvegicus miR-128-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314027; Mir128-2.
XX
CC The most commonly cloned mature sequences derived from the previously
CC annotated mir-128a and mir-128b were shown by Landgraf et al to be
CC identical [3]. The sequences are therefore renamed mir-128-1 and
CC mir-128-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0017119"
FT /product="rno-miR-128-2-5p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
FT miRNA 52..72
FT /accession="MIMAT0000834"
FT /product="rno-miR-128-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1], SOLiD [5]"
XX
SQ Sequence 84 BP; 17 A; 18 C; 29 G; 0 T; 20 other;
ugugcagugg gaaggggggc cgaugcacug uaagagagug aguagcaggu cucacaguga 60
accggucucu uucccuacug uguc 84
//
ID rno-mir-129-1 standard; RNA; RNO; 72 BP.
XX
AC MI0000902;
XX
DE Rattus norvegicus miR-129-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314157; Mir129-1.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0000600"
FT /product="rno-miR-129-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000222"
FT miRNA 49..67
FT /accession="MIMAT0017120"
FT /product="rno-miR-129-1-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 72 BP; 13 A; 19 C; 17 G; 0 T; 23 other;
ugggucuuuu ugcggucugg gcuugcuguu cucuccacag uagucaggaa gcccuuaccc 60
caaaaaguau cu 72
//
ID rno-mir-130a standard; RNA; RNO; 88 BP.
XX
AC MI0000903;
XX
DE Rattus norvegicus miR-130a stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314238; Mir130a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0017121"
FT /product="rno-miR-130a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
FT miRNA 55..76
FT /accession="MIMAT0000836"
FT /product="rno-miR-130a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1,3], SOLiD [5]"
XX
SQ Sequence 88 BP; 17 A; 21 C; 24 G; 0 T; 26 other;
ugcugcuggc cggagcucuu uucacauugu gcuacugucu acacguguac cgagcagugc 60
aauguuaaaa gggcaucggc cuuguagu 88
//
ID rno-mir-130b standard; RNA; RNO; 82 BP.
XX
AC MI0000904;
XX
DE Rattus norvegicus miR-130b stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314028; Mir130b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0017122"
FT /product="rno-miR-130b-5p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
FT miRNA 51..72
FT /accession="MIMAT0000837"
FT /product="rno-miR-130b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1-2], SOLiD [4]"
XX
SQ Sequence 82 BP; 15 A; 22 C; 25 G; 0 T; 20 other;
ggcuugcugg acacucuuuc ccuguugcac uacugugggc cucugggaag cagugcaaug 60
augaaagggc auccgucagg cc 82
//
ID rno-mir-132 standard; RNA; RNO; 101 BP.
XX
AC MI0000905;
XX
DE Rattus norvegicus miR-132 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314029; Mir132.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0017123"
FT /product="rno-miR-132-5p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
FT miRNA 59..80
FT /accession="MIMAT0000838"
FT /product="rno-miR-132-3p"
FT /evidence=experimental
FT /experiment="cloned [1-4], SOLiD [5]"
XX
SQ Sequence 101 BP; 17 A; 38 C; 28 G; 0 T; 18 other;
ccgcccccgc gucuccaggg caaccguggc uuucgauugu uacuguggga accggaggua 60
acagucuaca gccauggucg ccccgcagca cgcccacgcu c 101
//
ID rno-mir-133a standard; RNA; RNO; 87 BP.
XX
AC MI0000906;
XX
DE Rattus norvegicus miR-133a stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314030; Mir133a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0017124"
FT /product="rno-miR-133a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 52..73
FT /accession="MIMAT0000839"
FT /product="rno-miR-133a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000820"
XX
SQ Sequence 87 BP; 24 A; 21 C; 17 G; 0 T; 25 other;
caaugcuuug cuaaagcugg uaaaauggaa ccaaaucgcc ucuucaaugg auuugguccc 60
cuucaaccag cuguagcuau gcauuga 87
//
ID rno-mir-134 standard; RNA; RNO; 73 BP.
XX
AC MI0000907;
XX
DE Rattus norvegicus miR-134 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314191; Mir134.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0000840"
FT /product="rno-miR-134-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000474"
FT miRNA 47..68
FT /accession="MIMAT0017125"
FT /product="rno-miR-134-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 73 BP; 12 A; 22 C; 22 G; 0 T; 17 other;
cagggugugu gacugguuga ccagaggggc gugcacuuug uucacccugu gggccaccua 60
gucaccaacc cuc 73
//
ID rno-mir-135a standard; RNA; RNO; 100 BP.
XX
AC MI0000908;
XX
DE Rattus norvegicus miR-135a stem-loop
XX
RN [1]
RX PUBMED; 16471176.
RA Naraba H, Iwai N;
RT "Assessment of the microRNA system in salt-sensitive hypertension";
RL Hypertens Res. 28:819-826(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314280; Mir135a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0000841"
FT /product="rno-miR-135a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000715"
FT miRNA 62..83
FT /accession="MIMAT0004732"
FT /product="rno-miR-135a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
XX
SQ Sequence 100 BP; 32 A; 14 C; 19 G; 0 T; 35 other;
agauaaauuc acucuagugc uuuauggcuu uuuauuccua ugugaucgua auaaagucuc 60
auguagggau ggaagccaug aaauacauug ugaaaauuca 100
//
ID rno-mir-136 standard; RNA; RNO; 82 BP.
XX
AC MI0000909;
XX
DE Rattus norvegicus miR-136 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314239; Mir136.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0000842"
FT /product="rno-miR-136-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000475"
FT miRNA 49..70
FT /accession="MIMAT0004733"
FT /product="rno-miR-136-3p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
XX
SQ Sequence 82 BP; 17 A; 18 C; 19 G; 0 T; 28 other;
ugagcccucg gaggacucca uuuguuuuga ugauggauuc uuaagcucca ucaucgucuc 60
aaaugagucu ucagaggguu cu 82
//
ID rno-mir-137 standard; RNA; RNO; 102 BP.
XX
AC MI0000910;
XX
DE Rattus norvegicus miR-137 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314031; Mir137.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0017126"
FT /product="rno-miR-137-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 59..81
FT /accession="MIMAT0000843"
FT /product="rno-miR-137-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000163"
XX
SQ Sequence 102 BP; 22 A; 20 C; 31 G; 0 T; 29 other;
ggcccucuga cucucuucgg ugacggguau ucuugggugg auaauacgga uuacguuguu 60
auugcuuaag aauacgcgua gucgaggaga guaccagcgg ca 102
//
ID rno-mir-138-2 standard; RNA; RNO; 82 BP.
XX
AC MI0000911;
XX
DE Rattus norvegicus miR-138-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314032; Mir138-2.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0000844"
FT /product="rno-miR-138-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1], SOLiD [5]"
FT miRNA 56..76
FT /accession="MIMAT0017127"
FT /product="rno-miR-138-2-3p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
XX
SQ Sequence 82 BP; 16 A; 25 C; 22 G; 0 T; 19 other;
guugcugcag cugguguugu gaaucaggcc gacgagcaac gcauccucuu acccggcuau 60
uucacgacac caggguugca cc 82
//
ID rno-mir-138-1 standard; RNA; RNO; 99 BP.
XX
AC MI0000912;
XX
DE Rattus norvegicus miR-138-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314033; Mir138-1.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0000844"
FT /product="rno-miR-138-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1], SOLiD [5]"
FT miRNA 61..82
FT /accession="MIMAT0004734"
FT /product="rno-miR-138-1-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [5]"
XX
SQ Sequence 99 BP; 21 A; 25 C; 30 G; 0 T; 23 other;
cucuggcaug guguuguggg acagcuggug uugugaauca ggccguugcc aaucagagaa 60
cggcuacuuc acaacaccag ggucucacug cacugcagg 99
//
ID rno-mir-139 standard; RNA; RNO; 68 BP.
XX
AC MI0000913;
XX
DE Rattus norvegicus miR-139 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314240; Mir139.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000845"
FT /product="rno-miR-139-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000693"
FT miRNA 43..64
FT /accession="MIMAT0004735"
FT /product="rno-miR-139-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
XX
SQ Sequence 68 BP; 11 A; 16 C; 24 G; 0 T; 17 other;
guguauucua cagugcacgu gucuccagug uggcucggag gcuggagacg cggcccuguu 60
ggaguaac 68
//
ID rno-mir-141 standard; RNA; RNO; 94 BP.
XX
AC MI0000914;
XX
DE Rattus norvegicus miR-141 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314215; Mir141.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0017128"
FT /product="rno-miR-141-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 58..79
FT /accession="MIMAT0000846"
FT /product="rno-miR-141-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000457"
XX
SQ Sequence 94 BP; 19 A; 23 C; 27 G; 0 T; 25 other;
ggcugacucu gaguccaucu uccagugcag uguuggaugg uugaaguacg aagcuccuaa 60
cacugucugg uaaagauggc ccccggguca guuc 94
//
ID rno-mir-142 standard; RNA; RNO; 87 BP.
XX
AC MI0000915;
XX
DE Rattus norvegicus miR-142 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314034; Mir142.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0000847"
FT /product="rno-miR-142-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], SOLiD [4]"
FT /similarity="MI0000167"
FT miRNA 52..74
FT /accession="MIMAT0000848"
FT /product="rno-miR-142-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000458"
XX
SQ Sequence 87 BP; 25 A; 16 C; 23 G; 0 T; 23 other;
gacagugcag ucacccauaa aguagaaagc acuacuaaca gcacuggagg guguaguguu 60
uccuacuuua uggaugagug uacugug 87
//
ID rno-mir-143 standard; RNA; RNO; 105 BP.
XX
AC MI0000916;
XX
DE Rattus norvegicus miR-143 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314035; Mir143.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..46
FT /accession="MIMAT0017129"
FT /product="rno-miR-143-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 60..81
FT /accession="MIMAT0000849"
FT /product="rno-miR-143-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000459"
XX
SQ Sequence 105 BP; 21 A; 24 C; 37 G; 0 T; 23 other;
gcggagcgcc ugucucccag ccugaggugc agugcugcau cucuggucag uugggagucu 60
gagaugaagc acuguagcuc aggaagggag aagauguucu gcagc 105
//
ID rno-mir-144 standard; RNA; RNO; 83 BP.
XX
AC MI0000917;
XX
DE Rattus norvegicus miR-144 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314192; Mir144.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0017130"
FT /product="rno-miR-144-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 50..69
FT /accession="MIMAT0000850"
FT /product="rno-miR-144-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000168"
XX
SQ Sequence 83 BP; 21 A; 15 C; 22 G; 0 T; 25 other;
gggccuuggc ugggauauca ucauauacug uaaguuugug augagacacu acaguauaga 60
ugauguacua gucuggguac ccc 83
//
ID rno-mir-145 standard; RNA; RNO; 88 BP.
XX
AC MI0000918;
XX
DE Rattus norvegicus miR-145 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314036; Mir145.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0000851"
FT /product="rno-miR-145-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000461"
FT miRNA 54..74
FT /accession="MIMAT0017131"
FT /product="rno-miR-145-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 88 BP; 17 A; 22 C; 22 G; 0 T; 27 other;
caccuugucc ucacggucca guuuucccag gaaucccuug gaugcuaaga uggggauucc 60
uggaaauacu guucuugagg ucauggcu 88
//
ID rno-mir-146a standard; RNA; RNO; 95 BP.
XX
AC MI0000919;
XX
DE Rattus norvegicus miR-146a stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314241; Mir146a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0000852"
FT /product="rno-miR-146a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000170"
FT miRNA 52..72
FT /accession="MIMAT0017132"
FT /product="rno-miR-146a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 95 BP; 22 A; 19 C; 22 G; 0 T; 32 other;
uguguauccu cagcucugag aacugaauuc cauggguuau agcaauguca gaccugugaa 60
guucaguucu uuagcuggga uagcucuauc gucau 95
//
ID rno-mir-150 standard; RNA; RNO; 85 BP.
XX
AC MI0000920;
XX
DE Rattus norvegicus miR-150 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314158; Mir150.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0000853"
FT /product="rno-miR-150-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000172"
FT miRNA 52..70
FT /accession="MIMAT0017133"
FT /product="rno-miR-150-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 85 BP; 14 A; 28 C; 25 G; 0 T; 18 other;
cuucucaagg cccugucucc caacccuugu accagugcug ugccucagac ccugguacag 60
gccuggggga cagggacuug gggac 85
//
ID rno-mir-152 standard; RNA; RNO; 85 BP.
XX
AC MI0000921;
XX
DE Rattus norvegicus miR-152 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314037; Mir152.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0017134"
FT /product="rno-miR-152-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 53..73
FT /accession="MIMAT0000854"
FT /product="rno-miR-152-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000174"
XX
SQ Sequence 85 BP; 15 A; 25 C; 27 G; 0 T; 18 other;
uguuccccgg gcccagguuc ugugauacac uccgacucgg gcucuggagc agucagugca 60
ugacagaacu ugggcccggu aggac 85
//
ID rno-mir-153 standard; RNA; RNO; 87 BP.
XX
AC MI0000922;
XX
DE Rattus norvegicus miR-153 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314038; Mir153.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0017135"
FT /product="rno-miR-153-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 53..74
FT /accession="MIMAT0000855"
FT /product="rno-miR-153-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000175"
XX
SQ Sequence 87 BP; 23 A; 14 C; 24 G; 0 T; 26 other;
agcgguggcc agugucauuu uugugauguu gcagcuagua auaugagccc aguugcauag 60
ucacaaaagu gaucauugga aacugug 87
//
ID rno-mir-154 standard; RNA; RNO; 84 BP.
XX
AC MI0000923;
XX
DE Rattus norvegicus miR-154 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314039; Mir154.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000856"
FT /product="rno-miR-154-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000480"
FT miRNA 51..72
FT /accession="MIMAT0017136"
FT /product="rno-miR-154-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 84 BP; 18 A; 18 C; 19 G; 0 T; 29 other;
gcggugcuug aagauagguu auccguguug ccuucgcuuu auucgugacg aaucauacac 60
gguugaccua uuuuucagua ccaa 84
//
ID rno-mir-181c standard; RNA; RNO; 106 BP.
XX
AC MI0000924;
XX
DE Rattus norvegicus miR-181c stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314242; Mir181c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0000857"
FT /product="rno-miR-181c-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0001380"
FT miRNA 63..84
FT /accession="MIMAT0017137"
FT /product="rno-miR-181c-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 106 BP; 25 A; 29 C; 32 G; 0 T; 20 other;
agaacuugcc aaggguuugg gggaacauuc aaccugucgg ugaguuuggg cagcucagac 60
aaaccaucga ccguugagug gaccccgagg ccuggaacug ccaccc 106
//
ID rno-mir-181a-2 standard; RNA; RNO; 117 BP.
XX
AC MI0000925;
XX
DE Rattus norvegicus miR-181a-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314292; Mir181a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..61
FT /accession="MIMAT0000858"
FT /product="rno-miR-181a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], SOLiD [4]"
FT miRNA 84..102
FT /accession="MIMAT0017138"
FT /product="rno-miR-181a-2-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 117 BP; 39 A; 26 C; 27 G; 0 T; 25 other;
agaugggcaa ccaaggcagc cuuaagagga cuccauggaa cauucaacgc ugucggugag 60
uuugggauuc aaaaacaaaa aaaaccacca accguugacu guaccuuggg auucuua 117
//
ID rno-mir-181b-1 standard; RNA; RNO; 110 BP.
XX
AC MI0000926;
XX
DE Rattus norvegicus miR-181b-1 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314040; Mir181b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 36..58
FT /accession="MIMAT0000859"
FT /product="rno-miR-181b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0001366"
FT miRNA 76..96
FT /accession="MIMAT0017139"
FT /product="rno-miR-181b-1-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 110 BP; 31 A; 23 C; 27 G; 0 T; 29 other;
ccugugcaga gaugauguuu acaaagguca caaucaacau ucauugcugu cgguggguug 60
aacuguguag aaaagcucac ugaacaauga augcaacugu ggccccgcuu 110
//
ID rno-mir-181b-2 standard; RNA; RNO; 88 BP.
XX
AC MI0000927;
XX
DE Rattus norvegicus miR-181b-2 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314159; Mir181b-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0000859"
FT /product="rno-miR-181b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0001367"
FT miRNA 53..74
FT /accession="MIMAT0017140"
FT /product="rno-miR-181b-2-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 88 BP; 25 A; 20 C; 21 G; 0 T; 22 other;
ugauggcugc acucaacauu cauugcuguc gguggguuug aaugucaacc aacucacugg 60
ucaaugaaug caaacugcgg gccaaaaa 88
//
ID rno-mir-183 standard; RNA; RNO; 110 BP.
XX
AC MI0000928;
XX
DE Rattus norvegicus miR-183 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314041; Mir183.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..48
FT /accession="MIMAT0000860"
FT /product="rno-miR-183-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000273"
FT miRNA 67..87
FT /accession="MIMAT0017141"
FT /product="rno-miR-183-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 110 BP; 31 A; 25 C; 31 G; 0 T; 23 other;
ccagagagug ugacuccugu ccuguguaug gcacugguag aauucacugu gaacagucuc 60
ggucagugaa uuaccgaagg gccauaaaca gagcagagac agauccgcga 110
//
ID rno-mir-184 standard; RNA; RNO; 77 BP.
XX
AC MI0000929;
XX
DE Rattus norvegicus miR-184 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314042; Mir184.
XX
FH Key Location/Qualifiers
FH
FT miRNA 47..68
FT /accession="MIMAT0000861"
FT /product="rno-miR-184"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000226"
XX
SQ Sequence 77 BP; 19 A; 15 C; 19 G; 0 T; 24 other;
cacuuucccu uaucaguuuu ccagccagcu uugugacugu aaauguugga cggagaacug 60
auaaggguaa gugacug 77
//
ID rno-mir-185 standard; RNA; RNO; 80 BP.
XX
AC MI0000930;
XX
DE Rattus norvegicus miR-185 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314243; Mir185.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000862"
FT /product="rno-miR-185-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000227"
FT miRNA 58..76
FT /accession="MIMAT0017142"
FT /product="rno-miR-185-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 80 BP; 11 A; 22 C; 27 G; 0 T; 20 other;
gggggugagg gauuggagag aaaggcaguu ccugaugguc cccucccagg ggcuggcuuu 60
ccucuggucc uucucuccca 80
//
ID rno-mir-186 standard; RNA; RNO; 86 BP.
XX
AC MI0000931;
XX
DE Rattus norvegicus miR-186 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314043; Mir186.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000863"
FT /product="rno-miR-186-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000483"
FT miRNA 54..74
FT /accession="MIMAT0017143"
FT /product="rno-miR-186-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 86 BP; 20 A; 15 C; 15 G; 0 T; 36 other;
ugcuuacaac uuuccaaaga auucuccuuu ugggcuuucu cauuuuauuu uaagcccaaa 60
ggugaauuuu uugggaaguu ugagcu 86
//
ID rno-mir-187 standard; RNA; RNO; 104 BP.
XX
AC MI0000932;
XX
DE Rattus norvegicus miR-187 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314044; Mir187.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..46
FT /accession="MIMAT0017144"
FT /product="rno-miR-187-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 66..87
FT /accession="MIMAT0000864"
FT /product="rno-miR-187-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000229"
XX
SQ Sequence 104 BP; 20 A; 33 C; 33 G; 0 T; 18 other;
gggcucacag gacacaaugc ggauccucag gcuacaacac aggacccggg cgcugcucug 60
accccucgug ucuuguguug cagccggagg gacgcagguc ugca 104
//
ID rno-mir-190a-1 standard; RNA; RNO; 85 BP.
XX
AC MI0000933;
XX
DE Rattus norvegicus miR-190-1 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314160; Mir190.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000865"
FT /product="rno-miR-190a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0000232"
FT miRNA 51..72
FT /accession="MIMAT0017145"
FT /product="rno-miR-190a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 85 BP; 21 A; 15 C; 15 G; 0 T; 34 other;
ugcaggccuc ugugugauau guuugauaua uuagguuguu auuuaaucca acuauauauc 60
aagcauauuc cuacaguguc uugcc 85
//
ID rno-mir-191a standard; RNA; RNO; 91 BP.
XX
AC MI0000934;
XX
DE Rattus norvegicus miR-191a stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [3]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314045; Mir191.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0000866"
FT /product="rno-miR-191a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-4], Northern [1,3], SOLiD [5]"
FT miRNA 57..78
FT /accession="MIMAT0017146"
FT /product="rno-miR-191a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [5]"
XX
SQ Sequence 91 BP; 17 A; 29 C; 23 G; 0 T; 22 other;
ggcuggacag cgggcaacgg aaucccaaaa gcagcuguug ucuccagagc auuccagcug 60
cacuuggauu ucguucccug cucuccugcc u 91
//
ID rno-mir-192 standard; RNA; RNO; 110 BP.
XX
AC MI0000935;
XX
DE Rattus norvegicus miR-192 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314193; Mir192.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0000867"
FT /product="rno-miR-192-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000234"
FT miRNA 67..88
FT /accession="MIMAT0017147"
FT /product="rno-miR-192-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 110 BP; 24 A; 31 C; 28 G; 0 T; 27 other;
gucaagaugg agugcacagg gcucugaccu augaauugac agccaguacu cugaucucgc 60
cucuggcugc caguuccaua ggucacaggu auguucgccu caaugccagc 110
//
ID rno-mir-193a standard; RNA; RNO; 86 BP.
XX
AC MI0000936;
XX
DE Rattus norvegicus miR-193 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314244; Mir193.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0004736"
FT /product="rno-miR-193a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT miRNA 54..75
FT /accession="MIMAT0000868"
FT /product="rno-miR-193a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000235"
XX
SQ Sequence 86 BP; 16 A; 23 C; 30 G; 0 T; 17 other;
gcggacggga gcugagagcu gggucuuugc gggcaagaug agggugucag uucaacuggc 60
cuacaaaguc ccaguccucg gcuccc 86
//
ID rno-mir-194-1 standard; RNA; RNO; 83 BP.
XX
AC MI0000937;
XX
DE Rattus norvegicus miR-194-1 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314046; Mir194-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000869"
FT /product="rno-miR-194-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000488"
XX
SQ Sequence 83 BP; 19 A; 21 C; 21 G; 0 T; 22 other;
auggagucau cacguguaac agcaacucca uguggacugu gcacagaucc caguggagcu 60
gcuguuacuu uugauggccu cca 83
//
ID rno-mir-194-2 standard; RNA; RNO; 85 BP.
XX
AC MI0000938;
XX
DE Rattus norvegicus miR-194-2 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314047; Mir194-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0000869"
FT /product="rno-miR-194-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000733"
FT miRNA 51..71
FT /accession="MIMAT0017148"
FT /product="rno-miR-194-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 85 BP; 14 A; 24 C; 27 G; 0 T; 20 other;
uggcucccac ccccuguaac agcaacucca uguggaagug cccacugauu ccaguggggc 60
ugcuguuauc ugggguggag gcugg 85
//
ID rno-mir-195 standard; RNA; RNO; 87 BP.
XX
AC MI0000939;
XX
DE Rattus norvegicus miR-195 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314281; Mir195.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0000870"
FT /product="rno-miR-195-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000237"
FT miRNA 53..75
FT /accession="MIMAT0017149"
FT /product="rno-miR-195-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 87 BP; 19 A; 20 C; 27 G; 0 T; 21 other;
aacucuccug gcucuagcag cacagaaaua uuggcacggg uaagugaguc ugccaauauu 60
ggcugugcug cuccaggcag gguggug 87
//
ID rno-mir-196a standard; RNA; RNO; 110 BP.
XX
AC MI0000940;
XX
DE Rattus norvegicus miR-196a stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 15105502.
RA Yekta S, Shih IH, Bartel DP;
RT "MicroRNA-directed cleavage of HOXB8 mRNA";
RL Science. 304:594-596(2004).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314048; Mir196a.
XX
CC Yekta et al. report that miR-196 miRNAs are expressed from HOX gene
CC clusters in mammals, and that HOX genes in these clusters are targets of
CC miR-196. Indeed, HOXB8 mRNA was shown to be a natural target for
CC miR-196-directed cleavage through a perfectly complementary miR-target
CC site. Other HOX genes have imperfect miR-196 complementary sites
CC indicative of regulation by translational repression [2]. The mature
CC sequence shown here represents the most commonly cloned form from
CC large-scale cloning studies [3]. The ends of the miRNA may be offset with
CC respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0000871"
FT /product="rno-miR-196a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], SOLiD [4]"
FT /similarity="MI0000279"
FT miRNA 61..82
FT /accession="MIMAT0004737"
FT /product="rno-miR-196a-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
XX
SQ Sequence 110 BP; 21 A; 19 C; 32 G; 0 T; 38 other;
uguuugcuca gcugaucugu ggcuuaggua guuucauguu guugggauug aguuuugaac 60
ucggcaacaa gaaacugccu gaguuacauc agucgguuuu cgucgagggc 110
//
ID rno-mir-199a standard; RNA; RNO; 110 BP.
XX
AC MI0000941;
XX
DE Rattus norvegicus miR-199a stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314245; Mir199a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..53
FT /accession="MIMAT0000872"
FT /product="rno-miR-199a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [3]"
FT /similarity="MI0000281"
FT miRNA 70..91
FT /accession="MIMAT0004738"
FT /product="rno-miR-199a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
XX
SQ Sequence 110 BP; 23 A; 29 C; 31 G; 0 T; 27 other;
uggaagcuuc uggagauccu gcuccgucgc cccaguguuc agacuaccug uucaggacaa 60
ugccguugua caguagucug cacauugguu agacugggca agggccagca 110
//
ID rno-mir-200c standard; RNA; RNO; 69 BP.
XX
AC MI0000942;
XX
DE Rattus norvegicus miR-200c stem-loop
XX
RN [1]
RX PUBMED; 14573789.
RA Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ;
RT "Reduced accumulation of specific microRNAs in colorectal neoplasia";
RL Mol Cancer Res. 1:882-891(2003).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314049; Mir200c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..25
FT /accession="MIMAT0017150"
FT /product="rno-miR-200c-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 45..65
FT /accession="MIMAT0000873"
FT /product="rno-miR-200c-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0000650"
XX
SQ Sequence 69 BP; 11 A; 15 C; 23 G; 0 T; 20 other;
cccucgucuu acccagcagu guuugggugc ugguugggag ucucuaauac ugccggguaa 60
ugauggagg 69
//
ID rno-mir-200a standard; RNA; RNO; 89 BP.
XX
AC MI0000943;
XX
DE Rattus norvegicus miR-200a stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314194; Mir200a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0017151"
FT /product="rno-miR-200a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 54..75
FT /accession="MIMAT0000874"
FT /product="rno-miR-200a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000554"
XX
SQ Sequence 89 BP; 17 A; 22 C; 24 G; 0 T; 26 other;
cugggccucu gugggcaucu uaccggacag ugcuggauuu cuuggcuuga cucuaacacu 60
gucugguaac gauguucaaa ggugaccca 89
//
ID rno-mir-200b standard; RNA; RNO; 95 BP.
XX
AC MI0000944;
XX
DE Rattus norvegicus miR-200b stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314050; Mir200b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0017152"
FT /product="rno-miR-200b-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 57..79
FT /accession="MIMAT0000875"
FT /product="rno-miR-200b-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000342"
XX
SQ Sequence 95 BP; 19 A; 25 C; 28 G; 0 T; 23 other;
ccaacuuggg cagccguggc caucuuacug ggcagcauug gauagugucu gaucucuaau 60
acugccuggu aaugaugacg gcggagcccu gcacg 95
//
ID rno-mir-203a standard; RNA; RNO; 97 BP.
XX
AC MI0000945;
XX
DE Rattus norvegicus miR-203a stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314161; Mir203.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0017153"
FT /product="rno-miR-203a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 52..73
FT /accession="MIMAT0000876"
FT /product="rno-miR-203a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000246"
XX
SQ Sequence 97 BP; 21 A; 26 C; 29 G; 0 T; 21 other;
gcgcgccugg uccagugguu cuuaacaguu caacaguucu guagcgcaau ugugaaaugu 60
uuaggaccac uagacccggc gcgcacggca gcggcga 97
//
ID rno-mir-204 standard; RNA; RNO; 110 BP.
XX
AC MI0000946;
XX
DE Rattus norvegicus miR-204 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314051; Mir204.
XX
FH Key Location/Qualifiers
FH
FT miRNA 33..54
FT /accession="MIMAT0000877"
FT /product="rno-miR-204-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000247"
FT miRNA 72..93
FT /accession="MIMAT0004739"
FT /product="rno-miR-204-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 110 BP; 25 A; 26 C; 29 G; 0 T; 30 other;
ggcuacagcc cuucuucaug ugacucgugg acuucccuuu gucauccuau gccugagaau 60
auaugaagga ggcugggaag gcaaagggac guucaauugu caucacuggc 110
//
ID rno-mir-205 standard; RNA; RNO; 108 BP.
XX
AC MI0000947;
XX
DE Rattus norvegicus miR-205 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314246; Mir205.
XX
FH Key Location/Qualifiers
FH
FT miRNA 33..55
FT /accession="MIMAT0000878"
FT /product="rno-miR-205"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0000248"
XX
SQ Sequence 108 BP; 26 A; 32 C; 26 G; 0 T; 24 other;
aaacagcccc agacaaucca uggguccucc uguccuucau uccaccggag ucugucuuau 60
gccaaccaga uuucagugga gugaagcuca ggaggcaugg agcugcca 108
//
ID rno-mir-206 standard; RNA; RNO; 84 BP.
XX
AC MI0000948;
XX
DE Rattus norvegicus miR-206 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314052; Mir206.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0017154"
FT /product="rno-miR-206-5p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
FT miRNA 51..72
FT /accession="MIMAT0000879"
FT /product="rno-miR-206-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0000249"
XX
SQ Sequence 84 BP; 19 A; 18 C; 20 G; 0 T; 27 other;
cuuccccagg ccacaugcuu cuuuauaucc ucauagauau cacugcgcua uggaauguaa 60
ggaagugugu gguuuuggca agug 84
//
ID rno-mir-208a standard; RNA; RNO; 83 BP.
XX
AC MI0000949;
XX
DE Rattus norvegicus miR-208 stem-loop
XX
RN [1]
RX PUBMED; 12554859.
RA Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T;
RT "New microRNAs from mouse and human";
RL RNA. 9:175-179(2003).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314162; Mir208.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0017155"
FT /product="rno-miR-208a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 50..67
FT /accession="MIMAT0000880"
FT /product="rno-miR-208a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0000555"
XX
SQ Sequence 83 BP; 19 A; 17 C; 24 G; 0 T; 23 other;
uuccuuugac gggugagcuu uuggcccggg uuauaccuga cucucacgua uaagacgagc 60
aaaaagcuug uuggucagag gag 83
//
ID rno-mir-210 standard; RNA; RNO; 110 BP.
XX
AC MI0000950;
XX
DE Rattus norvegicus miR-210 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314053; Mir210.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..49
FT /accession="MIMAT0017156"
FT /product="rno-miR-210-5p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
FT miRNA 66..87
FT /accession="MIMAT0000881"
FT /product="rno-miR-210-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], SOLiD [3]"
FT /similarity="MI0001379"
XX
SQ Sequence 110 BP; 18 A; 42 C; 33 G; 0 T; 17 other;
ccggggcagu cccuccaggc ucaggacagc cacugcccac agcacacugc guugcuccgg 60
acccacugug cgugugacag cggcugaucu gucccugggc agcgcgaacc 110
//
ID rno-mir-211 standard; RNA; RNO; 106 BP.
XX
AC MI0000951;
XX
DE Rattus norvegicus miR-211 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314054; Mir211.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..47
FT /accession="MIMAT0000882"
FT /product="rno-miR-211-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0001377"
FT miRNA 62..81
FT /accession="MIMAT0017157"
FT /product="rno-miR-211-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 106 BP; 18 A; 30 C; 32 G; 0 T; 26 other;
cagcuuggac cugugaccuc ugggcuuccc uuugucaucc uuugccuagg ccucugagug 60
gggcaaggac agcaaagggg ggcucagugg ucaccucuac ugcaga 106
//
ID rno-mir-212 standard; RNA; RNO; 111 BP.
XX
AC MI0000952;
XX
DE Rattus norvegicus miR-212 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314247; Mir212.
XX
FH Key Location/Qualifiers
FH
FT miRNA 32..55
FT /accession="MIMAT0017158"
FT /product="rno-miR-212-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 72..93
FT /accession="MIMAT0000883"
FT /product="rno-miR-212-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0003385"
XX
SQ Sequence 111 BP; 15 A; 49 C; 31 G; 0 T; 16 other;
cgggauaucc ccgcccgggc agcgcgccgg caccuuggcu cuagacugcu uacugcccgg 60
gccgcccuca guaacagucu ccagucacgg ccaccgacgc cuggccccgc c 111
//
ID rno-mir-181a-1 standard; RNA; RNO; 100 BP.
XX
AC MI0000953;
XX
DE Rattus norvegicus miR-181a-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314195; Mir181a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0000858"
FT /product="rno-miR-181a-5p"
FT /evidence=experimental
FT /experiment="cloned [3-4], SOLiD [4]"
FT /similarity="MI0000289"
FT miRNA 55..76
FT /accession="MIMAT0000884"
FT /product="rno-miR-181a-1-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [4]"
FT /similarity="MI0001380"
XX
SQ Sequence 100 BP; 29 A; 23 C; 18 G; 0 T; 30 other;
agguugcuuc agugaacauu caacgcuguc ggugaguuug gaauucaaau aaaaaccauc 60
gaccguugau uguacccuau agcuaaccau uaucuacucc 100
//
ID rno-mir-214 standard; RNA; RNO; 110 BP.
XX
AC MI0000954;
XX
DE Rattus norvegicus miR-214 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314055; Mir214.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..30
FT /accession="MIMAT0017159"
FT /product="rno-miR-214-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 71..91
FT /accession="MIMAT0000885"
FT /product="rno-miR-214-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0001381"
XX
SQ Sequence 110 BP; 26 A; 33 C; 27 G; 0 T; 24 other;
guccuggaug gacagaguug ucaugugucu gccugucuac acuugcugug cagaacaucc 60
gcucaccugu acagcaggca cagacaggca gucacaugac aacccagccu 110
//
ID rno-mir-216a standard; RNA; RNO; 106 BP.
XX
AC MI0000955;
XX
DE Rattus norvegicus miR-216a stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314216; Mir216a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0000886"
FT /product="rno-miR-216a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0001382"
FT miRNA 59..80
FT /accession="MIMAT0017160"
FT /product="rno-miR-216a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 106 BP; 25 A; 24 C; 22 G; 0 T; 35 other;
guuagcuaug aguuaguuua aucucagcug gcaacuguga gaugucccua ucauuccuca 60
caguggucuc ugggauuaug cuaaacagag caauuuccuu gaccuc 106
//
ID rno-mir-217 standard; RNA; RNO; 105 BP.
XX
AC MI0000956;
XX
DE Rattus norvegicus miR-217 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314056; Mir217.
XX
FH Key Location/Qualifiers
FH
FT miRNA 32..53
FT /accession="MIMAT0000887"
FT /product="rno-miR-217-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0001383"
FT miRNA 70..91
FT /accession="MIMAT0017161"
FT /product="rno-miR-217-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 105 BP; 31 A; 26 C; 19 G; 0 T; 29 other;
accacaguca uuguaguuuu gaugucgcag auacugcauc aggaacugac uggauaagac 60
ucagucacca ucaguuccua augcauugcc uucagcaucu aaaca 105
//
ID rno-mir-218a-2 standard; RNA; RNO; 110 BP.
XX
AC MI0000957;
XX
DE Rattus norvegicus miR-218a-2 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314057; Mir218-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0000888"
FT /product="rno-miR-218a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1-2], SOLiD [4]"
FT miRNA 67..88
FT /accession="MIMAT0004740"
FT /product="rno-miR-218a-2-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
XX
SQ Sequence 110 BP; 23 A; 29 C; 31 G; 0 T; 27 other;
gaccaguugc cgcggggcuu uccuuugugc uugaucuaac cauguggugg aacgauggaa 60
acggaacaug guucugucaa gcaccgcgga aagcaucgcu cucuccugca 110
//
ID rno-mir-218a-1 standard; RNA; RNO; 110 BP.
XX
AC MI0000958;
XX
DE Rattus norvegicus miR-218a-1 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314248; Mir218-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0000888"
FT /product="rno-miR-218a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1-2], SOLiD [4]"
FT miRNA 64..84
FT /accession="MIMAT0017162"
FT /product="rno-miR-218a-1-3p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
XX
SQ Sequence 110 BP; 28 A; 23 C; 27 G; 0 T; 32 other;
gugauaacgu agcgagauuu ucuguugugc uugaucuaac caugugcuug cgagguauga 60
guaaaacaug guuccgucaa gcaccaugga acgucacgca gcuuucuaca 110
//
ID rno-mir-219a-1 standard; RNA; RNO; 110 BP.
XX
AC MI0000959;
XX
DE Rattus norvegicus miR-219a-1 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314058; Mir219-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0000889"
FT /product="rno-miR-219a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0001384"
FT miRNA 62..83
FT /accession="MIMAT0004741"
FT /product="rno-miR-219a-1-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 110 BP; 15 A; 41 C; 34 G; 0 T; 20 other;
cugucccggg ccgcggcucc ugauugucca aacgcaauuc ucgagucucu ggcuccggcc 60
gagaguugcg ucuggacguc ccgagccgcc gcccccaaac cucgaggggg 110
//
ID rno-mir-219a-2 standard; RNA; RNO; 96 BP.
XX
AC MI0000960;
XX
DE Rattus norvegicus miR-219a-2 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314293; Mir219-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0000889"
FT /product="rno-miR-219a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0001385"
FT miRNA 62..83
FT /accession="MIMAT0005446"
FT /product="rno-miR-219a-2-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 96 BP; 20 A; 25 C; 27 G; 0 T; 24 other;
acucaggggc uucaccacug auuguccaaa cgcaauucuu guacgagucu gcggccaacc 60
gagaauugug gcuggacauc ugugguugag cuccgg 96
//
ID rno-mir-221 standard; RNA; RNO; 109 BP.
XX
AC MI0000961;
XX
DE Rattus norvegicus miR-221 stem-loop
XX
RN [1]
RX PUBMED; 14691248.
RA Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G;
RT "Identification of many microRNAs that copurify with polyribosomes in
RT mammalian neurons";
RL Proc Natl Acad Sci U S A. 101:360-365(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314163; Mir221.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..47
FT /accession="MIMAT0017163"
FT /product="rno-miR-221-5p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
FT miRNA 65..87
FT /accession="MIMAT0000890"
FT /product="rno-miR-221-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], SOLiD [4]"
XX
SQ Sequence 109 BP; 24 A; 22 C; 28 G; 0 T; 35 other;
ugaauaucca ggucuggggc augaaccugg cauacaaugu agauuucugu guuuguuagg 60
caacagcuac auugucugcu ggguuucagg cuaccuggaa gcauuucuc 109
//
ID rno-mir-222 standard; RNA; RNO; 103 BP.
XX
AC MI0000962;
XX
DE Rattus norvegicus miR-222 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314059; Mir222.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..42
FT /accession="MIMAT0017164"
FT /product="rno-miR-222-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 62..82
FT /accession="MIMAT0000891"
FT /product="rno-miR-222-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000299"
XX
SQ Sequence 103 BP; 21 A; 24 C; 28 G; 0 T; 30 other;
aaggauuagg gugcccucag uggcucagua gccaguguag auccugucuu ugguaaucag 60
cagcuacauc uggcuacugg gucucugaug gcaucaucua gcu 103
//
ID rno-mir-223 standard; RNA; RNO; 110 BP.
XX
AC MI0000963;
XX
DE Rattus norvegicus miR-223 stem-loop
XX
RN [1]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314060; Mir223.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..48
FT /accession="MIMAT0017165"
FT /product="rno-miR-223-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 68..88
FT /accession="MIMAT0000892"
FT /product="rno-miR-223-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0001389"
XX
SQ Sequence 110 BP; 21 A; 24 C; 29 G; 0 T; 36 other;
ucuggccuuc ugcaguguua cgcuccgugu auuugacaag cugaguugga cacucugugu 60
gguagagugu caguuuguca aauaccccaa guguggcuca ugcuuaucag 110
//
ID rno-mir-290 standard; RNA; RNO; 81 BP.
XX
AC MI0000964;
XX
DE Rattus norvegicus miR-290 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314249; Mir290.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..30
FT /accession="MIMAT0000893"
FT /product="rno-miR-290"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0000388"
XX
SQ Sequence 81 BP; 14 A; 17 C; 21 G; 0 T; 29 other;
ucaucuugcg guucucaaac uaugggggca cuuuuuuuuu cuuuaaaaag ugccgccagg 60
uuuuagggcc ugccgguuga g 81
//
ID rno-mir-291a standard; RNA; RNO; 82 BP.
XX
AC MI0000965;
XX
DE Rattus norvegicus miR-291a stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
DR ENTREZGENE; 100314061; Mir291a.
XX
CC This sequence is the predicted rat homologue of a confirmed miRNA from
CC mouse [1]. Its expression has not been experimentally verified in rat.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0000894"
FT /product="rno-miR-291a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000389"
FT miRNA 50..72
FT /accession="MIMAT0000895"
FT /product="rno-miR-291a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000389"
XX
SQ Sequence 82 BP; 15 A; 22 C; 25 G; 0 T; 20 other;
ccgguguagu agccaucaaa guggaggccc ucucuugggc ccgagcuaga aagugcuucc 60
acuuugugug ccacugcaug gg 82
//
ID rno-mir-292 standard; RNA; RNO; 82 BP.
XX
AC MI0000966;
XX
DE Rattus norvegicus miR-292 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314062; Mir292.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0000896"
FT /product="rno-miR-292-5p"
FT /evidence=not_experimental
FT /similarity="MI0000390"
FT miRNA 51..73
FT /accession="MIMAT0000897"
FT /product="rno-miR-292-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0000390"
XX
SQ Sequence 82 BP; 17 A; 15 C; 23 G; 0 T; 27 other;
caaccuguga uacucaaacu gggggcucuu uuggguuuuc uuuggaagaa aagugccgcc 60
agguuuugag uguuaccgau ug 82
//
ID rno-mir-296 standard; RNA; RNO; 78 BP.
XX
AC MI0000967;
XX
DE Rattus norvegicus miR-296 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314282; Mir296.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0000898"
FT /product="rno-miR-296-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0000394"
FT miRNA 47..68
FT /accession="MIMAT0004742"
FT /product="rno-miR-296-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
XX
SQ Sequence 78 BP; 9 A; 22 C; 26 G; 0 T; 21 other;
ggaccuuucu ggagggcccc cccucaaucc uguugugcuc gcuucagagg guugggugga 60
ggcucuccug aagguguc 78
//
ID rno-mir-297 standard; RNA; RNO; 66 BP.
XX
AC MI0000968;
XX
DE Rattus norvegicus miR-297 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
DR ENTREZGENE; 100314063; Mir297.
XX
CC This sequence is the predicted rat homologue of a confirmed miRNA from
CC mouse [1]. Its expression has not been experimentally verified in rat.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..27
FT /accession="MIMAT0000899"
FT /product="rno-miR-297"
FT /evidence=not_experimental
FT /similarity="MI0000395"
XX
SQ Sequence 66 BP; 12 A; 7 C; 21 G; 0 T; 26 other;
augcauguau gugugcaugu augcaugcau gcauguaugu auguauggug cacuugugug 60
ugugug 66
//
ID rno-mir-298 standard; RNA; RNO; 82 BP.
XX
AC MI0000969;
XX
DE Rattus norvegicus miR-298 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314250; Mir298.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0000900"
FT /product="rno-miR-298-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000398"
FT miRNA 52..73
FT /accession="MIMAT0017166"
FT /product="rno-miR-298-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 82 BP; 12 A; 19 C; 27 G; 0 T; 24 other;
ccaggccuuc ggcagaggag ggcuguucuu cccuuggguu uuaugacugg gaggaacuag 60
ccuucucucu gcuuaggagu gg 82
//
ID rno-mir-299a standard; RNA; RNO; 63 BP.
XX
AC MI0000970;
XX
DE Rattus norvegicus miR-299 stem-loop
XX
RN [1]
RX PUBMED; 12919684.
RA Houbaviy HB, Murray MF, Sharp PA;
RT "Embryonic stem cell-specific MicroRNAs";
RL Dev Cell. 5:351-358(2003).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314064; Mir299.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0000901"
FT /product="rno-miR-299a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0000399"
FT miRNA 39..59
FT /accession="MIMAT0017167"
FT /product="rno-miR-299a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 63 BP; 17 A; 12 C; 14 G; 0 T; 20 other;
aagaaauggu uuaccguccc acauacauuu ugaguaugua ugugggacgg uaaaccgcuu 60
cuu 63
//
ID rno-mir-300 standard; RNA; RNO; 79 BP.
XX
AC MI0000971;
XX
DE Rattus norvegicus miR-300 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17805466.
RA He X, Zhang Q, Liu Y, Pan X;
RT "Cloning and identification of novel microRNAs from rat hippocampus";
RL Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
XX
RN [4]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314196; Mir300.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0004743"
FT /product="rno-miR-300-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], SOLiD [4]"
FT miRNA 51..72
FT /accession="MIMAT0000902"
FT /product="rno-miR-300-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], SOLiD [4]"
FT /similarity="MI0000400"
XX
SQ Sequence 79 BP; 19 A; 14 C; 22 G; 0 T; 24 other;
gcuacuugaa gagagguuau ccuuugugug uuugcuuuac gcgaaaugaa uaugcaaggg 60
caagcucucu ucgaggagc 79
//
ID rno-mir-320 standard; RNA; RNO; 82 BP.
XX
AC MI0000972;
XX
DE Rattus norvegicus miR-320 stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314065; Mir320.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0017168"
FT /product="rno-miR-320-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 48..69
FT /accession="MIMAT0000903"
FT /product="rno-miR-320-3p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0000542"
XX
SQ Sequence 82 BP; 14 A; 22 C; 27 G; 0 T; 19 other;
gccucgcugu ccuccgccuu cucuucccgg uucuucccgg agucgggaaa agcuggguug 60
agagggcgaa aaaggauaug gg 82
//
ID mmu-mir-215 standard; RNA; MMU; 112 BP.
XX
AC MI0000974;
XX
DE Mus musculus miR-215 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 2676891; Mir215.
DR ENTREZGENE; 387211; Mir215.
XX
CC This mouse miRNA was predicted by computational methods using conservation
CC with human and Fugu rubripes sequences [1]. Expression of the excised miR
CC has been validated in zebrafish, and the 5' end mapped by PCR. The 3' end
CC was not experimentally determined. The mature sequence differs from the
CC human miR-215 at A12->U, and its expression has not been verified in
CC mouse.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..50
FT /accession="MIMAT0000904"
FT /product="mmu-miR-215-5p"
FT /evidence=experimental
FT /experiment="Illumina [2-3]"
FT miRNA 67..87
FT /accession="MIMAT0017169"
FT /product="mmu-miR-215-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 112 BP; 29 A; 24 C; 25 G; 0 T; 34 other;
agcucucagc aucaacggug uacaggagaa ugaccuauga uuugacagac cgugcagcug 60
uguaugucug ucauucugua ggccaauauu cuguauguca cugcuacuua aa 112
//
ID ath-MIR167d standard; RNA; ATH; 377 BP.
XX
AC MI0000975;
XX
DE Arabidopsis thaliana miR167d stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP535; miR167.
XX
CC This sequence is a predicted paralogue of the previously identified miR167
CC family [1], later experimentally verified [2]. It is predicted to target
CC mRNAs coding for Auxin Response Factors (ARF transcription factors).
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0000905"
FT /product="ath-miR167d"
FT /evidence=experimental
FT /experiment="cloned [2], 454 [3-4], MPSS [3], Illumina
FT [5]"
FT /similarity="MI0000208"
XX
SQ Sequence 377 BP; 107 A; 65 C; 68 G; 0 T; 137 other;
uguugguuuu uagaagcuga agcugccagc augaucuggu aaucgcuaca uacgacauac 60
acacaucacu aaacuucuuu auaauuuaug cacacacaua cagcucuuaa uggccacaac 120
ucaaaguuau aauuagugca ugaucucuag uuauuugacu gcuuuuaaua uauguuuaug 180
gauucacgca ugugugugua uguacauaau uuacaugcau gcacuuugug uaugguacac 240
aucaauuuga acccguucaa aauucuguuu uuauuaguau auauauagau guauguggug 300
ugugugucag ugugugugug uguuuauaga uaguaguacu aggucauccu gcagcuucag 360
ucacuaaauc accaaca 377
//
ID ath-MIR169b standard; RNA; ATH; 181 BP.
XX
AC MI0000976;
XX
DE Arabidopsis thaliana miR169b stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 15345049.
RA Wang XJ, Reyes JL, Chua NH, Gaasterland T;
RT "Prediction and identification of Arabidopsis thaliana microRNAs and their
RT mRNA targets";
RL Genome Biol. 5:R65(2004).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP1751; miR169.
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1]. It is predicted to target mRNAs coding for the CCAAT Binding
CC Factor (CBF) and HAP2-like transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 43..63
FT /accession="MIMAT0000906"
FT /product="ath-miR169b-5p"
FT /evidence=experimental
FT /experiment="Northern [2], cloned [3], 454 [4-5], MPSS
FT [4], Illumina [6]"
FT /similarity="MI0000212"
FT miRNA 124..145
FT /accession="MIMAT0031897"
FT /product="ath-miR169b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 181 BP; 49 A; 33 C; 41 G; 0 T; 58 other;
cccaacggag uagaauugca ugaaguggag uagaguauaa ugcagccaag gaugacuugc 60
cggaacguug uuaaccaugc auaugaauaa ugugaugauu aauuauguga ugaacauauu 120
ucuggcaagu uguccuucgg cuacauuuug cucucuucuu cucaugcaaa cuuuccuugg 180
g 181
//
ID ath-MIR169c standard; RNA; ATH; 411 BP.
XX
AC MI0000977;
XX
DE Arabidopsis thaliana miR169c stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP1751; miR169.
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1], later experimentally verified [2]. It is predicted to target
CC mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 113..133
FT /accession="MIMAT0000907"
FT /product="ath-miR169c"
FT /evidence=experimental
FT /experiment="5'RACE [2], cloned [2], 454 [3-4], MPSS [3],
FT Illumina [5]"
FT /similarity="MI0000212"
XX
SQ Sequence 411 BP; 126 A; 58 C; 81 G; 0 T; 146 other;
ucguccauua ugaguauuaa uuaugguuag ggaaucuuac agaaugaaaa ugaaggugug 60
aauggauugu cucaucuaaa gccuugaaug ugggaaaaag gccauuguug uucagccaag 120
gaugacuugc cgguagcuug uauuaugauu acucuauauu cgauuuauau uauggagaug 180
augguuuaua uauauuuacu uaucuacaua guuuuaguug auuuuuuuuc guacguaaua 240
uaauacgaaa aaguauuuac uuauuuauau auguguguug gggcaagaag uguaaccaag 300
cuagcccggc aagucaucua uggcuaugca acugucucuu ccucucauuc uaggcuuacg 360
augacacgua aaaaauccca aauaucacua auaugauaug aauauggaug a 411
//
ID ath-MIR169d standard; RNA; ATH; 154 BP.
XX
AC MI0000978;
XX
DE Arabidopsis thaliana miR169d stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP276; miR169.
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1], later experimentally verified [2]. It is predicted to target
CC mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 41..61
FT /accession="MIMAT0000908"
FT /product="ath-miR169d"
FT /evidence=experimental
FT /experiment="cloned [2], 454 [3-4], MPSS [3], Illumina
FT [5]"
FT /similarity="MI0000212"
XX
SQ Sequence 154 BP; 43 A; 27 C; 30 G; 0 T; 54 other;
guaucauaga gucuugcaug gaaaaauuaa agaaugagau ugagccaagg augacuugcc 60
gauguuauca acaaaucuua acugauuuug guguccggca aguugaccuu ggcucuguuu 120
ccuucuuuuc uuuucaaugu caaacucuag auau 154
//
ID ath-MIR169e standard; RNA; ATH; 217 BP.
XX
AC MI0000979;
XX
DE Arabidopsis thaliana miR169e stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP276; miR169.
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1], later experimentally verified [2]. It is predicted to target
CC mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 69..89
FT /accession="MIMAT0000909"
FT /product="ath-miR169e"
FT /evidence=experimental
FT /experiment="cloned [2], 454 [3-4], MPSS [3], Illumina
FT [5]"
FT /similarity="MI0000212"
XX
SQ Sequence 217 BP; 65 A; 42 C; 36 G; 0 T; 74 other;
ugaugaugau gaugagucac uaauuaauug uaucauagag ucuugcaugg aaaaauagaa 60
aaugagauug agccaaggau gacuugccga uuuucucaac gaaucuuacu gauuauggua 120
uccggcaagu ugacuuuggc ucuguuuccu ucccuucuuu ucgaugucaa acucuagaua 180
ccuaaccaca uaucauauau aucaucauca uucauca 217
//
ID ath-MIR169f standard; RNA; ATH; 167 BP.
XX
AC MI0000980;
XX
DE Arabidopsis thaliana miR169f stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP276; miR169.
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1], later experimentally verified [2]. It is predicted to target
CC mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 32..52
FT /accession="MIMAT0000910"
FT /product="ath-miR169f-5p"
FT /evidence=experimental
FT /experiment="cloned [2], 454 [3-4], MPSS [3], Illumina
FT [5]"
FT /similarity="MI0000212"
FT miRNA 118..138
FT /accession="MIMAT0031898"
FT /product="ath-miR169f-3p"
FT /evidence=not_experimental
XX
SQ Sequence 167 BP; 37 A; 35 C; 38 G; 0 T; 57 other;
gggucuugca ugaaggaaua acgaauggaa uugagccaag gaugacuugc cgguuuaaac 60
ccaaccgguu uaugaccauu gauuuggucu cauucacaau cuguugauuc gugucuggca 120
aguugaccuu ggcucugcuu cguucucuau ucuuccaugu uagauuc 167
//
ID ath-MIR169g standard; RNA; ATH; 379 BP.
XX
AC MI0000981;
XX
DE Arabidopsis thaliana miR169g stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 15345049.
RA Wang XJ, Reyes JL, Chua NH, Gaasterland T;
RT "Prediction and identification of Arabidopsis thaliana microRNAs and their
RT mRNA targets";
RL Genome Biol. 5:R65(2004).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP276; miR169.
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1], later experimentally verified [3,4]. It is predicted to
CC target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like
CC transcription factors. Wang et al. report Northern blot evidence for the
CC miR169* sequence from the opposite arm of the precursor [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 144..164
FT /accession="MIMAT0000911"
FT /product="ath-miR169g-5p"
FT /evidence=experimental
FT /experiment="cloned [3], 454 [4-5], MPSS [4], Illumina
FT [6]"
FT /similarity="MI0000212"
FT miRNA 204..224
FT /accession="MIMAT0000912"
FT /product="ath-miR169g-3p"
FT /evidence=experimental
FT /experiment="Northern [2], 454 [5]"
XX
SQ Sequence 379 BP; 108 A; 58 C; 81 G; 0 T; 132 other;
ugccuauaaa uaccuucauc acgaguauga caagaucaca agacaagaaa agaaagguag 60
agaaaacaug auaaugauga uuacgaugau gagagucucu aguuguauca gagggucuug 120
cauggaagaa uagagaauga gguugagcca aggaugacuu gccggguuuu uuuaccaaug 180
aaucuaauua acugauucug guguccggca aguugaccuu ggcucuguuu ccuucucuuc 240
uuuuggaugu cagacuccaa gauaucuauc aucaugaauc gugaucaaac uuuguaauuu 300
cauugaaaug uguuuuucuu gaugcgaauu uuuuggcuua cgguuuuucg auuugaauga 360
ucagauuuuu guuuuugca 379
//
ID ath-MIR169h standard; RNA; ATH; 190 BP.
XX
AC MI0000982;
XX
DE Arabidopsis thaliana miR169h stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP1514; miR169.
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1], later experimentally verified [2,3]. It is predicted to
CC target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 46..66
FT /accession="MIMAT0000913"
FT /product="ath-miR169h"
FT /evidence=experimental
FT /experiment="5'RACE [2], cloned [2], 454 [3-4], MPSS [3],
FT Illumina [5]"
FT /similarity="MI0000212"
XX
SQ Sequence 190 BP; 51 A; 36 C; 39 G; 0 T; 64 other;
ucauauaaga gaaaauggug acaugaagaa ugagaacuug ugugguagcc aaggaugacu 60
ugccugcguu uuagaccaua uauaucaaag acucacucga ucgauagucu uagaguuggu 120
uggucgucag gcagucuccu uggcuauuca aacaauucuc auucucuuca uucacauuuc 180
ucuuuuuugg 190
//
ID ath-MIR169i standard; RNA; ATH; 206 BP.
XX
AC MI0000983;
XX
DE Arabidopsis thaliana miR169i stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP1514; miR169.
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1], later experimentally verified [2]. It is predicted to target
CC mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 40..60
FT /accession="MIMAT0000914"
FT /product="ath-miR169i"
FT /evidence=experimental
FT /experiment="cloned [2], 454 [3-4], MPSS [3], Illumina
FT [5]"
FT /similarity="MI0000212"
XX
SQ Sequence 206 BP; 60 A; 36 C; 38 G; 0 T; 72 other;
gaaggagaug ucaaagauga auagaagaau cauauuuggu agccaaggau gacuugccug 60
acucuuugug uaaaauguuu agugucuugu uugaagucac uauaaguugu aucaagcaau 120
gaccauuuug cuuauaaaaa agauaucagg cagucuccuu ggcuauccuu auauguucuu 180
cucuuucauc ucagacauuc accuuc 206
//
ID ath-MIR169j standard; RNA; ATH; 221 BP.
XX
AC MI0000984;
XX
DE Arabidopsis thaliana miR169j stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP1514; miR169.
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1], later experimentally verified [2]. It is predicted to target
CC mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..71
FT /accession="MIMAT0000915"
FT /product="ath-miR169j"
FT /evidence=experimental
FT /experiment="cloned [2], 454 [3-4], MPSS [3], Illumina
FT [5]"
FT /similarity="MI0000212"
XX
SQ Sequence 221 BP; 61 A; 34 C; 47 G; 0 T; 79 other;
gaguauaaug aggaagagag gucuaacaug gcgaaaagag ucauguuuag uagccaagga 60
ugacuugccu gaucuuuuuc accuccauga uucaauuugu aauucauggg uuuuggauua 120
uuauacauuc aaaaguauaa uaauuugaaa ucauguugaa ucuugcgggu uagguuucag 180
gcagucuccu uggcuaucuu gacaugcuuu uuucauucac g 221
//
ID ath-MIR169k standard; RNA; ATH; 213 BP.
XX
AC MI0000985;
XX
DE Arabidopsis thaliana miR169k stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP1514; miR169.
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1], later experimentally verified [2]. It is predicted to target
CC mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 43..63
FT /accession="MIMAT0000916"
FT /product="ath-miR169k"
FT /evidence=experimental
FT /experiment="cloned [2], 454 [3-4], MPSS [3], Illumina
FT [5]"
FT /similarity="MI0000212"
XX
SQ Sequence 213 BP; 65 A; 38 C; 39 G; 0 T; 71 other;
uuagaaggag augucaaaga ugaauaggag aacaauauuu gguagccaag gaugacuugc 60
cugcuucucu gaacaaaaug gucgauguca uguuuugaag ugacuauaag uuauaccaag 120
aaaugaccau uuuguuuaua aauagacauc aggcagucuc cuuggcuauc cuuauauguu 180
cuucuuucuc aacucagaua uuuaccuuca ucc 213
//
ID ath-MIR169l standard; RNA; ATH; 211 BP.
XX
AC MI0000986;
XX
DE Arabidopsis thaliana miR169l stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP1514; miR169.
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1], later experimentally verified [2]. It is predicted to target
CC mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 44..64
FT /accession="MIMAT0000917"
FT /product="ath-miR169l"
FT /evidence=experimental
FT /experiment="5'RACE [2], cloned [2], 454 [3-4], MPSS [3],
FT Illumina [5]"
FT /similarity="MI0000212"
XX
SQ Sequence 211 BP; 56 A; 31 C; 46 G; 0 T; 78 other;
augaagaaga gaggucuaau auggcgaaaa gagucauguu uaauagccaa ggaugacuug 60
ccugaucuuu uucaccucca ugauucaauu uuaaguucgu ggauuuugga uuauuaugcg 120
uuuaaaaggu auaauaauuu gagaucaugu ugaaucuugc ggguuagguu ucaggcaguc 180
ucuuuggcua ucuugacaug cuuucuucau c 211
//
ID ath-MIR169m standard; RNA; ATH; 212 BP.
XX
AC MI0000987;
XX
DE Arabidopsis thaliana miR169m stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP1514; miR169.
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1], later experimentally verified [2]. It is predicted to target
CC mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 42..62
FT /accession="MIMAT0000918"
FT /product="ath-miR169m"
FT /evidence=experimental
FT /experiment="cloned [2], 454 [3-4], MPSS [3], Illumina
FT [5]"
FT /similarity="MI0000212"
XX
SQ Sequence 212 BP; 64 A; 38 C; 40 G; 0 T; 70 other;
uagaaggaga agucaaagau gaauagaaga aucauauuug guagccaagg augacuugcc 60
uguuucuuug aguaaaaugg guuaguguca uguuugacaa gugacuauaa guuauaucaa 120
gcaaugacca uuuuacucau caaaagacau caggcagucu ccuuggcuau ccuuauaugu 180
ucuucucucu caucucagac guuuaccuuc au 212
//
ID ath-MIR169n standard; RNA; ATH; 215 BP.
XX
AC MI0000988;
XX
DE Arabidopsis thaliana miR169n stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP1514; miR169.
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1], later experimentally verified [2]. It is predicted to target
CC mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 45..65
FT /accession="MIMAT0000919"
FT /product="ath-miR169n"
FT /evidence=experimental
FT /experiment="5'RACE [2], cloned [2], 454 [3-4], MPSS [3],
FT Illumina [5]"
FT /similarity="MI0000212"
XX
SQ Sequence 215 BP; 56 A; 39 C; 44 G; 0 T; 76 other;
gaugaagaag agaggucuaa cauggcggaa agcgucaugu uuaguagcca aggaugacuu 60
gccugaucuu uuucgccucc acgauucaau uucaaauuca ugcauuuugg auuauuauac 120
cuuuuaaagu auaauagguc aaauaucaug uugaaucuug cggguuaggu uucaggcagu 180
cucuuuggcu aucuugacau gcuuuuucca uccau 215
//
ID ath-MIR171b standard; RNA; ATH; 117 BP.
XX
AC MI0000989;
XX
DE Arabidopsis thaliana miR171b stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
RN [3]
RX PUBMED; 15345049.
RA Wang XJ, Reyes JL, Chua NH, Gaasterland T;
RT "Prediction and identification of Arabidopsis thaliana microRNAs and their
RT mRNA targets";
RL Genome Biol. 5:R65(2004).
XX
RN [4]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [5]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [6]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
DR ASRP; ASRP444; miR171.
XX
CC This sequence is a predicted paralogue of the previously identified miR171
CC family [1]. It is predicted to target mRNAs coding for SCARECROW-like
CC transcription factors. Its expression in Arabidopsis was confirmed by
CC cloning and Northern blot [2,3]. The mature sequence reported in [3] is
CC offset by 4 nts with respect to the sequence shown here.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0031899"
FT /product="ath-miR171b-5p"
FT /evidence=not_experimental
FT miRNA 78..98
FT /accession="MIMAT0000920"
FT /product="ath-miR171b-3p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Northern [2-3], 5'RACE [4], 454
FT [5-6], MPSS [5]"
FT /similarity="MI0000214"
XX
SQ Sequence 117 BP; 35 A; 24 C; 29 G; 0 T; 29 other;
ugcaagguaa cgcgagauau uagugcgguu caaucaaaua gucguccucu uaacucaugg 60
agaacggugu uguucgauug agccgugcca auaucacgcg guaaaccaaa aauggca 117
//
ID ath-MIR171c standard; RNA; ATH; 116 BP.
XX
AC MI0000990;
XX
DE Arabidopsis thaliana miR171c stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
DR ASRP; ASRP444; miR171.
XX
CC This sequence is a predicted paralogue of the previously identified miR171
CC family [1], later experimentally verified [2,3]. It is predicted to
CC target mRNAs coding for SCARECROW-like transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..48
FT /accession="MIMAT0031900"
FT /product="ath-miR171c-5p"
FT /evidence=not_experimental
FT miRNA 90..110
FT /accession="MIMAT0000921"
FT /product="ath-miR171c-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Northern [2], 5'RACE [3], 454
FT [4-5], MPSS [4]"
FT /similarity="MI0000214"
XX
SQ Sequence 116 BP; 32 A; 22 C; 25 G; 0 T; 37 other;
ugagcgcacu aucggacauc aaauacgaga uauuggugcg guucaaucag aaaaccguac 60
ucuuuuguuu uaaagaucgg uuuauuugau ugagccgugc caauaucacg cguuua 116
//
ID ath-MIR172c standard; RNA; ATH; 133 BP.
XX
AC MI0000991;
XX
DE Arabidopsis thaliana miR172c stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP811; miR172.
XX
CC This sequence is a predicted paralogue of the previously identified miR172
CC family [1], later experimentally verified [2]. It is predicted to target
CC mRNAs coding for APETALA2-like transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 98..118
FT /accession="MIMAT0000922"
FT /product="ath-miR172c"
FT /evidence=experimental
FT /experiment="5'RACE [2], cloned [2], 454 [3-4], MPSS [3],
FT Illumina [5]"
FT /similarity="MI0000215"
XX
SQ Sequence 133 BP; 39 A; 22 C; 27 G; 0 T; 45 other;
agcuacuguu cgcuguugga gcaucaucaa gauucacaaa ucaucaagua uucguguaaa 60
uaaacccauu uaugauuaga uuuuugaugu auguaugaga aucuugauga ugcugcagcu 120
gcaaucagug gcu 133
//
ID ath-MIR172d standard; RNA; ATH; 124 BP.
XX
AC MI0000992;
XX
DE Arabidopsis thaliana miR172d stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP811; miR172.
XX
CC This sequence is a predicted paralogue of the previously identified miR172
CC family [1], later experimentally verified [2]. It is predicted to target
CC mRNAs coding for APETALA2-like transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..38
FT /accession="MIMAT0031901"
FT /product="ath-miR172d-5p"
FT /evidence=not_experimental
FT miRNA 88..108
FT /accession="MIMAT0000923"
FT /product="ath-miR172d-3p"
FT /evidence=experimental
FT /experiment="cloned [2], 454 [3-4], MPSS [3], Illumina
FT [5]"
FT /similarity="MI0000215"
XX
SQ Sequence 124 BP; 29 A; 19 C; 25 G; 0 T; 51 other;
agucauuguu ugcuauugca acaucuucaa gauucagaaa ucagauucuc uuauggguuu 60
ucuuuugagc cuuuauuuuu ugguuugaga aucuugauga ugcugcagcg gcaauuaaau 120
ggcu 124
//
ID ath-MIR390a standard; RNA; ATH; 107 BP.
XX
AC MI0001000;
XX
DE Arabidopsis thaliana miR390a stem-loop
XX
RN [1]
RX PUBMED; 15608278.
RA Gustafson AM, Allen E, Givan S, Smith D, Carrington JC, Kasschau KD;
RT "ASRP: the Arabidopsis Small RNA Project Database";
RL Nucleic Acids Res. 33:D637-D640(2005).
XX
RN [2]
RX PUBMED; 15632092.
RA Adai A, Johnson C, Mlotshwa S, Archer-Evans S, Manocha V, Vance V,
RA Sundaresan V;
RT "Computational prediction of miRNAs in Arabidopsis thaliana";
RL Genome Res. 15:78-91(2005).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP754; miR390.
XX
CC miR390 was independently cloned by the ASRP project [1], and predicted by
CC computational methods [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..38
FT /accession="MIMAT0000931"
FT /product="ath-miR390a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], 454 [4-5], MPSS [4], Illumina
FT [6]"
FT miRNA 70..90
FT /accession="MIMAT0031902"
FT /product="ath-miR390a-3p"
FT /evidence=not_experimental
XX
SQ Sequence 107 BP; 26 A; 22 C; 23 G; 0 T; 36 other;
guagagaaga aucuguaaag cucaggaggg auagcgccau gaugaucaca uucguuaucu 60
auuuuuuggc gcuauccauc cugaguuuca uuggcucuuc uuacuac 107
//
ID ath-MIR390b standard; RNA; ATH; 120 BP.
XX
AC MI0001001;
XX
DE Arabidopsis thaliana miR390b stem-loop
XX
RN [1]
RX PUBMED; 15608278.
RA Gustafson AM, Allen E, Givan S, Smith D, Carrington JC, Kasschau KD;
RT "ASRP: the Arabidopsis Small RNA Project Database";
RL Nucleic Acids Res. 33:D637-D640(2005).
XX
RN [2]
RX PUBMED; 15632092.
RA Adai A, Johnson C, Mlotshwa S, Archer-Evans S, Manocha V, Vance V,
RA Sundaresan V;
RT "Computational prediction of miRNAs in Arabidopsis thaliana";
RL Genome Res. 15:78-91(2005).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP754; miR390.
XX
CC miR390 was independently cloned by the ASRP project [1], and predicted by
CC computational methods [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0000932"
FT /product="ath-miR390b-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], 454 [4-5], MPSS [4], Illumina
FT [6]"
FT miRNA 88..107
FT /accession="MIMAT0031903"
FT /product="ath-miR390b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 120 BP; 28 A; 25 C; 28 G; 0 T; 39 other;
gagaaauagc uauaaagcuc aggagggaua gcgccauggc ucaccagugc uguauguuuu 60
guauaugcgu acauguauau cuguuggcgc uauccauccu gaguuccaua gcuucuucuu 120
//
ID ath-MIR391 standard; RNA; ATH; 206 BP.
XX
AC MI0001002;
XX
DE Arabidopsis thaliana miR391 stem-loop
XX
RN [1]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [2]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [3]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP1728; miR391.
XX
FH Key Location/Qualifiers
FH
FT miRNA 68..88
FT /accession="MIMAT0000933"
FT /product="ath-miR391-5p"
FT /evidence=experimental
FT /experiment="cloned [1], 454 [2], Northern [2], Illumina
FT [3]"
FT miRNA 119..139
FT /accession="MIMAT0031904"
FT /product="ath-miR391-3p"
FT /evidence=not_experimental
XX
SQ Sequence 206 BP; 61 A; 41 C; 38 G; 0 T; 66 other;
uagagugauu acacauacaa guggucuugc uucuucuaug guuuuaaaac ugcaaauaaa 60
gauuugcuuc gcaggagaga uagcgccauc accucuucua agaaguuaac uaguggugac 120
gguaucucuc cuacguagca auccuuauau augcaucuua auacggagag aucaagguau 180
uucaguuguu caauaaucac ccucua 206
//
ID ath-MIR393a standard; RNA; ATH; 133 BP.
XX
AC MI0001003;
XX
DE Arabidopsis thaliana miR393a stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
RN [3]
RX PUBMED; 15345049.
RA Wang XJ, Reyes JL, Chua NH, Gaasterland T;
RT "Prediction and identification of Arabidopsis thaliana microRNAs and their
RT mRNA targets";
RL Genome Biol. 5:R65(2004).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
CC This sequence belongs to the miR393 family of miRNAs, which are predicted
CC to target mRNAs coding for F-box proteins and bHLH transcription factors
CC [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0000934"
FT /product="ath-miR393a-5p"
FT /evidence=experimental
FT /experiment="5'RACE [1], Northern [1,3], PCR [1], cloned
FT [2], 454 [4], MPSS [4-5]"
FT miRNA 105..125
FT /accession="MIMAT0031905"
FT /product="ath-miR393a-3p"
FT /evidence=not_experimental
XX
SQ Sequence 133 BP; 39 A; 24 C; 23 G; 0 T; 47 other;
agaggaagga uccaaaggga ucgcauugau ccuaauuaag gugaauucuc cccauauuuu 60
cuuuauaauu ggcaaauaaa ucacaaaaau uugcuugguu uuggaucaug cuaucucuuu 120
ggauucaucc uuc 133
//
ID ath-MIR393b standard; RNA; ATH; 160 BP.
XX
AC MI0001004;
XX
DE Arabidopsis thaliana miR393b stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
RN [3]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 24119003.
RA Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi
RA GM, Gutierrez RA;
RT "Integrated RNA-seq and sRNA-seq analysis identifies novel
RT nitrate-responsive genes in Arabidopsis thaliana roots";
RL BMC Genomics. 14:701(2013).
XX
CC This sequence belongs to the miR393 family of miRNAs, which are predicted
CC to target mRNAs coding for F-box proteins and bHLH transcription factors
CC [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0000935"
FT /product="ath-miR393b-5p"
FT /evidence=experimental
FT /experiment="5'RACE [1], Northern [1-2], PCR [1], cloned
FT [2], 454 [3], MPSS [3-4]"
FT miRNA 132..152
FT /accession="MIMAT0031906"
FT /product="ath-miR393b-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 160 BP; 48 A; 30 C; 24 G; 0 T; 58 other;
agagaaagga uccaaaggga ucgcauugau ccuaauuaag cugauuuauu ccccaauaau 60
uguuuuuuuu uuccuucuca aucgaaagau ggaagaaaaa caaauuccaa acauuuugcu 120
uacuuuuccg gaucaugcga ucucuuugga uucauucuuu 160
//
ID ath-MIR394a standard; RNA; ATH; 117 BP.
XX
AC MI0001005;
XX
DE Arabidopsis thaliana miR394a stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
CC This sequence belongs to the miR394 family of miRNAs, which are predicted
CC to target mRNAs coding for F-box proteins [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..33
FT /accession="MIMAT0000936"
FT /product="ath-miR394a"
FT /evidence=experimental
FT /experiment="5'RACE [1-2], Northern [1], PCR [1], 454 [3],
FT MPSS [3]"
XX
SQ Sequence 117 BP; 30 A; 21 C; 25 G; 0 T; 41 other;
cuuacaguca ucuuuggcau ucuguccacc uccuucuaua cauauaugca uguguauaua 60
uauaugcguu ucgugugaaa gaaggaggug gguauacugc caauagagau cuguuag 117
//
ID ath-MIR394b standard; RNA; ATH; 121 BP.
XX
AC MI0001006;
XX
DE Arabidopsis thaliana miR394b stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [3]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
CC This sequence belongs to the miR394 family of miRNAs, which are predicted
CC to target mRNAs coding for F-box proteins [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..33
FT /accession="MIMAT0000937"
FT /product="ath-miR394b-5p"
FT /evidence=experimental
FT /experiment="5'RACE [1], Northern [1], PCR [1], 454 [2-3],
FT MPSS [2]"
FT miRNA 90..110
FT /accession="MIMAT0031907"
FT /product="ath-miR394b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 121 BP; 28 A; 23 C; 28 G; 0 T; 42 other;
cuuacagaga ucuuuggcau ucuguccacc uccucucucu auauuuaugu guaauaagug 60
uacguaucua cgguguguuu cguaagagga ggugggcaua cugccaauag agaucuguua 120
g 121
//
ID ath-MIR395a standard; RNA; ATH; 93 BP.
XX
AC MI0001007;
XX
DE Arabidopsis thaliana miR395a stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [3]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [4]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
CC This sequence belongs to the miR395 family of miRNAs, which are predicted
CC to target mRNAs coding for ATP sulphurylases [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 63..83
FT /accession="MIMAT0000938"
FT /product="ath-miR395a"
FT /evidence=experimental
FT /experiment="5'RACE [1], Northern [1], PCR [1], MPSS [2],
FT 454 [3], Illumina [4]"
XX
SQ Sequence 93 BP; 22 A; 21 C; 20 G; 0 T; 30 other;
augucuccua gaguuccucu gagcacuuca uuggggauac aauuuuucua aaugauuauc 60
cacugaagug uuugggggaa cucccggacc cau 93
//
ID ath-MIR395b standard; RNA; ATH; 100 BP.
XX
AC MI0001008;
XX
DE Arabidopsis thaliana miR395b stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [3]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [4]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
CC This sequence belongs to the miR395 family of miRNAs, which are predicted
CC to target mRNAs coding for ATP sulphurylases [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 70..90
FT /accession="MIMAT0000939"
FT /product="ath-miR395b"
FT /evidence=experimental
FT /experiment="5'RACE [1], Northern [1], PCR [1], MPSS [2],
FT 454 [3], Illumina [4]"
XX
SQ Sequence 100 BP; 24 A; 21 C; 21 G; 0 T; 34 other;
auguccccau gaguucccuu uaacgcuuca uuguuaaaua cucaaagcca cauugguuug 60
uauacaacac ugaaguguuu ggggggacuc uuggugucau 100
//
ID ath-MIR395c standard; RNA; ATH; 100 BP.
XX
AC MI0001009;
XX
DE Arabidopsis thaliana miR395c stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
CC This sequence belongs to the miR395 family of miRNAs, which are predicted
CC to target mRNAs coding for ATP sulphurylases [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 70..90
FT /accession="MIMAT0000940"
FT /product="ath-miR395c"
FT /evidence=experimental
FT /experiment="5'RACE [1-2], Northern [1], PCR [1], MPSS
FT [3], 454 [4], Illumina [5]"
XX
SQ Sequence 100 BP; 24 A; 19 C; 22 G; 0 T; 35 other;
auguccacau gaguucccuu uaacgcuuca uuguugaaua cucaaagcca cauugguuug 60
uauauaacac ugaaguguuu ggggggacuc uuggugucau 100
//
ID ath-MIR395d standard; RNA; ATH; 100 BP.
XX
AC MI0001010;
XX
DE Arabidopsis thaliana miR395d stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [3]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [4]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
CC This sequence belongs to the miR395 family of miRNAs, which are predicted
CC to target mRNAs coding for ATP sulphurylases [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 70..90
FT /accession="MIMAT0000941"
FT /product="ath-miR395d"
FT /evidence=experimental
FT /experiment="5'RACE [1], Northern [1], PCR [1], MPSS [2],
FT 454 [3], Illumina [4]"
XX
SQ Sequence 100 BP; 26 A; 20 C; 20 G; 0 T; 34 other;
auguccucua gaguucuccu gaacacuuca uuggaaauuu guuauucagu aagcuaacag 60
uuaauuccac ugaaguguuu gggggaacuc ccgaugucau 100
//
ID ath-MIR395e standard; RNA; ATH; 95 BP.
XX
AC MI0001011;
XX
DE Arabidopsis thaliana miR395e stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
CC This sequence belongs to the miR395 family of miRNAs, which are predicted
CC to target mRNAs coding for ATP sulphurylases [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 65..85
FT /accession="MIMAT0000942"
FT /product="ath-miR395e"
FT /evidence=experimental
FT /experiment="5'RACE [1-2], Northern [1], PCR [1], MPSS
FT [3], 454 [4], Illumina [5]"
XX
SQ Sequence 95 BP; 23 A; 15 C; 21 G; 0 T; 36 other;
auguuuucua gaguuccucu gagcacuuca uuggagauac aauuuuuuau aaaauaguuu 60
ucuacugaag uguuuggggg aacucccggg cugau 95
//
ID ath-MIR395f standard; RNA; ATH; 112 BP.
XX
AC MI0001012;
XX
DE Arabidopsis thaliana miR395f stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [3]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [4]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
CC This sequence belongs to the miR395 family of miRNAs, which are predicted
CC to target mRNAs coding for ATP sulphurylases [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 82..102
FT /accession="MIMAT0000943"
FT /product="ath-miR395f"
FT /evidence=experimental
FT /experiment="5'RACE [1], Northern [1], PCR [1], MPSS [2],
FT 454 [3], Illumina [4]"
XX
SQ Sequence 112 BP; 27 A; 24 C; 22 G; 0 T; 39 other;
auguccccuu gaguucccuu aaacgcuuca uuguucauac uuuguuauca ucuaucgauc 60
gaucaaucaa ucugaugaac acugaagugu uuggggggac ucuaggugac au 112
//
ID ath-MIR396a standard; RNA; ATH; 151 BP.
XX
AC MI0001013;
XX
DE Arabidopsis thaliana miR396a stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 24119003.
RA Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi
RA GM, Gutierrez RA;
RT "Integrated RNA-seq and sRNA-seq analysis identifies novel
RT nitrate-responsive genes in Arabidopsis thaliana roots";
RL BMC Genomics. 14:701(2013).
XX
CC This sequence belongs to the miR396 family of miRNAs, which are predicted
CC to target mRNAs coding for Growth Regulating Factor (GRF) transcription
CC factors, rhodenase-like proteins, and kinesin-like protein B [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0000944"
FT /product="ath-miR396a-5p"
FT /evidence=experimental
FT /experiment="5'RACE [1-2], Northern [1], PCR [1], 454 [3],
FT MPSS [3]"
FT miRNA 123..143
FT /accession="MIMAT0031908"
FT /product="ath-miR396a-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 151 BP; 36 A; 29 C; 22 G; 0 T; 64 other;
cucuguauuc uuccacagcu uucuugaacu gcaaaacuuc uucagauuuu uuuuuuuuuc 60
uuuugauauc ucuuacgcau aaaauaguga uuuucuucau aucucugcuc gauugauuug 120
cgguucaaua aagcuguggg aagauacaga c 151
//
ID ath-MIR396b standard; RNA; ATH; 135 BP.
XX
AC MI0001014;
XX
DE Arabidopsis thaliana miR396b stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 15345049.
RA Wang XJ, Reyes JL, Chua NH, Gaasterland T;
RT "Prediction and identification of Arabidopsis thaliana microRNAs and their
RT mRNA targets";
RL Genome Biol. 5:R65(2004).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
CC This sequence belongs to the miR396 family of miRNAs, which are predicted
CC to target mRNAs coding for Growth Regulating Factor (GRF) transcription
CC factors, rhodenase-like proteins, and kinesin-like protein B [1]. The
CC mature sequence reported in [2] is offset by 1 nt with respect to the
CC sequence shown here.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0000945"
FT /product="ath-miR396b-5p"
FT /evidence=experimental
FT /experiment="5'RACE [1], Northern [1-2], PCR [1], 454 [3],
FT MPSS [3]"
FT miRNA 107..127
FT /accession="MIMAT0031909"
FT /product="ath-miR396b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 135 BP; 47 A; 21 C; 20 G; 0 T; 47 other;
ggucauacuu uuccacagcu uucuugaacu uucuuuuuca uuuccauugu uuuuuucuua 60
aacaaaagua agaagaaaaa aaacuuuaag auuaagcauu uuggaagcuc aagaaagcug 120
ugggaaaaca ugaca 135
//
ID ath-MIR397a standard; RNA; ATH; 107 BP.
XX
AC MI0001015;
XX
DE Arabidopsis thaliana miR397a stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
DR ASRP; ASRP1794; miR397.
XX
CC This sequence belongs to the miR397 family of miRNAs, which are predicted
CC to target mRNAs coding for laccases and beta-6 tubulin [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0000946"
FT /product="ath-miR397a"
FT /evidence=experimental
FT /experiment="5'RACE [1], PCR [1], cloned [2-3], 454 [4-5]"
XX
SQ Sequence 107 BP; 28 A; 13 C; 21 G; 0 T; 45 other;
ugaaugaaca ucauugagug cagcguugau guaauuucgu uuuguuuuuc auuguugaau 60
ggauuaaaag aauuuauacc agcguugcgc ucaauuaugu uuuucua 107
//
ID ath-MIR397b standard; RNA; ATH; 109 BP.
XX
AC MI0001016;
XX
DE Arabidopsis thaliana miR397b stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
CC This sequence belongs to the miR397 family of miRNAs, which are predicted
CC to target mRNAs coding for laccases and beta-6 tubulin [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0000947"
FT /product="ath-miR397b"
FT /evidence=experimental
FT /experiment="5'RACE [1,3], PCR [1], cloned [2], Northern
FT [2], 454 [4-5]"
XX
SQ Sequence 109 BP; 33 A; 12 C; 16 G; 0 T; 48 other;
ugaaugaaca ucauugagug caucguugau guaauuuuac uuauuuuauu ccauuguuga 60
auuaauuaaa gaaguauaua ucagcguugc auucaauuau guuuuucua 109
//
ID ath-MIR398a standard; RNA; ATH; 105 BP.
XX
AC MI0001017;
XX
DE Arabidopsis thaliana miR398a stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 24119003.
RA Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi
RA GM, Gutierrez RA;
RT "Integrated RNA-seq and sRNA-seq analysis identifies novel
RT nitrate-responsive genes in Arabidopsis thaliana roots";
RL BMC Genomics. 14:701(2013).
XX
DR ASRP; ASRP1994; miR398.
XX
CC This sequence belongs to the miR398 family of miRNAs, which are predicted
CC to target mRNAs coding for copper superoxide dismutases and cytochrome C
CC oxidase subunit V [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0031910"
FT /product="ath-miR398a-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 75..95
FT /accession="MIMAT0000948"
FT /product="ath-miR398a-3p"
FT /evidence=experimental
FT /experiment="5'RACE [1], Northern [1], PCR [1], cloned
FT [2], 454 [3-4], MPSS [3]"
XX
SQ Sequence 105 BP; 27 A; 23 C; 18 G; 0 T; 37 other;
ugaaauuuca aaggaguggc augugaacac auauccuaug guuucuucaa auuuccauug 60
aaaccauuga guuuuguguu cucaggucac cccuuugaau cuccc 105
//
ID ath-MIR398b standard; RNA; ATH; 116 BP.
XX
AC MI0001018;
XX
DE Arabidopsis thaliana miR398b stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
CC This sequence belongs to the miR398 family of miRNAs, which are predicted
CC to target mRNAs coding for copper superoxide dismutases and cytochrome C
CC oxidase subunit V [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0031911"
FT /product="ath-miR398b-5p"
FT /evidence=not_experimental
FT miRNA 86..106
FT /accession="MIMAT0000949"
FT /product="ath-miR398b-3p"
FT /evidence=experimental
FT /experiment="5'RACE [1], Northern [1-2], PCR [1], cloned
FT [2-3], 3'RACE [3], 454 [4-5], MPSS [4]"
XX
SQ Sequence 116 BP; 26 A; 28 C; 27 G; 0 T; 35 other;
uggaucucga caggguugau augagaacac acgaguaauc aacggcugua augacgcuac 60
gucauuguua cagcucucgu uuucaugugu ucucagguca ccccugcuga gcucuu 116
//
ID ath-MIR398c standard; RNA; ATH; 115 BP.
XX
AC MI0001019;
XX
DE Arabidopsis thaliana miR398c stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
CC This sequence belongs to the miR398 family of miRNAs, which are predicted
CC to target mRNAs coding for copper superoxide dismutases and cytochrome C
CC oxidase subunit V [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0031912"
FT /product="ath-miR398c-5p"
FT /evidence=not_experimental
FT miRNA 85..105
FT /accession="MIMAT0000950"
FT /product="ath-miR398c-3p"
FT /evidence=experimental
FT /experiment="5'RACE [1,3], Northern [1-2], PCR [1], cloned
FT [2-3], 454 [4-5], MPSS [4]"
XX
SQ Sequence 115 BP; 27 A; 30 C; 26 G; 0 T; 32 other;
uggaucucga caggguugau augagaacac acgagcaauc aacggcuaua acgacgcuac 60
gucauuguua cagcucucgu uucauguguu cucaggucac cccugcugag cucuu 115
//
ID ath-MIR399a standard; RNA; ATH; 123 BP.
XX
AC MI0001020;
XX
DE Arabidopsis thaliana miR399a stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [3]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [4]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
CC This sequence belongs to the miR399 family of miRNAs, which are predicted
CC to target mRNAs coding for a phosphatase transporter [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 93..113
FT /accession="MIMAT0000951"
FT /product="ath-miR399a"
FT /evidence=experimental
FT /experiment="PCR [1], 454 [2-3], MPSS [2], Illumina [4]"
XX
SQ Sequence 123 BP; 33 A; 22 C; 22 G; 0 T; 46 other;
aaaugcauua caggguaaga ucucuauugg caggaaacca uuacuuagau cuuugcaucu 60
cuuuaugcau ugcuuuuaau uagugaguua ucugccaaag gagauuugcc cuguaauucu 120
ucu 123
//
ID ath-MIR399b standard; RNA; ATH; 135 BP.
XX
AC MI0001021;
XX
DE Arabidopsis thaliana miR399b stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
CC This sequence belongs to the miR399 family of miRNAs, which are predicted
CC to target mRNAs coding for a phosphatase transporter [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 105..125
FT /accession="MIMAT0000952"
FT /product="ath-miR399b"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2-3], 5'RACE [3], 454 [4-5],
FT MPSS [4], Illumina [6]"
XX
SQ Sequence 135 BP; 40 A; 30 C; 24 G; 0 T; 41 other;
ucacuaguuu uagggcgccu cuccauuggc agguccuuua cuuccaaaua uacacauaca 60
uauaugaaua ucgaaaauuu ccgaugaucg auuuauaaau gaccugccaa aggagaguug 120
cccugaaacu gguuc 135
//
ID ath-MIR399c standard; RNA; ATH; 114 BP.
XX
AC MI0001022;
XX
DE Arabidopsis thaliana miR399c stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
RN [3]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [4]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [5]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [6]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
CC This sequence belongs to the miR399 family of miRNAs, which are predicted
CC to target mRNAs coding for a phosphatase transporter [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031913"
FT /product="ath-miR399c-5p"
FT /evidence=not_experimental
FT miRNA 84..104
FT /accession="MIMAT0000953"
FT /product="ath-miR399c-3p"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2], 5'RACE [3], 454 [4-5],
FT MPSS [4], Illumina [6]"
XX
SQ Sequence 114 BP; 21 A; 23 C; 29 G; 0 T; 41 other;
ggagcaguaa uagggcaucu uucuauuggc aggcgacuug gcuauuugua ucuuuugugu 60
ucuugacuau uggcuauguc acuugccaaa ggagaguugc ccugucacug cuuc 114
//
ID ath-MIR399d standard; RNA; ATH; 100 BP.
XX
AC MI0001023;
XX
DE Arabidopsis thaliana miR399d stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
CC This sequence belongs to the miR399 family of miRNAs, which are predicted
CC to target mRNAs coding for a phosphatase transporter [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 70..90
FT /accession="MIMAT0000954"
FT /product="ath-miR399d"
FT /evidence=experimental
FT /experiment="PCR [1], 5'RACE [2], 454 [3-4], MPSS [3],
FT Illumina [5]"
XX
SQ Sequence 100 BP; 26 A; 23 C; 24 G; 0 T; 27 other;
gguuggauua cugggcgaau acuccuaugg cagaucgcau uggcuagaua ugcaaguaaa 60
augcuucucu gccaaaggag auuugccccg caauucaucc 100
//
ID ath-MIR399e standard; RNA; ATH; 109 BP.
XX
AC MI0001024;
XX
DE Arabidopsis thaliana miR399e stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [3]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
CC This sequence belongs to the miR399 family of miRNAs, which are predicted
CC to target mRNAs coding for a phosphatase transporter [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 79..99
FT /accession="MIMAT0000955"
FT /product="ath-miR399e"
FT /evidence=experimental
FT /experiment="PCR [1], MPSS [2], Illumina [3]"
XX
SQ Sequence 109 BP; 27 A; 24 C; 22 G; 0 T; 36 other;
gaaagcauua cagggcgaau ccucuauugg caguggaagu ugaugacccu uauauguuau 60
uuucucauca uuuuccucug ccaaaggaga uuugccucgc aaugcuuca 109
//
ID ath-MIR399f standard; RNA; ATH; 118 BP.
XX
AC MI0001025;
XX
DE Arabidopsis thaliana miR399f stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
CC This sequence belongs to the miR399 family of miRNAs, which are predicted
CC to target mRNAs coding for a phosphatase transporter [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 88..108
FT /accession="MIMAT0000956"
FT /product="ath-miR399f"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2], Northern [2], 454 [3-4],
FT MPSS [3], Illumina [5]"
XX
SQ Sequence 118 BP; 31 A; 24 C; 24 G; 0 T; 39 other;
auaugcauua cagggcaaga ucaccauugg cagagaucua uuacuucauu cuugcaucau 60
augcauaaau guuuguggug agcucucugc caaaggagau uugcccggua auucucuu 118
//
ID osa-MIR393a standard; RNA; OSA; 115 BP.
XX
AC MI0001026;
XX
DE Oryza sativa miR393 stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence belongs to the miR393 family of miRNAs, which are predicted
CC to target mRNAs coding for F-box proteins and bHLH transcription factors
CC [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0000957"
FT /product="osa-miR393a"
FT /evidence=not_experimental
FT /similarity="MI0001003"
XX
SQ Sequence 115 BP; 20 A; 33 C; 30 G; 0 T; 32 other;
uggggaagca uccaaaggga ucgcauugau ccuucaucgc ucucgcucgc uuccauggcg 60
gucgucgucu acaagcagcu ugacggauca ugcgauccuu uuggaggcuu ccucu 115
//
ID osa-MIR394 standard; RNA; OSA; 110 BP.
XX
AC MI0001027;
XX
DE Oryza sativa miR394 stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence belongs to the miR394 family of miRNAs, which are predicted
CC to target mRNAs coding for F-box proteins [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..33
FT /accession="MIMAT0000958"
FT /product="osa-miR394"
FT /evidence=not_experimental
FT /similarity="MI0001005"
XX
SQ Sequence 110 BP; 24 A; 24 C; 28 G; 0 T; 34 other;
uacugagagu ucuuuggcau ucuguccacc uccuugucga auccucagag acagaaaucu 60
cauaucuguu gaucuuggag gugggcauac ugccaaugga gcuguguagg 110
//
ID osa-MIR395b standard; RNA; OSA; 86 BP.
XX
AC MI0001028;
XX
DE Oryza sativa miR395b stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16117853.
RA Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA,
RA Mao L;
RT "Molecular evolution of the rice miR395 gene family";
RL Cell Res. 15:631-638(2005).
XX
CC This sequence belongs to the miR395 family of miRNAs, which are predicted
CC to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice
CC miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been
CC renamed to reflect this arrangement [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..76
FT /accession="MIMAT0000959"
FT /product="osa-miR395b"
FT /evidence=not_experimental
FT /similarity="MI0001007"
XX
SQ Sequence 86 BP; 18 A; 17 C; 24 G; 0 T; 27 other;
gagucccuag gaguuccuuu caagcacuuu acgacacacu guauugagag uugucgugaa 60
guguuugggg gaacucuuag ugucgc 86
//
ID osa-MIR395d standard; RNA; OSA; 88 BP.
XX
AC MI0001029;
XX
DE Oryza sativa miR395d stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16117853.
RA Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA,
RA Mao L;
RT "Molecular evolution of the rice miR395 gene family";
RL Cell Res. 15:631-638(2005).
XX
CC This sequence belongs to the miR395 family of miRNAs, which are predicted
CC to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice
CC miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been
CC renamed to reflect this arrangement [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 58..78
FT /accession="MIMAT0000960"
FT /product="osa-miR395d"
FT /evidence=not_experimental
FT /similarity="MI0001007"
XX
SQ Sequence 88 BP; 19 A; 21 C; 20 G; 0 T; 28 other;
guauugucgu gaguucccuu caagcacuuc acguggcacu aucucaaugc cuacuaugug 60
aaguguuugg gggaacucuc gauaucac 88
//
ID osa-MIR395e standard; RNA; OSA; 88 BP.
XX
AC MI0001030;
XX
DE Oryza sativa miR395e stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16117853.
RA Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA,
RA Mao L;
RT "Molecular evolution of the rice miR395 gene family";
RL Cell Res. 15:631-638(2005).
XX
CC This sequence belongs to the miR395 family of miRNAs, which are predicted
CC to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice
CC miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been
CC renamed to reflect this arrangement [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 58..78
FT /accession="MIMAT0000961"
FT /product="osa-miR395e"
FT /evidence=not_experimental
FT /similarity="MI0001007"
XX
SQ Sequence 88 BP; 19 A; 20 C; 21 G; 0 T; 28 other;
guauuaucga gaguucccuu caaccacuuc acguggcacu guuucaaggc cuauugugug 60
aaguguuugg gggaacucuc gauaucac 88
//
ID osa-MIR395g standard; RNA; OSA; 86 BP.
XX
AC MI0001031;
XX
DE Oryza sativa miR395g stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16117853.
RA Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA,
RA Mao L;
RT "Molecular evolution of the rice miR395 gene family";
RL Cell Res. 15:631-638(2005).
XX
CC This sequence belongs to the miR395 family of miRNAs, which are predicted
CC to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice
CC miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been
CC renamed to reflect this arrangement [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..76
FT /accession="MIMAT0000962"
FT /product="osa-miR395g"
FT /evidence=not_experimental
FT /similarity="MI0001007"
XX
SQ Sequence 86 BP; 18 A; 20 C; 20 G; 0 T; 28 other;
guaucaccgu gaguucccuu cgaacacuuc acguggcacu auuucaaugc cuauugugaa 60
guguuugggg gaacucucga ugucau 86
//
ID osa-MIR395h standard; RNA; OSA; 112 BP.
XX
AC MI0001032;
XX
DE Oryza sativa miR395h stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16117853.
RA Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA,
RA Mao L;
RT "Molecular evolution of the rice miR395 gene family";
RL Cell Res. 15:631-638(2005).
XX
CC This sequence belongs to the miR395 family of miRNAs, which are predicted
CC to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice
CC miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been
CC renamed to reflect this arrangement [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 82..102
FT /accession="MIMAT0000963"
FT /product="osa-miR395h"
FT /evidence=not_experimental
FT /similarity="MI0001007"
XX
SQ Sequence 112 BP; 25 A; 24 C; 29 G; 0 T; 34 other;
uuguuaccug gaguuuccuc aacacacuuc acaucugcua ggcccuauua caauugcgca 60
auguggaguc ugcaauuggu agugaagugu uugggggaac ucuagguggc ac 112
//
ID osa-MIR395i standard; RNA; OSA; 99 BP.
XX
AC MI0001033;
XX
DE Oryza sativa miR395i stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16117853.
RA Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA,
RA Mao L;
RT "Molecular evolution of the rice miR395 gene family";
RL Cell Res. 15:631-638(2005).
XX
CC This sequence belongs to the miR395 family of miRNAs, which are predicted
CC to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice
CC miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been
CC renamed to reflect this arrangement [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 69..89
FT /accession="MIMAT0000964"
FT /product="osa-miR395i"
FT /evidence=not_experimental
FT /similarity="MI0001007"
XX
SQ Sequence 99 BP; 24 A; 18 C; 25 G; 0 T; 32 other;
guuuuaccgg gaguucucuu caagcacuuc acguagagcu uucuauugac auggagcuuu 60
agaacaaugu gaaguguuug ggggaacucu ugguaccaa 99
//
ID osa-MIR395j standard; RNA; OSA; 112 BP.
XX
AC MI0001034;
XX
DE Oryza sativa miR395j stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16117853.
RA Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA,
RA Mao L;
RT "Molecular evolution of the rice miR395 gene family";
RL Cell Res. 15:631-638(2005).
XX
CC This sequence belongs to the miR395 family of miRNAs, which are predicted
CC to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice
CC miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been
CC renamed to reflect this arrangement [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 82..102
FT /accession="MIMAT0000965"
FT /product="osa-miR395j"
FT /evidence=not_experimental
FT /similarity="MI0001007"
XX
SQ Sequence 112 BP; 28 A; 23 C; 28 G; 0 T; 33 other;
guguucccaa gaguuccuug caagcacuuc acauagaacu ucuguuacuc ucauguaaca 60
uugggaacuu gagaagcuac ugugaagugu uugggggaac ucuagguggc ac 112
//
ID osa-MIR395k standard; RNA; OSA; 99 BP.
XX
AC MI0001035;
XX
DE Oryza sativa miR395k stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16117853.
RA Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA,
RA Mao L;
RT "Molecular evolution of the rice miR395 gene family";
RL Cell Res. 15:631-638(2005).
XX
CC This sequence belongs to the miR395 family of miRNAs, which are predicted
CC to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice
CC miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been
CC renamed to reflect this arrangement [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 69..89
FT /accession="MIMAT0000966"
FT /product="osa-miR395k"
FT /evidence=not_experimental
FT /similarity="MI0001007"
XX
SQ Sequence 99 BP; 24 A; 16 C; 25 G; 0 T; 34 other;
guuuuaucgg gaguuuccuu caagcacuuc acguagagcu uucuauugau auggagcuuu 60
ggaacaaugu gaaguguuug ggggaacucu ugauaccaa 99
//
ID osa-MIR395l standard; RNA; OSA; 94 BP.
XX
AC MI0001036;
XX
DE Oryza sativa miR395l stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16117853.
RA Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA,
RA Mao L;
RT "Molecular evolution of the rice miR395 gene family";
RL Cell Res. 15:631-638(2005).
XX
CC This sequence belongs to the miR395 family of miRNAs, which are predicted
CC to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice
CC miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been
CC renamed to reflect this arrangement [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 74..94
FT /accession="MIMAT0000967"
FT /product="osa-miR395l"
FT /evidence=not_experimental
FT /similarity="MI0001007"
XX
SQ Sequence 94 BP; 23 A; 20 C; 19 G; 0 T; 32 other;
gcguuccuuc caagcacuuc acacagagcu uuuauuucuc ucacaucgau ugagaacuua 60
auuagaagcu uuugugaagu guuuggggga acuc 94
//
ID osa-MIR395s standard; RNA; OSA; 86 BP.
XX
AC MI0001037;
XX
DE Oryza sativa miR395s stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16117853.
RA Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA,
RA Mao L;
RT "Molecular evolution of the rice miR395 gene family";
RL Cell Res. 15:631-638(2005).
XX
CC This sequence belongs to the miR395 family of miRNAs, which are predicted
CC to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice
CC miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been
CC renamed to reflect this arrangement [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..76
FT /accession="MIMAT0000968"
FT /product="osa-miR395s"
FT /evidence=not_experimental
FT /similarity="MI0001007"
XX
SQ Sequence 86 BP; 17 A; 21 C; 20 G; 0 T; 28 other;
guaucaccgu gaguucccuu caagcacuuc acguggcacu auuucaaugc cuauugugaa 60
guguuugggg gaacucucga uguucc 86
//
ID osa-MIR395t standard; RNA; OSA; 143 BP.
XX
AC MI0001038;
XX
DE Oryza sativa miR395t stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16117853.
RA Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA,
RA Mao L;
RT "Molecular evolution of the rice miR395 gene family";
RL Cell Res. 15:631-638(2005).
XX
CC This sequence belongs to the miR395 family of miRNAs, which are predicted
CC to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice
CC miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been
CC renamed to reflect this arrangement [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 113..133
FT /accession="MIMAT0000969"
FT /product="osa-miR395t"
FT /evidence=not_experimental
FT /similarity="MI0001007"
XX
SQ Sequence 143 BP; 37 A; 33 C; 34 G; 0 T; 39 other;
uuauccacug gaguucuccu caaaccacuu cagcagauag cuagcuaggc cucauugcau 60
ugcaccacug uugcauaacu augagcaugg ggccaaaagu uagcugcuua uagugaagug 120
uuuggggaaa cuccgguugg caa 143
//
ID osa-MIR395c standard; RNA; OSA; 89 BP.
XX
AC MI0001041;
XX
DE Oryza sativa miR395c stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16117853.
RA Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA,
RA Mao L;
RT "Molecular evolution of the rice miR395 gene family";
RL Cell Res. 15:631-638(2005).
XX
CC This sequence belongs to the miR395 family of miRNAs, which are predicted
CC to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice
CC miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been
CC renamed to reflect this arrangement [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 59..79
FT /accession="MIMAT0000972"
FT /product="osa-miR395c"
FT /evidence=not_experimental
FT /similarity="MI0001011"
XX
SQ Sequence 89 BP; 22 A; 14 C; 20 G; 0 T; 33 other;
guauuaucaa gaguucucuu uaagcacuuc auacgacacc auuauuuaua ggguuguugu 60
gaaguguuug gaggaacucu cggugucau 89
//
ID osa-MIR395a standard; RNA; OSA; 142 BP.
XX
AC MI0001042;
XX
DE Oryza sativa miR395a stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16117853.
RA Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA,
RA Mao L;
RT "Molecular evolution of the rice miR395 gene family";
RL Cell Res. 15:631-638(2005).
XX
RN [3]
RX PUBMED; 19903869.
RA Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
RT "Rice MicroRNA effector complexes and targets";
RL Plant Cell. 21:3421-3435(2009).
XX
CC This sequence belongs to the miR395 family of miRNAs, which are predicted
CC to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice
CC miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been
CC renamed to reflect this arrangement [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 112..132
FT /accession="MIMAT0000973"
FT /product="osa-miR395a"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT /similarity="MI0001007"
XX
SQ Sequence 142 BP; 35 A; 32 C; 34 G; 0 T; 41 other;
uuguccacug gaguucuccu caauccacuu caguagauag cuauggcuag gccucauugc 60
auugcacugu uacauaacug ugaucauggg gccaaaagcu agcuauguau agugaagugc 120
uugggggaac uccaguugac ac 142
//
ID osa-MIR395f standard; RNA; OSA; 82 BP.
XX
AC MI0001043;
XX
DE Oryza sativa miR395f stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16117853.
RA Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA,
RA Mao L;
RT "Molecular evolution of the rice miR395 gene family";
RL Cell Res. 15:631-638(2005).
XX
CC This sequence belongs to the miR395 family of miRNAs, which are predicted
CC to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice
CC miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been
CC renamed to reflect this arrangement [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 55..75
FT /accession="MIMAT0000974"
FT /product="osa-miR395f"
FT /evidence=not_experimental
FT /similarity="MI0001007"
XX
SQ Sequence 82 BP; 17 A; 18 C; 18 G; 0 T; 29 other;
uuaucgcggg uucccuucaa ucacuucaca ugguacuauu ucaaggccua cuaugugaau 60
uguuuggggg aacucucgau gu 82
//
ID osa-MIR395u standard; RNA; OSA; 86 BP.
XX
AC MI0001044;
XX
DE Oryza sativa miR395u stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16117853.
RA Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA,
RA Mao L;
RT "Molecular evolution of the rice miR395 gene family";
RL Cell Res. 15:631-638(2005).
XX
CC This sequence belongs to the miR395 family of miRNAs, which are predicted
CC to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice
CC miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been
CC renamed to reflect this arrangement [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..76
FT /accession="MIMAT0000975"
FT /product="osa-miR395u"
FT /evidence=not_experimental
FT /similarity="MI0001007"
XX
SQ Sequence 86 BP; 24 A; 16 C; 21 G; 0 T; 25 other;
acacugccag gaauucccuu caagcaauuc augaaacaau auuuugagag uuguugugaa 60
gcguuugggg gaaaucucag ugucgc 86
//
ID osa-MIR396a standard; RNA; OSA; 154 BP.
XX
AC MI0001046;
XX
DE Oryza sativa miR396a stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence belongs to the miR396 family of miRNAs, which are predicted
CC to target mRNAs coding for Growth Regulating Factor (GRF) transcription
CC factors, rhodenase-like proteins, and kinesin-like protein B [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0000977"
FT /product="osa-miR396a-5p"
FT /evidence=not_experimental
FT /similarity="MI0001013"
FT miRNA 126..145
FT /accession="MIMAT0022863"
FT /product="osa-miR396a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 154 BP; 39 A; 28 C; 39 G; 0 T; 48 other;
cuuugugauc uuccacagcu uucuugaacu gcacgcauga ugaauaaucc cuuugguuaa 60
uugugaucug gucucugaga gaucguaguu agacucgauc gguugcauug gcaucagaga 120
gagcaguuca auaaagcugu gggaaauugc agag 154
//
ID osa-MIR396b standard; RNA; OSA; 116 BP.
XX
AC MI0001047;
XX
DE Oryza sativa miR396b stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence belongs to the miR396 family of miRNAs, which are predicted
CC to target mRNAs coding for Growth Regulating Factor (GRF) transcription
CC factors, rhodenase-like proteins, and kinesin-like protein B [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0000978"
FT /product="osa-miR396b-5p"
FT /evidence=not_experimental
FT /similarity="MI0001013"
FT miRNA 88..107
FT /accession="MIMAT0022864"
FT /product="osa-miR396b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 116 BP; 27 A; 21 C; 29 G; 0 T; 39 other;
cuuugugguc uuccacagcu uucuugaacu gcaucuuuga gagagauuag caucccuaug 60
uguggauuuu gcuugcacga gugugcaguu caauaaagcu gugggaaauu acagag 116
//
ID osa-MIR396c standard; RNA; OSA; 141 BP.
XX
AC MI0001048;
XX
DE Oryza sativa miR396c stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence belongs to the miR396 family of miRNAs, which are predicted
CC to target mRNAs coding for Growth Regulating Factor (GRF) transcription
CC factors, rhodenase-like proteins, and kinesin-like protein B [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0000979"
FT /product="osa-miR396c-5p"
FT /evidence=not_experimental
FT /similarity="MI0001014"
FT miRNA 113..133
FT /accession="MIMAT0022865"
FT /product="osa-miR396c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 141 BP; 39 A; 28 C; 37 G; 0 T; 37 other;
ugccaugccu uuccacagcu uucuugaacu ucucuugugc cucacucacu uucauuacug 60
gagagauaug caucaucagu ggaagcuuau agggagagga gugcaagaag agggucaaga 120
aagcuguggg aagaaauggc a 141
//
ID osa-MIR397a standard; RNA; OSA; 114 BP.
XX
AC MI0001049;
XX
DE Oryza sativa miR397a stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 19903869.
RA Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
RT "Rice MicroRNA effector complexes and targets";
RL Plant Cell. 21:3421-3435(2009).
XX
CC This sequence belongs to the miR397 family of miRNAs, which are predicted
CC to target mRNAs coding for laccases and beta-6 tubulin [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0000980"
FT /product="osa-miR397a"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001015"
XX
SQ Sequence 114 BP; 27 A; 27 C; 28 G; 0 T; 32 other;
aucaaaugca ucauugagug cagcguugau gaacaacggu aaccggucca uguugaugcg 60
cauuuggccg gugaucugau caucaucagc gcuucacuca aucaugcguu uggc 114
//
ID osa-MIR397b standard; RNA; OSA; 118 BP.
XX
AC MI0001050;
XX
DE Oryza sativa miR397b stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 19903869.
RA Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
RT "Rice MicroRNA effector complexes and targets";
RL Plant Cell. 21:3421-3435(2009).
XX
CC This sequence belongs to the miR397 family of miRNAs, which are predicted
CC to target mRNAs coding for laccases and beta-6 tubulin [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0000981"
FT /product="osa-miR397b"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001015"
XX
SQ Sequence 118 BP; 34 A; 29 C; 29 G; 0 T; 26 other;
agggaaggca uuauugagug cagcguugau gaaccugccg gccggcuaaa uuaauuagca 60
agaaagucug aaacuggcuc aaagguucac cagcacugca cccaaucacg ccuuugcu 118
//
ID osa-MIR398a standard; RNA; OSA; 115 BP.
XX
AC MI0001051;
XX
DE Oryza sativa miR398a stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence belongs to the miR398 family of miRNAs, which are predicted
CC to target mRNAs coding for copper superoxide dismutases and cytochrome C
CC oxidase subunit V [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 85..105
FT /accession="MIMAT0000982"
FT /product="osa-miR398a"
FT /evidence=not_experimental
FT /similarity="MI0001017"
XX
SQ Sequence 115 BP; 29 A; 22 C; 30 G; 0 T; 34 other;
gcugaaccca gaggaguggu acugagaaca caggugccaa uacaauguau ggugagcuac 60
uguauaaugg aguaauucug uaacuguguu cucaggucac cccuuugggu uucuu 115
//
ID osa-MIR398b standard; RNA; OSA; 88 BP.
XX
AC MI0001052;
XX
DE Oryza sativa miR398b stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence belongs to the miR398 family of miRNAs, which are predicted
CC to target mRNAs coding for copper superoxide dismutases and cytochrome C
CC oxidase subunit V [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 58..78
FT /accession="MIMAT0000983"
FT /product="osa-miR398b"
FT /evidence=not_experimental
FT /similarity="MI0001017"
XX
SQ Sequence 88 BP; 12 A; 23 C; 32 G; 0 T; 21 other;
ggaguuccua caggggcgag cugggaacac acggugauga ggcggucugg ucuuucgugu 60
guucucaggu cgccccugcc gggacucu 88
//
ID osa-MIR399a standard; RNA; OSA; 149 BP.
XX
AC MI0001053;
XX
DE Oryza sativa miR399a stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence belongs to the miR399 family of miRNAs, which are predicted
CC to target mRNAs coding for a phosphatase transporter [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 119..139
FT /accession="MIMAT0000984"
FT /product="osa-miR399a"
FT /evidence=not_experimental
FT /similarity="MI0001020"
XX
SQ Sequence 149 BP; 38 A; 31 C; 43 G; 0 T; 37 other;
cugugaauua cagggcaguu caccuuuggc acaagggcaa gcaguagaaa ccaugcgugc 60
uugcuagagc uggaaaugau gcugguagca uugcaugguu cagggaucac agaucucgug 120
ccaaaggaga auugcccugc gauuuuguc 149
//
ID osa-MIR399b standard; RNA; OSA; 97 BP.
XX
AC MI0001054;
XX
DE Oryza sativa miR399b stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence belongs to the miR399 family of miRNAs, which are predicted
CC to target mRNAs coding for a phosphatase transporter [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 67..87
FT /accession="MIMAT0000985"
FT /product="osa-miR399b"
FT /evidence=not_experimental
FT /similarity="MI0001020"
XX
SQ Sequence 97 BP; 29 A; 24 C; 26 G; 0 T; 18 other;
gugagaauca cagugcgauu cuccucuggc auggcaugag aggccuaaaa aagagacgca 60
cugccgugcc aaaggagaau ugcccugcca uucagaa 97
//
ID osa-MIR399c standard; RNA; OSA; 110 BP.
XX
AC MI0001055;
XX
DE Oryza sativa miR399c stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence belongs to the miR399 family of miRNAs, which are predicted
CC to target mRNAs coding for a phosphatase transporter [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 80..100
FT /accession="MIMAT0000986"
FT /product="osa-miR399c"
FT /evidence=not_experimental
FT /similarity="MI0001020"
XX
SQ Sequence 110 BP; 27 A; 28 C; 32 G; 0 T; 23 other;
cggcgaauua cagggcgguu ucuccuuugg cacguacgga ggcaaggcau gcggugaaaa 60
aucucuagcu agccaugcgu gccaaaggag aauugcccug cgauucacca 110
//
ID osa-MIR399d standard; RNA; OSA; 286 BP.
XX
AC MI0001056;
XX
DE Oryza sativa miR399d stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence belongs to the miR399 family of miRNAs, which are predicted
CC to target mRNAs coding for a phosphatase transporter [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 256..276
FT /accession="MIMAT0000987"
FT /product="osa-miR399d"
FT /evidence=not_experimental
FT /similarity="MI0001020"
XX
SQ Sequence 286 BP; 72 A; 58 C; 66 G; 0 T; 90 other;
aagacaguag uaggcagcuc uccucuggca ggugcauucu aggugauuuu guaauuguau 60
augcauccaa gguauauaca guccggccau ggugcuacau ugcaaucauc cauaugugau 120
ugcauugugu auauauauac augguggccu uugauagacc aucauauauc gguugguuau 180
gugcauguau guauauacca gcugcuacua gcuuugaucg aucgccaugu agcgauugaa 240
uucaccaaaa cggccugcca aaggagaguu gcccugcgac ugucuu 286
//
ID osa-MIR399e standard; RNA; OSA; 118 BP.
XX
AC MI0001057;
XX
DE Oryza sativa miR399e stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence belongs to the miR399 family of miRNAs, which are predicted
CC to target mRNAs coding for a phosphatase transporter [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 88..108
FT /accession="MIMAT0000988"
FT /product="osa-miR399e"
FT /evidence=not_experimental
FT /similarity="MI0001020"
XX
SQ Sequence 118 BP; 28 A; 32 C; 30 G; 0 T; 28 other;
acaugcauua ccgggugagu cuuccuuggc aguguucgaa ucggcaguac cggucugcaa 60
gugaucgguc aaucaccagu ucaccgcugc caaaggagau uugcccagca augcaacu 118
//
ID osa-MIR399f standard; RNA; OSA; 117 BP.
XX
AC MI0001058;
XX
DE Oryza sativa miR399f stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence belongs to the miR399 family of miRNAs, which are predicted
CC to target mRNAs coding for a phosphatase transporter [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 87..107
FT /accession="MIMAT0000989"
FT /product="osa-miR399f"
FT /evidence=not_experimental
FT /similarity="MI0001025"
XX
SQ Sequence 117 BP; 24 A; 33 C; 26 G; 0 T; 34 other;
ugguggauua ccgggccaug ucuccuuggg cagaggugau cagauugcac acuucacuuc 60
aaccucuugc ucuagcuugu ucucucugcc aaaggagauu ugcccagcaa uccacau 117
//
ID osa-MIR399g standard; RNA; OSA; 119 BP.
XX
AC MI0001059;
XX
DE Oryza sativa miR399g stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence belongs to the miR399 family of miRNAs, which are predicted
CC to target mRNAs coding for a phosphatase transporter [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 89..109
FT /accession="MIMAT0000990"
FT /product="osa-miR399g"
FT /evidence=not_experimental
FT /similarity="MI0001025"
XX
SQ Sequence 119 BP; 28 A; 28 C; 30 G; 0 T; 33 other;
augugcauug cagggcaacu acuccauugg cagagggaug gauuggauau ggauauggcu 60
gaugcuucca uuugauccca ucccuaucug ccaaaggaga uuugcccagc gauucacuc 119
//
ID osa-MIR399h standard; RNA; OSA; 99 BP.
XX
AC MI0001060;
XX
DE Oryza sativa miR399h stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence belongs to the miR399 family of miRNAs, which are predicted
CC to target mRNAs coding for a phosphatase transporter [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 69..89
FT /accession="MIMAT0000991"
FT /product="osa-miR399h"
FT /evidence=not_experimental
FT /similarity="MI0001023"
XX
SQ Sequence 99 BP; 27 A; 30 C; 25 G; 0 T; 17 other;
ccaugcauua cugggcaggu cucccuuggc aguggccgau cgagcugauc aaaccacgca 60
aaagccacug ccaaaggaga cuugcccagc aaugcagau 99
//
ID osa-MIR399i standard; RNA; OSA; 116 BP.
XX
AC MI0001061;
XX
DE Oryza sativa miR399i stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence belongs to the miR399 family of miRNAs, which are predicted
CC to target mRNAs coding for a phosphatase transporter [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 86..106
FT /accession="MIMAT0000992"
FT /product="osa-miR399i"
FT /evidence=not_experimental
FT /similarity="MI0001020"
XX
SQ Sequence 116 BP; 30 A; 27 C; 33 G; 0 T; 26 other;
gugagaauca cagugcaguu cuccucuggc auggagggca agaggagcug aauagcuaau 60
ggaugauaaa cugcuagccu uucccugcca aaggagagcu gcccugccau ucagug 116
//
ID osa-MIR399j standard; RNA; OSA; 106 BP.
XX
AC MI0001062;
XX
DE Oryza sativa miR399j stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence belongs to the miR399 family of miRNAs, which are predicted
CC to target mRNAs coding for a phosphatase transporter [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 76..96
FT /accession="MIMAT0000993"
FT /product="osa-miR399j"
FT /evidence=not_experimental
FT /similarity="MI0001020"
XX
SQ Sequence 106 BP; 22 A; 28 C; 25 G; 0 T; 31 other;
aguccaguuu cagggcuccu cucucuuggc agggagcaug ugaagucuuu uguagcucac 60
ucauuuucag cccucugcca aaggagaguu gcccuaaaac uggacu 106
//
ID osa-MIR399k standard; RNA; OSA; 106 BP.
XX
AC MI0001063;
XX
DE Oryza sativa miR399k stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence belongs to the miR399 family of miRNAs, which are predicted
CC to target mRNAs coding for a phosphatase transporter [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 76..96
FT /accession="MIMAT0000994"
FT /product="osa-miR399k"
FT /evidence=not_experimental
FT /similarity="MI0001023"
XX
SQ Sequence 106 BP; 23 A; 25 C; 28 G; 0 T; 30 other;
agcugcauug cugggcaagu uguccuuugg cagauguugc aguucaucau cgaugccugg 60
ggguuaccag acuacugcca aaggaaauuu gccccggaau ucaucu 106
//
ID ebv-mir-BHRF1-1 standard; RNA; VRL; 66 BP.
XX
AC MI0001064;
XX
DE Epstein Barr virus miR-BHRF1-1 stem-loop
XX
RN [1]
RX PUBMED; 15118162.
RA Pfeffer S, Zavolan M, Grasser FA, Chien M, Russo JJ, Ju J, John B, Enright
RA AJ, Marks D, Sander C, Tuschl T;
RT "Identification of virus-encoded microRNAs";
RL Science. 304:734-736(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
CC Pfeffer et al. cloned 5 miRNAs from a Burkitt's lymphoma cell line (BL41)
CC infected with the B95-8 strain of Epstein-Barr virus [1]. They were all
CC confirmed by Northern blot.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0000995"
FT /product="ebv-miR-BHRF1-1"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
XX
SQ Sequence 66 BP; 16 A; 19 C; 15 G; 0 T; 16 other;
uauuaaccug aucagccccg gaguugccug uuucaucacu aaccccgggc cugaagaggu 60
ugacaa 66
//
ID ebv-mir-BHRF1-2 standard; RNA; VRL; 65 BP.
XX
AC MI0001065;
XX
DE Epstein Barr virus miR-BHRF1-2 stem-loop
XX
RN [1]
RX PUBMED; 15118162.
RA Pfeffer S, Zavolan M, Grasser FA, Chien M, Russo JJ, Ju J, John B, Enright
RA AJ, Marks D, Sander C, Tuschl T;
RT "Identification of virus-encoded microRNAs";
RL Science. 304:734-736(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
CC Pfeffer et al. cloned 5 miRNAs from a Burkitt's lymphoma cell line (BL41)
CC infected with the B95-8 strain of Epstein-Barr virus [1]. They were all
CC confirmed by Northern blot. The mature sequence shown here represents the
CC most commonly cloned form from large-scale cloning studies [2]. The ends
CC of the miRNA may be offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0000996"
FT /product="ebv-miR-BHRF1-2-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
FT miRNA 41..62
FT /accession="MIMAT0000997"
FT /product="ebv-miR-BHRF1-2-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
XX
SQ Sequence 65 BP; 19 A; 11 C; 13 G; 0 T; 22 other;
cuuuuaaauu cuguugcagc agauagcuga uacccaaugu uaucuuuugc ggcagaaauu 60
gaaag 65
//
ID ebv-mir-BHRF1-3 standard; RNA; VRL; 65 BP.
XX
AC MI0001066;
XX
DE Epstein Barr virus miR-BHRF1-3 stem-loop
XX
RN [1]
RX PUBMED; 15118162.
RA Pfeffer S, Zavolan M, Grasser FA, Chien M, Russo JJ, Ju J, John B, Enright
RA AJ, Marks D, Sander C, Tuschl T;
RT "Identification of virus-encoded microRNAs";
RL Science. 304:734-736(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
CC Pfeffer et al. cloned 5 miRNAs from a Burkitt's lymphoma cell line (BL41)
CC infected with the B95-8 strain of Epstein-Barr virus [1]. They were all
CC confirmed by Northern blot. The mature sequence shown here represents the
CC most commonly cloned form from large-scale cloning studies [2]. The ends
CC of the miRNA may be offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..24
FT /accession="MIMAT0000998"
FT /product="ebv-miR-BHRF1-3"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
XX
SQ Sequence 65 BP; 18 A; 14 C; 15 G; 0 T; 18 other;
ucuaacggga aguguguaag cacacacgua auuugcaagc ggugcuucac gcucuucguu 60
aaaau 65
//
ID ebv-mir-BART1 standard; RNA; VRL; 70 BP.
XX
AC MI0001067;
XX
DE Epstein Barr virus miR-BART1 stem-loop
XX
RN [1]
RX PUBMED; 15118162.
RA Pfeffer S, Zavolan M, Grasser FA, Chien M, Russo JJ, Ju J, John B, Enright
RA AJ, Marks D, Sander C, Tuschl T;
RT "Identification of virus-encoded microRNAs";
RL Science. 304:734-736(2004).
XX
RN [2]
RX PUBMED; 16557291.
RA Cai X, Schafer A, Lu S, Bilello JP, Desrosiers RC, Edwards R, Raab-Traub
RA N, Cullen BR;
RT "Epstein-Barr virus microRNAs are evolutionarily conserved and
RT differentially expressed";
RL PLoS Pathog. 2:e23(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
CC Pfeffer et al. cloned 5 miRNAs from a Burkitt's lymphoma cell line (BL41)
CC infected with the B95-8 strain of Epstein-Barr virus [1]. They were all
CC confirmed by Northern blot. The mature sequence shown here represents the
CC most commonly cloned form from large-scale cloning studies [3]. The ends
CC of the miRNA may be offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..29
FT /accession="MIMAT0000999"
FT /product="ebv-miR-BART1-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [1]"
FT miRNA 42..63
FT /accession="MIMAT0003390"
FT /product="ebv-miR-BART1-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
XX
SQ Sequence 70 BP; 14 A; 18 C; 21 G; 0 T; 17 other;
gggggucuua guggaaguga cgugcuguga auacaggucc auagcaccgc uauccacuau 60
gucucgcccg 70
//
ID ebv-mir-BART2 standard; RNA; VRL; 62 BP.
XX
AC MI0001068;
XX
DE Epstein Barr virus miR-BART2 stem-loop
XX
RN [1]
RX PUBMED; 15118162.
RA Pfeffer S, Zavolan M, Grasser FA, Chien M, Russo JJ, Ju J, John B, Enright
RA AJ, Marks D, Sander C, Tuschl T;
RT "Identification of virus-encoded microRNAs";
RL Science. 304:734-736(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
CC Pfeffer et al. cloned 5 miRNAs from a Burkitt's lymphoma cell line (BL41)
CC infected with the B95-8 strain of Epstein-Barr virus [1]. They were all
CC confirmed by Northern blot. The mature miRNA names reflect cloning
CC frequencies from Landgraf et al. [2], and may differ subtly from previous
CC annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..24
FT /accession="MIMAT0001000"
FT /product="ebv-miR-BART2-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
FT miRNA 39..62
FT /accession="MIMAT0004744"
FT /product="ebv-miR-BART2-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 62 BP; 16 A; 12 C; 14 G; 0 T; 20 other;
acuauuuucu gcauucgccc uugcgugucc auuguugcaa ggagcgauuu ggagaaaaua 60
aa 62
//
ID ath-MIR400 standard; RNA; ATH; 102 BP.
XX
AC MI0001069;
XX
DE Arabidopsis thaliana miR400 stem-loop
XX
RN [1]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
RN [2]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [3]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [4]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0001001"
FT /product="ath-miR400"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], 454 [2-3], MPSS
FT [2], Illumina [4]"
XX
SQ Sequence 102 BP; 32 A; 11 C; 22 G; 0 T; 37 other;
ugaggauugu uuaugagagu auuauaaguc acuacauuug guaagcaaag uguuguuucu 60
caaacgaagu gacuuaugau aaucucauga auggauuuug ca 102
//
ID ath-MIR401 standard; RNA; ATH; 250 BP.
XX
AC MI0001070;
XX
DE Arabidopsis thaliana miR401 stem-loop
XX
RN [1]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
FH Key Location/Qualifiers
FH
FT miRNA 108..128
FT /accession="MIMAT0001002"
FT /product="ath-miR401"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 250 BP; 66 A; 57 C; 49 G; 0 T; 78 other;
uauauagacc cuaaaaacgu ccagggacua auaaugcaaa uauggaaauc uucuggggca 60
aacuugagcu ucugaaaacu ugaaagcguu uaggguuuuu gcugggccga aacugguguc 120
gaccgacacc aagagugugu cgcucgacac ucaucgcuga uuccugaacc aaaaucguuc 180
uuaguuuccu uuuccuuagu uuuugcucca aaaugucucc uuaucuccau uguuguccca 240
uugcauagaa 250
//
ID ath-MIR402 standard; RNA; ATH; 309 BP.
XX
AC MI0001071;
XX
DE Arabidopsis thaliana miR402 stem-loop
XX
RN [1]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
RN [2]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [3]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
DR ASRP; ASRP1730; miR402.
XX
FH Key Location/Qualifiers
FH
FT miRNA 67..88
FT /accession="MIMAT0001003"
FT /product="ath-miR402"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], MPSS [2], 454 [3]"
XX
SQ Sequence 309 BP; 90 A; 53 C; 56 G; 0 T; 110 other;
cgugguagau aaguuugagu ugcauagugg cagucuuccu uuguuuguua acccauauuu 60
ucaugauucg aggccuauua aaccucuguu acaucugcuu uuugaaaagu ugucauuuuu 120
cugaaaucuu cuugccucaa uuuccaacag cagauucauc uuucauugga ugauccguua 180
guuuuugaua gaaaaaauga ggugggaaga aauuaagacu gacuucgaaa uagccuuuaa 240
aauagggguu uauagaccuc gaaucauauc aaacgagucu gcuacuaugc uacugaaaac 300
uuuaucaaa 309
//
ID ath-MIR403 standard; RNA; ATH; 135 BP.
XX
AC MI0001072;
XX
DE Arabidopsis thaliana miR403 stem-loop
XX
RN [1]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [4]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [5]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
DR ASRP; ASRP359; miR403.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..47
FT /accession="MIMAT0031914"
FT /product="ath-miR403-5p"
FT /evidence=not_experimental
FT miRNA 103..123
FT /accession="MIMAT0001004"
FT /product="ath-miR403-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1], 3'RACE [2],
FT 5'RACE [2], 454 [3-4], MPSS [3], Illumina [5]"
XX
SQ Sequence 135 BP; 37 A; 21 C; 22 G; 0 T; 55 other;
uugucauuag aagagucgua uuacauguuu ugugcuugaa ucuaauucaa caggcuuuau 60
guaagagauu cuuuaacaau uccuauaauc uuuguuguug gauuagauuc acgcacaaac 120
ucguaaucug ucuuu 135
//
ID ath-MIR404 standard; RNA; ATH; 150 BP.
XX
AC MI0001073;
XX
DE Arabidopsis thaliana miR404 stem-loop
XX
RN [1]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
RN [2]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0001005"
FT /product="ath-miR404"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
XX
SQ Sequence 150 BP; 20 A; 41 C; 48 G; 0 T; 41 other;
uagcauguuc guuucauuaa cgcuggcggu ugcggcagcg gcugcgguag cgguggcggc 60
aaacacuacc gcagguuguu guucguuuug uugccgcaga cgcugccgca gccgcugccg 120
caaccgcagg uuucuuuguu cguuucgacg 150
//
ID ath-MIR405a standard; RNA; ATH; 157 BP.
XX
AC MI0001074;
XX
DE Arabidopsis thaliana miR405a stem-loop
XX
RN [1]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
FH Key Location/Qualifiers
FH
FT miRNA 90..113
FT /accession="MIMAT0001006"
FT /product="ath-miR405a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 157 BP; 50 A; 27 C; 28 G; 0 T; 52 other;
ucaaaauggg uaacccaacc caacccaacu cauaaucaaa ugaguuuaug auuaaaugag 60
uuauggguug acccaacuca uuuuguuaaa ugaguugggu cuaacccaua acucauuuca 120
uuugaugggu ugaguuguua aauggguuaa ccauuua 157
//
ID ath-MIR405b standard; RNA; ATH; 124 BP.
XX
AC MI0001075;
XX
DE Arabidopsis thaliana miR405b stem-loop
XX
RN [1]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
FH Key Location/Qualifiers
FH
FT miRNA 70..93
FT /accession="MIMAT0001007"
FT /product="ath-miR405b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 124 BP; 46 A; 23 C; 15 G; 0 T; 40 other;
uuaacccauu uaacaauuca acccaucaaa ugaaaugagu uauggguuag acccaacuca 60
uuuaacaaaa ugaguugggu cuaacccaua acucauuuaa uuauaaacuc auuugauuau 120
gagu 124
//
ID ath-MIR405d standard; RNA; ATH; 86 BP.
XX
AC MI0001077;
XX
DE Arabidopsis thaliana miR405d stem-loop
XX
RN [1]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..72
FT /accession="MIMAT0001008"
FT /product="ath-miR405d"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 86 BP; 30 A; 16 C; 13 G; 0 T; 27 other;
acccaucaaa ugaaaugagu uauggguuga cccaacucau uuuguuaaau gaguuggguc 60
uaacccauaa cucauuuaau cauaaa 86
//
ID ath-MIR406 standard; RNA; ATH; 200 BP.
XX
AC MI0001078;
XX
DE Arabidopsis thaliana miR406 stem-loop
XX
RN [1]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
FH Key Location/Qualifiers
FH
FT miRNA 107..127
FT /accession="MIMAT0001009"
FT /product="ath-miR406"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 200 BP; 82 A; 24 C; 26 G; 0 T; 68 other;
uaaagucuua auuuuuaguu aucacgauuu agcacauauc aaucuauaga uuugauuuuu 60
cuuuuauuag uucuuaaauu uugauuugag acaguaacua uucaaauaga augcuauugu 120
aauccagaau ccgaaagaaa cgaaucaaaa aaaaaaaaaa cgagucuuca uaguaaaaau 180
cgauuaacua aaaaggaugg 200
//
ID ath-MIR407 standard; RNA; ATH; 263 BP.
XX
AC MI0001079;
XX
DE Arabidopsis thaliana miR407 stem-loop
XX
RN [1]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
CC MIR407a and MIR407b published by Sunkar and Zhu [1] map to the same locus
CC on NC_003071.3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 72..92
FT /accession="MIMAT0001010"
FT /product="ath-miR407"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1]"
XX
SQ Sequence 263 BP; 96 A; 41 C; 37 G; 0 T; 89 other;
ugggaaaaau guuaaaaaaa ucgccaacuu uuaaaaaugg gacaaaaaaa ucgccaacuc 60
cugaaauguc auuuaaauca uauacuuuug guugacuuuu ccagaaagau aauaaagcaa 120
agauucguaa ucaacaaaac uuugcucugu uaucuuucua aagaacucaa ucaaaaguau 180
gugauuaaaa cgacauuuca ggaguuggug auuuuucauc ccauuuuuca aaguuggcaa 240
uuuuuuugac auuuuuucca aug 263
//
ID ath-MIR408 standard; RNA; ATH; 218 BP.
XX
AC MI0001080;
XX
DE Arabidopsis thaliana miR408 stem-loop
XX
RN [1]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
RN [2]
RX PUBMED; 16954541.
RA Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS,
RA Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
RT "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent
RT RNA polymerase-2 mutant";
RL Genome Res. 16:1276-1288(2006).
XX
RN [3]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [4]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
RN [5]
RX PUBMED; 24119003.
RA Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi
RA GM, Gutierrez RA;
RT "Integrated RNA-seq and sRNA-seq analysis identifies novel
RT nitrate-responsive genes in Arabidopsis thaliana roots";
RL BMC Genomics. 14:701(2013).
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..73
FT /accession="MIMAT0031915"
FT /product="ath-miR408-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 120..140
FT /accession="MIMAT0001011"
FT /product="ath-miR408-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], 454 [2-3], MPSS
FT [2], Illumina [4]"
XX
SQ Sequence 218 BP; 59 A; 47 C; 40 G; 0 T; 72 other;
aagguuagau ugguauugca augaaagaag acaaagcggu aaugagagag agacagggaa 60
caagcagagc auggauugag uuuacuaaaa cauuaaacga cucuguuuug ucucuaccca 120
ugcacugccu cuucccuggc ucccucuuuu uuucucuaua uuucucucuc uccuuucauu 180
ucacagcuuu caauggaauu uuauugcuac ugcuaacg 218
//
ID ath-MIR156g standard; RNA; ATH; 103 BP.
XX
AC MI0001082;
XX
DE Arabidopsis thaliana miR156g stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [3]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
CC This sequence is a predicted paralogue of the previously identified miR156
CC family [1], subsequently verified in [2]. It is predicted to target mRNAs
CC coding for Squamosa-promoter Binding Protein (SBP)-like transcription
CC factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..30
FT /accession="MIMAT0001012"
FT /product="ath-miR156g"
FT /evidence=experimental
FT /experiment="454 [2], Illumina [3]"
FT /similarity="MI0000178"
XX
SQ Sequence 103 BP; 22 A; 28 C; 22 G; 0 T; 31 other;
auaacgaagg cgacagaaga gagugagcac acauggcucu uuuucuagca ugcucaugcu 60
cgaaagcucu gcgugcuuac ucucuucuug ucuccugcuc ucu 103
//
ID ath-MIR156h standard; RNA; ATH; 106 BP.
XX
AC MI0001083;
XX
DE Arabidopsis thaliana miR156h stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [3]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
CC This sequence is a predicted paralogue of the previously identified miR156
CC family [1], subsequently verified in [2]. It is predicted to target mRNAs
CC coding for Squamosa-promoter Binding Protein (SBP)-like transcription
CC factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..31
FT /accession="MIMAT0001013"
FT /product="ath-miR156h"
FT /evidence=experimental
FT /experiment="454 [2], Illumina [3]"
FT /similarity="MI0000178"
XX
SQ Sequence 106 BP; 31 A; 22 C; 25 G; 0 T; 28 other;
augaaaaaug uugacagaag aaagagagca caaccuggga uuagcaaaaa gauaguuuug 60
cccuugucgg gagugugcuc ucuuuccuuc ugccaccauc auugcg 106
//
ID ath-MIR158b standard; RNA; ATH; 85 BP.
XX
AC MI0001084;
XX
DE Arabidopsis thaliana miR158b stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [3]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..75
FT /accession="MIMAT0001014"
FT /product="ath-miR158b"
FT /evidence=experimental
FT /experiment="454 [2], Illumina [3]"
FT /similarity="MI0000188"
XX
SQ Sequence 85 BP; 23 A; 17 C; 15 G; 0 T; 30 other;
aucucugugc uucuuugucu acacuuuugg aaaaggugau gauaucauug cuuuucccca 60
aauguagaca aagcaauacc gugau 85
//
ID ath-MIR159c standard; RNA; ATH; 225 BP.
XX
AC MI0001085;
XX
DE Arabidopsis thaliana miR159c stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
CC This sequence is a predicted paralogue of the previously identified
CC miR159/JAW family [1]. It is predicted to target mRNAs coding for MYB and
CC TCP transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 195..215
FT /accession="MIMAT0001015"
FT /product="ath-miR159c"
FT /evidence=experimental
FT /experiment="454 [2]"
FT /similarity="MI0000189"
XX
SQ Sequence 225 BP; 61 A; 50 C; 46 G; 0 T; 68 other;
guguaacaga aggagcuccc uuccuccaaa acgaagagga caagauuuga ggaacuaaaa 60
ugcagaaucu aagaguucau gucuuccuca uagagagugc gcgguguuaa aagcuugaag 120
aaagcacacu uuaaggggau ugcacgaccu cuuagauucu cccucuuucu cuacauauca 180
uucucuucuc uucguuugga uugaagggag cuccuuuucu ucuuc 225
//
ID ath-MIR319c standard; RNA; ATH; 199 BP.
XX
AC MI0001086;
XX
DE Arabidopsis thaliana miR319c stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
RN [3]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
CC This sequence is a predicted paralogue of the previously identified
CC miR159/JAW family [1], subsequently verified in [2,3]. It is predicted to
CC target mRNAs coding for MYB and TCP transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 170..190
FT /accession="MIMAT0001016"
FT /product="ath-miR319c"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2], 454 [3]"
FT /similarity="MI0000544"
XX
SQ Sequence 199 BP; 60 A; 33 C; 46 G; 0 T; 60 other;
uagauauaga aggagauucu uucaguccag ucauggauag aaaaagaaga ggguagaaau 60
aucugccgac ucauccaucc aaacacucgu gguagagaaa cgauaaauuu aaaccgcagu 120
gacuguguga augaugcggg agauauuuuu gauccuucuu uaucuguguu uggacugaag 180
ggagcuccuu cuuuuucua 199
//
ID ath-MIR164c standard; RNA; ATH; 102 BP.
XX
AC MI0001087;
XX
DE Arabidopsis thaliana miR164c stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [3]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
CC This sequence is a predicted paralogue of the previously identified miR164
CC family [1]. It is predicted to target mRNAs coding for NAC domain
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001017"
FT /product="ath-miR164c-5p"
FT /evidence=experimental
FT /experiment="454 [2], Illumina [3]"
FT /similarity="MI0000197"
FT miRNA 74..94
FT /accession="MIMAT0031916"
FT /product="ath-miR164c-3p"
FT /evidence=not_experimental
XX
SQ Sequence 102 BP; 29 A; 23 C; 22 G; 0 T; 28 other;
uaacacuuga uggagaagca gggcacgugc gaacacaaau gaaaucgauc gguacuuguu 60
gaucauauuu ucgcacgugu ucuacuacuc caacacgugu cu 102
//
ID ath-MIR167c standard; RNA; ATH; 160 BP.
XX
AC MI0001088;
XX
DE Arabidopsis thaliana miR167c stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [3]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
CC This sequence is a predicted paralogue of the previously identified miR167
CC family [1], subsequently verified in [2]. It is predicted to target mRNAs
CC coding for Auxin Response Factors (ARF transcription factors).
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0001018"
FT /product="ath-miR167c-5p"
FT /evidence=experimental
FT /experiment="454 [2], Illumina [3]"
FT /similarity="MI0000208"
FT miRNA 130..152
FT /accession="MIMAT0031917"
FT /product="ath-miR167c-3p"
FT /evidence=not_experimental
XX
SQ Sequence 160 BP; 45 A; 26 C; 30 G; 0 T; 59 other;
ccaguagcag uuaagcugcc agcaugaucu ugucuuccuc ucuuagguuu cauauauagu 60
uaauaaauau uuuauauauu ucuuguucuu acaagauuau augaucauag cuuagagaga 120
gagagagacu aggucaugcu gguaguuuca ccugcuaaug 160
//
ID ath-MIR172e standard; RNA; ATH; 125 BP.
XX
AC MI0001089;
XX
DE Arabidopsis thaliana miR172e stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [4]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
CC This sequence is a predicted paralogue of the previously identified miR172
CC family [1]. It is predicted to target mRNAs coding for APETALA2-like
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..32
FT /accession="MIMAT0031918"
FT /product="ath-miR172e-5p"
FT /evidence=not_experimental
FT miRNA 95..115
FT /accession="MIMAT0001019"
FT /product="ath-miR172e-3p"
FT /evidence=experimental
FT /experiment="5'RACE [2], 454 [3], Illumina [4]"
FT /similarity="MI0000215"
XX
SQ Sequence 125 BP; 32 A; 29 C; 30 G; 0 T; 34 other;
guagucgcag augcagcacc auuaagauuc acaagagaug ugguucccuu ugcuuucgcc 60
ucucgauccg cagaaaaggg uuccuuaucg agugggaauc uugaugaugc ugcaucagca 120
aauac 125
//
ID osa-MIR156k standard; RNA; OSA; 106 BP.
XX
AC MI0001090;
XX
DE Oryza sativa miR156k stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR156
CC family [1]. It is predicted to target mRNAs coding for Squamosa-promoter
CC Binding Protein (SBP)-like transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001020"
FT /product="osa-miR156k"
FT /evidence=not_experimental
FT /similarity="MI0000178"
XX
SQ Sequence 106 BP; 23 A; 29 C; 33 G; 0 T; 21 other;
uugagaguga ugacagaaga gagagagcac aacccggcag cagcgacgac ggcggucgcu 60
ucugccaggg ccgugugcuc ucugaucuau cugucauugc cgucca 106
//
ID osa-MIR156l standard; RNA; OSA; 156 BP.
XX
AC MI0001091;
XX
DE Oryza sativa miR156l stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence is a predicted paralogue of the previously identified miR156
CC family [1]. It is predicted to target mRNAs coding for Squamosa-promoter
CC Binding Protein (SBP)-like transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001021"
FT /product="osa-miR156l-5p"
FT /evidence=not_experimental
FT /similarity="MI0000178"
FT miRNA 127..148
FT /accession="MIMAT0022866"
FT /product="osa-miR156l-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 156 BP; 44 A; 24 C; 38 G; 0 T; 50 other;
gcuagggagc cgacagaaga gagugagcau auauaguucu uuccuugcau auguggucau 60
auguguguug acugaagaga uacauauaua uagagagaga gaguucaugu gcuugaagcu 120
auaugugcuc acuucucuuu cugucagcaa auuauc 156
//
ID osa-MIR159a standard; RNA; OSA; 272 BP.
XX
AC MI0001092;
XX
DE Oryza sativa miR159a stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 19055717.
RA Lacombe S, Nagasaki H, Santi C, Duval D, Piegu B, Bangratz M, Breitler JC,
RA Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski
RA WM, Sato Y, Echeverria M;
RT "Identification of precursor transcripts for 6 novel miRNAs expands the
RT diversity on the genomic organisation and expression of miRNA genes in
RT rice";
RL BMC Plant Biol. 8:123(2008).
XX
CC This sequence is a predicted paralogue of the previously identified
CC miR159/JAW family [1]. It is predicted to target mRNAs coding for MYB and
CC TCP transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 201..221
FT /accession="MIMAT0009200"
FT /product="osa-miR159a.2"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 242..262
FT /accession="MIMAT0001022"
FT /product="osa-miR159a.1"
FT /evidence=not_experimental
FT /similarity="MI0000218"
XX
SQ Sequence 272 BP; 61 A; 55 C; 73 G; 0 T; 83 other;
guuguggacg uugagcuccu uucgguccaa aaaggggugu ugcugugggu cgauugagcu 60
gcugggucau ggaucccguu agccuacucc auguucauca uucagcucga gaucugaaag 120
aaacuacucc aauuuauacu aauaguaugu guguagauag gaaaaugaug gaguacucgu 180
uguugggaua ggcuuauggc uugcaugccc caggagcugc aucaacccua cauggacccu 240
cuuuggauug aagggagcuc ugcaucuuuu gu 272
//
ID osa-MIR159b standard; RNA; OSA; 188 BP.
XX
AC MI0001093;
XX
DE Oryza sativa miR159b stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified
CC miR159/JAW family [1]. It is predicted to target mRNAs coding for MYB and
CC TCP transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 158..178
FT /accession="MIMAT0001023"
FT /product="osa-miR159b"
FT /evidence=not_experimental
FT /similarity="MI0000189"
XX
SQ Sequence 188 BP; 45 A; 38 C; 47 G; 0 T; 58 other;
gguuaugaag uggagcuccu uucguuccaa ugaaagguuu aucugaaggg ugauacagcu 60
gcuuguucau gguucccacu auucuaucuc auaggaaaag agauaggcuu gugguuugca 120
ugaccaagga gccgaaucaa cuccuugcug accacucuuu ggauugaagg gagcucugca 180
ucuugauc 188
//
ID osa-MIR159c standard; RNA; OSA; 197 BP.
XX
AC MI0001094;
XX
DE Oryza sativa miR159c stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified
CC miR159/JAW family [1]. It is predicted to target mRNAs coding for MYB and
CC TCP transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 167..187
FT /accession="MIMAT0001024"
FT /product="osa-miR159c"
FT /evidence=not_experimental
FT /similarity="MI0000544"
XX
SQ Sequence 197 BP; 45 A; 45 C; 58 G; 0 T; 49 other;
gaggaggaag aggagcuccu uucgauccaa uucaggagag gaagugguag gaugcagcug 60
ccgauucaug gauaccucug gagugcaugg cagcaaugcu guaggccugc acuugcaugg 120
guuugcauga cccgggagau gaacccacca uugucuuccu cuauugauug gauugaaggg 180
agcuccacau cucucuc 197
//
ID osa-MIR159d standard; RNA; OSA; 189 BP.
XX
AC MI0001095;
XX
DE Oryza sativa miR159d stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified
CC miR159/JAW family [1]. It is predicted to target mRNAs coding for MYB and
CC TCP transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 159..179
FT /accession="MIMAT0001025"
FT /product="osa-miR159d"
FT /evidence=not_experimental
FT /similarity="MI0000189"
XX
SQ Sequence 189 BP; 38 A; 41 C; 59 G; 0 T; 51 other;
ugaugugagg aggagcuccu uucgauccaa uucaggagag gaaguggugg gaugcagcug 60
ccgguucaug gauaccucug caguucaugc cgguaggccu gcacuugcau ggguuugcau 120
gaccugggag augaaccugc cauuguguuc cucuauugau uggauugaag ggagcuccgg 180
cuacaccua 189
//
ID osa-MIR159e standard; RNA; OSA; 191 BP.
XX
AC MI0001096;
XX
DE Oryza sativa miR159e stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified
CC miR159/JAW family [1]. It is predicted to target mRNAs coding for MYB and
CC TCP transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 161..181
FT /accession="MIMAT0001026"
FT /product="osa-miR159e"
FT /evidence=not_experimental
FT /similarity="MI0000544"
XX
SQ Sequence 191 BP; 46 A; 42 C; 53 G; 0 T; 50 other;
gaugaagaag aagagcuccc uuucgaucca auucaggaga ggaaguggua ggaugcagcu 60
gccgguucau ggauaccucu ggagugcagg gcaaauaguc cuacccuuuc auggguuugc 120
augacucggg agaugaaccc gccauugucu uccucuauug auuggauuga agggagcucc 180
ucuagcuaca u 191
//
ID osa-MIR159f standard; RNA; OSA; 188 BP.
XX
AC MI0001097;
XX
DE Oryza sativa miR159f stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified
CC miR159/JAW family [1]. It is predicted to target mRNAs coding for MYB and
CC TCP transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 158..178
FT /accession="MIMAT0001027"
FT /product="osa-miR159f"
FT /evidence=not_experimental
FT /similarity="MI0000544"
XX
SQ Sequence 188 BP; 42 A; 47 C; 52 G; 0 T; 47 other;
gaagaagaag acgagcuccc uucgauccaa uccaggagag gaagugguag gaugcagcug 60
ccgguucaug gauaccucug cagugcaugu cguaggcuug cacuugcaug gguuugcaug 120
acccgggaga ugaacccacc auugucuucc ucuuaugcuu ggauugaagg gagcucuaca 180
ccucucuc 188
//
ID osa-MIR319a standard; RNA; OSA; 191 BP.
XX
AC MI0001098;
XX
DE Oryza sativa miR319a stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21525786.
RA Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D;
RT "Genome-wide discovery and analysis of microRNAs and other small RNAs from
RT rice embryogenic callus";
RL RNA Biol. 8:538-547(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..76
FT /accession="MIMAT0020914"
FT /product="osa-miR319a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 117..137
FT /accession="MIMAT0020915"
FT /product="osa-miR319a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 162..181
FT /accession="MIMAT0001028"
FT /product="osa-miR319a-3p.2-3p"
FT /evidence=not_experimental
FT /similarity="MI0000545"
XX
SQ Sequence 191 BP; 42 A; 42 C; 53 G; 0 T; 54 other;
uguguaagaa gagagcucuc uucaguccac ucucagaugg cuguaggguu uuauuagcug 60
ccgaaucauc cauucaccua ccaagaaagu ugcaggagug uaucucuugg uagcggacug 120
gaugacgcgg gagcuaaaau uuagcucugc gccguuugug guuggacuga agggugcucc 180
cuugcucaag c 191
//
ID osa-MIR319b standard; RNA; OSA; 197 BP.
XX
AC MI0001099;
XX
DE Oryza sativa miR319b stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
FH Key Location/Qualifiers
FH
FT miRNA 168..187
FT /accession="MIMAT0001029"
FT /product="osa-miR319b"
FT /evidence=not_experimental
FT /similarity="MI0000544"
XX
SQ Sequence 197 BP; 46 A; 50 C; 58 G; 0 T; 43 other;
gauggaugga agagagcguc cuucagucca cucaugggcg gugcuagggu cgaauuagcu 60
gccgacucau ucacccacau gccaagcaag aaacgcuuga gauagcgaag cuuagcagau 120
gagugaauga agcgggaggu aacguuccga ucucgcgccg ucuuugcuug gacugaaggg 180
ugcucccucc uccucga 197
//
ID osa-MIR160e standard; RNA; OSA; 114 BP.
XX
AC MI0001100;
XX
DE Oryza sativa miR160e stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence is a predicted paralogue of the previously identified miR160
CC family [1]. It is predicted to target mRNAs coding for Auxin Response
CC Factors (ARF transcription factors).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001030"
FT /product="osa-miR160e-5p"
FT /evidence=not_experimental
FT /similarity="MI0000190"
FT miRNA 86..106
FT /accession="MIMAT0022867"
FT /product="osa-miR160e-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 114 BP; 17 A; 35 C; 35 G; 0 T; 27 other;
guaggggaua ugccuggcuc ccuguaugcc gcucgcaugg cugccaaccc aaugaacucg 60
aucucguugu uggccgcugc guacggcgug cgaggugcca agcauggccc ucuu 114
//
ID osa-MIR160f standard; RNA; OSA; 100 BP.
XX
AC MI0001101;
XX
DE Oryza sativa miR160f stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence is a predicted paralogue of the previously identified miR160
CC family [1]. It is predicted to target mRNAs coding for Auxin Response
CC Factors (ARF transcription factors).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001031"
FT /product="osa-miR160f-5p"
FT /evidence=not_experimental
FT /similarity="MI0000190"
FT miRNA 72..92
FT /accession="MIMAT0022868"
FT /product="osa-miR160f-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 100 BP; 14 A; 27 C; 34 G; 0 T; 25 other;
ggauuaacgc ugccuggcuc ccugaaugcc auccgagaag cgugccgcug uggccggcug 60
cuuccugguu ggcauugagg gagucaugca ggguuugcuc 100
//
ID osa-MIR162b standard; RNA; OSA; 134 BP.
XX
AC MI0001102;
XX
DE Oryza sativa miR162b stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR162
CC family [1]. It is predicted to target mRNAs coding for DICER-LIKE 1 (DL1)
CC proteins.
XX
FH Key Location/Qualifiers
FH
FT miRNA 104..124
FT /accession="MIMAT0001032"
FT /product="osa-miR162b"
FT /evidence=not_experimental
FT /similarity="MI0000195"
XX
SQ Sequence 134 BP; 25 A; 36 C; 32 G; 0 T; 41 other;
ugggugaugc cugggcgcag ugguuuaucg aucucuuccc ugccuugugc ugcuccgauc 60
gaugcccgug cugauucuug auaauauaca acgcaggaau cgaucgauaa gccucugcau 120
ccagaucuca cuuu 134
//
ID osa-MIR164c standard; RNA; OSA; 119 BP.
XX
AC MI0001103;
XX
DE Oryza sativa miR164c stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR164
CC family [1]. It is predicted to target mRNAs coding for NAC domain
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001033"
FT /product="osa-miR164c"
FT /evidence=not_experimental
FT /similarity="MI0000197"
XX
SQ Sequence 119 BP; 28 A; 31 C; 31 G; 0 T; 29 other;
agguucuugu uggagaagca ggguacgugc aaaaugcaca ccgguugguc gagcuaauua 60
acaagcucug acgaccaugg ugaucgaaug cacgugcucc ccuucuccac cauggccuu 119
//
ID osa-MIR164d standard; RNA; OSA; 94 BP.
XX
AC MI0001104;
XX
DE Oryza sativa miR164d stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR164
CC family [1]. It is predicted to target mRNAs coding for NAC domain
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001034"
FT /product="osa-miR164d"
FT /evidence=not_experimental
FT /similarity="MI0000197"
XX
SQ Sequence 94 BP; 13 A; 30 C; 34 G; 0 T; 17 other;
caaaccgugc uggagaagca gggcacgugc ucgacggcgg ggcuggcugg ccggccggcu 60
ugcagcaugu gcgcuccuuc uccagcaugg cuuc 94
//
ID osa-MIR164e standard; RNA; OSA; 132 BP.
XX
AC MI0001105;
XX
DE Oryza sativa miR164e stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR164
CC family [1]. It is predicted to target mRNAs coding for NAC domain
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001035"
FT /product="osa-miR164e"
FT /evidence=not_experimental
FT /similarity="MI0000197"
XX
SQ Sequence 132 BP; 20 A; 34 C; 47 G; 0 T; 31 other;
uugugcaggg uggagaagca gggcacguga gcggccaucc aguguagcuu cgcugcgcgu 60
ccauggcggc gaacgcgcgu gaucuggagu uuggaugguc guucaugugu ccgucuucuc 120
caccgagcac ug 132
//
ID osa-MIR166k standard; RNA; OSA; 127 BP.
XX
AC MI0001107;
XX
DE Oryza sativa miR166k stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence is a predicted paralogue of the previously identified miR166
CC family [1]. It is predicted to target mRNAs coding for HD-Zip
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0022870"
FT /product="osa-miR166k-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 97..117
FT /accession="MIMAT0001037"
FT /product="osa-miR166k-3p"
FT /evidence=not_experimental
FT /similarity="MI0000201"
XX
SQ Sequence 127 BP; 20 A; 36 C; 35 G; 0 T; 36 other;
auuagguuaa gggguuuguu gucuggcucg aggcauccgg gacuccgguu ucuccuuucc 60
uacuggaggc gccuaauuuc cggcgagcuc ggagccucgg accaggcuuc aaucccuuua 120
accaugc 127
//
ID osa-MIR166l standard; RNA; OSA; 117 BP.
XX
AC MI0001108;
XX
DE Oryza sativa miR166l stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence is a predicted paralogue of the previously identified miR166
CC family [1]. It is predicted to target mRNAs coding for HD-Zip
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0022871"
FT /product="osa-miR166l-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 87..107
FT /accession="MIMAT0001038"
FT /product="osa-miR166l-3p"
FT /evidence=not_experimental
FT /similarity="MI0000204"
XX
SQ Sequence 117 BP; 27 A; 24 C; 31 G; 0 T; 35 other;
guuagguuaa ggggauuguu gucugguuca aggucuccac auugugcaaa auguucauuc 60
auggaggcac aggaugcuug gugaucucgg accaggcuuc aaucccuuua accagca 117
//
ID osa-MIR167d standard; RNA; OSA; 110 BP.
XX
AC MI0001109;
XX
DE Oryza sativa miR167d stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence is a predicted paralogue of the previously identified miR167
CC family [1]. It is predicted to target mRNAs coding for Auxin Response
CC Factors (ARF transcription factors).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001039"
FT /product="osa-miR167d-5p"
FT /evidence=not_experimental
FT /similarity="MI0000209"
FT miRNA 81..102
FT /accession="MIMAT0022872"
FT /product="osa-miR167d-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 110 BP; 30 A; 20 C; 30 G; 0 T; 30 other;
cauuaggagc ugaagcugcc agcaugaucu gaugagugcu uauuagguga gggcagaauu 60
gacugccaaa acaaagauca gaucaugcug ugcaguuuca ucugcuugug 110
//
ID osa-MIR167e standard; RNA; OSA; 273 BP.
XX
AC MI0001110;
XX
DE Oryza sativa miR167e stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence is a predicted paralogue of the previously identified miR167
CC family [1]. It is predicted to target mRNAs coding for Auxin Response
CC Factors (ARF transcription factors).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001040"
FT /product="osa-miR167e-5p"
FT /evidence=not_experimental
FT /similarity="MI0000208"
FT miRNA 245..265
FT /accession="MIMAT0022873"
FT /product="osa-miR167e-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 273 BP; 60 A; 42 C; 83 G; 0 T; 88 other;
ugugagagaa ugaagcugcc agcaugaucu gguugucagg caugagccaa aucuauccau 60
gguguuggug guacugaaau uaccgcguuu ucgagguuuu ucgucguguc aacuugcgaa 120
gggaauuacg gguucuugau gagcauuggu gauaggaggu gugggcuugg uuaguagagg 180
uagaauuaug auuguucuug ugaguuucag uaagaggugg gagugauugg aauuuggcuc 240
caucagauca uguugcagcu ucacucucuc acc 273
//
ID osa-MIR167f standard; RNA; OSA; 113 BP.
XX
AC MI0001111;
XX
DE Oryza sativa miR167f stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR167
CC family [1]. It is predicted to target mRNAs coding for Auxin Response
CC Factors (ARF transcription factors).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001041"
FT /product="osa-miR167f"
FT /evidence=not_experimental
FT /similarity="MI0000208"
XX
SQ Sequence 113 BP; 33 A; 25 C; 23 G; 0 T; 32 other;
cacaagugga ugaagcugcc agcaugaucu gaucacagua guucucuagc ugaugaugau 60
uuacaaaacc uagagacaug caucagauca ucuggcaguu ucaucuucuc aug 113
//
ID osa-MIR167g standard; RNA; OSA; 82 BP.
XX
AC MI0001112;
XX
DE Oryza sativa miR167g stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR167
CC family [1]. It is predicted to target mRNAs coding for Auxin Response
CC Factors (ARF transcription factors).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001042"
FT /product="osa-miR167g"
FT /evidence=not_experimental
FT /similarity="MI0000208"
XX
SQ Sequence 82 BP; 24 A; 23 C; 17 G; 0 T; 18 other;
cauaagcagg ugaagcugcc agcaugaucu gaaagcaucu caaaccagcg aucagaucau 60
ccggcagcuu caucuucuca ug 82
//
ID osa-MIR167h standard; RNA; OSA; 120 BP.
XX
AC MI0001113;
XX
DE Oryza sativa miR167h stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence is a predicted paralogue of the previously identified miR167
CC family [1]. It is predicted to target mRNAs coding for Auxin Response
CC Factors (ARF transcription factors).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001043"
FT /product="osa-miR167h-5p"
FT /evidence=not_experimental
FT /similarity="MI0000208"
FT miRNA 92..112
FT /accession="MIMAT0022874"
FT /product="osa-miR167h-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 120 BP; 27 A; 25 C; 27 G; 0 T; 41 other;
cacaaguugg ugaagcugcc agcaugaucu gaugaugaug augauccacc ucucucaucu 60
guguucuuga uuaauuacgg aucaaucgau caggucaugc uguaguuuca ucugcugguu 120
//
ID osa-MIR167i standard; RNA; OSA; 201 BP.
XX
AC MI0001114;
XX
DE Oryza sativa miR167i stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence is a predicted paralogue of the previously identified miR167
CC family [1]. It is predicted to target mRNAs coding for Auxin Response
CC Factors (ARF transcription factors).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001044"
FT /product="osa-miR167i-5p"
FT /evidence=not_experimental
FT /similarity="MI0000208"
FT miRNA 173..193
FT /accession="MIMAT0022875"
FT /product="osa-miR167i-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 201 BP; 43 A; 43 C; 47 G; 0 T; 68 other;
ugugagaggc ugaagcugcc agcaugaucu gguccaugag uugcacugcu gaauauauug 60
aauucagcca ggagcugcua cugcaguucu gaucucgauc ugcauucguu guucugagcu 120
auguauggau uugaucgguu ugaaggcauc caugucuuua auuucaucga ucagaucaug 180
uugcagcuuc acucucucac u 201
//
ID osa-MIR168a standard; RNA; OSA; 87 BP.
XX
AC MI0001115;
XX
DE Oryza sativa miR168a stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 19903869.
RA Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
RT "Rice MicroRNA effector complexes and targets";
RL Plant Cell. 21:3421-3435(2009).
XX
CC This sequence is a predicted paralogue of the previously identified miR168
CC family [1]. It is predicted to target mRNAs coding for the ARGONAUTE
CC protein.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001045"
FT /product="osa-miR168a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000210"
FT miRNA 56..79
FT /accession="MIMAT0015122"
FT /product="osa-miR168a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 87 BP; 10 A; 34 C; 31 G; 0 T; 12 other;
cgccucgggc ucgcuuggug cagaucggga cccgccgccg ccgcugccgg ggccggaucc 60
cgccuugcac caagugaauc ggagccg 87
//
ID osa-MIR168b standard; RNA; OSA; 106 BP.
XX
AC MI0001116;
XX
DE Oryza sativa miR168b stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR168
CC family [1]. It is predicted to target mRNAs coding for the ARGONAUTE
CC protein.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001046"
FT /product="osa-miR168b"
FT /evidence=not_experimental
FT /similarity="MI0000210"
XX
SQ Sequence 106 BP; 14 A; 29 C; 30 G; 0 T; 33 other;
uggucuugug aggcuuggug cagcucggga acuguucuug auggacuggc aggaacucca 60
uguccaccac ugccacuccu guguuguggc auuccuccuu gccguu 106
//
ID osa-MIR169b standard; RNA; OSA; 128 BP.
XX
AC MI0001117;
XX
DE Oryza sativa miR169b stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1]. It is predicted to target mRNAs coding for the CCAAT Binding
CC Factor (CBF) and HAP2-like transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001047"
FT /product="osa-miR169b"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 128 BP; 27 A; 30 C; 31 G; 0 T; 40 other;
gaacggaaug cagccaagga ugacuugccg guacguguau gcauguuuca agguacuaua 60
ugugccccca acuguuuuag auccaugcug acauuuuccg gcaaguuguc cuuggcuacg 120
ucuuguuc 128
//
ID osa-MIR169c standard; RNA; OSA; 112 BP.
XX
AC MI0001118;
XX
DE Oryza sativa miR169c stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1]. It is predicted to target mRNAs coding for the CCAAT Binding
CC Factor (CBF) and HAP2-like transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001048"
FT /product="osa-miR169c"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 112 BP; 21 A; 29 C; 35 G; 0 T; 27 other;
gaacgggaug cagccaagga ugacuugccg gcuccuggua uugggggaau cucagcuuug 60
cugaagcgcc uuggaguuag ccggcaaguc uguccuuggc uacaccuagc uc 112
//
ID osa-MIR169d standard; RNA; OSA; 103 BP.
XX
AC MI0001119;
XX
DE Oryza sativa miR169d stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1]. It is predicted to target mRNAs coding for the CCAAT Binding
CC Factor (CBF) and HAP2-like transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001049"
FT /product="osa-miR169d"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 103 BP; 21 A; 21 C; 29 G; 0 T; 32 other;
auuuaucgug uagccaagga ugaauugccg gcguuucacg cuguugaugg ugcgugcaua 60
uauaaguugg cgccggcaag ucauuucagg cuacauguuu gcc 103
//
ID osa-MIR169e standard; RNA; OSA; 132 BP.
XX
AC MI0001120;
XX
DE Oryza sativa miR169e stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1]. It is predicted to target mRNAs coding for the CCAAT Binding
CC Factor (CBF) and HAP2-like transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001050"
FT /product="osa-miR169e"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 132 BP; 26 A; 29 C; 35 G; 0 T; 42 other;
gcugguugug uagccaagga ugacuugccg gccugguuug uguucaucag caauccagca 60
uaugcuguau ugccgugugu gaucgaucga ugcauggacc ggcaaguuau uuucuuuggc 120
uacauuacaa cc 132
//
ID osa-MIR169f standard; RNA; OSA; 214 BP.
XX
AC MI0001121;
XX
DE Oryza sativa miR169f stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21679406.
RA Wei LQ, Yan LF, Wang T;
RT "Deep sequencing on genome-wide scale reveals the unique composition and
RT expression patterns of microRNAs in developing pollen of Oryza sativa";
RL Genome Biol. 12:R53(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0020916"
FT /product="osa-miR169f.2"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 32..52
FT /accession="MIMAT0001051"
FT /product="osa-miR169f.1"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 214 BP; 42 A; 48 C; 52 G; 0 T; 72 other;
gggccuucca ugaggacaag agcugauucg guagccaagg augacuugcc uaaugccuau 60
gugcaugugu uuauacgcug cucaucugca uuuugauuau ccccugauca guccugucgu 120
caauuauaug uguguguagu acucuguacu cauacauaua uaggcauguc uuccuuggcu 180
auucggagcg gcucuugucu cucguggaag gcug 214
//
ID osa-MIR169g standard; RNA; OSA; 126 BP.
XX
AC MI0001122;
XX
DE Oryza sativa miR169g stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1]. It is predicted to target mRNAs coding for the CCAAT Binding
CC Factor (CBF) and HAP2-like transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001052"
FT /product="osa-miR169g"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 126 BP; 22 A; 30 C; 39 G; 0 T; 35 other;
cugccucugg uagccaagga ugacuugccu auugugcucu ucugaaugau gcagugccau 60
gaucagugug gccuggcugg uucagaugag ccgagauagg cagucuccuu ggcuagccug 120
aguggc 126
//
ID osa-MIR169h standard; RNA; OSA; 122 BP.
XX
AC MI0001123;
XX
DE Oryza sativa miR169h stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1]. It is predicted to target mRNAs coding for the CCAAT Binding
CC Factor (CBF) and HAP2-like transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001053"
FT /product="osa-miR169h"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 122 BP; 27 A; 23 C; 30 G; 0 T; 42 other;
uuagcucugg uagccaagga ugacuugccu guguccuugu guguaaggau cauuaauuau 60
uauucagaaa augauccuuu cagcagguuu caugggcagu cuccuuggcu agccugagug 120
au 122
//
ID osa-MIR169i standard; RNA; OSA; 176 BP.
XX
AC MI0001124;
XX
DE Oryza sativa miR169i stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21679406.
RA Wei LQ, Yan LF, Wang T;
RT "Deep sequencing on genome-wide scale reveals the unique composition and
RT expression patterns of microRNAs in developing pollen of Oryza sativa";
RL Genome Biol. 12:R53(2011).
XX
RN [3]
RX PUBMED; 22585409.
RA Liu Q;
RT "Novel miRNAs in the control of arsenite levels in rice";
RL Funct Integr Genomics. 12:649-658(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0020917"
FT /product="osa-miR169i-5p.2"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 44..64
FT /accession="MIMAT0001054"
FT /product="osa-miR169i-5p.1"
FT /evidence=not_experimental
FT /similarity="MI0000212"
FT miRNA 135..156
FT /accession="MIMAT0022876"
FT /product="osa-miR169i-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 176 BP; 39 A; 34 C; 51 G; 0 T; 52 other;
ggaagagagc aaggcuugca uggugauaag gguguagcuc ugguagccaa ggaugacuug 60
ccuguguccu uguguagagg aucauucaga aaaugagccu ugaacugguu cauaggcagu 120
cuccuuggcu agucugaguc gcucuuauca cucauguuag gcuugcaucu cguuga 176
//
ID osa-MIR169j standard; RNA; OSA; 125 BP.
XX
AC MI0001125;
XX
DE Oryza sativa miR169j stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1]. It is predicted to target mRNAs coding for the CCAAT Binding
CC Factor (CBF) and HAP2-like transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001055"
FT /product="osa-miR169j"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 125 BP; 24 A; 31 C; 33 G; 0 T; 37 other;
ucgcaucugg uagccaagga ugacuugccu gugucucugc ucaugugcag uagaagaaga 60
ugcauuucua gcugcuuucu gcauauguga ucucacaggc agucuccuug gcuagccuga 120
gcggc 125
//
ID osa-MIR169k standard; RNA; OSA; 156 BP.
XX
AC MI0001126;
XX
DE Oryza sativa miR169k stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1]. It is predicted to target mRNAs coding for the CCAAT Binding
CC Factor (CBF) and HAP2-like transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001056"
FT /product="osa-miR169k"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 156 BP; 28 A; 33 C; 47 G; 0 T; 48 other;
ucugucuaga uagccaagga ugacuugccu guggccucuu ggagagagag guguagcuua 60
auuagcagca ugguuugagc auugcuugau cgguugaucg cuucgcuugc ucugcaugag 120
aucuuacagg cagucuccuu ggcuagucug ggcggc 156
//
ID osa-MIR169l standard; RNA; OSA; 108 BP.
XX
AC MI0001127;
XX
DE Oryza sativa miR169l stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1]. It is predicted to target mRNAs coding for the CCAAT Binding
CC Factor (CBF) and HAP2-like transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001057"
FT /product="osa-miR169l"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 108 BP; 22 A; 24 C; 27 G; 0 T; 35 other;
uuaucucuga uagccaagga ugacuugccu guguccuccc ugaaggauua gcaauuuaau 60
gauccuuuaa gcugguucau gggcagucuc cuuggcuagc cugagugg 108
//
ID osa-MIR169m standard; RNA; OSA; 138 BP.
XX
AC MI0001128;
XX
DE Oryza sativa miR169m stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1]. It is predicted to target mRNAs coding for the CCAAT Binding
CC Factor (CBF) and HAP2-like transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001058"
FT /product="osa-miR169m"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 138 BP; 32 A; 27 C; 35 G; 0 T; 44 other;
ugaguccugg uagccaagga ugacuugccu guauauuuau auauauaugu gugugugauc 60
aauggaugga uugaucaagc ugcuugcagg cucaugcaua uauauguaca ggcagucucc 120
uuggcuagcc cggcuacc 138
//
ID osa-MIR169n standard; RNA; OSA; 177 BP.
XX
AC MI0001129;
XX
DE Oryza sativa miR169n stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1]. It is predicted to target mRNAs coding for the CCAAT Binding
CC Factor (CBF) and HAP2-like transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001059"
FT /product="osa-miR169n"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 177 BP; 35 A; 37 C; 49 G; 0 T; 56 other;
cucccuuugg uagccaagaa ugacuugccu auguguuuug ccuuguguug gcucauccau 60
ccaucuauca gccguugcag auuugcagug gcagauuaaa ggguuucaga aagaaauucu 120
ugugauggau gugcaaugug gcugcauggg ccggucuucu uggcuagcca gaguggc 177
//
ID osa-MIR169o standard; RNA; OSA; 173 BP.
XX
AC MI0001130;
XX
DE Oryza sativa miR169o stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1]. It is predicted to target mRNAs coding for the CCAAT Binding
CC Factor (CBF) and HAP2-like transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001060"
FT /product="osa-miR169o"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 173 BP; 34 A; 41 C; 46 G; 0 T; 52 other;
cucccuuugg uagccaagaa ugacuugccu acgcuuuugc ccucuguugg cucauccauc 60
cgucuaucua ucugccaugg cagauggcag auuaaggguu ucugaaagaa auucuuguga 120
uaggaugugc aaugaggcug caugggccgg ucuucuuggc uagccagagu ggc 173
//
ID osa-MIR169p standard; RNA; OSA; 126 BP.
XX
AC MI0001131;
XX
DE Oryza sativa miR169p stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1]. It is predicted to target mRNAs coding for the CCAAT Binding
CC Factor (CBF) and HAP2-like transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001061"
FT /product="osa-miR169p"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 126 BP; 30 A; 40 C; 33 G; 0 T; 23 other;
gagcaaggug uagccaagga caaacuugcc ggaucaacag agaaggacug ccagucuccg 60
gccaauuaau uaaccucgcc gucggccauc gccggccggc aagucauccu uggcugcauc 120
cugcuc 126
//
ID osa-MIR169q standard; RNA; OSA; 108 BP.
XX
AC MI0001132;
XX
DE Oryza sativa miR169q stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR169
CC family [1]. It is predicted to target mRNAs coding for the CCAAT Binding
CC Factor (CBF) and HAP2-like transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001062"
FT /product="osa-miR169q"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 108 BP; 35 A; 27 C; 24 G; 0 T; 22 other;
ccacucaggc uagccaagga gacugcccau gaaccagcuu aaaggaucau uaaauugcua 60
auccuucagg gaggacacag gcaagucauc cuuggcuauc agagauaa 108
//
ID osa-MIR171b standard; RNA; OSA; 100 BP.
XX
AC MI0001133;
XX
DE Oryza sativa miR171b stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR171
CC family [1]. It is predicted to target mRNAs coding for SCARECROW-like
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 70..90
FT /accession="MIMAT0001063"
FT /product="osa-miR171b"
FT /evidence=not_experimental
FT /similarity="MI0000214"
XX
SQ Sequence 100 BP; 22 A; 24 C; 30 G; 0 T; 24 other;
gcgacgacgg gauauugggg cgguucaauc agaaagcuug ugcuccggaa gcgaggagcu 60
cuacucuuuu gauugagccg ugccaauauc acgucgcauc 100
//
ID osa-MIR171c standard; RNA; OSA; 99 BP.
XX
AC MI0001134;
XX
DE Oryza sativa miR171c stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence is a predicted paralogue of the previously identified miR171
CC family [1]. It is predicted to target mRNAs coding for SCARECROW-like
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0022877"
FT /product="osa-miR171c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 69..89
FT /accession="MIMAT0001064"
FT /product="osa-miR171c-3p"
FT /evidence=not_experimental
FT /similarity="MI0000214"
XX
SQ Sequence 99 BP; 20 A; 23 C; 31 G; 0 T; 25 other;
gugggaacgg gauauuggug cgguucaauc agaaagcuug ugcuccgaag gcgaggggcu 60
ccacucuuug auugagccgu gccaauauca cgucgccuu 99
//
ID osa-MIR171d standard; RNA; OSA; 135 BP.
XX
AC MI0001135;
XX
DE Oryza sativa miR171d stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence is a predicted paralogue of the previously identified miR171
CC family [1]. It is predicted to target mRNAs coding for SCARECROW-like
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0022878"
FT /product="osa-miR171d-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 105..125
FT /accession="MIMAT0001065"
FT /product="osa-miR171d-3p"
FT /evidence=not_experimental
FT /similarity="MI0000214"
XX
SQ Sequence 135 BP; 31 A; 31 C; 35 G; 0 T; 38 other;
uuguagcuau gauguuggcc cggcucacuc agauggauca ucggugcaga agagugcaug 60
aaucugaugc agucucagug uaguaugcuc caugcuggaa cuucugauug agccgugcca 120
auaucucagc accau 135
//
ID osa-MIR171e standard; RNA; OSA; 119 BP.
XX
AC MI0001136;
XX
DE Oryza sativa miR171e stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence is a predicted paralogue of the previously identified miR171
CC family [1]. It is predicted to target mRNAs coding for SCARECROW-like
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0022879"
FT /product="osa-miR171e-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 89..109
FT /accession="MIMAT0001066"
FT /product="osa-miR171e-3p"
FT /evidence=not_experimental
FT /similarity="MI0000214"
XX
SQ Sequence 119 BP; 21 A; 27 C; 33 G; 0 T; 38 other;
ugguagcuau gauguuggcu cggcucacuc agacggcauu ggcgugaugc aaagcaugca 60
ugcgugcuug cuagcucacu uguguuucug auugagccgu gccaauaucu uagugcucu 119
//
ID osa-MIR171f standard; RNA; OSA; 127 BP.
XX
AC MI0001137;
XX
DE Oryza sativa miR171f stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence is a predicted paralogue of the previously identified miR171
CC family [1]. It is predicted to target mRNAs coding for SCARECROW-like
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0022880"
FT /product="osa-miR171f-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 97..117
FT /accession="MIMAT0001067"
FT /product="osa-miR171f-3p"
FT /evidence=not_experimental
FT /similarity="MI0000214"
XX
SQ Sequence 127 BP; 33 A; 23 C; 37 G; 0 T; 34 other;
gggagagugc gauguuggca ugguucaauc aaaccgggca aacuuaugca cuagcuaagc 60
aagaugcagg gauaugcagu augguuuugu uuggucugau ugagccgugc caauaucaca 120
agcuugc 127
//
ID osa-MIR171g standard; RNA; OSA; 89 BP.
XX
AC MI0001138;
XX
DE Oryza sativa miR171g stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR171
CC family [1]. It is predicted to target mRNAs coding for SCARECROW-like
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 59..79
FT /accession="MIMAT0001068"
FT /product="osa-miR171g"
FT /evidence=not_experimental
FT /similarity="MI0000214"
XX
SQ Sequence 89 BP; 23 A; 23 C; 23 G; 0 T; 20 other;
gacauggcau gguauugacu uggcucaucu cagcaacagc aaacugcaug cagcgcugga 60
ggugagccga gccaauauca cuucauguc 89
//
ID osa-MIR172a standard; RNA; OSA; 109 BP.
XX
AC MI0001139;
XX
DE Oryza sativa miR172a stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR172
CC family [1]. It is predicted to target mRNAs coding for APETALA2-like
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 79..99
FT /accession="MIMAT0001069"
FT /product="osa-miR172a"
FT /evidence=not_experimental
FT /similarity="MI0000215"
XX
SQ Sequence 109 BP; 31 A; 26 C; 24 G; 0 T; 28 other;
guguuugcgg gcguggcauc aucaagauuc acauccaugc auauaucaca agacgcacau 60
auacauccga uuuggcugag aaucuugaug augcugcauc cgcagacaa 109
//
ID osa-MIR172b standard; RNA; OSA; 238 BP.
XX
AC MI0001140;
XX
DE Oryza sativa miR172b stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR172
CC family [1]. It is predicted to target mRNAs coding for APETALA2-like
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 208..228
FT /accession="MIMAT0001070"
FT /product="osa-miR172b"
FT /evidence=not_experimental
FT /similarity="MI0000215"
XX
SQ Sequence 238 BP; 65 A; 46 C; 54 G; 0 T; 73 other;
gugauuucug acguggcauc aucaagauuc acacauuaca uugcaugcau gcauaugucu 60
augcaucuuu gagcuuguug uucugaucuc aacaaccuag cuagcuaaua uuucucuccu 120
ggcccugacc ugcaugaugc augguugcac gcauggagag agaagagaga gaucgaagcu 180
aauuaaacgc auguguauau auguguggga aucuugauga ugcugcaucg gaaauuaa 238
//
ID osa-MIR172c standard; RNA; OSA; 111 BP.
XX
AC MI0001141;
XX
DE Oryza sativa miR172c stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
CC This sequence is a predicted paralogue of the previously identified miR172
CC family [1]. It is predicted to target mRNAs coding for APETALA2-like
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 81..101
FT /accession="MIMAT0001071"
FT /product="osa-miR172c"
FT /evidence=not_experimental
FT /similarity="MI0000215"
XX
SQ Sequence 111 BP; 24 A; 26 C; 32 G; 0 T; 29 other;
cuuguugcgg gugcagcguc aucaagauuc acgugugccg cacggcacac guaucgguuu 60
ucaaguguag ucaucgugcg ugaaucuuga ugaugcugca ccagcaaaga g 111
//
ID osa-MIR166g standard; RNA; OSA; 145 BP.
XX
AC MI0001142;
XX
DE Oryza sativa miR166g stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence is a predicted paralogue of the previously identified miR166
CC family [1]. It is predicted to target mRNAs coding for HD-Zip
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0022881"
FT /product="osa-miR166g-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 115..135
FT /accession="MIMAT0001072"
FT /product="osa-miR166g-3p"
FT /evidence=not_experimental
FT /similarity="MI0000201"
XX
SQ Sequence 145 BP; 30 A; 29 C; 37 G; 0 T; 49 other;
agcauggugu cuggaaugga ggcugaucca agaucauugc uuggugcaaa auacuagggc 60
auuguuguaa gugccauuag uucuuuuuug uuuccgaguu uguuaucgag gaucucggac 120
caggcuucau uccucacacc gugcu 145
//
ID osa-MIR166h standard; RNA; OSA; 119 BP.
XX
AC MI0001143;
XX
DE Oryza sativa miR166h stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence is a predicted paralogue of the previously identified miR166
CC family [1]. It is predicted to target mRNAs coding for HD-Zip
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0022882"
FT /product="osa-miR166h-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 89..109
FT /accession="MIMAT0001073"
FT /product="osa-miR166h-3p"
FT /evidence=not_experimental
FT /similarity="MI0000201"
XX
SQ Sequence 119 BP; 18 A; 32 C; 40 G; 0 T; 29 other;
gguggcuugu ggggaauguu ggcuggcucg agguauccac aucuuaauuc cucuccggcg 60
aucgagccgg cucgggcgug uggaagcguc ggaccaggcu ucauuccucg caagccgau 119
//
ID osa-MIR166i standard; RNA; OSA; 145 BP.
XX
AC MI0001144;
XX
DE Oryza sativa miR166i stem-loop
XX
RN [1]
RX PUBMED; 15200956.
RA Jones-Rhoades MW, Bartel DP;
RT "Computational identification of plant microRNAs and their targets,
RT including a stress-induced miRNA";
RL Mol Cell. 14:787-799(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
CC This sequence is a predicted paralogue of the previously identified miR166
CC family [1]. It is predicted to target mRNAs coding for HD-Zip
CC transcription factors.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0022883"
FT /product="osa-miR166i-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 115..135
FT /accession="MIMAT0001074"
FT /product="osa-miR166i-3p"
FT /evidence=not_experimental
FT /similarity="MI0000201"
XX
SQ Sequence 145 BP; 38 A; 23 C; 39 G; 0 T; 45 other;
agauaggugu uuggaaugca guuugaucca agaucugccu auauauaugg uguguauauc 60
auaucuugug auauggggga uaugcaacag gugugugaca gggguaggua gaucucggau 120
caggcuucau uccucacacc aauac 145
//
ID hsa-mir-384 standard; RNA; HSA; 88 BP.
XX
AC MI0001145;
XX
DE Homo sapiens miR-384 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-384; hsa-miR-384.
DR HGNC; 31878; MIR384.
DR ENTREZGENE; 494333; MIR384.
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..76
FT /accession="MIMAT0001075"
FT /product="hsa-miR-384"
FT /evidence=not_experimental
FT /similarity="MI0001146"
XX
SQ Sequence 88 BP; 33 A; 13 C; 11 G; 0 T; 31 other;
uguuaaauca ggaauuuuaa acaauuccua gacaauaugu auaauguuca uaagucauuc 60
cuagaaauug uucauaaugc cuguaaca 88
//
ID mmu-mir-384 standard; RNA; MMU; 88 BP.
XX
AC MI0001146;
XX
DE Mus musculus miR-384 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619394; Mir384.
DR ENTREZGENE; 723861; Mir384.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0004745"
FT /product="mmu-miR-384-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 57..78
FT /accession="MIMAT0001076"
FT /product="mmu-miR-384-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 88 BP; 30 A; 13 C; 16 G; 0 T; 29 other;
uguuaaauca ggaauuguaa acaauuccua ggcaaugugu auaauguugg uaagucauuc 60
cuagaaauug uucacaaugc cuguaaca 88
//
ID osa-MIR171h standard; RNA; OSA; 101 BP.
XX
AC MI0001147;
XX
DE Oryza sativa miR171h stem-loop
XX
RN [1]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..74
FT /accession="MIMAT0001077"
FT /product="osa-miR171h"
FT /evidence=not_experimental
FT /similarity="MI0000990"
XX
SQ Sequence 101 BP; 28 A; 20 C; 22 G; 0 T; 31 other;
agaagaagag gacaugguuu gguauuguuu cggcucaugu cguucacaca gaugugagcc 60
gaaccaauau cacucaugua uucuucauuc agagaacuuc u 101
//
ID osa-MIR393b standard; RNA; OSA; 132 BP.
XX
AC MI0001148;
XX
DE Oryza sativa miR393b stem-loop
XX
RN [1]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
RN [2]
RX PUBMED; 19903869.
RA Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
RT "Rice MicroRNA effector complexes and targets";
RL Plant Cell. 21:3421-3435(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..48
FT /accession="MIMAT0001078"
FT /product="osa-miR393b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001004"
FT miRNA 103..123
FT /accession="MIMAT0015123"
FT /product="osa-miR393b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 132 BP; 29 A; 34 C; 34 G; 0 T; 35 other;
ucggccugag gaaacuagug gaggacucca aagggaucgc auugaucugg cuagcuaucu 60
cgaucgaucg ccucaucgau cgacgacgac gugcgugauc gaucagugca aucccuuugg 120
aauuuuccuc uu 132
//
ID osa-MIR408 standard; RNA; OSA; 213 BP.
XX
AC MI0001149;
XX
DE Oryza sativa miR408 stem-loop
XX
RN [1]
RX PUBMED; 15258262.
RA Sunkar R, Zhu JK;
RT "Novel and stress-regulated microRNAs and other small RNAs from
RT Arabidopsis";
RL Plant Cell. 16:2001-2019(2004).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..51
FT /accession="MIMAT0022884"
FT /product="osa-miR408-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 153..173
FT /accession="MIMAT0001079"
FT /product="osa-miR408-3p"
FT /evidence=not_experimental
FT /similarity="MI0001080"
XX
SQ Sequence 213 BP; 40 A; 50 C; 62 G; 0 T; 61 other;
gggaguucug ugauuggaga ggagaggaga cagggaugag gcagagcaug ggauggggcu 60
aucaacagau guagauuauu ccuugcacaa gagaugauga ugagcuguga augaguucug 120
agagauggcu gguguuguug uugcucccuc cccugcacug ccucuucccu ggcuccccug 180
cacaccucuc ucucucucuc ucucucucug ugu 213
//
ID hsa-mir-196b standard; RNA; HSA; 84 BP.
XX
AC MI0001150;
XX
DE Homo sapiens miR-196b stem-loop
XX
RN [1]
RX PUBMED; 15105502.
RA Yekta S, Shih IH, Bartel DP;
RT "MicroRNA-directed cleavage of HOXB8 mRNA";
RL Science. 304:594-596(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [4]
RX PUBMED; 19144710.
RA Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G;
RT "Identification of novel Epstein-Barr virus microRNA genes from
RT nasopharyngeal carcinomas";
RL J Virol. 83:3333-3341(2009).
XX
DR TARGETS:PICTAR-VERT; hsa-miR-196b; hsa-miR-196b.
DR HGNC; 31790; MIR196B.
DR ENTREZGENE; 442920; MIR196B.
XX
CC miR-196b is predicted based on sequence homology to miR-196a [1]. Yekta
CC et al. report that miR-196 miRNAs are expressed from HOX gene clusters in
CC mammals, and that HOX genes in these clusters are targets of miR-196.
CC Indeed, HOXB8 mRNA was shown to be a natural target for miR-196-directed
CC cleavage through a perfectly complementary miR-target site. Other HOX
CC genes have imperfect miR-196 complementary sites indicative of regulation
CC by translational repression [1]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0001080"
FT /product="hsa-miR-196b-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000238"
FT miRNA 50..71
FT /accession="MIMAT0009201"
FT /product="hsa-miR-196b-3p"
FT /evidence=experimental
FT /experiment="454 [4]"
XX
SQ Sequence 84 BP; 14 A; 21 C; 19 G; 0 T; 30 other;
acuggucggu gauuuaggua guuuccuguu guugggaucc accuuucucu cgacagcacg 60
acacugccuu cauuacuuca guug 84
//
ID mmu-mir-196b standard; RNA; MMU; 85 BP.
XX
AC MI0001151;
XX
DE Mus musculus miR-196b stem-loop
XX
RN [1]
RX PUBMED; 15105502.
RA Yekta S, Shih IH, Bartel DP;
RT "MicroRNA-directed cleavage of HOXB8 mRNA";
RL Science. 304:594-596(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3618741; Mir196b.
DR ENTREZGENE; 723820; Mir196b.
XX
CC miR-196b is predicted based on sequence homology to miR-196a [1]. Yekta
CC et al. report that miR-196 miRNAs are expressed from HOX gene clusters in
CC mammals, and that HOX genes in these clusters are targets of miR-196.
CC Indeed, HOXB8 mRNA was shown to be a natural target for miR-196-directed
CC cleavage through a perfectly complementary miR-target site. Other HOX
CC genes have imperfect miR-196 complementary sites indicative of regulation
CC by translational repression [1]. Landgraf et al. confirm expression of
CC miR-196b in mouse by cloning [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001081"
FT /product="mmu-miR-196b-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3,5]"
FT /similarity="MI0000238"
FT miRNA 51..72
FT /accession="MIMAT0017170"
FT /product="mmu-miR-196b-3p"
FT /evidence=experimental
FT /experiment="454 [4], Illumina [5]"
XX
SQ Sequence 85 BP; 15 A; 21 C; 19 G; 0 T; 30 other;
aacuggucgg ugauuuaggu aguuuccugu uguugggauc caccuuucuc ucgacagcac 60
gacacugccu ucauuacuuc aguug 85
//
ID rno-mir-196b-1 standard; RNA; RNO; 85 BP.
XX
AC MI0001152;
XX
DE Rattus norvegicus miR-196b-1 stem-loop
XX
RN [1]
RX PUBMED; 15105502.
RA Yekta S, Shih IH, Bartel DP;
RT "MicroRNA-directed cleavage of HOXB8 mRNA";
RL Science. 304:594-596(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314164; Mir196b.
XX
CC miR-196b is predicted based on sequence homology to miR-196a [1]. Yekta
CC et al. report that miR-196 miRNAs are expressed from HOX gene clusters in
CC mammals, and that HOX genes in these clusters are targets of miR-196.
CC Indeed, HOXB8 mRNA was shown to be a natural target for miR-196-directed
CC cleavage through a perfectly complementary miR-target site. Other HOX
CC genes have imperfect miR-196 complementary sites indicative of regulation
CC by translational repression [1]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [2]. The ends of the miRNA may be offset with respect to previous
CC annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001082"
FT /product="rno-miR-196b-5p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT /similarity="MI0000238"
FT miRNA 51..73
FT /accession="MIMAT0017171"
FT /product="rno-miR-196b-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 85 BP; 15 A; 21 C; 19 G; 0 T; 30 other;
aacuggucgg ugauuuaggu aguuuccugu uguugggauc caccuuucuc ucgacagcac 60
gacacugccu ucauuacuuc aguug 85
//
ID osa-MIR172d standard; RNA; OSA; 130 BP.
XX
AC MI0001154;
XX
DE Oryza sativa miR172d stem-loop
XX
RN [1]
RX PUBMED; 15685364.
RA Li Y, Li W, Jin YX;
RT "Computational identification of novel family members of microRNA genes in
RT Arabidopsis thaliana and Oryza sativa";
RL Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..41
FT /accession="MIMAT0022885"
FT /product="osa-miR172d-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 91..111
FT /accession="MIMAT0001084"
FT /product="osa-miR172d-3p"
FT /evidence=not_experimental
FT /similarity="MI0000216"
XX
SQ Sequence 130 BP; 37 A; 30 C; 31 G; 0 T; 32 other;
aaacagucgg ugcuugcagg ugcagcacca ucaagauuca caucgaguuc aucccuaaac 60
gagaucgagg uuggcugacu auaugugaug agaaucuuga ugaugcugca ucagcaaacg 120
cucgacuacu 130
//
ID osa-MIR171i standard; RNA; OSA; 120 BP.
XX
AC MI0001155;
XX
DE Oryza sativa miR171i stem-loop
XX
RN [1]
RX PUBMED; 15685364.
RA Li Y, Li W, Jin YX;
RT "Computational identification of novel family members of microRNA genes in
RT Arabidopsis thaliana and Oryza sativa";
RL Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..28
FT /accession="MIMAT0022886"
FT /product="osa-miR171i-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 88..108
FT /accession="MIMAT0001085"
FT /product="osa-miR171i-3p"
FT /evidence=not_experimental
FT /similarity="MI0000214"
XX
SQ Sequence 120 BP; 27 A; 32 C; 29 G; 0 T; 32 other;
uaaaaagagg uauuggcgug ccucaauccg aaggcauggc ugauuacagg caccucgacc 60
gaucuagcgc augcagccau guuucuugga uugagccgcg ucaauaucuc uccuugcuuc 120
//
ID osa-MIR167j standard; RNA; OSA; 160 BP.
XX
AC MI0001156;
XX
DE Oryza sativa miR167j stem-loop
XX
RN [1]
RX PUBMED; 15685364.
RA Li Y, Li W, Jin YX;
RT "Computational identification of novel family members of microRNA genes in
RT Arabidopsis thaliana and Oryza sativa";
RL Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..46
FT /accession="MIMAT0001086"
FT /product="osa-miR167j"
FT /evidence=not_experimental
FT /similarity="MI0000208"
XX
SQ Sequence 160 BP; 37 A; 30 C; 35 G; 0 T; 58 other;
uugugaugug ugcaccuuaa gcagcugaag cugccagcau gaucugaucu uuugcgaucu 60
cuuuuuuuau cugaauaagu ugauggaaau auuggguucc uaagauucag aucgugcugc 120
gcaguuucau cugcuaaucg augcacuaca cugugaauuu 160
//
ID osa-MIR166m standard; RNA; OSA; 200 BP.
XX
AC MI0001157;
XX
DE Oryza sativa miR166m stem-loop
XX
RN [1]
RX PUBMED; 15685364.
RA Li Y, Li W, Jin YX;
RT "Computational identification of novel family members of microRNA genes in
RT Arabidopsis thaliana and Oryza sativa";
RL Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 147..167
FT /accession="MIMAT0001087"
FT /product="osa-miR166m"
FT /evidence=not_experimental
FT /similarity="MI0000200"
XX
SQ Sequence 200 BP; 30 A; 42 C; 51 G; 0 T; 77 other;
cucugcuuug gugguuggcu gauguucucg guuaaggggu uuguugucug guucaaggcc 60
uccugcuguc cuacaucaca uuuuuuuuuc uuuguucuga auuucugaug gaugugugug 120
ugcaugaugc auggcuggug gugaccucgg accaggcuuc auucccuuua accagcauuu 180
gcguuaauac caucaggcau 200
//
ID osa-MIR166j standard; RNA; OSA; 100 BP.
XX
AC MI0001158;
XX
DE Oryza sativa miR166j stem-loop
XX
RN [1]
RX PUBMED; 15685364.
RA Li Y, Li W, Jin YX;
RT "Computational identification of novel family members of microRNA genes in
RT Arabidopsis thaliana and Oryza sativa";
RL Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0022887"
FT /product="osa-miR166j-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 64..84
FT /accession="MIMAT0001088"
FT /product="osa-miR166j-3p"
FT /evidence=not_experimental
FT /similarity="MI0000203"
XX
SQ Sequence 100 BP; 19 A; 30 C; 29 G; 0 T; 22 other;
ugauccaugg cuguugagag gaaugacguc cggucugaag aucgccgucc ccaggcggug 60
gcuucggacc aggcuucauu ccccaugacu cauggaaccc 100
//
ID osa-MIR164f standard; RNA; OSA; 210 BP.
XX
AC MI0001159;
XX
DE Oryza sativa miR164f stem-loop
XX
RN [1]
RX PUBMED; 15685364.
RA Li Y, Li W, Jin YX;
RT "Computational identification of novel family members of microRNA genes in
RT Arabidopsis thaliana and Oryza sativa";
RL Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0001089"
FT /product="osa-miR164f"
FT /evidence=not_experimental
FT /similarity="MI0000198"
XX
SQ Sequence 210 BP; 29 A; 77 C; 72 G; 0 T; 32 other;
ugaggauggc gaggcgcgcg agguggagaa gcagggcacg ugcauuccua gagcuuccgu 60
ccagcucccc ggcgggcuag cuagcucacu ccgccgccgc cgccgccgcc gccggcgcgc 120
gcacggcugg cuggcuccgg ccggcugaga ugcaugcacg gaugcaugug cccuucuucu 180
ccaccgugca cgccucgccu gcagcaagga 210
//
ID mmu-mir-409 standard; RNA; MMU; 79 BP.
XX
AC MI0001160;
XX
DE Mus musculus miR-409 stem-loop
XX
RN [1]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619396; Mir409.
DR ENTREZGENE; 723862; Mir409.
XX
CC Seitz et al. predicted a cluster of 40 miRNAs in the imprinted human 14q32
CC domain, and confirmed the expression of a subset by Northern blot or
CC primer extension in mouse, including the miR-409-5p [1]. The 3' end of
CC miR-409-5p was not determined and is predicted based on a miRNA length of
CC 23 nts. Landgraf et al. later confirm expression of mature miRNAs from
CC both arms of the hairpin [3]. The mature sequence shown here represents
CC the most commonly cloned form from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0004746"
FT /product="mmu-miR-409-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
FT miRNA 47..68
FT /accession="MIMAT0001090"
FT /product="mmu-miR-409-3p"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2-3], Illumina [4-5]"
XX
SQ Sequence 79 BP; 17 A; 18 C; 23 G; 0 T; 21 other;
ugguacucgg agagagguua cccgagcaac uuugcaucug gaggacgaau guugcucggu 60
gaaccccuuu ucgguauca 79
//
ID mmu-mir-410 standard; RNA; MMU; 81 BP.
XX
AC MI0001161;
XX
DE Mus musculus miR-410 stem-loop
XX
RN [1]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 16566924.
RA Wheeler G, Ntounia-Fousara S, Granda B, Rathjen T, Dalmay T;
RT "Identification of new central nervous system specific mouse microRNAs";
RL FEBS Lett. 580:2195-2200(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [7]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619398; Mir410.
DR ENTREZGENE; 723863; Mir410.
XX
CC Seitz et al. predicted a cluster of 40 miRNAs in the imprinted human 14q32
CC domain, and confirmed the expression of a subset by Northern blot or
CC primer extension in mouse [1]. The mature sequence shown here represents
CC the most commonly cloned form from large-scale cloning studies [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0017172"
FT /product="mmu-miR-410-5p"
FT /evidence=experimental
FT /experiment="454 [6], Illumina [7]"
FT miRNA 50..70
FT /accession="MIMAT0001091"
FT /product="mmu-miR-410-3p"
FT /evidence=experimental
FT /experiment="Northern [1,3], PCR [1], cloned [2-4], insitu
FT [3], Illumina [5,7]"
XX
SQ Sequence 81 BP; 22 A; 12 C; 21 G; 0 T; 26 other;
ggguacuuga ggagagguug ucugugauga guucgcuuua uuaaugacga auauaacaca 60
gauggccugu uuucaauacc a 81
//
ID mmu-mir-376b standard; RNA; MMU; 82 BP.
XX
AC MI0001162;
XX
DE Mus musculus miR-376b stem-loop
XX
RN [1]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17322061.
RA Kawahara Y, Zinshteyn B, Sethupathy P, Iizasa H, Hatzigeorgiou AG,
RA Nishikura K;
RT "Redirection of silencing targets by adenosine-to-inosine editing of
RT miRNAs";
RL Science. 315:1137-1140(2007).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619378; Mir376b.
DR ENTREZGENE; 723934; Mir376b.
XX
CC Seitz et al. predicted a cluster of 40 miRNAs in the imprinted human 14q32
CC domain, and confirmed the expression of a subset by Northern blot or
CC primer extension in mouse [1]. The mature miR-376b products have been
CC shown to be modified by A to I edits [3]. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [4].
XX
FH Key Location/Qualifiers
FH
FT modified_base 56
FT /mod_base=i
FT miRNA 14..35
FT /accession="MIMAT0003388"
FT /product="mmu-miR-376b-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [5-6]"
FT miRNA 51..71
FT /accession="MIMAT0001092"
FT /product="mmu-miR-376b-3p"
FT /evidence=experimental
FT /experiment="Northern [1], PCR [1], cloned [2,4], Illumina
FT [5-6]"
XX
SQ Sequence 82 BP; 22 A; 14 C; 16 G; 0 T; 30 other;
ugguauuuaa aagguggaua uuccuucuau gguuacgugc uuccuggaua aucauagagg 60
aacauccacu uuuucaguau ca 82
//
ID mmu-mir-411 standard; RNA; MMU; 82 BP.
XX
AC MI0001163;
XX
DE Mus musculus miR-411 stem-loop
XX
RN [1]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619399; Mir411.
DR ENTREZGENE; 723936; Mir411.
XX
CC Seitz et al. predicted a cluster of 40 miRNAs in the imprinted human 14q32
CC domain, and confirmed the expression of a subset by Northern blot or
CC primer extension in mouse, including the mature sequence from the 3' arm
CC of this hairpin [1]. Landgraf et al. later showed that the 5' product is
CC the predominant one [2]. The mature sequence shown here represents the
CC most commonly cloned form from large-scale cloning studies [2]. The 5'
CC end of the miRNA may be offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0004747"
FT /product="mmu-miR-411-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 51..72
FT /accession="MIMAT0001093"
FT /product="mmu-miR-411-3p"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2], Illumina [3-4]"
XX
SQ Sequence 82 BP; 22 A; 18 C; 19 G; 0 T; 23 other;
ugguacuugg agagauagua gaccguauag cguacgcuuu aucugugacg uauguaacac 60
gguccacuaa cccucaguau ca 82
//
ID mmu-mir-412 standard; RNA; MMU; 80 BP.
XX
AC MI0001164;
XX
DE Mus musculus miR-412 stem-loop
XX
RN [1]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619400; Mir412.
DR ENTREZGENE; 723913; Mir412.
XX
CC Seitz et al. predicted a cluster of 40 miRNAs in the imprinted human 14q32
CC domain, and confirmed the expression of a subset by Northern blot or
CC primer extension in mouse [1]. The mature sequence shown here represents
CC the most commonly cloned form from large-scale cloning studies [3]. The
CC 5' end of the miRNA may be offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0017173"
FT /product="mmu-miR-412-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 52..71
FT /accession="MIMAT0001094"
FT /product="mmu-miR-412-3p"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2-3], Illumina [4-5]"
XX
SQ Sequence 80 BP; 16 A; 19 C; 24 G; 0 T; 21 other;
ggguauggga cggauggucg accagcugga aaguaauugu uucuaaugua cuucaccugg 60
uccacuagcc gucggugccc 80
//
ID mmu-mir-370 standard; RNA; MMU; 79 BP.
XX
AC MI0001165;
XX
DE Mus musculus miR-370 stem-loop
XX
RN [1]
RX PUBMED; 15310658.
RA Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J;
RT "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain";
RL Genome Res. 14:1741-1748(2004).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [6]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619375; Mir370.
DR ENTREZGENE; 723854; Mir370.
XX
CC Seitz et al. predicted a cluster of 40 miRNAs in the imprinted human 14q32
CC domain, and confirmed the expression of a subset by Northern blot or
CC primer extension in mouse [1]. The mature sequence shown here represents
CC the most commonly cloned form from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..32
FT /accession="MIMAT0017174"
FT /product="mmu-miR-370-5p"
FT /evidence=experimental
FT /experiment="454 [5], Illumina [6]"
FT miRNA 48..69
FT /accession="MIMAT0001095"
FT /product="mmu-miR-370-3p"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2-3], Illumina [4,6]"
XX
SQ Sequence 79 BP; 15 A; 19 C; 25 G; 0 T; 20 other;
agacggagag accaggucac gucucugcag uuacacagcu caugagugcc ugcuggggug 60
gaaccugguu ugucugucu 79
//
ID gga-mir-29a standard; RNA; GGA; 89 BP.
XX
AC MI0001166;
XX
DE Gallus gallus miR-29a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777794; MIR29A.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0026487"
FT /product="gga-miR-29a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 55..75
FT /accession="MIMAT0001096"
FT /product="gga-miR-29a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000576"
XX
SQ Sequence 89 BP; 23 A; 13 C; 20 G; 0 T; 33 other;
accccuuuag aggaugacug auuucuuuug guguucagag ucaauaauau uuucuagcac 60
cauuugaaau cgguuauagu gauugggga 89
//
ID gga-mir-29b-1 standard; RNA; GGA; 81 BP.
XX
AC MI0001167;
XX
DE Gallus gallus miR-29b-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777795; MIR29B-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..33
FT /accession="MIMAT0026488"
FT /product="gga-miR-29b-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 51..73
FT /accession="MIMAT0001097"
FT /product="gga-miR-29b-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000105"
XX
SQ Sequence 81 BP; 19 A; 13 C; 19 G; 0 T; 30 other;
ccucaggaag cugguuucau auggugguuu agauuuaacu auucauuguc uagcaccauu 60
ugaaaucagu guucuuggag g 81
//
ID gga-let-7i standard; RNA; GGA; 84 BP.
XX
AC MI0001168;
XX
DE Gallus gallus let-7i stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777922; MIRLET7I.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0001098"
FT /product="gga-let-7i"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000138"
XX
SQ Sequence 84 BP; 13 A; 17 C; 28 G; 0 T; 26 other;
cuggcugagg uaguaguuug ugcuguuggu cggguuguga cauugcccgc uguggagaua 60
acugcgcaag cuacugccuu gcua 84
//
ID gga-mir-135a-2 standard; RNA; GGA; 100 BP.
XX
AC MI0001169;
XX
DE Gallus gallus miR-135a-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777923; MIR135A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0001099"
FT /product="gga-miR-135a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000453"
FT miRNA 61..82
FT /accession="MIMAT0026489"
FT /product="gga-miR-135a-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 100 BP; 34 A; 12 C; 19 G; 0 T; 35 other;
agauaaauuc acucuagugu uuuauggcuu uuuauuccua ugugauagua auaaagucuc 60
auguagggau ggaagccaug aaauacauug ugaaaaauca 100
//
ID gga-mir-33-1 standard; RNA; GGA; 69 BP.
XX
AC MI0001170;
XX
DE Gallus gallus miR-33 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777924; MIR33.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..25
FT /accession="MIMAT0001100"
FT /product="gga-miR-33-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3]"
FT /similarity="MI0000707"
FT miRNA 47..66
FT /accession="MIMAT0026490"
FT /product="gga-miR-33-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 69 BP; 14 A; 13 C; 20 G; 0 T; 22 other;
cuguagugca uuguaguugc auugcaugug cuggcaguaa cugugcaaug uuccugcagu 60
gcaguacag 69
//
ID gga-let-7a-3 standard; RNA; GGA; 76 BP.
XX
AC MI0001171;
XX
DE Gallus gallus let-7a-3 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777925; MIRLET7A-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0001101"
FT /product="gga-let-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [3]"
FT /similarity="MI0000556"
FT miRNA 54..75
FT /accession="MIMAT0026491"
FT /product="gga-let-7a-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 76 BP; 16 A; 13 C; 19 G; 0 T; 28 other;
gggugaggua guagguugua uaguuuuagg guuaugcccu gccugucaga uaacuauaca 60
aucuacuguc uuuccu 76
//
ID gga-let-7b standard; RNA; GGA; 85 BP.
XX
AC MI0001172;
XX
DE Gallus gallus let-7b stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RA McBride D, Carre W, Law A, Clinton M;
RT ";
RL Unpublished.
XX
DR ENTREZGENE; 777926; MIRLET7B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0001102"
FT /product="gga-let-7b"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000558"
XX
SQ Sequence 85 BP; 20 A; 17 C; 23 G; 0 T; 25 other;
caggaugagg uaguagguug ugugguuuca ggguagugau uuugccccaa ucaggagaua 60
acuauacaac cuacugccuu cccug 85
//
ID gga-mir-99a standard; RNA; GGA; 81 BP.
XX
AC MI0001173;
XX
DE Gallus gallus miR-99a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RA McBride D, Carre W, Law A, Clinton M;
RT ";
RL Unpublished.
XX
RN [3]
RX PUBMED; 18511220.
RA Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH;
RT "Identification of novel chicken microRNAs and analysis of their genomic
RT organization";
RL Gene. 418:34-40(2008).
XX
DR ENTREZGENE; 777927; MIR99A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0001103"
FT /product="gga-miR-99a-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000101"
FT miRNA 50..70
FT /accession="MIMAT0006781"
FT /product="gga-miR-99a-3p"
FT /evidence=experimental
FT /experiment="cloned [3]"
XX
SQ Sequence 81 BP; 19 A; 19 C; 19 G; 0 T; 24 other;
ccaauuggca uaaacccgua gauccgaucu uguguugaaa ugcacugcac aagcucgcuu 60
cuaugggucu gugucaguau g 81
//
ID gga-let-7c standard; RNA; GGA; 84 BP.
XX
AC MI0001174;
XX
DE Gallus gallus let-7c stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777928; MIRLET7C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001104"
FT /product="gga-let-7c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000559"
FT miRNA 56..77
FT /accession="MIMAT0026492"
FT /product="gga-let-7c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 84 BP; 17 A; 16 C; 24 G; 0 T; 27 other;
gcauccgggu ugagguagua gguuguaugg uuuagaguua cacccuggga guuaacugua 60
caaccuucua gcuuuccuug gagc 84
//
ID gga-mir-125b-2 standard; RNA; GGA; 90 BP.
XX
AC MI0001175;
XX
DE Gallus gallus miR-125b-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777929; MIR125B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0001105"
FT /product="gga-miR-125b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000470"
FT miRNA 57..78
FT /accession="MIMAT0026493"
FT /product="gga-miR-125b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 90 BP; 22 A; 21 C; 24 G; 0 T; 23 other;
aucagacuuu uccuaguccc ugagacccua acuugugagg uuuuguagca acaaucacaa 60
gucaggcucu ugggaccuag gcggagggga 90
//
ID gga-mir-155 standard; RNA; GGA; 63 BP.
XX
AC MI0001176;
XX
DE Gallus gallus miR-155 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
DR ENTREZGENE; 777930; MIR155.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..24
FT /accession="MIMAT0001106"
FT /product="gga-miR-155"
FT /evidence=not_experimental
FT /similarity="MI0000681"
XX
SQ Sequence 63 BP; 17 A; 11 C; 12 G; 0 T; 23 other;
uguuaaugcu aaucgugaua gggguuuuua ccucugaaug acuccuacau guuagcauua 60
aca 63
//
ID gga-mir-222a standard; RNA; GGA; 98 BP.
XX
AC MI0001177;
XX
DE Gallus gallus miR-222a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777931; MIR222-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..80
FT /accession="MIMAT0001107"
FT /product="gga-miR-222a"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000299"
XX
SQ Sequence 98 BP; 22 A; 24 C; 19 G; 0 T; 33 other;
uguaguugcc caucaaucgc ucaguaguca guguagauuc ugucuuuaca aucagcagcu 60
acaucuggcu acugggucuc ugaugacauc ucauaucu 98
//
ID gga-mir-221 standard; RNA; GGA; 99 BP.
XX
AC MI0001178;
XX
DE Gallus gallus miR-221 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777932; MIR221.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..49
FT /accession="MIMAT0026494"
FT /product="gga-miR-221-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 64..86
FT /accession="MIMAT0001108"
FT /product="gga-miR-221-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000961"
XX
SQ Sequence 99 BP; 21 A; 20 C; 27 G; 0 T; 31 other;
gacuguccag guuuggggca ugaaccuggc auacaaugua gauuucugug uuuguuaagc 60
aacagcuaca uugucugcug gguuuccagc ugccuggaa 99
//
ID gga-mir-92-1 standard; RNA; GGA; 78 BP.
XX
AC MI0001179;
XX
DE Gallus gallus miR-92 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777933; MIR92.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0026495"
FT /product="gga-miR-92-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 48..68
FT /accession="MIMAT0001109"
FT /product="gga-miR-92-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000093"
XX
SQ Sequence 78 BP; 10 A; 16 C; 24 G; 0 T; 28 other;
cuuucuacac agguugggau caguugcaau gcugugcguu ucugugguau ugcacuuguc 60
ccggccuguu gagguugg 78
//
ID gga-mir-19b standard; RNA; GGA; 87 BP.
XX
AC MI0001180;
XX
DE Gallus gallus miR-19b stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777934; MIR19B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0026496"
FT /product="gga-miR-19b-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 54..76
FT /accession="MIMAT0001110"
FT /product="gga-miR-19b-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000074"
XX
SQ Sequence 87 BP; 18 A; 19 C; 21 G; 0 T; 29 other;
cacuguucuc ugguuaguuu ugcagguuug cauccagcug uaugauacuc ugcugugcaa 60
auccaugcaa aacugacugu ggcagug 87
//
ID gga-mir-20a standard; RNA; GGA; 98 BP.
XX
AC MI0001181;
XX
DE Gallus gallus miR-20a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777935; MIR20A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0001111"
FT /product="gga-miR-20a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000568"
FT miRNA 50..77
FT /accession="MIMAT0026497"
FT /product="gga-miR-20a-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 98 BP; 30 A; 19 C; 19 G; 0 T; 30 other;
ugacagcucu uguagcacua aagugcuuau agugcaggua guguucacua aucuacugca 60
uuauaagcac uuaaaguacu gcuagcugua gaacuaca 98
//
ID gga-mir-19a standard; RNA; GGA; 81 BP.
XX
AC MI0001182;
XX
DE Gallus gallus miR-19a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777936; MIR19A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0026498"
FT /product="gga-miR-19a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 49..71
FT /accession="MIMAT0001112"
FT /product="gga-miR-19a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000073"
XX
SQ Sequence 81 BP; 21 A; 13 C; 21 G; 0 T; 26 other;
gcagucuucu guuaguuuug cauaguugca cuacaggaag aauguaguug ugcaaaucua 60
ugcaaaacug augguggccu g 81
//
ID gga-mir-18a standard; RNA; GGA; 93 BP.
XX
AC MI0001183;
XX
DE Gallus gallus miR-18a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777937; MIR18A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001113"
FT /product="gga-miR-18a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000567"
FT miRNA 55..76
FT /accession="MIMAT0026499"
FT /product="gga-miR-18a-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 93 BP; 23 A; 17 C; 22 G; 0 T; 31 other;
gugcuuuuug uacuaaggug caucuagugc agauagugaa guagauuagc aucuacugcc 60
cuaagugcuc cuucuggcau aagaaguuau guc 93
//
ID gga-mir-17 standard; RNA; GGA; 85 BP.
XX
AC MI0001184;
XX
DE Gallus gallus miR-17 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777938; MIR17.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..37
FT /accession="MIMAT0001114"
FT /product="gga-miR-17-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000071"
FT miRNA 52..71
FT /accession="MIMAT0001115"
FT /product="gga-miR-17-3p"
FT /evidence=not_experimental
FT /similarity="MI0000071"
XX
SQ Sequence 85 BP; 26 A; 13 C; 22 G; 0 T; 24 other;
gucagaguaa ugucaaagug cuuacagugc agguagugau auauagaacc uacugcagug 60
aaggcacuug uagcauuaug uugac 85
//
ID gga-mir-16-1 standard; RNA; GGA; 84 BP.
XX
AC MI0001185;
XX
DE Gallus gallus miR-16-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777939; MIR16-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001116"
FT /product="gga-miR-16-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000070"
FT miRNA 54..76
FT /accession="MIMAT0026500"
FT /product="gga-miR-16-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 84 BP; 25 A; 15 C; 17 G; 0 T; 27 other;
gucugucaua cucuagcagc acguaaauau ugguguuaaa acuguaaaua ucuccaguau 60
uaacugugcu gcugaaguaa ggcu 84
//
ID gga-mir-15a standard; RNA; GGA; 83 BP.
XX
AC MI0001186;
XX
DE Gallus gallus miR-15a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
RN [3]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777940; MIR15A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0001117"
FT /product="gga-miR-15a"
FT /evidence=experimental
FT /experiment="cloned [2-3], Northern [2]"
FT /similarity="MI0000069"
XX
SQ Sequence 83 BP; 24 A; 15 C; 22 G; 0 T; 22 other;
ccuuggcaua acguagcagc acauaauggu uuguggguuu ugaaaaggug caggccauau 60
ugugcugccu caaaaauaca agg 83
//
ID gga-mir-26a standard; RNA; GGA; 77 BP.
XX
AC MI0001187;
XX
DE Gallus gallus miR-26a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777941; MIR26A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0001118"
FT /product="gga-miR-26a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000083"
FT miRNA 49..71
FT /accession="MIMAT0026501"
FT /product="gga-miR-26a-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 77 BP; 14 A; 19 C; 20 G; 0 T; 24 other;
gucaccuggu ucaaguaauc caggauaggc uguauccauu ccugcuggcc uauucuuggu 60
uacuugcacu gggaggc 77
//
ID gga-mir-153 standard; RNA; GGA; 87 BP.
XX
AC MI0001188;
XX
DE Gallus gallus miR-153 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777942; MIR153.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0026502"
FT /product="gga-miR-153-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 53..72
FT /accession="MIMAT0001119"
FT /product="gga-miR-153-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000464"
XX
SQ Sequence 87 BP; 23 A; 14 C; 23 G; 0 T; 27 other;
agcgguugcc agugucauuu uugugauguu gcagcuagua auaugagccc aguugcauag 60
ucacaaaagu gaucauugga aacugug 87
//
ID gga-mir-148a standard; RNA; GGA; 68 BP.
XX
AC MI0001189;
XX
DE Gallus gallus miR-148a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777943; MIR148A.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0026503"
FT /product="gga-miR-148a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 44..65
FT /accession="MIMAT0001120"
FT /product="gga-miR-148a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000253"
XX
SQ Sequence 68 BP; 19 A; 16 C; 15 G; 0 T; 18 other;
gaagcaaagu ucugugacac ucagacucug guuacgauag cagucagugc acuacagaac 60
uuugucuc 68
//
ID gga-mir-196-2 standard; RNA; GGA; 94 BP.
XX
AC MI0001190;
XX
DE Gallus gallus miR-196-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777944; MIR196-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0001121"
FT /product="gga-miR-196-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001151"
FT miRNA 53..74
FT /accession="MIMAT0026504"
FT /product="gga-miR-196-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 94 BP; 19 A; 22 C; 18 G; 0 T; 35 other;
aacugcucug ugguuuaggu aguuucaugu uguuggggcu ccaccuuucu cucuacagca 60
cgaaacugcc uuaauuacuu caguugauau cauc 94
//
ID gga-mir-138-1 standard; RNA; GGA; 96 BP.
XX
AC MI0001191;
XX
DE Gallus gallus miR-138-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777945; MIR138-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..38
FT /accession="MIMAT0001122"
FT /product="gga-miR-138-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000912"
FT miRNA 64..83
FT /accession="MIMAT0026505"
FT /product="gga-miR-138-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 96 BP; 20 A; 31 C; 29 G; 0 T; 16 other;
cccugccggg ugccgugcag cagcuggugu ugugaaucag gccgucacca gucggagaac 60
ggcuacuuca caacaccagg guggcacugc accaca 96
//
ID gga-mir-128-2 standard; RNA; GGA; 84 BP.
XX
AC MI0001192;
XX
DE Gallus gallus miR-128-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777796; MIR128-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0026506"
FT /product="gga-miR-128-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 52..72
FT /accession="MIMAT0001123"
FT /product="gga-miR-128-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2], Illumina [3]"
FT /similarity="MI0000727"
XX
SQ Sequence 84 BP; 16 A; 19 C; 27 G; 0 T; 22 other;
uguccagcug gaaggggggc cguuacacug uaagagagug aguagcaggu cucacaguga 60
accggucucu uuuccugcug uguc 84
//
ID gga-mir-187 standard; RNA; GGA; 86 BP.
XX
AC MI0001193;
XX
DE Gallus gallus miR-187 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777797; MIR187.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0026507"
FT /product="gga-miR-187-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 56..75
FT /accession="MIMAT0001124"
FT /product="gga-miR-187-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000274"
XX
SQ Sequence 86 BP; 21 A; 22 C; 23 G; 0 T; 20 other;
aaacuauugu gagaccuccg gcuacaacac aggacauggg agcuuuucug aacccucgug 60
ucuuguguug cagccagagg ggcaca 86
//
ID gga-mir-32 standard; RNA; GGA; 70 BP.
XX
AC MI0001194;
XX
DE Gallus gallus miR-32 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777798; MIR32.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0001125"
FT /product="gga-miR-32-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000090"
FT miRNA 48..67
FT /accession="MIMAT0026508"
FT /product="gga-miR-32-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 70 BP; 16 A; 13 C; 17 G; 0 T; 24 other;
ggagauauug cacauuacua aguugcaugu ugucacggcc ucagugcaau uuagugugug 60
cgauacuuuc 70
//
ID gga-mir-133a-1 standard; RNA; GGA; 87 BP.
XX
AC MI0001195;
XX
DE Gallus gallus miR-133a-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777799; MIR133A-1.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0026509"
FT /product="gga-miR-133a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 53..74
FT /accession="MIMAT0001126"
FT /product="gga-miR-133a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000906"
XX
SQ Sequence 87 BP; 25 A; 21 C; 16 G; 0 T; 25 other;
caaugcuuug cuaaagcugg uaaaauggaa ccaaaucacc ucuucaaugg auuugguccc 60
cuucaaccag cuguagcuau gcauuga 87
//
ID gga-mir-1a-2 standard; RNA; GGA; 85 BP.
XX
AC MI0001196;
XX
DE Gallus gallus miR-1a-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777800; MIR1A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0026510"
FT /product="gga-miR-1a-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 53..73
FT /accession="MIMAT0001127"
FT /product="gga-miR-1a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000437"
XX
SQ Sequence 85 BP; 27 A; 16 C; 16 G; 0 T; 26 other;
accugcucag agcacauacu ucuuuaugua cccauaugaa cauacaaugc uauggaaugu 60
aaagaaguau guauuuuugg caggc 85
//
ID gga-mir-124a standard; RNA; GGA; 96 BP.
XX
AC MI0001197;
XX
DE Gallus gallus miR-124a stem-loop
XX
RN [1]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777801; MIR124A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..36
FT /accession="MIMAT0026511"
FT /product="gga-miR-124a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 51..72
FT /accession="MIMAT0001128"
FT /product="gga-miR-124a-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT /similarity="MI0000444"
XX
SQ Sequence 96 BP; 22 A; 26 C; 25 G; 0 T; 23 other;
aggcucugcc ucuccguguu cacagcggac cuugauuuaa ugucauacaa uuaaggcacg 60
cggugaaugc caagagcgga uccuccaggc ggcauu 96
//
ID gga-mir-30d standard; RNA; GGA; 64 BP.
XX
AC MI0001198;
XX
DE Gallus gallus miR-30d stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777802; MIR30D.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0001129"
FT /product="gga-miR-30d"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000255"
XX
SQ Sequence 64 BP; 13 A; 15 C; 17 G; 0 T; 19 other;
guugcuguaa acauccccga cuggaagcug uagcagcuug agcuuucagu cagauguuug 60
cugc 64
//
ID gga-mir-30b standard; RNA; GGA; 87 BP.
XX
AC MI0001199;
XX
DE Gallus gallus miR-30b stem-loop
XX
RN [1]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
RN [4]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777803; MIR30B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001130"
FT /product="gga-miR-30b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], Illumina [4]"
FT /similarity="MI0000441"
FT miRNA 54..75
FT /accession="MIMAT0026512"
FT /product="gga-miR-30b-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 87 BP; 22 A; 17 C; 21 G; 0 T; 27 other;
cuaacuuuua guuccuguaa acauccuaca cucagcuaua acaaguggua gggcuggggg 60
guggauguuu acuucaacug acuugga 87
//
ID gga-mir-216a standard; RNA; GGA; 106 BP.
XX
AC MI0001200;
XX
DE Gallus gallus miR-216 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
DR ENTREZGENE; 777804; MIR216.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0001131"
FT /product="gga-miR-216a"
FT /evidence=not_experimental
FT /similarity="MI0000292"
XX
SQ Sequence 106 BP; 28 A; 19 C; 24 G; 0 T; 35 other;
gauggcugug aauuggcuua aucucagcug gcaacuguga gcaguuaaua auucucacag 60
ugguaucugg gauuaugcua aacacagcaa uuucuuugcu cuaaug 106
//
ID gga-mir-217 standard; RNA; GGA; 107 BP.
XX
AC MI0001201;
XX
DE Gallus gallus miR-217 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777805; MIR217.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 32..55
FT /accession="MIMAT0001132"
FT /product="gga-miR-217-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000293"
FT miRNA 68..90
FT /accession="MIMAT0026513"
FT /product="gga-miR-217-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 107 BP; 34 A; 24 C; 20 G; 0 T; 29 other;
aaagucacug cagaguucuu gaugucgcag auacugcauc aggaacugau uggauaauaa 60
ucagucacca ucaguuccua augcauugcc uucagcaucu aaacaag 107
//
ID gga-mir-194 standard; RNA; GGA; 75 BP.
XX
AC MI0001202;
XX
DE Gallus gallus miR-194 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
DR ENTREZGENE; 777806; MIR194.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001133"
FT /product="gga-miR-194"
FT /evidence=not_experimental
FT /similarity="MI0000488"
XX
SQ Sequence 75 BP; 18 A; 16 C; 17 G; 0 T; 24 other;
uggugcucuc auauguaaca gcaacuccau guggacuaca cugacuucca guggagaugc 60
uguuacuuuu gauag 75
//
ID gga-mir-215 standard; RNA; GGA; 105 BP.
XX
AC MI0001203;
XX
DE Gallus gallus miR-215 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777807; MIR215.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..46
FT /accession="MIMAT0001134"
FT /product="gga-miR-215-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000291"
FT miRNA 62..84
FT /accession="MIMAT0026514"
FT /product="gga-miR-215-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 105 BP; 29 A; 22 C; 19 G; 0 T; 35 other;
ucaguaagaa cuggugucca ggaaaaugac cuaugaauug acagacugcu uucaaaaugu 60
gccugucauu ucuauaggcc aauauucugu gcacuuuucc uacuu 105
//
ID gga-mir-30a standard; RNA; GGA; 72 BP.
XX
AC MI0001204;
XX
DE Gallus gallus miR-30a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777808; MIR30A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0001135"
FT /product="gga-miR-30a-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000088"
FT miRNA 48..69
FT /accession="MIMAT0001136"
FT /product="gga-miR-30a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000088"
XX
SQ Sequence 72 BP; 16 A; 16 C; 23 G; 0 T; 17 other;
gcgacuguaa acauccucga cuggaagcug ugaagcagca gauggggcuu ucagucggau 60
guuugcagcu gc 72
//
ID gga-mir-30c-2 standard; RNA; GGA; 72 BP.
XX
AC MI0001205;
XX
DE Gallus gallus miR-30c-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
RN [3]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [4]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777809; MIR30C-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..30
FT /accession="MIMAT0001137"
FT /product="gga-miR-30c-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Northern [2], Illumina [4]"
FT /similarity="MI0000871"
FT miRNA 48..68
FT /accession="MIMAT0026515"
FT /product="gga-miR-30c-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 72 BP; 21 A; 17 C; 16 G; 0 T; 18 other;
agguacugua aacauccuac acucucagcu guggaaacua agaaagcugg gagaaggcug 60
uuuacucucc cu 72
//
ID gga-mir-133b standard; RNA; GGA; 84 BP.
XX
AC MI0001206;
XX
DE Gallus gallus miR-133b stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
DR ENTREZGENE; 777810; MIR133B.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..69
FT /accession="MIMAT0001138"
FT /product="gga-miR-133b"
FT /evidence=not_experimental
FT /similarity="MI0000822"
XX
SQ Sequence 84 BP; 18 A; 24 C; 20 G; 0 T; 22 other;
cucugcucug gcuggucaaa cggaaccaag cccgucuucu ucggagguuu gguccccuuc 60
aaccagcuau agcaguguug aaaa 84
//
ID gga-mir-206 standard; RNA; GGA; 76 BP.
XX
AC MI0001207;
XX
DE Gallus gallus miR-206 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
DR ENTREZGENE; 777811; MIR206.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 45..66
FT /accession="MIMAT0001139"
FT /product="gga-miR-206"
FT /evidence=not_experimental
FT /similarity="MI0000490"
XX
SQ Sequence 76 BP; 19 A; 10 C; 23 G; 0 T; 24 other;
gagaugacau gcuucuuuau auccccauau ggauuaggcu gcuauggaau guaaggaagu 60
gugugguuuc agggag 76
//
ID gga-mir-223 standard; RNA; GGA; 100 BP.
XX
AC MI0001208;
XX
DE Gallus gallus miR-223 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RA McBride D, Carre W, Law A, Clinton M;
RT ";
RL Unpublished.
XX
DR ENTREZGENE; 777812; MIR223.
XX
FH Key Location/Qualifiers
FH
FT miRNA 59..79
FT /accession="MIMAT0001140"
FT /product="gga-miR-223"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000300"
XX
SQ Sequence 100 BP; 24 A; 23 C; 27 G; 0 T; 26 other;
cugcagugca gcacugcgug uauuugacaa gcugaguuug acacucaguc uggcagagug 60
ucaguuuguc aaauacccca agugaggcac uugcugagca 100
//
ID gga-mir-18b standard; RNA; GGA; 84 BP.
XX
AC MI0001209;
XX
DE Gallus gallus miR-18b stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777813; MIR18B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0001141"
FT /product="gga-miR-18b-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000567"
FT miRNA 55..79
FT /accession="MIMAT0026516"
FT /product="gga-miR-18b-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 84 BP; 18 A; 19 C; 22 G; 0 T; 25 other;
cgugguccuu guguuaaggu gcaucuagug caguuaguga cguagcguag aaucuacugc 60
ccuaaaugcu ccuucuggca caag 84
//
ID gga-mir-106 standard; RNA; GGA; 81 BP.
XX
AC MI0001210;
XX
DE Gallus gallus miR-106 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777814; MIR106.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001142"
FT /product="gga-miR-106-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000113"
FT miRNA 49..70
FT /accession="MIMAT0026517"
FT /product="gga-miR-106-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 81 BP; 20 A; 19 C; 22 G; 0 T; 20 other;
ccuugaguug ugcaaaagug cuuacagugc agguagagcu cagcaccuac ugcaguauaa 60
gcacuucugg caugaccgug g 81
//
ID gga-mir-302a standard; RNA; GGA; 67 BP.
XX
AC MI0001211;
XX
DE Gallus gallus miR-302a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
DR ENTREZGENE; 777815; MIR302A.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 43..64
FT /accession="MIMAT0001143"
FT /product="gga-miR-302a"
FT /evidence=not_experimental
FT /similarity="MI0000738"
XX
SQ Sequence 67 BP; 17 A; 10 C; 16 G; 0 T; 24 other;
ccacaacuua aauguggaug ugcuugcuuu guucugaaaa gaaagugcuu ccauguuuua 60
gugaugg 67
//
ID gga-mir-218-1 standard; RNA; GGA; 109 BP.
XX
AC MI0001212;
XX
DE Gallus gallus miR-218-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777816; MIR218-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0001144"
FT /product="gga-miR-218-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000294"
FT miRNA 66..87
FT /accession="MIMAT0026518"
FT /product="gga-miR-218-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 109 BP; 28 A; 19 C; 27 G; 0 T; 35 other;
ugauaaugua gcgagauuuu cuguugugcu ugaucuaacc augugguugu gagguaugag 60
uaaaacaugg uucugucaag caccauggaa cgucacgcag cuuucuaca 109
//
ID gga-mir-103-2 standard; RNA; GGA; 83 BP.
XX
AC MI0001213;
XX
DE Gallus gallus miR-103-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777817; MIR103-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0026519"
FT /product="gga-miR-103-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 51..73
FT /accession="MIMAT0001145"
FT /product="gga-miR-103-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000588"
XX
SQ Sequence 83 BP; 18 A; 18 C; 20 G; 0 T; 27 other;
ucucugugcu uucagcuucu uuacagugcu gccuuguugc guucauguca agcagcauug 60
uacagggcua ugaaagaaca gag 83
//
ID gga-mir-203a standard; RNA; GGA; 98 BP.
XX
AC MI0001214;
XX
DE Gallus gallus miR-203 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RA McBride D, Carre W, Law A, Clinton M;
RT ";
RL Unpublished.
XX
DR ENTREZGENE; 777818; MIR203.
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..77
FT /accession="MIMAT0001146"
FT /product="gga-miR-203a"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000283"
XX
SQ Sequence 98 BP; 22 A; 25 C; 23 G; 0 T; 28 other;
cucagccucc uuggugcagu gguucuuaac aguucaacag uucucuauca uaauugugaa 60
auguuuagga ccacuugacc agcgaggccc gggcaucg 98
//
ID gga-mir-107 standard; RNA; GGA; 81 BP.
XX
AC MI0001215;
XX
DE Gallus gallus miR-107 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777819; MIR107.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0026520"
FT /product="gga-miR-107-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 50..72
FT /accession="MIMAT0001147"
FT /product="gga-miR-107-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000684"
XX
SQ Sequence 81 BP; 17 A; 17 C; 20 G; 0 T; 27 other;
cucuuugcuu ucagcuucuu uacaguguug ccuuguggca uggaguucaa gcagcauugu 60
acagggcuau caaagcaugg a 81
//
ID gga-mir-10b standard; RNA; GGA; 110 BP.
XX
AC MI0001216;
XX
DE Gallus gallus miR-10b stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777820; MIR10B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..48
FT /accession="MIMAT0001148"
FT /product="gga-miR-10b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000267"
FT miRNA 68..88
FT /accession="MIMAT0026521"
FT /product="gga-miR-10b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 110 BP; 35 A; 18 C; 21 G; 0 T; 36 other;
cagaacguua uuacguuguc uauauauacc cuguagaacc gaauuugugu gauauucaua 60
uagucacaga uucgauucua ggggaauaua uggucgaugc aaaaacuuca 110
//
ID gga-mir-128-1 standard; RNA; GGA; 82 BP.
XX
AC MI0001217;
XX
DE Gallus gallus miR-128-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777821; MIR128-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0031096"
FT /product="gga-miR-128-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 50..70
FT /accession="MIMAT0001123"
FT /product="gga-miR-128-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2], Illumina [3]"
FT /similarity="MI0000447"
XX
SQ Sequence 82 BP; 15 A; 18 C; 20 G; 0 T; 29 other;
ugagcuguug aauucggggc cguaacacug ucugagaggu uuauauuucu cacagugaac 60
cggucucuuu uucagcugcu uc 82
//
ID gga-mir-181a-1 standard; RNA; GGA; 104 BP.
XX
AC MI0001218;
XX
DE Gallus gallus miR-181a-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777822; MIR181A-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0001168"
FT /product="gga-miR-181a-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000289"
FT miRNA 60..81
FT /accession="MIMAT0001150"
FT /product="gga-miR-181a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000289"
XX
SQ Sequence 104 BP; 24 A; 26 C; 22 G; 0 T; 32 other;
uguagugguu gcuucaguga acauucaacg cugucgguga guuuggaauu uaagugaaaa 60
ccaucgaccg uugauuguac ccuccagcua accauccucc uccu 104
//
ID gga-mir-181b-1 standard; RNA; GGA; 89 BP.
XX
AC MI0001219;
XX
DE Gallus gallus miR-181b-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777823; MIR181B-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0001151"
FT /product="gga-miR-181b-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000270"
FT miRNA 56..76
FT /accession="MIMAT0026522"
FT /product="gga-miR-181b-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 89 BP; 28 A; 20 C; 19 G; 0 T; 22 other;
aaaaggucac aaucaacauu cauugcuguc gguggguuua acuaugugga caagcucacu 60
gaacaaugaa ugcaacugug gccccacau 89
//
ID gga-mir-199-2 standard; RNA; GGA; 108 BP.
XX
AC MI0001220;
XX
DE Gallus gallus miR-199-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
DR ENTREZGENE; 777824; MIR199-2.
XX
CC Chicken has two loci predicted to express miR-199. mir-199-2
CC (MIR:MI0001220) is homologous to mir-199a-2 in human (MIR:MI0000281) and
CC mouse (MIR:MI0000713). mir-199-1 (MIR:MI0001245) is homologous to
CC mir-199b in human (MIR:MI0000282) and mouse (MIR:MI0000714). The
CC expression of chicken miR-199 has been verified experimentally [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..51
FT /accession="MIMAT0001152"
FT /product="gga-miR-199-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2]"
FT /similarity="MI0000281"
FT miRNA 67..86
FT /accession="MIMAT0003721"
FT /product="gga-miR-199-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2]"
XX
SQ Sequence 108 BP; 25 A; 27 C; 31 G; 0 T; 25 other;
gaagcguccg gagauccugc uccgucgccc caguguucag acuaccuguu caggacaaug 60
cuguuguaca guagucugca cauugguuag acugggcaag ggaaagca 108
//
ID gga-mir-137 standard; RNA; GGA; 96 BP.
XX
AC MI0001221;
XX
DE Gallus gallus miR-137 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777825; MIR137.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..41
FT /accession="MIMAT0026523"
FT /product="gga-miR-137-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 55..76
FT /accession="MIMAT0001153"
FT /product="gga-miR-137-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000454"
XX
SQ Sequence 96 BP; 20 A; 17 C; 30 G; 0 T; 29 other;
ucugacucuc uucggugacg gguauucuug gguggauaau acggauuacg uuguuauugc 60
uuaagaauac gcguagucga ggagaguacc ggcggc 96
//
ID gga-mir-16-2 standard; RNA; GGA; 94 BP.
XX
AC MI0001222;
XX
DE Gallus gallus miR-16-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777826; MIR16-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0001116"
FT /product="gga-miR-16-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000844"
FT miRNA 60..81
FT /accession="MIMAT0031058"
FT /product="gga-miR-16-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 94 BP; 28 A; 21 C; 18 G; 0 T; 27 other;
ccuacuuguu ccgcccuagc agcacguaaa uauuggugua guaaaauaaa ccuuaaaccc 60
caauauuauu gugcugcuua agcguggcag agau 94
//
ID gga-mir-15b standard; RNA; GGA; 91 BP.
XX
AC MI0001223;
XX
DE Gallus gallus miR-15b stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777827; MIR15B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0001154"
FT /product="gga-miR-15b-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000438"
FT miRNA 58..78
FT /accession="MIMAT0026524"
FT /product="gga-miR-15b-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 91 BP; 27 A; 14 C; 21 G; 0 T; 29 other;
ugaggccuua aaguacucua gcagcacauc augguuugca ugcuguagug aagaugcgaa 60
ucauuauuug cugcuuuaga aauuuaagga a 91
//
ID gga-mir-190a standard; RNA; GGA; 85 BP.
XX
AC MI0001224;
XX
DE Gallus gallus miR-190 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777828; MIR190.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0001155"
FT /product="gga-miR-190a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000486"
FT miRNA 52..72
FT /accession="MIMAT0026525"
FT /product="gga-miR-190a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 85 BP; 23 A; 15 C; 14 G; 0 T; 33 other;
ugcaggacuc ugugugauau guuugauaua uuagguuguu auuuaaucca acuauauauc 60
aaacauauuc cuacaguguc cugcc 85
//
ID gga-mir-204-2 standard; RNA; GGA; 101 BP.
XX
AC MI0001225;
XX
DE Gallus gallus miR-204-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
DR ENTREZGENE; 777829; MIR204-2.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..48
FT /accession="MIMAT0001156"
FT /product="gga-miR-204"
FT /evidence=not_experimental
FT /similarity="MI0000708"
XX
SQ Sequence 101 BP; 19 A; 26 C; 29 G; 0 T; 27 other;
cuacugagac ugugugaccu gugggcuucc cuuugucauc cuaugccugg agaucacagu 60
gaggcaggga cagcaaaggg augcucagcu gucgucucuu c 101
//
ID gga-mir-7-2 standard; RNA; GGA; 99 BP.
XX
AC MI0001226;
XX
DE Gallus gallus miR-7-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777830; MIR7-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0001157"
FT /product="gga-miR-7"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000728"
XX
SQ Sequence 99 BP; 18 A; 31 C; 28 G; 0 T; 22 other;
ggacggccgc ggugcccucu ggaagacuag ugauuuuguu guuguauggc ucaucccacc 60
acaacaaguc acagucugcc uuagggcgca cggccccgc 99
//
ID gga-mir-184 standard; RNA; GGA; 74 BP.
XX
AC MI0001227;
XX
DE Gallus gallus miR-184 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777831; MIR184.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0026526"
FT /product="gga-miR-184-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 53..74
FT /accession="MIMAT0001158"
FT /product="gga-miR-184-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000481"
XX
SQ Sequence 74 BP; 13 A; 25 C; 15 G; 0 T; 21 other;
ccgcucucac ccccuuauca cuuuuccagc ccagcuucuu cgcucugacu guuggacgga 60
gaacugauaa gggu 74
//
ID gga-mir-138-2 standard; RNA; GGA; 83 BP.
XX
AC MI0001228;
XX
DE Gallus gallus miR-138-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777832; MIR138-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..25
FT /accession="MIMAT0001122"
FT /product="gga-miR-138-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000455"
FT miRNA 58..77
FT /accession="MIMAT0031069"
FT /product="gga-miR-138-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 83 BP; 16 A; 23 C; 22 G; 0 T; 22 other;
guugcugcag cugguguugu gaaucaggcc gacggcaagc gcuuccuacu auccggcuau 60
uucacuacac caggguugca uca 83
//
ID gga-mir-140 standard; RNA; GGA; 95 BP.
XX
AC MI0001229;
XX
DE Gallus gallus miR-140 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
RN [3]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777833; MIR140.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..42
FT /accession="MIMAT0001159"
FT /product="gga-miR-140-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT /similarity="MI0000456"
FT miRNA 62..82
FT /accession="MIMAT0003722"
FT /product="gga-miR-140-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2]"
XX
SQ Sequence 95 BP; 15 A; 26 C; 29 G; 0 T; 25 other;
ugcgucucuc cguguccugc cagugguuuu acccuauggu agguuacguc augcuguucu 60
accacagggu agaaccacgg acgggaugcc ggggc 95
//
ID gga-let-7g standard; RNA; GGA; 83 BP.
XX
AC MI0001230;
XX
DE Gallus gallus let-7g stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777834; MIRLET7G.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..25
FT /accession="MIMAT0001160"
FT /product="gga-let-7g-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000137"
FT miRNA 62..83
FT /accession="MIMAT0026527"
FT /product="gga-let-7g-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 83 BP; 20 A; 18 C; 24 G; 0 T; 21 other;
aggcugaggu aguaguuugu acaguuugag ggucuaugau accacccggu acaggagaua 60
acuguacagg ccacugccuu gcc 83
//
ID gga-mir-135a-1 standard; RNA; GGA; 88 BP.
XX
AC MI0001231;
XX
DE Gallus gallus miR-135a-1 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777835; MIR135A-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0001099"
FT /product="gga-miR-135a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
FT /similarity="MI0000161"
FT miRNA 54..75
FT /accession="MIMAT0031036"
FT /product="gga-miR-135a-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 88 BP; 16 A; 21 C; 22 G; 0 T; 29 other;
gccucacugu ccuguauggc uuuuuauucc uaugugauua uacaucccgc uucauauagg 60
gauugaagcc gugcaaggcg cugggguc 88
//
ID gga-let-7d standard; RNA; GGA; 103 BP.
XX
AC MI0001232;
XX
DE Gallus gallus let-7d stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
DR ENTREZGENE; 777836; MIRLET7D.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0001161"
FT /product="gga-let-7d"
FT /evidence=not_experimental
FT /similarity="MI0000405"
XX
SQ Sequence 103 BP; 23 A; 17 C; 30 G; 0 T; 33 other;
auugggcucc uaggaagagg uaguggguug cauaguuuua gggcagggau uuugcucaca 60
aggagguaac uauacaaccu gcugccuuuc uuagggcuuu auu 103
//
ID gga-let-7f standard; RNA; GGA; 87 BP.
XX
AC MI0001233;
XX
DE Gallus gallus let-7f stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777837; MIRLET7F.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0001162"
FT /product="gga-let-7f-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000067"
FT miRNA 63..84
FT /accession="MIMAT0026528"
FT /product="gga-let-7f-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 87 BP; 23 A; 13 C; 20 G; 0 T; 31 other;
ucagagugag guaguagauu guauaguugu aggguaguua uuuuacccug uucaggagau 60
aacuauacaa ucuauugccu ucccuga 87
//
ID gga-let-7a-1 standard; RNA; GGA; 90 BP.
XX
AC MI0001234;
XX
DE Gallus gallus let-7a-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777838; MIRLET7A-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0001101"
FT /product="gga-let-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000556"
XX
SQ Sequence 90 BP; 24 A; 15 C; 23 G; 0 T; 28 other;
ugcacugugg gaugagguag uagguuguau aguuuuaggg ucauacccgc aacugggaga 60
uaacuauaca aucuacuguc uuuccuaaag 90
//
ID gga-mir-146a standard; RNA; GGA; 99 BP.
XX
AC MI0001235;
XX
DE Gallus gallus miR-146a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777839; MIR146A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001163"
FT /product="gga-miR-146a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000477"
FT miRNA 58..80
FT /accession="MIMAT0026529"
FT /product="gga-miR-146a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 99 BP; 19 A; 21 C; 22 G; 0 T; 37 other;
guguauccuc agcuuugaga acugaauucc auggguugua auugaauccu uugucagacc 60
cauggggcuc aguucuucag cuuggauauu ucugucuuc 99
//
ID gga-mir-103-1 standard; RNA; GGA; 78 BP.
XX
AC MI0001236;
XX
DE Gallus gallus miR-103-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777840; MIR103-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..33
FT /accession="MIMAT0031070"
FT /product="gga-miR-103-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 48..70
FT /accession="MIMAT0001145"
FT /product="gga-miR-103-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000587"
XX
SQ Sequence 78 BP; 15 A; 18 C; 21 G; 0 T; 24 other;
ugcugccuuc ggcuucuuua cagugcugcc uuguugcaua uggaucaagc agcauuguac 60
agggcuauga aggcacug 78
//
ID gga-mir-218-2 standard; RNA; GGA; 95 BP.
XX
AC MI0001237;
XX
DE Gallus gallus miR-218-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777841; MIR218-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0001144"
FT /product="gga-miR-218-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000295"
FT miRNA 54..75
FT /accession="MIMAT0026518"
FT /product="gga-miR-218-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 95 BP; 24 A; 21 C; 22 G; 0 T; 28 other;
gggguuuucc uuugugcuug aucuaaccau gugguagaac aauacaaauu gaacaugguu 60
cugucaagca ccauggaagg cugcauacuc ccugc 95
//
ID gga-mir-205b standard; RNA; GGA; 98 BP.
XX
AC MI0001238;
XX
DE Gallus gallus miR-205b stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RA McBride D, Carre W, Law A, Clinton M;
RT ";
RL Unpublished.
XX
DR ENTREZGENE; 777842; MIR205B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..47
FT /accession="MIMAT0001164"
FT /product="gga-miR-205b"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000947"
XX
SQ Sequence 98 BP; 28 A; 27 C; 21 G; 0 T; 22 other;
auacacuacu agggccuucc ugaugcccuu cauuccaccg gaaucuguca gugcagaaac 60
cagauuucag ugaaaugaag cccaucagag aggcagcu 98
//
ID gga-mir-130b standard; RNA; GGA; 77 BP.
XX
AC MI0001239;
XX
DE Gallus gallus miR-130b stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777843; MIR130B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0026530"
FT /product="gga-miR-130b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 52..73
FT /accession="MIMAT0001165"
FT /product="gga-miR-130b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000748"
XX
SQ Sequence 77 BP; 14 A; 22 C; 24 G; 0 T; 17 other;
gggcgggcug ccccucuuuc ccuguugcac uacugucacg gucgcagcga gcagugcaau 60
aaugaaaggg cgucagu 77
//
ID gga-mir-301a standard; RNA; GGA; 93 BP.
XX
AC MI0001240;
XX
DE Gallus gallus miR-301 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777844; MIR301.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..40
FT /accession="MIMAT0026531"
FT /product="gga-miR-301a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 57..81
FT /accession="MIMAT0001166"
FT /product="gga-miR-301a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000593"
XX
SQ Sequence 93 BP; 24 A; 20 C; 21 G; 0 T; 28 other;
uggcugcugg uaucgcuggc ucugacaaug uugcacuacu gucugcacaa auaaagcagu 60
gcaauaauau ugucaaagca uuugguucca guc 93
//
ID gga-mir-130a standard; RNA; GGA; 83 BP.
XX
AC MI0001241;
XX
DE Gallus gallus miR-130a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777845; MIR130A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0026532"
FT /product="gga-miR-130a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 52..73
FT /accession="MIMAT0001167"
FT /product="gga-miR-130a-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000448"
XX
SQ Sequence 83 BP; 19 A; 15 C; 22 G; 0 T; 27 other;
ugcuguuguc cagagcccuu uuucuguugu acuacuggca auuaugauga gcagugcaau 60
auuaaaaggg cauuggcugg cag 83
//
ID gga-mir-181b-2 standard; RNA; GGA; 85 BP.
XX
AC MI0001242;
XX
DE Gallus gallus miR-181b-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777846; MIR181B-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001151"
FT /product="gga-miR-181b-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000683"
FT miRNA 55..75
FT /accession="MIMAT0031059"
FT /product="gga-miR-181b-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 85 BP; 23 A; 20 C; 17 G; 0 T; 25 other;
cuaauggcug caaucaacau ucauugcugu cgguggguuu ucauugcuau caacucacug 60
aucaaugaau gcaaacugcg gacca 85
//
ID gga-mir-181a-2 standard; RNA; GGA; 91 BP.
XX
AC MI0001243;
XX
DE Gallus gallus miR-181a-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777847; MIR181A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0001168"
FT /product="gga-miR-181a-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000289"
XX
SQ Sequence 91 BP; 25 A; 19 C; 22 G; 0 T; 25 other;
gccaucuuug gauagcuuca gugaacauuc aacgcugucg gugaguuuga gaacuaagaa 60
aaaccaucga ccguugacug uaccuugagg u 91
//
ID gga-mir-126 standard; RNA; GGA; 84 BP.
XX
AC MI0001244;
XX
DE Gallus gallus miR-126 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
DR ENTREZGENE; 777848; MIR126.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0003723"
FT /product="gga-miR-126-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2]"
FT miRNA 51..73
FT /accession="MIMAT0001169"
FT /product="gga-miR-126-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2]"
FT /similarity="MI0000471"
XX
SQ Sequence 84 BP; 18 A; 20 C; 22 G; 0 T; 24 other;
gcuggugacg gcccauuauu acuuuuggua cgcgcuguga cacuucaaac ucguaccgug 60
aguaauaaug cgcugugguc agca 84
//
ID gga-mir-199-1 standard; RNA; GGA; 94 BP.
XX
AC MI0001245;
XX
DE Gallus gallus miR-199-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
DR ENTREZGENE; 777849; MIR199-1.
XX
CC Chicken has two loci predicted to express miR-199. mir-199-2
CC (MIR:MI0001220) is homologous to mir-199a-2 in human (MIR:MI0000281) and
CC mouse (MIR:MI0000713). mir-199-1 (MIR:MI0001245) is homologous to
CC mir-199b in human (MIR:MI0000282) and mouse (MIR:MI0000714). The
CC expression of chicken miR-199 has been verified experimentally [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0001152"
FT /product="gga-miR-199-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2]"
FT /similarity="MI0000714"
FT miRNA 53..72
FT /accession="MIMAT0003721"
FT /product="gga-miR-199-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2]"
XX
SQ Sequence 94 BP; 19 A; 26 C; 23 G; 0 T; 26 other;
cuccacuccg ucugcccagu guucagacua ccuguucagg acuacgagau uguacaguag 60
ucugcacauu gguuaggcug ugcugggaua cacc 94
//
ID gga-mir-219a standard; RNA; GGA; 85 BP.
XX
AC MI0001246;
XX
DE Gallus gallus miR-219a stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
DR ENTREZGENE; 777850; MIR219.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0001170"
FT /product="gga-miR-219a"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT /similarity="MI0000740"
XX
SQ Sequence 85 BP; 20 A; 21 C; 21 G; 0 T; 23 other;
cucugcuccu gauuguccaa acgcaauucu ugugcgcugg agccguacga accaagaauu 60
gugucuggac aucuguagca gagau 85
//
ID gga-mir-1a-1 standard; RNA; GGA; 71 BP.
XX
AC MI0001247;
XX
DE Gallus gallus miR-1a-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777851; MIR1A-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0031071"
FT /product="gga-miR-1a-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 46..66
FT /accession="MIMAT0001127"
FT /product="gga-miR-1a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000139"
XX
SQ Sequence 71 BP; 24 A; 11 C; 13 G; 0 T; 23 other;
ugagagacau acuucuuuau augcccauau gaaccuggca aucuauggaa uguaaagaag 60
uauguauuuc a 71
//
ID gga-mir-133a-2 standard; RNA; GGA; 96 BP.
XX
AC MI0001248;
XX
DE Gallus gallus miR-133a-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777852; MIR133A-2.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0026509"
FT /product="gga-miR-133a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 61..82
FT /accession="MIMAT0001126"
FT /product="gga-miR-133a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000451"
XX
SQ Sequence 96 BP; 27 A; 20 C; 22 G; 0 T; 27 other;
gugaggccaa augcuuugcu aaagcuggua aaauggaacc aaaucaacug uucaauggau 60
uugguccccu ucaaccagcu guagcugugc auugau 96
//
ID gga-mir-200a standard; RNA; GGA; 87 BP.
XX
AC MI0001249;
XX
DE Gallus gallus miR-200a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777853; MIR200A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0026533"
FT /product="gga-miR-200a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 52..73
FT /accession="MIMAT0001171"
FT /product="gga-miR-200a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000554"
XX
SQ Sequence 87 BP; 19 A; 17 C; 22 G; 0 T; 29 other;
gguccucugu gggcaucuua cuagacagug cuggauuucu uggaucuauu cuaacacugu 60
cugguaacga uguuuaaagg gugaacc 87
//
ID gga-mir-200b standard; RNA; GGA; 85 BP.
XX
AC MI0001250;
XX
DE Gallus gallus miR-200b stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777854; MIR200B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..30
FT /accession="MIMAT0026534"
FT /product="gga-miR-200b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 46..68
FT /accession="MIMAT0001172"
FT /product="gga-miR-200b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000944"
XX
SQ Sequence 85 BP; 15 A; 17 C; 20 G; 0 T; 33 other;
gccauuacca ucuuacuggg cagcauugga uguucucugu uuuucuaaua cugccuggua 60
augaugauug ugguguuucg ugcac 85
//
ID gga-mir-34a standard; RNA; GGA; 109 BP.
XX
AC MI0001251;
XX
DE Gallus gallus miR-34a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777855; MIR34A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..43
FT /accession="MIMAT0001173"
FT /product="gga-miR-34a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000268"
FT miRNA 64..86
FT /accession="MIMAT0026535"
FT /product="gga-miR-34a-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 109 BP; 25 A; 20 C; 31 G; 0 T; 33 other;
gccagcugug aguguuucuu uggcaguguc uuagcugguu guugugagca auaguuaagg 60
aagcaaucag caaguauacu gcccuagaag ugcuacacau uguugggcc 109
//
ID gga-mir-124b standard; RNA; GGA; 93 BP.
XX
AC MI0001252;
XX
DE Gallus gallus miR-124b stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
DR ENTREZGENE; 777856; MIR124B.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..71
FT /accession="MIMAT0001174"
FT /product="gga-miR-124b"
FT /evidence=not_experimental
FT /similarity="MI0000444"
XX
SQ Sequence 93 BP; 21 A; 22 C; 26 G; 0 T; 24 other;
agccccagcg uuuuguguuc acugcagacc uugauuuaau gucacacgau uaaggcacgc 60
agugaaugcc aaaguuuggg gcagccuggg cug 93
//
ID gga-mir-1b standard; RNA; GGA; 64 BP.
XX
AC MI0001254;
XX
DE Gallus gallus miR-1b stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777858; MIR1B.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..23
FT /accession="MIMAT0026536"
FT /product="gga-miR-1b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 42..62
FT /accession="MIMAT0001175"
FT /product="gga-miR-1b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000651"
XX
SQ Sequence 64 BP; 17 A; 12 C; 15 G; 0 T; 20 other;
acauacuucu ucauaugccc auauggaguc ggccggcguu auggaauguu aagaaguaug 60
uauc 64
//
ID gga-mir-133c standard; RNA; GGA; 79 BP.
XX
AC MI0001255;
XX
DE Gallus gallus miR-133c stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777859; MIR133C.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0026537"
FT /product="gga-miR-133c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 49..70
FT /accession="MIMAT0001176"
FT /product="gga-miR-133c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000451"
XX
SQ Sequence 79 BP; 20 A; 21 C; 21 G; 0 T; 17 other;
ugccuuccug gggcugguaa aaaggaacca gaucaacuac aacuggauuu gguccccuuc 60
aaccagcugc aguggggca 79
//
ID gga-mir-30e standard; RNA; GGA; 96 BP.
XX
AC MI0001256;
XX
DE Gallus gallus miR-30e stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777860; MIR30E.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..37
FT /accession="MIMAT0001177"
FT /product="gga-miR-30e-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000749"
FT miRNA 62..82
FT /accession="MIMAT0026538"
FT /product="gga-miR-30e-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 96 BP; 17 A; 22 C; 33 G; 0 T; 24 other;
cggggcaguc aucgcugcug uaaacauccu ugacuggaag cugugaggug ucagcggggg 60
cuuucagucg gauguuuaca gcugcaggcu gcugca 96
//
ID gga-mir-30c-1 standard; RNA; GGA; 89 BP.
XX
AC MI0001257;
XX
DE Gallus gallus miR-30c-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
RN [3]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [4]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777861; MIR30C-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..40
FT /accession="MIMAT0001137"
FT /product="gga-miR-30c-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Northern [2], Illumina [4]"
FT /similarity="MI0000736"
FT miRNA 57..77
FT /accession="MIMAT0031105"
FT /product="gga-miR-30c-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 89 BP; 20 A; 22 C; 24 G; 0 T; 23 other;
accaugcugu agcacgugua aacauccuac acucucagcu gugaacucga gguggcuggg 60
agaggauugu uuacgccuuc ugccaugga 89
//
ID gga-mir-100 standard; RNA; GGA; 80 BP.
XX
AC MI0001258;
XX
DE Gallus gallus miR-100 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777862; MIR100.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0001178"
FT /product="gga-miR-100-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000102"
FT miRNA 49..69
FT /accession="MIMAT0026539"
FT /product="gga-miR-100-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 80 BP; 18 A; 20 C; 17 G; 0 T; 25 other;
ccuguugcca caaacccgua gauccgaacu uguggucaua uuccacacaa gcuuguaucu 60
auagguaugu gucugucugg 80
//
ID gga-let-7a-2 standard; RNA; GGA; 72 BP.
XX
AC MI0001259;
XX
DE Gallus gallus let-7a-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777863; MIRLET7A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0001101"
FT /product="gga-let-7a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000061"
FT miRNA 50..71
FT /accession="MIMAT0031037"
FT /product="gga-let-7a-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 72 BP; 21 A; 12 C; 17 G; 0 T; 22 other;
agguugaggu aguagguugu auaguuuaga auuacaccaa gggagauaac uguacaaccu 60
ccuagcuuuc cu 72
//
ID gga-mir-34b standard; RNA; GGA; 84 BP.
XX
AC MI0001260;
XX
DE Gallus gallus miR-34b stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777864; MIR34B.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0001179"
FT /product="gga-miR-34b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000404"
FT miRNA 51..72
FT /accession="MIMAT0026540"
FT /product="gga-miR-34b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 84 BP; 23 A; 23 C; 18 G; 0 T; 20 other;
gugcuugguu ugcaggcagu guaguuagcu gauuguaccc agcgccccac aaucacuaaa 60
uucacugcca ucaaaacaag gcac 84
//
ID gga-mir-34c standard; RNA; GGA; 74 BP.
XX
AC MI0001261;
XX
DE Gallus gallus miR-34c stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777865; MIR34C.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0001180"
FT /product="gga-miR-34c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000403"
FT miRNA 46..67
FT /accession="MIMAT0026541"
FT /product="gga-miR-34c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 74 BP; 24 A; 20 C; 17 G; 0 T; 13 other;
agccugguua ccaggcagug uaguuagcug auugccacca ggaccaauca cuaaccacac 60
agccagguaa aaag 74
//
ID gga-let-7j standard; RNA; GGA; 83 BP.
XX
AC MI0001262;
XX
DE Gallus gallus let-7j stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777866; MIRLET7J.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..23
FT /accession="MIMAT0001181"
FT /product="gga-let-7j-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000067"
FT miRNA 59..80
FT /accession="MIMAT0026542"
FT /product="gga-let-7j-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 83 BP; 18 A; 12 C; 23 G; 0 T; 30 other;
gugagguagu agguuguaua guuugguggg agggauucug ucccauuuca ggugauaacu 60
auacagucua uugccuuccu uaa 83
//
ID gga-let-7k standard; RNA; GGA; 83 BP.
XX
AC MI0001263;
XX
DE Gallus gallus let-7k stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777867; MIRLET7K.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0001182"
FT /product="gga-let-7k-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000556"
FT miRNA 54..75
FT /accession="MIMAT0026543"
FT /product="gga-let-7k-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 83 BP; 21 A; 16 C; 19 G; 0 T; 27 other;
ggcugaggua guagauugaa uaguugugga guccuauccu cccuuugagc uaacuauaca 60
aucuacuguc uuuccuaagg aga 83
//
ID gga-mir-135a-3 standard; RNA; GGA; 96 BP.
XX
AC MI0001264;
XX
DE Gallus gallus miR-135a-3 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777868; MIR135A-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0001099"
FT /product="gga-miR-135a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000810"
FT miRNA 55..76
FT /accession="MIMAT0031038"
FT /product="gga-miR-135a-3-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 96 BP; 17 A; 23 C; 25 G; 0 T; 31 other;
cccucugcug uggucuaugg cuuuuuauuc cuaugugauu gcuuuuccua acucauguag 60
ggcgaaaagc caugggcuac ucaggggagg gacucc 96
//
ID gga-mir-29c standard; RNA; GGA; 89 BP.
XX
AC MI0001265;
XX
DE Gallus gallus miR-29c stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777869; MIR29C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..38
FT /accession="MIMAT0026544"
FT /product="gga-miR-29c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 55..74
FT /accession="MIMAT0001183"
FT /product="gga-miR-29c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000735"
XX
SQ Sequence 89 BP; 18 A; 18 C; 22 G; 0 T; 31 other;
ucucuuacac aggcugaccg auuucucuug guguucagag ucucaguuuc ugucuagcac 60
cauuugaaau cgguuaugau guaggggga 89
//
ID gga-mir-29b-2 standard; RNA; GGA; 80 BP.
XX
AC MI0001266;
XX
DE Gallus gallus miR-29b-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777870; MIR29B-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..33
FT /accession="MIMAT0031072"
FT /product="gga-miR-29b-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 51..73
FT /accession="MIMAT0001097"
FT /product="gga-miR-29b-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000107"
XX
SQ Sequence 80 BP; 17 A; 17 C; 18 G; 0 T; 28 other;
ccucuggaag cugguuucac augguggcuu agauuuuccc acuuuguauc uagcaccauu 60
ugaaaucagu guucuaggag 80
//
ID gga-mir-205a standard; RNA; GGA; 96 BP.
XX
AC MI0001267;
XX
DE Gallus gallus miR-205a stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
DR ENTREZGENE; 777871; MIR205A.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0001184"
FT /product="gga-miR-205a"
FT /evidence=not_experimental
FT /similarity="MI0000285"
XX
SQ Sequence 96 BP; 25 A; 22 C; 24 G; 0 T; 25 other;
gacaauccau ggguucuguu guccuucauu ccaccggagu cugucucgua ccuaaccaga 60
uuucagugga gugaagcaca agagacaugg agauga 96
//
ID gga-mir-196-1 standard; RNA; GGA; 95 BP.
XX
AC MI0001268;
XX
DE Gallus gallus miR-196-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777872; MIR196-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0001121"
FT /product="gga-miR-196-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000552"
FT miRNA 62..83
FT /accession="MIMAT0031017"
FT /product="gga-miR-196-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 95 BP; 30 A; 16 C; 16 G; 0 T; 33 other;
ugaacuagaa cugcucugug aauuagguag uuucauguug uugggcuuua aauuuuaaac 60
acaagaacau caaacuaccu gauuuacucc aguua 95
//
ID gga-mir-7-3 standard; RNA; GGA; 95 BP.
XX
AC MI0001269;
XX
DE Gallus gallus miR-7-3 stem-loop
XX
RN [1]
RX PUBMED; 18463306.
RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
RA Kellis M, Grutzner F, Stark A, Hannon GJ;
RT "Conservation of small RNA pathways in platypus";
RL Genome Res. 18:995-1004(2008).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777873; MIR7-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0001157"
FT /product="gga-miR-7"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT /similarity="MI0000641"
XX
SQ Sequence 95 BP; 25 A; 17 C; 22 G; 0 T; 31 other;
cuguggucug gcucugugug gaagacuagu gauuuuguug uuaugauuua uaaaggugac 60
aacaaaucau agccugccau acagcacaga ucuuc 95
//
ID gga-mir-101-1 standard; RNA; GGA; 79 BP.
XX
AC MI0001270;
XX
DE Gallus gallus miR-101 stem-loop
XX
RN [1]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [2]
RX PUBMED; 18469162.
RA Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML;
RT "A microRNA catalog of the developing chicken embryo identified by a deep
RT sequencing approach";
RL Genome Res. 18:957-964(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777874; MIR101.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..34
FT /accession="MIMAT0026545"
FT /product="gga-miR-101-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 48..69
FT /accession="MIMAT0001185"
FT /product="gga-miR-101-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2-3]"
FT /similarity="MI0000739"
XX
SQ Sequence 79 BP; 20 A; 12 C; 21 G; 0 T; 26 other;
acuauccuuu uucgguuauc augguaccgg ugcuguauac gugaaaggua caguacugug 60
auaacugaag aaugguggu 79
//
ID gga-mir-204-1 standard; RNA; GGA; 104 BP.
XX
AC MI0001271;
XX
DE Gallus gallus miR-204-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
DR ENTREZGENE; 777875; MIR204-1.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 33..54
FT /accession="MIMAT0001156"
FT /product="gga-miR-204"
FT /evidence=not_experimental
FT /similarity="MI0000284"
XX
SQ Sequence 104 BP; 24 A; 23 C; 29 G; 0 T; 28 other;
gucaacagug ucuguucaug ugacccgugg acuucccuuu gucauccuau gccugagaau 60
auaugaaggg ggcugggaag gcaaagggac guucaacugu cauc 104
//
ID gga-mir-7-1 standard; RNA; GGA; 109 BP.
XX
AC MI0001272;
XX
DE Gallus gallus miR-7-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777876; MIR7-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0001157"
FT /product="gga-miR-7"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000263"
XX
SQ Sequence 109 BP; 30 A; 17 C; 24 G; 0 T; 38 other;
uggauguugg ucuaguucug uguggaagac uagugauuuu guuguuuuua gauaauuaaa 60
uugacaacaa aucacagucu gccauauggc acagaucaug ccucuacag 109
//
ID gga-mir-23b standard; RNA; GGA; 86 BP.
XX
AC MI0001273;
XX
DE Gallus gallus miR-23b stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777877; MIR23B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0026546"
FT /product="gga-miR-23b-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 52..72
FT /accession="MIMAT0001186"
FT /product="gga-miR-23b-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000439"
XX
SQ Sequence 86 BP; 21 A; 15 C; 22 G; 0 T; 28 other;
uguuguggcu guuuggguuc cuggcaugau gauuugugag uuaagauuaa aaucacauug 60
ccagggauua ccacauagcc augacc 86
//
ID gga-mir-27b standard; RNA; GGA; 97 BP.
XX
AC MI0001274;
XX
DE Gallus gallus miR-27b stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777878; MIR27B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0026547"
FT /product="gga-miR-27b-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 61..81
FT /accession="MIMAT0001187"
FT /product="gga-miR-27b-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000440"
XX
SQ Sequence 97 BP; 20 A; 19 C; 28 G; 0 T; 30 other;
accucucugg ugaggugcag agcuuagcug auuggugaac agugauuguu ucccucuuug 60
uucacagugg cuaaguucug caccugaaga gaaggug 97
//
ID gga-mir-24 standard; RNA; GGA; 68 BP.
XX
AC MI0001275;
XX
DE Gallus gallus miR-24 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777879; MIR24.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0026548"
FT /product="gga-miR-24-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 44..65
FT /accession="MIMAT0001188"
FT /product="gga-miR-24-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000080"
XX
SQ Sequence 68 BP; 16 A; 16 C; 17 G; 0 T; 19 other;
cuccggugcc uacugagcug auaucaguuc ugauuuuaca uacuggcuca guucagcagg 60
aacaggag 68
//
ID gga-mir-31 standard; RNA; GGA; 94 BP.
XX
AC MI0001276;
XX
DE Gallus gallus miR-31 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777880; MIR31.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0001189"
FT /product="gga-miR-31-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000579"
FT miRNA 61..83
FT /accession="MIMAT0026549"
FT /product="gga-miR-31-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 94 BP; 23 A; 20 C; 22 G; 0 T; 29 other;
uucuuucaug cagagcugga ggggaggcaa gauguuggca uagcuguuaa ccuaaaaacc 60
ugcuaugcca acauauuguc aucuuuccug ucug 94
//
ID gga-mir-122-1 standard; RNA; GGA; 77 BP.
XX
AC MI0001277;
XX
DE Gallus gallus miR-122-1 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777881; MIR122-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0001190"
FT /product="gga-miR-122-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2], Illumina [3]"
FT /similarity="MI0000442"
FT miRNA 45..66
FT /accession="MIMAT0026550"
FT /product="gga-miR-122-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 77 BP; 22 A; 15 C; 18 G; 0 T; 22 other;
cagagcugug gagugugaca augguguuug uguccaaucu aucaaacgcc auuaucacac 60
uaaauagcua cugguag 77
//
ID gga-mir-183 standard; RNA; GGA; 98 BP.
XX
AC MI0001278;
XX
DE Gallus gallus miR-183 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
DR ENTREZGENE; 777882; MIR183.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0001191"
FT /product="gga-miR-183"
FT /evidence=not_experimental
FT /similarity="MI0000928"
XX
SQ Sequence 98 BP; 28 A; 25 C; 25 G; 0 T; 20 other;
acuccuguuc uguguauggc acugguagaa uucacugugc aaccccgcgg ucagugaauu 60
accauagggc cauaaacaga gcagagaaag acccgcga 98
//
ID gga-mir-7b standard; RNA; GGA; 110 BP.
XX
AC MI0001279;
XX
DE Gallus gallus miR-7b stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RA McBride D, Carre W, Law A, Clinton M;
RT ";
RL Unpublished.
XX
DR ENTREZGENE; 777883; MIR7B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0001192"
FT /product="gga-miR-7b"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000263"
XX
SQ Sequence 110 BP; 32 A; 19 C; 22 G; 0 T; 37 other;
uggacauugg ucuaguucug uguggaagac uagugauuuu uguuguuuuu agauaacuaa 60
auugacaaca aaucacaguc uaccauaugg cacagacuau gccucuacag 110
//
ID gga-mir-122-2 standard; RNA; GGA; 77 BP.
XX
AC MI0001280;
XX
DE Gallus gallus miR-122-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777884; MIR122-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0001190"
FT /product="gga-miR-122-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2], Illumina [3]"
FT /similarity="MI0000442"
FT miRNA 45..66
FT /accession="MIMAT0026550"
FT /product="gga-miR-122-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 77 BP; 23 A; 15 C; 17 G; 0 T; 22 other;
cagagcuaug gagugugaca augguguuug uguccaaucu aucaaacgcc auuaucacac 60
uaaauagcua cugguag 77
//
ID gga-mir-142 standard; RNA; GGA; 88 BP.
XX
AC MI0001281;
XX
DE Gallus gallus miR-142 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RX PUBMED; 16750530.
RA Xu H, Wang X, Du Z, Li N;
RT "Identification of microRNAs from different tissues of chicken embryo and
RT adult chicken";
RL FEBS Lett. 580:3610-3616(2006).
XX
RN [3]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
DR ENTREZGENE; 777885; MIR142.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001193"
FT /product="gga-miR-142-5p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Northern [2]"
FT /similarity="MI0000458"
FT miRNA 53..74
FT /accession="MIMAT0001194"
FT /product="gga-miR-142-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0000458"
XX
SQ Sequence 88 BP; 26 A; 17 C; 22 G; 0 T; 23 other;
gacagugcag ucacccauaa aguagaaagc acuacuaaac agcacugcag gguguagugu 60
uuccuacuuu auggaugagu guacugug 88
//
ID gga-mir-196-3 standard; RNA; GGA; 108 BP.
XX
AC MI0001282;
XX
DE Gallus gallus miR-196-3 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
RN [2]
RA McBride D, Carre W, Law A, Clinton M;
RT ";
RL Unpublished.
XX
DR ENTREZGENE; 777886; MIR196-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0001121"
FT /product="gga-miR-196-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000940"
XX
SQ Sequence 108 BP; 23 A; 19 C; 27 G; 0 T; 39 other;
uuucaugcag cugaucugug guuuagguag uuucauguug uugggauugg cuuuuagcuc 60
ggcaacaaga aacugccuua auuacgucag uuagucuuca ucaagggc 108
//
ID gga-mir-9-2 standard; RNA; GGA; 87 BP.
XX
AC MI0001283;
XX
DE Gallus gallus miR-9-2 stem-loop
XX
RN [1]
RX PUBMED; 15592404.
RA International Chicken Genome Sequencing Consortium;
RT "Sequence and comparative analysis of the chicken genome provide unique
RT perspectives on vertebrate evolution";
RL Nature. 432:695-716(2004).
XX
DR ENTREZGENE; 777887; MIR9-2.
XX
CC This sequence is a predicted homologue of a verified miRNA from human,
CC mouse or rat. Its expression has not been validated in chicken.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0001195"
FT /product="gga-miR-9-5p"
FT /evidence=not_experimental
FT /similarity="MI0000467"
XX
SQ Sequence 87 BP; 25 A; 13 C; 19 G; 0 T; 30 other;
ggaagcgagu uguuaucuuu gguuaucuag cuguaugagu guuuuggucu ucauaaagcu 60
agauaaccga aaguaaaaac uccuuca 87
//
ID dps-bantam standard; RNA; DPS; 81 BP.
XX
AC MI0001287;
XX
DE Drosophila pseudoobscura bantam stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..74
FT /accession="MIMAT0001197"
FT /product="dps-bantam"
FT /evidence=not_experimental
FT /similarity="MI0000387"
FT /similarity="MI0000387"
XX
SQ Sequence 81 BP; 21 A; 10 C; 16 G; 0 T; 34 other;
auuugacuac gaaaccgguu uucgauuugg uuugacuguu uuuuauacaa gugagaucau 60
uuugaaagcu gauuuuguca a 81
//
ID dps-let-7 standard; RNA; DPS; 77 BP.
XX
AC MI0001288;
XX
DE Drosophila pseudoobscura let-7 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001198"
FT /product="dps-let-7"
FT /evidence=not_experimental
FT /similarity="MI0000416"
FT /similarity="MI0000416"
XX
SQ Sequence 77 BP; 19 A; 11 C; 18 G; 0 T; 29 other;
ucuggcaaau ugagguagua gguuguauag uaguacuuca gaucguacua uacaaugugc 60
uagcuuucuu ugcuuga 77
//
ID dps-mir-1 standard; RNA; DPS; 88 BP.
XX
AC MI0001289;
XX
DE Drosophila pseudoobscura miR-1 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0001199"
FT /product="dps-miR-1"
FT /evidence=not_experimental
FT /similarity="MI0000116"
FT /similarity="MI0000116"
XX
SQ Sequence 88 BP; 30 A; 14 C; 20 G; 0 T; 24 other;
gccuuugaga guuccaugcu uccuugcauu caauaguaua acauaaagca uauggaaugu 60
aaagaaguau ggagcgaaau cuggcaag 88
//
ID dps-mir-2a-1 standard; RNA; DPS; 74 BP.
XX
AC MI0001290;
XX
DE Drosophila pseudoobscura miR-2a-1 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 47..69
FT /accession="MIMAT0001200"
FT /product="dps-miR-2a"
FT /evidence=not_experimental
FT /similarity="MI0000117"
FT /similarity="MI0000117"
XX
SQ Sequence 74 BP; 15 A; 18 C; 20 G; 0 T; 21 other;
gcugggcuca caaagugguu gugaaaugca uuuugcuuug cccgcauauc acagccagcu 60
uugaugagcu cggc 74
//
ID dps-mir-2a-2 standard; RNA; DPS; 72 BP.
XX
AC MI0001291;
XX
DE Drosophila pseudoobscura miR-2a-2 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 44..66
FT /accession="MIMAT0001200"
FT /product="dps-miR-2a"
FT /evidence=not_experimental
FT /similarity="MI0000118"
FT /similarity="MI0000118"
XX
SQ Sequence 72 BP; 21 A; 16 C; 16 G; 0 T; 19 other;
aucuaagccu caucaagugg uugugauaug gauacccaac gcauaucaca gccagcuuug 60
augagcuagg au 72
//
ID dps-mir-2b-1 standard; RNA; DPS; 77 BP.
XX
AC MI0001292;
XX
DE Drosophila pseudoobscura miR-2b-1 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 48..70
FT /accession="MIMAT0001201"
FT /product="dps-miR-2b"
FT /evidence=not_experimental
FT /similarity="MI0000119"
FT /similarity="MI0000119"
XX
SQ Sequence 77 BP; 17 A; 15 C; 23 G; 0 T; 22 other;
cugcgacgcu cuuuaaagug gcggugacgu guugguaaua auauucauau cacagccagc 60
uuugaggagc guugcgg 77
//
ID dps-mir-2b-2 standard; RNA; DPS; 83 BP.
XX
AC MI0001293;
XX
DE Drosophila pseudoobscura miR-2b-2 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..76
FT /accession="MIMAT0001201"
FT /product="dps-miR-2b"
FT /evidence=not_experimental
FT /similarity="MI0000120"
FT /similarity="MI0000120"
XX
SQ Sequence 83 BP; 19 A; 16 C; 18 G; 0 T; 30 other;
uugugucauu cuucaaagug guugugaaau guuugccuuu uuaugccuau ucauaucaca 60
gccagcuuug aggagcgaca cga 83
//
ID dps-mir-2c standard; RNA; DPS; 103 BP.
XX
AC MI0001294;
XX
DE Drosophila pseudoobscura miR-2c stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 64..86
FT /accession="MIMAT0001202"
FT /product="dps-miR-2c"
FT /evidence=not_experimental
FT /similarity="MI0000431"
FT /similarity="MI0000431"
XX
SQ Sequence 103 BP; 31 A; 18 C; 23 G; 0 T; 31 other;
ugguauccuu acuuucagug ucaucaaaaa uggcugaaga aagauauauu ugcauuugaa 60
gcguaucaca gccagcuuug augggcauug caaugagcau cga 103
//
ID dps-mir-3 standard; RNA; DPS; 73 BP.
XX
AC MI0001295;
XX
DE Drosophila pseudoobscura miR-3 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 48..69
FT /accession="MIMAT0001203"
FT /product="dps-miR-3"
FT /evidence=not_experimental
FT /similarity="MI0000121"
FT /similarity="MI0000121"
XX
SQ Sequence 73 BP; 15 A; 15 C; 19 G; 0 T; 24 other;
gauccuggga ugcauuuugu gcaguuaugu cuacgugauc auccucauca cugggcaaag 60
ugugucucag gau 73
//
ID dps-mir-4 standard; RNA; DPS; 81 BP.
XX
AC MI0001296;
XX
DE Drosophila pseudoobscura miR-4 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..69
FT /accession="MIMAT0001204"
FT /product="dps-miR-4"
FT /evidence=not_experimental
FT /similarity="MI0000122"
FT /similarity="MI0000122"
XX
SQ Sequence 81 BP; 18 A; 15 C; 18 G; 0 T; 30 other;
uugcaauuag uuucuuuggu cguccagccu uaggugauuu cucugaucau aaagcuagac 60
aaccauugaa guucguugug g 81
//
ID dps-mir-iab-4 standard; RNA; DPS; 68 BP.
XX
AC MI0001297;
XX
DE Drosophila pseudoobscura miR-iab-4 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0001205"
FT /product="dps-miR-iab-4-5p"
FT /evidence=not_experimental
FT /similarity="MI0000432"
FT /similarity="MI0000432"
FT miRNA 41..64
FT /accession="MIMAT0001206"
FT /product="dps-miR-iab-4-3p"
FT /evidence=not_experimental
FT /similarity="MI0000432"
FT /similarity="MI0000432"
XX
SQ Sequence 68 BP; 19 A; 15 C; 12 G; 0 T; 22 other;
ucguauacgu auacugaaug uauccugagu guauccuauc cgguauaccu ucaguauacg 60
uaacacga 68
//
ID dps-mir-5 standard; RNA; DPS; 72 BP.
XX
AC MI0001298;
XX
DE Drosophila pseudoobscura miR-5 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..27
FT /accession="MIMAT0001207"
FT /product="dps-miR-5"
FT /evidence=not_experimental
FT /similarity="MI0000123"
FT /similarity="MI0000123"
XX
SQ Sequence 72 BP; 20 A; 14 C; 14 G; 0 T; 24 other;
gcuaaaagga acgaucguug ugauaugcgu uaauucaccg uuacauauca cagugauuuu 60
ccuuuauagc gc 72
//
ID dps-mir-6-1 standard; RNA; DPS; 80 BP.
XX
AC MI0001299;
XX
DE Drosophila pseudoobscura miR-6-1 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..71
FT /accession="MIMAT0001208"
FT /product="dps-miR-6"
FT /evidence=not_experimental
FT /similarity="MI0000124"
FT /similarity="MI0000124"
XX
SQ Sequence 80 BP; 20 A; 13 C; 16 G; 0 T; 31 other;
uuugaaguag agagaauagu ugcugugcua uauguccuuc gacucuauau aucacagugg 60
cuguucuuuu uguaccuaaa 80
//
ID dps-mir-6-3 standard; RNA; DPS; 80 BP.
XX
AC MI0001300;
XX
DE Drosophila pseudoobscura miR-6-3 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0001208"
FT /product="dps-miR-6"
FT /evidence=not_experimental
FT /similarity="MI0000125"
FT /similarity="MI0000126"
XX
SQ Sequence 80 BP; 20 A; 11 C; 19 G; 0 T; 30 other;
caaaaagaag ggaacgguug cugcugaugu aguucaaguu uugcacaauu uauaucacag 60
uggcuguucu uuuuuguuug 80
//
ID dps-mir-6-2 standard; RNA; DPS; 83 BP.
XX
AC MI0001301;
XX
DE Drosophila pseudoobscura miR-6-2 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 58..79
FT /accession="MIMAT0001208"
FT /product="dps-miR-6"
FT /evidence=not_experimental
FT /similarity="MI0000126"
FT /similarity="MI0000126"
XX
SQ Sequence 83 BP; 17 A; 22 C; 15 G; 0 T; 29 other;
ccaaccgcag ggaaccgcug cugcugauau auuauccacc caucuuugac auuucuauau 60
cacaguggcu guucuuuuug guu 83
//
ID dps-mir-7 standard; RNA; DPS; 88 BP.
XX
AC MI0001302;
XX
DE Drosophila pseudoobscura miR-7 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0001209"
FT /product="dps-miR-7"
FT /evidence=not_experimental
FT /similarity="MI0000127"
FT /similarity="MI0000127"
XX
SQ Sequence 88 BP; 19 A; 16 C; 19 G; 0 T; 34 other;
gaguguauuc cguauggaag acuagugauu uuguuguuug gucucugcua auaacaauaa 60
aucccuuguc uucuuacggc gugcaucu 88
//
ID dps-mir-8 standard; RNA; DPS; 87 BP.
XX
AC MI0001303;
XX
DE Drosophila pseudoobscura miR-8 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..75
FT /accession="MIMAT0001210"
FT /product="dps-miR-8"
FT /evidence=not_experimental
FT /similarity="MI0000128"
FT /similarity="MI0000128"
XX
SQ Sequence 87 BP; 22 A; 21 C; 17 G; 0 T; 27 other;
aaggacaucu guucacaucu uaccgggcag cauuagaucc uuuagauacc ucuaauacug 60
ucagguaaag augucguccg uguccuu 87
//
ID dps-mir-9a standard; RNA; DPS; 78 BP.
XX
AC MI0001304;
XX
DE Drosophila pseudoobscura miR-9a stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..32
FT /accession="MIMAT0001211"
FT /product="dps-miR-9a"
FT /evidence=not_experimental
FT /similarity="MI0000129"
FT /similarity="MI0000129"
XX
SQ Sequence 78 BP; 23 A; 11 C; 16 G; 0 T; 28 other;
gcuauguugu cuuugguuau cuagcuguau gagugauaaa uaacgucaua aagcuagcuu 60
accgaaguua auauuagc 78
//
ID dps-mir-9b standard; RNA; DPS; 91 BP.
XX
AC MI0001305;
XX
DE Drosophila pseudoobscura miR-9b stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0001212"
FT /product="dps-miR-9b"
FT /evidence=not_experimental
FT /similarity="MI0000415"
FT /similarity="MI0000415"
XX
SQ Sequence 91 BP; 26 A; 15 C; 16 G; 0 T; 34 other;
ugcacauuau uugaucuuug gugauuuuag cuguauggug uauaucaaag auccauagag 60
cuuuaucacc aaaacccaaa ugguuuuugc a 91
//
ID dps-mir-9c standard; RNA; DPS; 92 BP.
XX
AC MI0001306;
XX
DE Drosophila pseudoobscura miR-9c stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0001213"
FT /product="dps-miR-9c"
FT /evidence=not_experimental
FT /similarity="MI0000413"
FT /similarity="MI0000413"
XX
SQ Sequence 92 BP; 22 A; 15 C; 13 G; 0 T; 42 other;
auuuuugcug uuucuuuggu auucuagcug uagauuguuu uuugcacauu guauaucauc 60
uaaagcuuuu auaccaaagc uccagcuuaa au 92
//
ID dps-mir-10 standard; RNA; DPS; 77 BP.
XX
AC MI0001307;
XX
DE Drosophila pseudoobscura miR-10 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0001214"
FT /product="dps-miR-10"
FT /evidence=not_experimental
FT /similarity="MI0000130"
FT /similarity="MI0000130"
XX
SQ Sequence 77 BP; 18 A; 14 C; 18 G; 0 T; 27 other;
ccacgucuac ccuguagauc cgaauuuguu uuacauuagc uuuaaggaca aauucgguuc 60
uagagagguu ugugugg 77
//
ID dps-mir-11 standard; RNA; DPS; 71 BP.
XX
AC MI0001308;
XX
DE Drosophila pseudoobscura miR-11 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 45..65
FT /accession="MIMAT0001215"
FT /product="dps-miR-11"
FT /evidence=not_experimental
FT /similarity="MI0000131"
FT /similarity="MI0000131"
XX
SQ Sequence 71 BP; 15 A; 18 C; 15 G; 0 T; 23 other;
cucuugucaa gaacuuauuc ugugaccugc gugacauuua gccacaucac agucugaguu 60
cuugcugagc g 71
//
ID dps-mir-12 standard; RNA; DPS; 74 BP.
XX
AC MI0001309;
XX
DE Drosophila pseudoobscura miR-12 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0001216"
FT /product="dps-miR-12"
FT /evidence=not_experimental
FT /similarity="MI0000132"
FT /similarity="MI0000132"
XX
SQ Sequence 74 BP; 20 A; 16 C; 15 G; 0 T; 23 other;
uacggcugag uauuacauca gguacuggug ugcuuuaaau ccaacaacca guacuuaugu 60
uauacuacgc cgug 74
//
ID dps-mir-13a standard; RNA; DPS; 74 BP.
XX
AC MI0001310;
XX
DE Drosophila pseudoobscura miR-13a stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 47..68
FT /accession="MIMAT0001217"
FT /product="dps-miR-13a"
FT /evidence=not_experimental
FT /similarity="MI0000133"
FT /similarity="MI0000133"
XX
SQ Sequence 74 BP; 22 A; 14 C; 13 G; 0 T; 25 other;
uacguaaccc aucaaacggu ugugaaaugu ugcauuuauc aaaucauauc acagccauuu 60
ugaugaguuu cgug 74
//
ID dps-mir-13b-1 standard; RNA; DPS; 69 BP.
XX
AC MI0001311;
XX
DE Drosophila pseudoobscura miR-13b-1 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 44..65
FT /accession="MIMAT0001218"
FT /product="dps-miR-13b"
FT /evidence=not_experimental
FT /similarity="MI0000134"
FT /similarity="MI0000134"
XX
SQ Sequence 69 BP; 17 A; 13 C; 13 G; 0 T; 26 other;
ccaugucguu aaaauguuug ugaccuuaug uacucuugaa ucauaucaca gccauuuuga 60
cgaguuugg 69
//
ID dps-mir-13b-2 standard; RNA; DPS; 69 BP.
XX
AC MI0001312;
XX
DE Drosophila pseudoobscura miR-13b-2 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 45..66
FT /accession="MIMAT0001218"
FT /product="dps-miR-13b"
FT /evidence=not_experimental
FT /similarity="MI0000135"
FT /similarity="MI0000135"
XX
SQ Sequence 69 BP; 17 A; 12 C; 14 G; 0 T; 26 other;
auuuacgcgu caaaaugacu gugagcuaug uguuuuugau cucauaucac agccauuuug 60
acgaguuug 69
//
ID dps-mir-14 standard; RNA; DPS; 63 BP.
XX
AC MI0001313;
XX
DE Drosophila pseudoobscura miR-14 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 41..61
FT /accession="MIMAT0001219"
FT /product="dps-miR-14"
FT /evidence=not_experimental
FT /similarity="MI0000136"
FT /similarity="MI0000136"
XX
SQ Sequence 63 BP; 11 A; 13 C; 17 G; 0 T; 22 other;
ugugggagcg agacggggac ucacugugcu uuugaaguag ucagucuuuu ucucucuccu 60
aua 63
//
ID dps-mir-31a standard; RNA; DPS; 92 BP.
XX
AC MI0001314;
XX
DE Drosophila pseudoobscura miR-31a stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0001220"
FT /product="dps-miR-31a"
FT /evidence=not_experimental
FT /similarity="MI0000420"
FT /similarity="MI0000420"
XX
SQ Sequence 92 BP; 26 A; 14 C; 24 G; 0 T; 28 other;
ucuguuggua aauuggcaag augucggcau agcugaaguu gaaaagcgau cuuugagaac 60
gcuaugcugc aucuagucag uuauucaaug ga 92
//
ID dps-mir-31b standard; RNA; DPS; 89 BP.
XX
AC MI0001315;
XX
DE Drosophila pseudoobscura miR-31b stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..27
FT /accession="MIMAT0001221"
FT /product="dps-miR-31b"
FT /evidence=not_experimental
FT /similarity="MI0000420"
FT /similarity="MI0000420"
XX
SQ Sequence 89 BP; 30 A; 13 C; 21 G; 0 T; 25 other;
aauuuggcaa gaugucggaa uagcugagag caaaaagaag augauuugaa augcggcuau 60
gccucaucua gucaauugca uucauuuga 89
//
ID dps-mir-33 standard; RNA; DPS; 91 BP.
XX
AC MI0001316;
XX
DE Drosophila pseudoobscura miR-33 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0001222"
FT /product="dps-miR-33"
FT /evidence=not_experimental
FT /similarity="MI0000364"
FT /similarity="MI0000364"
XX
SQ Sequence 91 BP; 22 A; 22 C; 21 G; 0 T; 26 other;
ccggagauga cacgcaggug cauuguaguc gcauugucug uccaucuuga uuucaggcaa 60
uacaacugca augcaagcuc ugugcauuuc a 91
//
ID dps-mir-34 standard; RNA; DPS; 100 BP.
XX
AC MI0001317;
XX
DE Drosophila pseudoobscura miR-34 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0001223"
FT /product="dps-miR-34"
FT /evidence=not_experimental
FT /similarity="MI0000371"
FT /similarity="MI0000371"
XX
SQ Sequence 100 BP; 21 A; 26 C; 24 G; 0 T; 29 other;
aauuggcuau gcgcuuuggc agugugguua gcugguugug uagccaaaau auugccuuug 60
accauucaca gccacuaucu ucacugccgc cgcgacaagc 100
//
ID dps-mir-79 standard; RNA; DPS; 84 BP.
XX
AC MI0001318;
XX
DE Drosophila pseudoobscura miR-79 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 55..76
FT /accession="MIMAT0001224"
FT /product="dps-miR-79"
FT /evidence=not_experimental
FT /similarity="MI0000374"
FT /similarity="MI0000374"
XX
SQ Sequence 84 BP; 21 A; 17 C; 16 G; 0 T; 30 other;
cugcucugcu ucugcuuugg cgcuuuagcu guaugauaga uuuaaaauac uucauaaagc 60
uagauuacca aagcauuggc ucug 84
//
ID dps-mir-87 standard; RNA; DPS; 98 BP.
XX
AC MI0001319;
XX
DE Drosophila pseudoobscura miR-87 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 60..80
FT /accession="MIMAT0001225"
FT /product="dps-miR-87"
FT /evidence=not_experimental
FT /similarity="MI0000382"
FT /similarity="MI0000382"
XX
SQ Sequence 98 BP; 24 A; 20 C; 21 G; 0 T; 33 other;
cauauuucau ucgcgccugu aucuugcuga accguagcca uaauggucuu ucaucccggu 60
ugagcaaaau uucaggugug ugagaaauuu guuaagca 98
//
ID dps-mir-92a standard; RNA; DPS; 94 BP.
XX
AC MI0001320;
XX
DE Drosophila pseudoobscura miR-92a stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..75
FT /accession="MIMAT0001226"
FT /product="dps-miR-92a"
FT /evidence=not_experimental
FT /similarity="MI0000357"
FT /similarity="MI0000357"
XX
SQ Sequence 94 BP; 25 A; 20 C; 24 G; 0 T; 25 other;
auagagauug cccguaggac gggaaggugu caacguuuua aauuuugaac aaacauugca 60
cuugucccgg ccuaugggcg gcuugucaua caca 94
//
ID dps-mir-92b standard; RNA; DPS; 100 BP.
XX
AC MI0001321;
XX
DE Drosophila pseudoobscura miR-92b stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 60..81
FT /accession="MIMAT0001227"
FT /product="dps-miR-92b"
FT /evidence=not_experimental
FT /similarity="MI0000379"
FT /similarity="MI0000379"
XX
SQ Sequence 100 BP; 26 A; 25 C; 23 G; 0 T; 26 other;
uaaaacguca ccugauguag gccgugccca gugcuuauuu gucguuguuu gaaaauacaa 60
auugcacuag ucccggccug cagagagugu cgcacacaac 100
//
ID dps-mir-100 standard; RNA; DPS; 100 BP.
XX
AC MI0001322;
XX
DE Drosophila pseudoobscura miR-100 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0001228"
FT /product="dps-miR-100"
FT /evidence=not_experimental
FT /similarity="MI0000378"
FT /similarity="MI0000378"
XX
SQ Sequence 100 BP; 28 A; 21 C; 20 G; 0 T; 31 other;
ccauuaacag aaacccguaa uuccgaacuu gugcuguuuu auaucuguua caagaccggc 60
auuaugggag ucugucaaug caaacaacug guuuuuggca 100
//
ID dps-mir-124 standard; RNA; DPS; 98 BP.
XX
AC MI0001323;
XX
DE Drosophila pseudoobscura miR-124 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..79
FT /accession="MIMAT0001229"
FT /product="dps-miR-124"
FT /evidence=not_experimental
FT /similarity="MI0000373"
FT /similarity="MI0000373"
XX
SQ Sequence 98 BP; 23 A; 23 C; 23 G; 0 T; 29 other;
ucguuuggua cguuuuucuc cugguaucca cuguaggccu auauguauuu cgaccauaag 60
gcacgcggug aaugccaaga gcggacgaaa cucuacua 98
//
ID dps-mir-125 standard; RNA; DPS; 110 BP.
XX
AC MI0001324;
XX
DE Drosophila pseudoobscura miR-125 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..50
FT /accession="MIMAT0001230"
FT /product="dps-miR-125"
FT /evidence=not_experimental
FT /similarity="MI0000417"
FT /similarity="MI0000417"
XX
SQ Sequence 110 BP; 26 A; 22 C; 23 G; 0 T; 39 other;
gacaugugca aauguuugua uggcugauuc ccugagaccc uaacuuguga cuuuuaauac 60
caguuucaca aguuuugauc uccgguauug gacgcaaacu ugcugauguu 110
//
ID dps-mir-133 standard; RNA; DPS; 96 BP.
XX
AC MI0001325;
XX
DE Drosophila pseudoobscura miR-133 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..77
FT /accession="MIMAT0001231"
FT /product="dps-miR-133"
FT /evidence=not_experimental
FT /similarity="MI0000362"
FT /similarity="MI0000362"
XX
SQ Sequence 96 BP; 22 A; 21 C; 21 G; 0 T; 32 other;
uacaacggcu guauguagcu gguugacauc gggucagauc uauuuuauca aguauuuggu 60
ccccuucaac cagcuguauc agugguugau uccaac 96
//
ID dps-mir-184 standard; RNA; DPS; 100 BP.
XX
AC MI0001326;
XX
DE Drosophila pseudoobscura miR-184 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..82
FT /accession="MIMAT0001232"
FT /product="dps-miR-184"
FT /evidence=not_experimental
FT /similarity="MI0000354"
FT /similarity="MI0000354"
XX
SQ Sequence 100 BP; 25 A; 29 C; 23 G; 0 T; 23 other;
ggucgaccgg ugcauucgua cccuuaucau ucucgcgccc cgugugcauu aaaagacaac 60
uggacggaga acugauaagg gcucguauca ccaacucauc 100
//
ID dps-mir-210a standard; RNA; DPS; 94 BP.
XX
AC MI0001327;
XX
DE Drosophila pseudoobscura miR-210a stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..70
FT /accession="MIMAT0001233"
FT /product="dps-miR-210a"
FT /evidence=not_experimental
FT /similarity="MI0000376"
XX
SQ Sequence 94 BP; 24 A; 19 C; 24 G; 0 T; 27 other;
gguacuuauu gcagcugcug gccacugcac aagauuagau uuaagacucu ugugcgugug 60
acagcggcua uuguaagagg ccauauuagc auca 94
//
ID dps-mir-219 standard; RNA; DPS; 100 BP.
XX
AC MI0001328;
XX
DE Drosophila pseudoobscura miR-219 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0001234"
FT /product="dps-miR-219"
FT /evidence=not_experimental
FT /similarity="MI0000358"
FT /similarity="MI0000358"
XX
SQ Sequence 100 BP; 31 A; 19 C; 19 G; 0 T; 31 other;
uaauucgauu uuuagcuaug auuguccaaa cgcaauucuu guugauaucc aauacucaag 60
gguugugacu ggacaucgcg gcucgaaaua agaauacaac 100
//
ID dps-mir-263a standard; RNA; DPS; 92 BP.
XX
AC MI0001329;
XX
DE Drosophila pseudoobscura miR-263a stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..37
FT /accession="MIMAT0001235"
FT /product="dps-miR-263a"
FT /evidence=not_experimental
FT /similarity="MI0000343"
FT /similarity="MI0000343"
XX
SQ Sequence 92 BP; 23 A; 22 C; 23 G; 0 T; 24 other;
acaucccggc acaguuaaug gcacuggaag aauucacggg guuuuucaau acaacccgug 60
aucucuuagu ggcaucuaug gugcgggacu ca 92
//
ID dps-mir-263b standard; RNA; DPS; 91 BP.
XX
AC MI0001330;
XX
DE Drosophila pseudoobscura miR-263b stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0001236"
FT /product="dps-miR-263b"
FT /evidence=not_experimental
FT /similarity="MI0000383"
FT /similarity="MI0000383"
XX
SQ Sequence 91 BP; 16 A; 18 C; 26 G; 0 T; 31 other;
uugcuggcau uggcucuugg cacugggaga auucacaguu gguuuccaua uauucugugg 60
uucugcgggu gccaaaaucg aauguucggc u 91
//
ID dps-mir-274 standard; RNA; DPS; 97 BP.
XX
AC MI0001331;
XX
DE Drosophila pseudoobscura miR-274 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..44
FT /accession="MIMAT0001237"
FT /product="dps-miR-274"
FT /evidence=not_experimental
FT /similarity="MI0000355"
FT /similarity="MI0000355"
XX
SQ Sequence 97 BP; 23 A; 24 C; 23 G; 0 T; 27 other;
ucccgugcug caguuucauu uugugaccga cacuaacggg uaauggcugg ccgcaggacu 60
acucguuuuu gcgaucacaa uacugaaauu gcagcaa 97
//
ID dps-mir-275 standard; RNA; DPS; 90 BP.
XX
AC MI0001332;
XX
DE Drosophila pseudoobscura miR-275 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..78
FT /accession="MIMAT0001238"
FT /product="dps-miR-275"
FT /evidence=not_experimental
FT /similarity="MI0000356"
FT /similarity="MI0000356"
XX
SQ Sequence 90 BP; 20 A; 23 C; 26 G; 0 T; 21 other;
aaagucuccu accaugcgcg cuaaucagag accggggcug guuuuuucac ugcagucagg 60
uaccugaagu agcgcgcgug gugcuagaca 90
//
ID dps-mir-276a standard; RNA; DPS; 99 BP.
XX
AC MI0001333;
XX
DE Drosophila pseudoobscura miR-276a stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..77
FT /accession="MIMAT0001239"
FT /product="dps-miR-276a"
FT /evidence=not_experimental
FT /similarity="MI0000359"
FT /similarity="MI0000359"
XX
SQ Sequence 99 BP; 30 A; 22 C; 20 G; 0 T; 27 other;
ccugguuuuu gccaucagcg agguauagag uuccuacguu cauauuauaa acucguagga 60
acuucauacc gugcucuugg aagaccaaaa gacaacgaa 99
//
ID dps-mir-276b standard; RNA; DPS; 99 BP.
XX
AC MI0001334;
XX
DE Drosophila pseudoobscura miR-276b stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 62..83
FT /accession="MIMAT0001240"
FT /product="dps-miR-276b"
FT /evidence=not_experimental
FT /similarity="MI0000375"
FT /similarity="MI0000375"
XX
SQ Sequence 99 BP; 25 A; 25 C; 24 G; 0 T; 25 other;
aaagcgaagc cucuuuacca ucagcgaggu auagaguucc uacgugccgu auccaaaguc 60
guaggaacuu aauaccgugc ucuuggaggg cuguccauc 99
//
ID dps-mir-277 standard; RNA; DPS; 100 BP.
XX
AC MI0001335;
XX
DE Drosophila pseudoobscura miR-277 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 59..81
FT /accession="MIMAT0001241"
FT /product="dps-miR-277"
FT /evidence=not_experimental
FT /similarity="MI0000360"
FT /similarity="MI0000360"
XX
SQ Sequence 100 BP; 26 A; 18 C; 24 G; 0 T; 32 other;
uugaagguuu uggguugcgu gucaggagug cauuugcacu gaaacauucu gaagcuugua 60
aaugcacuau cugguacgac auuccagaac guacaaucuu 100
//
ID dps-mir-278 standard; RNA; DPS; 98 BP.
XX
AC MI0001336;
XX
DE Drosophila pseudoobscura miR-278 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..78
FT /accession="MIMAT0001242"
FT /product="dps-miR-278"
FT /evidence=not_experimental
FT /similarity="MI0000361"
FT /similarity="MI0000361"
XX
SQ Sequence 98 BP; 19 A; 23 C; 29 G; 0 T; 27 other;
guaaugguac ggugcgaccg gacgaugguu cacaacgacc gugucucuua aacuggucgg 60
ugggacuuuc guccguuugu aacgccauuu gucagcga 98
//
ID dps-mir-279 standard; RNA; DPS; 95 BP.
XX
AC MI0001337;
XX
DE Drosophila pseudoobscura miR-279 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 62..83
FT /accession="MIMAT0001243"
FT /product="dps-miR-279"
FT /evidence=not_experimental
FT /similarity="MI0000363"
FT /similarity="MI0000363"
XX
SQ Sequence 95 BP; 23 A; 16 C; 18 G; 0 T; 38 other;
ucauacuacu guuuuuagug agugaggguc caguguuuca cauugauuuu cuuaguauuu 60
gugacuagau ccacacucau uaauaacggu aguuc 95
//
ID dps-mir-280 standard; RNA; DPS; 94 BP.
XX
AC MI0001338;
XX
DE Drosophila pseudoobscura miR-280 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..35
FT /accession="MIMAT0001244"
FT /product="dps-miR-280"
FT /evidence=not_experimental
FT /similarity="MI0000365"
FT /similarity="MI0000365"
XX
SQ Sequence 94 BP; 27 A; 11 C; 20 G; 0 T; 36 other;
ggcuuuuaug uauuuacguu gcauaugaaa ugauauuuau aguaaacaga uuauuuuaua 60
ugcagguaug ugcagcugaa gagccugucc auug 94
//
ID dps-mir-281-1 standard; RNA; DPS; 88 BP.
XX
AC MI0001339;
XX
DE Drosophila pseudoobscura miR-281-1 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..78
FT /accession="MIMAT0001245"
FT /product="dps-miR-281"
FT /evidence=not_experimental
FT /similarity="MI0000366"
FT /similarity="MI0000366"
XX
SQ Sequence 88 BP; 27 A; 16 C; 18 G; 0 T; 27 other;
cgaauaggug aauaaagaga gcuguccguc gacagucaac guaccaauuu aauacuguca 60
uggaauugcu cucuuuguau aauauucg 88
//
ID dps-mir-281-2 standard; RNA; DPS; 91 BP.
XX
AC MI0001340;
XX
DE Drosophila pseudoobscura miR-281-2 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 59..81
FT /accession="MIMAT0001245"
FT /product="dps-miR-281"
FT /evidence=not_experimental
FT /similarity="MI0000370"
FT /similarity="MI0000370"
XX
SQ Sequence 91 BP; 30 A; 14 C; 18 G; 0 T; 29 other;
cgaauaguga aauaaagaga gcuauccguc gacagucaag uuaaucagau uguaauacug 60
ucauggaauu gcucucuuug uauaauauuc g 91
//
ID dps-mir-282 standard; RNA; DPS; 94 BP.
XX
AC MI0001341;
XX
DE Drosophila pseudoobscura miR-282 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..37
FT /accession="MIMAT0001246"
FT /product="dps-miR-282"
FT /evidence=not_experimental
FT /similarity="MI0000367"
FT /similarity="MI0000367"
XX
SQ Sequence 94 BP; 29 A; 19 C; 20 G; 0 T; 26 other;
ugccuuauaa aucuagccuc uacuaggcuu ugucugugca uuugaaaacc cgaucagaca 60
uagccuauaa gagguuaggu guaccaagga agaa 94
//
ID dps-mir-283 standard; RNA; DPS; 97 BP.
XX
AC MI0001342;
XX
DE Drosophila pseudoobscura miR-283 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..38
FT /accession="MIMAT0001247"
FT /product="dps-miR-283"
FT /evidence=not_experimental
FT /similarity="MI0000368"
FT /similarity="MI0000368"
XX
SQ Sequence 97 BP; 30 A; 16 C; 20 G; 0 T; 31 other;
cucacgauuc ucaaagguaa auaucagcug guaauucugg gagcuaagca agauaugaaa 60
cacucggaau uucaguuggu aucgacuuuu uugaauu 97
//
ID dps-mir-284 standard; RNA; DPS; 100 BP.
XX
AC MI0001343;
XX
DE Drosophila pseudoobscura miR-284 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 64..92
FT /accession="MIMAT0001248"
FT /product="dps-miR-284"
FT /evidence=not_experimental
FT /similarity="MI0000369"
FT /similarity="MI0000369"
XX
SQ Sequence 100 BP; 24 A; 22 C; 28 G; 0 T; 26 other;
guugcaguuc cuggaauuaa guugacugug uagccuggga aggcaaggcu ugagcacugc 60
uucugaaguc agcaacuuga uuccagcaau ugcggcccaa 100
//
ID dps-mir-285 standard; RNA; DPS; 100 BP.
XX
AC MI0001344;
XX
DE Drosophila pseudoobscura miR-285 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 65..86
FT /accession="MIMAT0001249"
FT /product="dps-miR-285"
FT /evidence=not_experimental
FT /similarity="MI0000377"
FT /similarity="MI0000377"
XX
SQ Sequence 100 BP; 32 A; 20 C; 21 G; 0 T; 27 other;
ucgaaucgaa gaacugagau cgauuggugc auagauauca agaggacucg cuaauuuuca 60
acucuagcac cauucgaaau cagugcuuuu gaugagaacc 100
//
ID dps-mir-286 standard; RNA; DPS; 97 BP.
XX
AC MI0001345;
XX
DE Drosophila pseudoobscura miR-286 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 62..84
FT /accession="MIMAT0001250"
FT /product="dps-miR-286"
FT /evidence=not_experimental
FT /similarity="MI0000380"
FT /similarity="MI0000380"
XX
SQ Sequence 97 BP; 27 A; 17 C; 22 G; 0 T; 31 other;
uuaaaauuaa auggcgauug ucgguuuggu cgcuuuuuac caggguuccg aucaagcgaa 60
gugacuagac cgaacacucg ugcuauaauu uuagaau 97
//
ID dps-mir-287 standard; RNA; DPS; 80 BP.
XX
AC MI0001346;
XX
DE Drosophila pseudoobscura miR-287 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..72
FT /accession="MIMAT0001251"
FT /product="dps-miR-287"
FT /evidence=not_experimental
FT /similarity="MI0000381"
FT /similarity="MI0000381"
XX
SQ Sequence 80 BP; 24 A; 10 C; 19 G; 0 T; 27 other;
augugugagu guggggccug aaauuuugca cacauuuaca auaauuguaa auguguugaa 60
aaucguuugc acaacuguga 80
//
ID dps-mir-288 standard; RNA; DPS; 96 BP.
XX
AC MI0001347;
XX
DE Drosophila pseudoobscura miR-288 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 65..87
FT /accession="MIMAT0001252"
FT /product="dps-miR-288"
FT /evidence=not_experimental
FT /similarity="MI0000384"
FT /similarity="MI0000384"
XX
SQ Sequence 96 BP; 20 A; 20 C; 27 G; 0 T; 29 other;
ggccaugucg uaauuagcag gguacagcgu ugccggcgau aauuaaugac guuggucacg 60
uugguuucau gucgauuuca uuucaugaca cggccg 96
//
ID dps-mir-289 standard; RNA; DPS; 100 BP.
XX
AC MI0001348;
XX
DE Drosophila pseudoobscura miR-289 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..41
FT /accession="MIMAT0001253"
FT /product="dps-miR-289"
FT /evidence=not_experimental
FT /similarity="MI0000385"
FT /similarity="MI0000385"
XX
SQ Sequence 100 BP; 27 A; 21 C; 26 G; 0 T; 26 other;
gaguuuacag ugaaauaaau auuuaagugg agccugcgac ugggacucca gcucuccgac 60
ugggcuaacu cacuugagcg uuuguuggca cguaaaagac 100
//
ID dps-mir-304 standard; RNA; DPS; 88 BP.
XX
AC MI0001349;
XX
DE Drosophila pseudoobscura miR-304 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..34
FT /accession="MIMAT0001254"
FT /product="dps-miR-304"
FT /evidence=not_experimental
FT /similarity="MI0000411"
FT /similarity="MI0000411"
XX
SQ Sequence 88 BP; 26 A; 17 C; 19 G; 0 T; 26 other;
gcagcauuga auaaucucaa uuuguaaaug ugagcgauuu gaggcauuug acacacucac 60
uuugcaacug gagauugcuc gaaacugc 88
//
ID dps-mir-305 standard; RNA; DPS; 73 BP.
XX
AC MI0001350;
XX
DE Drosophila pseudoobscura miR-305 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0001255"
FT /product="dps-miR-305"
FT /evidence=not_experimental
FT /similarity="MI0000412"
FT /similarity="MI0000412"
XX
SQ Sequence 73 BP; 16 A; 17 C; 16 G; 0 T; 24 other;
caugucuauu guacuucauc aggugcucug guguguccug uaacccggca cauguugaag 60
uacacucaau aug 73
//
ID dps-mir-306 standard; RNA; DPS; 80 BP.
XX
AC MI0001351;
XX
DE Drosophila pseudoobscura miR-306 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0001256"
FT /product="dps-miR-306"
FT /evidence=not_experimental
FT /similarity="MI0000414"
FT /similarity="MI0000414"
XX
SQ Sequence 80 BP; 12 A; 22 C; 21 G; 0 T; 25 other;
cacuuugccg gcucagguac uuagugacuc ucaaugcuuu cgacaucuug agagucucuc 60
ugugccugca cuggcggugg 80
//
ID dps-mir-307a standard; RNA; DPS; 88 BP.
XX
AC MI0001352;
XX
DE Drosophila pseudoobscura miR-307a stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..75
FT /accession="MIMAT0001257"
FT /product="dps-miR-307a"
FT /evidence=not_experimental
FT /similarity="MI0000418"
XX
SQ Sequence 88 BP; 20 A; 19 C; 20 G; 0 T; 29 other;
ugucuugcuu ugacucacuc aaccugggug ugauguuauu ucgauauggu auccaucaca 60
accuccuuga gugagcgaua gcaggaua 88
//
ID dps-mir-308 standard; RNA; DPS; 62 BP.
XX
AC MI0001353;
XX
DE Drosophila pseudoobscura miR-308 stem-loop
XX
RN [1]
RX PUBMED; 20037610.
RA Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC;
RT "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila";
RL Nat Genet. 42:6-9(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 41..62
FT /accession="MIMAT0001258"
FT /product="dps-miR-308"
FT /evidence=experimental
FT /experiment="Illumina [1]"
FT /similarity="MI0000419"
FT /similarity="MI0000419"
XX
SQ Sequence 62 BP; 15 A; 9 C; 14 G; 0 T; 24 other;
cucgcaguau auuuuugugu uuuguugugu cugaaacgca aaucacagga uuauacugug 60
ag 62
//
ID dps-mir-309 standard; RNA; DPS; 68 BP.
XX
AC MI0001354;
XX
DE Drosophila pseudoobscura miR-309 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 43..64
FT /accession="MIMAT0001259"
FT /product="dps-miR-309"
FT /evidence=not_experimental
FT /similarity="MI0000421"
FT /similarity="MI0000421"
XX
SQ Sequence 68 BP; 17 A; 11 C; 13 G; 0 T; 27 other;
auuauacgau aaacuuuguu caguuuugcc aacuugcuug cagcacuggg ugaaguuugu 60
cuuauaau 68
//
ID dps-mir-314 standard; RNA; DPS; 89 BP.
XX
AC MI0001355;
XX
DE Drosophila pseudoobscura miR-314 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 69..89
FT /accession="MIMAT0001260"
FT /product="dps-miR-314"
FT /evidence=not_experimental
FT /similarity="MI0000426"
FT /similarity="MI0000426"
XX
SQ Sequence 89 BP; 22 A; 16 C; 22 G; 0 T; 29 other;
ucguaacuug uguggcuucg aauguaccua guugaggaaa acuccgaaau ggauuuuguu 60
accucuggua uucgagccaa uaaguucgg 89
//
ID dps-mir-315 standard; RNA; DPS; 84 BP.
XX
AC MI0001356;
XX
DE Drosophila pseudoobscura miR-315 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0001261"
FT /product="dps-miR-315"
FT /evidence=not_experimental
FT /similarity="MI0000427"
FT /similarity="MI0000427"
XX
SQ Sequence 84 BP; 26 A; 16 C; 13 G; 0 T; 29 other;
cacuuaucua uuuuugauug uugcucagaa agcccuuaua auuaaccagu uggcuuucga 60
gcaauuauca aagccaaaua agug 84
//
ID dps-mir-316 standard; RNA; DPS; 89 BP.
XX
AC MI0001357;
XX
DE Drosophila pseudoobscura miR-316 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001262"
FT /product="dps-miR-316"
FT /evidence=not_experimental
FT /similarity="MI0000428"
FT /similarity="MI0000428"
XX
SQ Sequence 89 BP; 24 A; 14 C; 19 G; 0 T; 32 other;
aaauucuagu cgauuugucu uuuuccgcuu acuggcguuu uauucgauca acgacaggaa 60
agggaaaaag gcguauuuac uaugaguuu 89
//
ID dps-mir-317 standard; RNA; DPS; 90 BP.
XX
AC MI0001358;
XX
DE Drosophila pseudoobscura miR-317 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 55..78
FT /accession="MIMAT0001263"
FT /product="dps-miR-317"
FT /evidence=not_experimental
FT /similarity="MI0000429"
FT /similarity="MI0000429"
XX
SQ Sequence 90 BP; 20 A; 22 C; 25 G; 0 T; 23 other;
ugcaacugcc guugggauac acccugugcu cgcuuugaau auggugcaag caagugaaca 60
cagcuggugg uauccaaugg ccguucugca 90
//
ID dps-mir-318 standard; RNA; DPS; 68 BP.
XX
AC MI0001359;
XX
DE Drosophila pseudoobscura miR-318 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 43..64
FT /accession="MIMAT0001264"
FT /product="dps-miR-318"
FT /evidence=not_experimental
FT /similarity="MI0000430"
FT /similarity="MI0000430"
XX
SQ Sequence 68 BP; 15 A; 13 C; 14 G; 0 T; 26 other;
uuuaugggau gcaccaaguu caguuuuguc acauuucgag caucacuggg cuuuguuuau 60
cucauaag 68
//
ID dre-mir-7b standard; RNA; DRE; 104 BP.
XX
AC MI0001360;
XX
DE Danio rerio miR-7b stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
DR ENTREZGENE; 100628633; mir7b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0001265"
FT /product="dre-miR-7b"
FT /evidence=experimental
FT /experiment="PCR [1]"
XX
SQ Sequence 104 BP; 24 A; 22 C; 27 G; 0 T; 31 other;
ugaacgcugg cuugcuucug uguggaagac uugugauuuu guuguuguua guuagaugaa 60
gugacaacaa aucacggucu gcccuacagc acaggcccag cauc 104
//
ID dre-mir-7a-1 standard; RNA; DRE; 79 BP.
XX
AC MI0001361;
XX
DE Danio rerio miR-7a-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
DR ENTREZGENE; 100628886; mir7a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..25
FT /accession="MIMAT0001266"
FT /product="dre-miR-7a"
FT /evidence=experimental
FT /experiment="PCR [1]"
XX
SQ Sequence 79 BP; 15 A; 18 C; 19 G; 0 T; 27 other;
uguggaagac uagugauuuu guuguuguuu cuucugcuuu cugacaacaa gucacagucu 60
accucagcga gcgggcccu 79
//
ID dre-mir-7a-2 standard; RNA; DRE; 97 BP.
XX
AC MI0001362;
XX
DE Danio rerio miR-7a-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
DR ENTREZGENE; 100628810; mir7a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0001266"
FT /product="dre-miR-7a"
FT /evidence=experimental
FT /experiment="PCR [1]"
XX
SQ Sequence 97 BP; 24 A; 21 C; 22 G; 0 T; 30 other;
uuuugggcau uauggaagac uagugauuuu guuguuguga cgucaucagu acugacaaca 60
agucacaguc ugccucagug accagaaucc acucguc 97
//
ID dre-mir-10a standard; RNA; DRE; 99 BP.
XX
AC MI0001363;
XX
DE Danio rerio miR-10a stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628634; mir10a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0001267"
FT /product="dre-miR-10a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT miRNA 55..76
FT /accession="MIMAT0003391"
FT /product="dre-miR-10a-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 99 BP; 29 A; 18 C; 20 G; 0 T; 32 other;
ugucugucau cuauauauac ccuguagauc cgaauuugug ugaauauaca gucgcaaauu 60
cgugucuugg ggaauaugua guugacauaa acacaacgc 99
//
ID dre-mir-10b-1 standard; RNA; DRE; 78 BP.
XX
AC MI0001364;
XX
DE Danio rerio miR-10b-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
RN [3]
RX PUBMED; 16736008.
RA Woltering JM, Durston AJ;
RT "The zebrafish hoxDb cluster has been reduced to a single microRNA";
RL Nat Genet. 38:601-602(2006).
XX
DR ENTREZGENE; 100628848; mir10b-1.
XX
CC The miR-10b sequence described in [1] is offset by 2 nt with respect to
CC that cloned in mouse (MIR:MI0000221).
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..32
FT /accession="MIMAT0001268"
FT /product="dre-miR-10b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT miRNA 49..70
FT /accession="MIMAT0031919"
FT /product="dre-miR-10b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 78 BP; 26 A; 12 C; 16 G; 0 T; 24 other;
gucuauauau acccuguaga accgaauuug ugugaaaaaa uaacauucac agauucgauu 60
cuaggggagu auaugguc 78
//
ID dre-mir-34a standard; RNA; DRE; 98 BP.
XX
AC MI0001365;
XX
DE Danio rerio miR-34 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628635; mir34.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0001269"
FT /product="dre-miR-34a"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 98 BP; 21 A; 20 C; 29 G; 0 T; 28 other;
cugcugugag ugguucucug gcagugucuu agcugguugu uguguggagu gagaacgaag 60
caaucagcaa guauacugcc gcagaaacuc gucaccuu 98
//
ID dre-mir-181b-1 standard; RNA; DRE; 109 BP.
XX
AC MI0001366;
XX
DE Danio rerio miR-181b-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628636; mir181b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 37..58
FT /accession="MIMAT0001270"
FT /product="dre-miR-181b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 109 BP; 28 A; 24 C; 22 G; 0 T; 35 other;
cauguacgca ccuucaguuc uucaaagguc auaaucaaca uucauugcug ucgguggguu 60
uagucuugua acagcucucu gaacaaugaa uguaacugug gcccagauu 109
//
ID dre-mir-181b-2 standard; RNA; DRE; 86 BP.
XX
AC MI0001367;
XX
DE Danio rerio miR-181b-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033761; mirn181b-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001270"
FT /product="dre-miR-181b-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT miRNA 54..75
FT /accession="MIMAT0031920"
FT /product="dre-miR-181b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 86 BP; 28 A; 18 C; 17 G; 0 T; 23 other;
cuaaugacug caauaaacau ucauugcugu cgguggguuu cuaauagaca caacucacug 60
aucaaugaau gcaaacugcg gugcaa 86
//
ID dre-mir-182 standard; RNA; DRE; 68 BP.
XX
AC MI0001368;
XX
DE Danio rerio miR-182 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628887; mir182.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0001271"
FT /product="dre-miR-182-5p"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2]"
FT miRNA 48..68
FT /accession="MIMAT0001272"
FT /product="dre-miR-182-3p"
FT /evidence=experimental
FT /experiment="PCR [1]"
XX
SQ Sequence 68 BP; 17 A; 13 C; 19 G; 0 T; 19 other;
guauuuggca augguagaac ucacacuggu gagguaguca gauccggugg uucuagacuu 60
gccaacua 68
//
ID dre-mir-183 standard; RNA; DRE; 98 BP.
XX
AC MI0001369;
XX
DE Danio rerio miR-183 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628811; mir183.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0001273"
FT /product="dre-miR-183-5p"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2]"
FT miRNA 56..76
FT /accession="MIMAT0031921"
FT /product="dre-miR-183-3p"
FT /evidence=not_experimental
XX
SQ Sequence 98 BP; 34 A; 21 C; 23 G; 0 T; 20 other;
gacuccuguu cuguguaugg cacugguaga auucacugug aaagcacacu aucagugaau 60
uaccaaaggg ccauaaacag agcagagaaa gaaccacg 98
//
ID dre-mir-187 standard; RNA; DRE; 89 BP.
XX
AC MI0001370;
XX
DE Danio rerio miR-187 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628637; mir187.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..80
FT /accession="MIMAT0001274"
FT /product="dre-miR-187"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2]"
XX
SQ Sequence 89 BP; 14 A; 25 C; 30 G; 0 T; 20 other;
ugaccugugg cugggccagg ggcugcaaca caggacaugg gagcugucuc ucacucccgc 60
ucgugucuug uguugcagcc aguggaacg 89
//
ID dre-mir-192 standard; RNA; DRE; 85 BP.
XX
AC MI0001371;
XX
DE Danio rerio miR-192 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628638; mir192.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0001275"
FT /product="dre-miR-192"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2]"
XX
SQ Sequence 85 BP; 17 A; 22 C; 23 G; 0 T; 23 other;
cuaggacaca gggugaugac cuaugaauug acagccagug uuugcagucc agcugccugu 60
caguucugua ggccacugcc cuguu 85
//
ID dre-mir-196a-1 standard; RNA; DRE; 106 BP.
XX
AC MI0001372;
XX
DE Danio rerio miR-196a-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628639; mir196a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0001276"
FT /product="dre-miR-196a-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 106 BP; 18 A; 23 C; 32 G; 0 T; 33 other;
cgcgcggcug gugcgugguu uagguaguuu cauguuguug ggauuggcuu ccuggcucga 60
caacaagaaa cugccuugau uacgucaguu cgucuucauc aagggc 106
//
ID dre-mir-199-1 standard; RNA; DRE; 87 BP.
XX
AC MI0001373;
XX
DE Danio rerio miR-199-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
RN [3]
RX PUBMED; 15919954.
RA Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de
RA Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH;
RT "MicroRNA expression in zebrafish embryonic development";
RL Science. 309:310-311(2005).
XX
DR ENTREZGENE; 100628962; mir199-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0001277"
FT /product="dre-miR-199-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT miRNA 53..74
FT /accession="MIMAT0003155"
FT /product="dre-miR-199-3p"
FT /evidence=experimental
FT /experiment="array [3], in-situ [3]"
XX
SQ Sequence 87 BP; 17 A; 22 C; 21 G; 0 T; 27 other;
uccugcuccg ucaucccagu guucagacua ccuguucagg aucauacugg uguacaguag 60
ucugcacauu gguuagacug ugcaugg 87
//
ID dre-mir-199-2 standard; RNA; DRE; 96 BP.
XX
AC MI0001374;
XX
DE Danio rerio miR-199-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
RN [3]
RX PUBMED; 15919954.
RA Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de
RA Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH;
RT "MicroRNA expression in zebrafish embryonic development";
RL Science. 309:310-311(2005).
XX
DR ENTREZGENE; 100628888; mir199-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..52
FT /accession="MIMAT0001277"
FT /product="dre-miR-199-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT miRNA 68..89
FT /accession="MIMAT0003155"
FT /product="dre-miR-199-3p"
FT /evidence=experimental
FT /experiment="array [3], in-situ [3]"
XX
SQ Sequence 96 BP; 16 A; 22 C; 28 G; 0 T; 30 other;
ggaguuuuug uggacgcccg ucccgccugc ccaguguuca gacuaccugu ucaggaauua 60
guguuuguac aguagucugc acauugguua ggcugg 96
//
ID dre-mir-199-3 standard; RNA; DRE; 98 BP.
XX
AC MI0001375;
XX
DE Danio rerio miR-199-3 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628812; mir199-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0001277"
FT /product="dre-miR-199-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT miRNA 55..75
FT /accession="MIMAT0031922"
FT /product="dre-miR-199-3-3p"
FT /evidence=not_experimental
XX
SQ Sequence 98 BP; 19 A; 34 C; 23 G; 0 T; 22 other;
ccucccccuc gccugcccag uguucagacu accuguucau caugcugcag cugaacagua 60
guccgcacau ugguuaggcu gggcugggac acacacac 98
//
ID dre-mir-203a standard; RNA; DRE; 96 BP.
XX
AC MI0001376;
XX
DE Danio rerio miR-203a stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628640; mir203a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 32..55
FT /accession="MIMAT0031923"
FT /product="dre-miR-203a-5p"
FT /evidence=not_experimental
FT miRNA 70..91
FT /accession="MIMAT0001278"
FT /product="dre-miR-203a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 96 BP; 20 A; 20 C; 22 G; 0 T; 34 other;
guguuugggu cucuucuggu cccucuggug cagugguucu uaacaguuca acaguucuau 60
cucaaaauug ugaaauguuu aggaccacuu gaccag 96
//
ID dre-mir-204-1 standard; RNA; DRE; 93 BP.
XX
AC MI0001377;
XX
DE Danio rerio miR-204-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628641; mir204-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0001279"
FT /product="dre-miR-204-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT miRNA 54..75
FT /accession="MIMAT0031924"
FT /product="dre-miR-204-3p"
FT /evidence=not_experimental
XX
SQ Sequence 93 BP; 19 A; 22 C; 28 G; 0 T; 24 other;
ucaugugacc uguggacuuc ccuuugucau ccuaugccug gaguaauaga gggggcuggg 60
aagucaaagg gacgcucagg cgucaucauu cgc 93
//
ID dre-mir-205 standard; RNA; DRE; 89 BP.
XX
AC MI0001378;
XX
DE Danio rerio miR-205 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628642; mir205.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0001280"
FT /product="dre-miR-205-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT miRNA 57..78
FT /accession="MIMAT0031925"
FT /product="dre-miR-205-3p"
FT /evidence=not_experimental
XX
SQ Sequence 89 BP; 23 A; 17 C; 21 G; 0 T; 28 other;
aaacuacugu gcauucuauc cuucauucca ccggagucug uguaguuguu caaucagauu 60
ucaguggugu gaaguguagg aaacacgga 89
//
ID dre-mir-210 standard; RNA; DRE; 73 BP.
XX
AC MI0001379;
XX
DE Danio rerio miR-210 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [3]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628889; mir210.
XX
CC Lim et al. cloned this miRNA from D. rerio [1]. The 3' end of the mature
CC sequence was not determined, but was later analysed in a study of many
CC clones in mouse [2]. The most common cloned length is shown here.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0003392"
FT /product="dre-miR-210-5p"
FT /evidence=experimental
FT /experiment="cloned [3]"
FT miRNA 48..69
FT /accession="MIMAT0001281"
FT /product="dre-miR-210-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3]"
XX
SQ Sequence 73 BP; 17 A; 24 C; 17 G; 0 T; 15 other;
gcagguaagc cacugacuaa cgcacauugc gccuauucuc cacuccacug ugcgugugac 60
agcggcuaac cag 73
//
ID dre-mir-181a-1 standard; RNA; DRE; 84 BP.
XX
AC MI0001380;
XX
DE Danio rerio miR-181a-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
DR ENTREZGENE; 100628849; mir181a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0001623"
FT /product="dre-miR-181a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000289"
FT miRNA 56..77
FT /accession="MIMAT0001282"
FT /product="dre-miR-181a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 84 BP; 22 A; 19 C; 21 G; 0 T; 22 other;
guuugccuca gugaacauuc aacgcugucg gugaguuuga gcuaaaugga aaaaaaccau 60
cgaccguuga uuguacccug cggc 84
//
ID dre-mir-214 standard; RNA; DRE; 100 BP.
XX
AC MI0001381;
XX
DE Danio rerio miR-214 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628883; mir214.
XX
FH Key Location/Qualifiers
FH
FT miRNA 62..82
FT /accession="MIMAT0001283"
FT /product="dre-miR-214"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 100 BP; 21 A; 30 C; 27 G; 0 T; 22 other;
ugacugagag cguugucugu cugccugucu acacuugcug ugcagaacuu ccugcaccug 60
uacagcaggc acagacaggc agacagaugg cagcccgccu 100
//
ID dre-mir-216a standard; RNA; DRE; 89 BP.
XX
AC MI0001382;
XX
DE Danio rerio miR-216a stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628643; mir216a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0001284"
FT /product="dre-miR-216a"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2]"
XX
SQ Sequence 89 BP; 17 A; 23 C; 22 G; 0 T; 27 other;
gcugauuuuu ggcauaaucu cagcuggcaa cugugaguag uguuuucauc ccucucacag 60
gcgcugcugg gguucuguca cacacagca 89
//
ID dre-mir-217 standard; RNA; DRE; 98 BP.
XX
AC MI0001383;
XX
DE Danio rerio miR-217 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628644; mir217-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0001285"
FT /product="dre-miR-217"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 98 BP; 28 A; 20 C; 23 G; 0 T; 27 other;
augagaacuu ucugauguug gugauacugc aucaggaacu gauuggauga uauucaggag 60
ccaucaguuc cugaugcacu cccaucagca ucgaaaga 98
//
ID dre-mir-219-1 standard; RNA; DRE; 91 BP.
XX
AC MI0001384;
XX
DE Danio rerio miR-219-1 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628890; mir219-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0001286"
FT /product="dre-miR-219-5p"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2]"
XX
SQ Sequence 91 BP; 28 A; 17 C; 19 G; 0 T; 27 other;
agggucccag agauugauug uccaaacgca auucuuguaa cauauaauau aaauccaaga 60
auugugccug gacaucuguu gcuggagauu c 91
//
ID dre-mir-219-2 standard; RNA; DRE; 80 BP.
XX
AC MI0001385;
XX
DE Danio rerio miR-219-2 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628645; mir219-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..22
FT /accession="MIMAT0001286"
FT /product="dre-miR-219-5p"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2]"
XX
SQ Sequence 80 BP; 18 A; 17 C; 22 G; 0 T; 23 other;
ugauugucca aacgcaauuc uugugaaaug ucgagcgauc agucgagaau ugugccugga 60
caucuguugc uggaggcucc 80
//
ID dre-mir-221 standard; RNA; DRE; 93 BP.
XX
AC MI0001387;
XX
DE Danio rerio miR-221 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033780; mir221.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..33
FT /accession="MIMAT0031926"
FT /product="dre-miR-221-5p"
FT /evidence=not_experimental
FT miRNA 48..70
FT /accession="MIMAT0001288"
FT /product="dre-miR-221-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 93 BP; 21 A; 20 C; 22 G; 0 T; 30 other;
gucgugaacc uggcauacaa uguagauuuc ugugugguac uaucuacagc uacauugucu 60
gcuggguuuc aggccagcag aauaauucug cuc 93
//
ID dre-mir-222a standard; RNA; DRE; 108 BP.
XX
AC MI0001388;
XX
DE Danio rerio miR-222 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033781; mir222.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..52
FT /accession="MIMAT0031927"
FT /product="dre-miR-222a-5p"
FT /evidence=not_experimental
FT miRNA 68..91
FT /accession="MIMAT0001289"
FT /product="dre-miR-222a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 108 BP; 18 A; 25 C; 31 G; 0 T; 34 other;
gccgguggcu uguucgggug cucaugagau gcucaguagu caguguagau ccugugucac 60
aaucagcagc uacaucuggc uacugggucu cugauggcau uuucugcu 108
//
ID dre-mir-223 standard; RNA; DRE; 99 BP.
XX
AC MI0001389;
XX
DE Danio rerio miR-223 stem-loop
XX
RN [1]
RX PUBMED; 12624257.
RA Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP;
RT "Vertebrate microRNA genes";
RL Science. 299:1540(2003).
XX
DR ENTREZGENE; 100628647; mir223.
XX
FH Key Location/Qualifiers
FH
FT miRNA 71..91
FT /accession="MIMAT0001290"
FT /product="dre-miR-223"
FT /evidence=experimental
FT /experiment="PCR [1]"
XX
SQ Sequence 99 BP; 24 A; 23 C; 22 G; 0 T; 30 other;
cucuccuccu gaucuagacu cuucucuuag aguauuugac agacuguggu ugacacucga 60
ucuaaagggg ugucaguuug ucaaauaccc caagagagg 99
//
ID cbr-mir-64a standard; RNA; CBR; 110 BP.
XX
AC MI0001392;
XX
DE Caenorhabditis briggsae miR-64 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae. The mature sequence
CC differs from the elegans sequence at 3 positions.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..47
FT /accession="MIMAT0001292"
FT /product="cbr-miR-64a"
FT /evidence=not_experimental
FT /similarity="MI0000035"
XX
SQ Sequence 110 BP; 23 A; 31 C; 31 G; 0 T; 25 other;
ucaagaaucc ucggccucgc cgaccaugac acugaagcgu guacggaugg aaaguugaag 60
ccuuccguuc cgcuagugug ccaugcaacg gcgagugccu uggcacuuug 110
//
ID cbr-mir-231 standard; RNA; CBR; 104 BP.
XX
AC MI0001394;
XX
DE Caenorhabditis briggsae miR-231 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae. The mature sequence
CC differs from the elegans sequence at 2 positions.
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..79
FT /accession="MIMAT0001293"
FT /product="cbr-miR-231"
FT /evidence=not_experimental
FT /similarity="MI0000306"
XX
SQ Sequence 104 BP; 26 A; 19 C; 22 G; 0 T; 37 other;
cuagcaccuc aauguuguuc ugucuguuuc cauagcuuau auuguaaggu acuuauaagc 60
ucgugaacaa caggcaggac aacuggaagu gguguuuuuu uuca 104
//
ID cbr-mir-356 standard; RNA; CBR; 112 BP.
XX
AC MI0001395;
XX
DE Caenorhabditis briggsae miR-356 stem-loop
XX
RN [1]
RX PUBMED; 15317971.
RA Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB;
RT "Patterns of flanking sequence conservation and a characteristic upstream
RT motif for microRNA gene identification";
RL RNA. 10:1309-1322(2004).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae. The mature sequence
CC differs from the elegans sequence at the two terminal positions.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..40
FT /accession="MIMAT0001294"
FT /product="cbr-miR-356"
FT /evidence=not_experimental
FT /similarity="MI0000755"
XX
SQ Sequence 112 BP; 34 A; 33 C; 25 G; 0 T; 20 other;
ccucauccaa ccaaugugga ugagcaacgc gaacaaaucc ucuuauaaga gauuugccac 60
gccgccgcuc accacacugg cuuucagaag gugccaggaa ucagaagacg ag 112
//
ID cbr-mir-83 standard; RNA; CBR; 111 BP.
XX
AC MI0001396;
XX
DE Caenorhabditis briggsae miR-83 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae. The mature sequence
CC differs from the elegans sequence at 2 positions at the 3' end.
XX
FH Key Location/Qualifiers
FH
FT miRNA 66..87
FT /accession="MIMAT0001295"
FT /product="cbr-miR-83"
FT /evidence=not_experimental
FT /similarity="MI0000054"
XX
SQ Sequence 111 BP; 35 A; 22 C; 27 G; 0 T; 27 other;
gcagaaggca ccacucgaaa aaacugaguu uaugugugua cuugacggcg aucagagcaa 60
cgaucuagca ccauauaaau ucaguguuuu cguggacaga gagccaaguu u 111
//
ID cbr-mir-246 standard; RNA; CBR; 109 BP.
XX
AC MI0001397;
XX
DE Caenorhabditis briggsae miR-246 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae. The mature sequence
CC differs from the elegans sequence at 2 positions.
XX
FH Key Location/Qualifiers
FH
FT miRNA 65..86
FT /accession="MIMAT0001296"
FT /product="cbr-miR-246"
FT /evidence=not_experimental
FT /similarity="MI0000322"
XX
SQ Sequence 109 BP; 38 A; 14 C; 25 G; 0 T; 32 other;
gaaaaguccu agugauaaaa cagcaccugg ccaauauuau guaauaucag aagcaaauug 60
auuauuacau guauugggua ggagcuguuc aagcuauggu uaaaugggu 109
//
ID cbr-mir-51 standard; RNA; CBR; 145 BP.
XX
AC MI0001398;
XX
DE Caenorhabditis briggsae miR-51 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae. The mature sequence
CC differs from the elegans sequence at 2 positions.
XX
FH Key Location/Qualifiers
FH
FT miRNA 44..66
FT /accession="MIMAT0001297"
FT /product="cbr-miR-51"
FT /evidence=not_experimental
FT /similarity="MI0000022"
XX
SQ Sequence 145 BP; 39 A; 31 C; 38 G; 0 T; 37 other;
cgucaucgaa ucucaacguc aaacggaucc gaagacgucc aucuacccgu agcuccuugc 60
cauguuacug guaaaaguga acauggaagu ugguccgggu acauggccag uaggaguuau 120
gaagacgugu ugagguuuca agauu 145
//
ID cbr-mir-357-1 standard; RNA; CBR; 113 BP.
XX
AC MI0001400;
XX
DE Caenorhabditis briggsae miR-357-1 stem-loop
XX
RN [1]
RX PUBMED; 15317971.
RA Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB;
RT "Patterns of flanking sequence conservation and a characteristic upstream
RT motif for microRNA gene identification";
RL RNA. 10:1309-1322(2004).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae. The mature sequence
CC differs from the elegans sequence at 4 positions.
XX
FH Key Location/Qualifiers
FH
FT miRNA 67..87
FT /accession="MIMAT0001298"
FT /product="cbr-miR-357"
FT /evidence=not_experimental
FT /similarity="MI0000756"
XX
SQ Sequence 113 BP; 38 A; 26 C; 23 G; 0 T; 26 other;
cuacaucaga agagacagcg aaucccggca aucaccgugc auuuucaucu accagaggca 60
cuaaugaaaa ugccagucau ugacggaauu cguugaaucu ggaauuaaag cau 113
//
ID cbr-mir-253 standard; RNA; CBR; 110 BP.
XX
AC MI0001401;
XX
DE Caenorhabditis briggsae miR-253 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae. The mature sequence
CC differs from the elegans sequence at 2 positions.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..49
FT /accession="MIMAT0001299"
FT /product="cbr-miR-253"
FT /evidence=not_experimental
FT /similarity="MI0000329"
XX
SQ Sequence 110 BP; 30 A; 23 C; 24 G; 0 T; 33 other;
aacauuuuuc gaguuucagu ccuucucaca caccucacua acacuaacua cagauuucua 60
gauguuagua ggcguugugg gaagggcgga gaugacgaau acuuugugca 110
//
ID cbr-mir-70 standard; RNA; CBR; 112 BP.
XX
AC MI0001402;
XX
DE Caenorhabditis briggsae miR-70 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae. The mature sequence
CC differs from the elegans sequence at 4 positions.
XX
FH Key Location/Qualifiers
FH
FT miRNA 58..80
FT /accession="MIMAT0001300"
FT /product="cbr-miR-70"
FT /evidence=not_experimental
FT /similarity="MI0000041"
XX
SQ Sequence 112 BP; 33 A; 21 C; 19 G; 0 T; 39 other;
aaaacggaug uaucucuagg aacagccauc auguaagaca uuucuaacug aaagauguaa 60
uacgugauug guguucccag aguuuaccgu uuccuucuuu uauuuuucca aa 112
//
ID cbr-mir-358 standard; RNA; CBR; 113 BP.
XX
AC MI0001403;
XX
DE Caenorhabditis briggsae miR-358 stem-loop
XX
RN [1]
RX PUBMED; 15317971.
RA Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB;
RT "Patterns of flanking sequence conservation and a characteristic upstream
RT motif for microRNA gene identification";
RL RNA. 10:1309-1322(2004).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae. The mature sequence
CC differs from the elegans sequence at 4 positions.
XX
FH Key Location/Qualifiers
FH
FT miRNA 63..84
FT /accession="MIMAT0001301"
FT /product="cbr-miR-358"
FT /evidence=not_experimental
FT /similarity="MI0000757"
XX
SQ Sequence 113 BP; 25 A; 30 C; 23 G; 0 T; 35 other;
acuccccauu cggauugaua cccgacuucc ggauaccaaa ugucauaucc aacucguuuc 60
gucaauuggu auccuuaguc guggucucaa ucuguacacg gcgagagugu ugu 113
//
ID cbr-mir-61 standard; RNA; CBR; 107 BP.
XX
AC MI0001404;
XX
DE Caenorhabditis briggsae miR-61 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae. The mature sequence
CC differs from the elegans sequence at 4 positions.
XX
FH Key Location/Qualifiers
FH
FT miRNA 58..80
FT /accession="MIMAT0001302"
FT /product="cbr-miR-61"
FT /evidence=not_experimental
FT /similarity="MI0000032"
XX
SQ Sequence 107 BP; 21 A; 28 C; 26 G; 0 T; 32 other;
uacuugaucg gugucucgag ccgaguuaag gcuaauaguc cuuccggugu augguaauga 60
cuagaaccuu gacucugcuc gaguuacuga gcucuuugac cccgccc 107
//
ID cbr-mir-360 standard; RNA; CBR; 111 BP.
XX
AC MI0001405;
XX
DE Caenorhabditis briggsae miR-360 stem-loop
XX
RN [1]
RX PUBMED; 15317971.
RA Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB;
RT "Patterns of flanking sequence conservation and a characteristic upstream
RT motif for microRNA gene identification";
RL RNA. 10:1309-1322(2004).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 63..83
FT /accession="MIMAT0001303"
FT /product="cbr-miR-360"
FT /evidence=not_experimental
FT /similarity="MI0000759"
XX
SQ Sequence 111 BP; 31 A; 24 C; 22 G; 0 T; 34 other;
uuccauaaaa aagcgccuag gguuuuguga ccguuguuac ggucaauuca ugucugacac 60
aaugaccgua aucccguuca caacaccuug uguggcuuga auaaugaaau u 111
//
ID cbr-mir-239a standard; RNA; CBR; 113 BP.
XX
AC MI0001406;
XX
DE Caenorhabditis briggsae miR-239a stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae. The mature sequence
CC differs from the elegans sequence at 2 positions.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..51
FT /accession="MIMAT0001304"
FT /product="cbr-miR-239a"
FT /evidence=not_experimental
FT /similarity="MI0000314"
XX
SQ Sequence 113 BP; 41 A; 19 C; 23 G; 0 T; 30 other;
gagaaugacg auccaaguuu augcgauuuu uguacuacaa uuagguacug gacaccagca 60
gcgaguguau ccagaaucua uacuaguaca aaaauagcua acaggauuaa gau 113
//
ID cbr-mir-249 standard; RNA; CBR; 109 BP.
XX
AC MI0001407;
XX
DE Caenorhabditis briggsae miR-249 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae. The mature sequence
CC differs from the elegans sequence at 2 positions.
XX
FH Key Location/Qualifiers
FH
FT miRNA 75..96
FT /accession="MIMAT0001305"
FT /product="cbr-miR-249"
FT /evidence=not_experimental
FT /similarity="MI0000325"
XX
SQ Sequence 109 BP; 30 A; 20 C; 23 G; 0 T; 36 other;
auuuguuauu uugugcgccc ucaaugcuac uagcaacgcu caaaaaucac uguacgacaa 60
augacuauau uuugucacag gauuuuugag uguugcuagu cggagaagg 109
//
ID cbr-mir-240 standard; RNA; CBR; 113 BP.
XX
AC MI0001408;
XX
DE Caenorhabditis briggsae miR-240 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae. The mature sequence
CC differs from the elegans sequence at 2 positions.
XX
FH Key Location/Qualifiers
FH
FT miRNA 72..93
FT /accession="MIMAT0001306"
FT /product="cbr-miR-240"
FT /evidence=not_experimental
FT /similarity="MI0000316"
XX
SQ Sequence 113 BP; 27 A; 22 C; 23 G; 0 T; 41 other;
cgcugucuuu auuuugaaac uguuuucaaa ucgagaauuu cgaggccuga augcaagaac 60
cguuuugagc auacuggccu ccaaauuuuc gcuuugaauu uuaguuacgc gug 113
//
ID cbr-mir-254 standard; RNA; CBR; 108 BP.
XX
AC MI0001409;
XX
DE Caenorhabditis briggsae miR-254 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae. The mature sequence
CC differs from the elegans sequence at 4 positions.
XX
FH Key Location/Qualifiers
FH
FT miRNA 63..85
FT /accession="MIMAT0001307"
FT /product="cbr-miR-254"
FT /evidence=not_experimental
FT /similarity="MI0000330"
XX
SQ Sequence 108 BP; 26 A; 28 C; 23 G; 0 T; 31 other;
cuccacucua ugcggguugc cguauacaga agcaucgauu uucacacgcc augaugcgcc 60
ugugcaaauc uuuugcaacu guauacggcg auuuagcaga ccauauug 108
//
ID cbr-mir-239b standard; RNA; CBR; 112 BP.
XX
AC MI0001410;
XX
DE Caenorhabditis briggsae miR-239b stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae. The mature sequence
CC differs from the elegans sequence at 1 position.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..40
FT /accession="MIMAT0001308"
FT /product="cbr-miR-239b"
FT /evidence=not_experimental
FT /similarity="MI0000315"
XX
SQ Sequence 112 BP; 33 A; 20 C; 23 G; 0 T; 36 other;
uaggacagac augcaauuuu uguacugcac aaaaguacug acuauuucuc agcgcuuuug 60
uccagugcaa gaauggcaag agcuggucca uuuuuuuagg gauuaaacaa uu 112
//
ID cbr-mir-62 standard; RNA; CBR; 110 BP.
XX
AC MI0001411;
XX
DE Caenorhabditis briggsae miR-62 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..82
FT /accession="MIMAT0001309"
FT /product="cbr-miR-62"
FT /evidence=not_experimental
FT /similarity="MI0000033"
XX
SQ Sequence 110 BP; 28 A; 27 C; 22 G; 0 T; 33 other;
cccuugcaac ucggcuauua uaaggugggu uagaucccau auccuuccgc uugauggaaa 60
ugauauguaa ucuagcuuac aggucucuca acaucuccaa gacggugcua 110
//
ID cbr-mir-55 standard; RNA; CBR; 112 BP.
XX
AC MI0001412;
XX
DE Caenorhabditis briggsae miR-55 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae. The mature sequence
CC differs from the elegans sequence at 3 positions.
XX
FH Key Location/Qualifiers
FH
FT miRNA 68..90
FT /accession="MIMAT0001310"
FT /product="cbr-miR-55"
FT /evidence=not_experimental
FT /similarity="MI0000026"
XX
SQ Sequence 112 BP; 37 A; 24 C; 25 G; 0 T; 26 other;
aaaauugaau cgucacaaag ggggacucgg cggaaaauau ggugguauac uacacaguga 60
auagauauac ccguauauuu uucugccgag ccccuccacg acaucaauaa gg 112
//
ID cbr-mir-84 standard; RNA; CBR; 114 BP.
XX
AC MI0001413;
XX
DE Caenorhabditis briggsae miR-84 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae. The mature sequence
CC differs from the elegans sequence at 4 positions.
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..60
FT /accession="MIMAT0001311"
FT /product="cbr-miR-84"
FT /evidence=not_experimental
FT /similarity="MI0000055"
XX
SQ Sequence 114 BP; 34 A; 25 C; 21 G; 0 T; 34 other;
uugcuauaua uucagccgua cugucugaaa auaacaucug agguaguuug caaugcuguc 60
gacguaacug aaaagucaac aucauuccaa cuuccucggc uguucaaaag gcua 114
//
ID cbr-mir-354 standard; RNA; CBR; 109 BP.
XX
AC MI0001414;
XX
DE Caenorhabditis briggsae miR-354 stem-loop
XX
RN [1]
RX PUBMED; 15317971.
RA Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB;
RT "Patterns of flanking sequence conservation and a characteristic upstream
RT motif for microRNA gene identification";
RL RNA. 10:1309-1322(2004).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 80..100
FT /accession="MIMAT0001312"
FT /product="cbr-miR-354"
FT /evidence=not_experimental
FT /similarity="MI0000753"
XX
SQ Sequence 109 BP; 15 A; 30 C; 26 G; 0 T; 38 other;
ccagagccga cuaagugccu uggugcggcu acagacgggu auccggcucg auguucauac 60
accgcgacuc uuuccuuuua ccuuguuugu ugcugcuccu uuugguuuu 109
//
ID cbr-mir-35a standard; RNA; CBR; 112 BP.
XX
AC MI0001415;
XX
DE Caenorhabditis briggsae miR-35 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae. The mature sequence
CC differs from the elegans sequence at 4 positions.
XX
FH Key Location/Qualifiers
FH
FT miRNA 59..80
FT /accession="MIMAT0001313"
FT /product="cbr-miR-35a"
FT /evidence=not_experimental
FT /similarity="MI0000006"
XX
SQ Sequence 112 BP; 21 A; 23 C; 27 G; 0 T; 41 other;
uaguccaguu cuggacauuc gcggguuuuu uccuucggug auauucgaag aaucgcuauc 60
accgggugaa aacuugcaag ugucuugcuu cgacugguca uuuugcuugu au 112
//
ID cbr-mir-36 standard; RNA; CBR; 94 BP.
XX
AC MI0001416;
XX
DE Caenorhabditis briggsae miR-36 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae. The mature sequence
CC differs from the elegans sequence at 2 teminal 3' end positions.
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..77
FT /accession="MIMAT0001314"
FT /product="cbr-miR-36"
FT /evidence=not_experimental
FT /similarity="MI0000007"
XX
SQ Sequence 94 BP; 24 A; 19 C; 22 G; 0 T; 29 other;
ugaaaccuuc ggaccauugu gaauuuuugc ugcgguguua caacuaacau cuguaucacc 60
gggugaaaau ucgcaauggu ccgaugggua uuca 94
//
ID cbr-mir-38 standard; RNA; CBR; 96 BP.
XX
AC MI0001418;
XX
DE Caenorhabditis briggsae miR-38 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae. The mature sequence
CC differs from the elegans sequence at 4 positions.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..82
FT /accession="MIMAT0001315"
FT /product="cbr-miR-38"
FT /evidence=not_experimental
FT /similarity="MI0000009"
XX
SQ Sequence 96 BP; 22 A; 26 C; 23 G; 0 T; 25 other;
gagccuggac cuguaccggg uucucuuugu ggugauauga caacucauaa ccauuccuua 60
ucaccgggag acaaccuggu auagguccag cgacuc 96
//
ID cbr-mir-39 standard; RNA; CBR; 98 BP.
XX
AC MI0001419;
XX
DE Caenorhabditis briggsae miR-39 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae. The mature sequence
CC differs from the elegans sequence at 5 positions at the 3' end.
XX
FH Key Location/Qualifiers
FH
FT miRNA 59..80
FT /accession="MIMAT0001316"
FT /product="cbr-miR-39"
FT /evidence=not_experimental
FT /similarity="MI0000010"
XX
SQ Sequence 98 BP; 26 A; 22 C; 25 G; 0 T; 25 other;
cagagaugca gggagcccaa cugguucuca cugcagugau aagcuauguu acagucuauc 60
accgggugaa aaacgguuag gcucuuuaag caucucug 98
//
ID cbr-mir-40 standard; RNA; CBR; 98 BP.
XX
AC MI0001420;
XX
DE Caenorhabditis briggsae miR-40 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae. The mature sequence
CC differs from the elegans sequence at 3 positions.
XX
FH Key Location/Qualifiers
FH
FT miRNA 63..84
FT /accession="MIMAT0001317"
FT /product="cbr-miR-40"
FT /evidence=not_experimental
FT /similarity="MI0000011"
XX
SQ Sequence 98 BP; 18 A; 30 C; 26 G; 0 T; 24 other;
ccccugcccu caccccagcg gguuuucauc gcagugauau gacgcauuca aaccauuucu 60
uaucaccggg ugucaaucag cuagggugug ggcgcggg 98
//
ID cbr-mir-41a standard; RNA; CBR; 110 BP.
XX
AC MI0001421;
XX
DE Caenorhabditis briggsae miR-41 stem-loop
XX
RN [1]
RX PUBMED; 12672692.
RA Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB,
RA Bartel DP;
RT "The microRNAs of Caenorhabditis elegans";
RL Genes Dev. 17:991-1008(2003).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae. The mature sequence
CC differs from the elegans sequence at 3 positions.
XX
FH Key Location/Qualifiers
FH
FT miRNA 68..88
FT /accession="MIMAT0001318"
FT /product="cbr-miR-41a"
FT /evidence=not_experimental
FT /similarity="MI0000012"
XX
SQ Sequence 110 BP; 30 A; 24 C; 26 G; 0 T; 30 other;
ugaaagcagg ucccaaaugc cuuggugguu uuucgccgua gugauacaac aucgaagcca 60
uacgauauca ccgggugaaa aacucccaag gucgggacau uuuuauuugu 110
//
ID cbr-mir-355 standard; RNA; CBR; 109 BP.
XX
AC MI0001422;
XX
DE Caenorhabditis briggsae miR-355 stem-loop
XX
RN [1]
RX PUBMED; 15317971.
RA Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB;
RT "Patterns of flanking sequence conservation and a characteristic upstream
RT motif for microRNA gene identification";
RL RNA. 10:1309-1322(2004).
XX
CC This miRNA is the predicted homologue of a verified C. elegans miRNA [1].
CC Its expression has not been verified in C. briggsae.
XX
FH Key Location/Qualifiers
FH
FT miRNA 33..53
FT /accession="MIMAT0001319"
FT /product="cbr-miR-355"
FT /evidence=not_experimental
FT /similarity="MI0000754"
XX
SQ Sequence 109 BP; 30 A; 19 C; 21 G; 0 T; 39 other;
cuacugauua ugauuaguca gcaaucggau gguuuguuuu agccugagcu auguguuauu 60
gcauauucau agcuacuugc uaaaacauac caaucgaguu gacugacau 109
//
ID rno-mir-421 standard; RNA; RNO; 79 BP.
XX
AC MI0001423;
XX
DE Rattus norvegicus miR-421 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314066; Mir421.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0001320"
FT /product="rno-miR-421-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT miRNA 47..66
FT /accession="MIMAT0017175"
FT /product="rno-miR-421-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 79 BP; 25 A; 15 C; 16 G; 0 T; 23 other;
cacacuguag gccucauuaa auguuuguug aaugaaaaaa ugaaucauca acagacauua 60
auugggcgcc ugcucugug 79
//
ID ath-MIR413 standard; RNA; ATH; 123 BP.
XX
AC MI0001424;
XX
DE Arabidopsis thaliana miR413 stem-loop
XX
RN [1]
RX PUBMED; 15345049.
RA Wang XJ, Reyes JL, Chua NH, Gaasterland T;
RT "Prediction and identification of Arabidopsis thaliana microRNAs and their
RT mRNA targets";
RL Genome Biol. 5:R65(2004).
XX
RN [2]
RX PUBMED; 16669754.
RA Jones-Rhoades MW, Bartel DP, Bartel B;
RT "MicroRNAS and their regulatory roles in plants";
RL Annu Rev Plant Biol. 57:19-53(2006).
XX
CC The status of this sequence as a miRNA has been questioned on the basis of
CC lack of conservation in genomes other than Arabidopsis and rice,
CC moderately poor precursor hairpin structure, lack of identified targets,
CC and low Northern blot signal [2]. This sequence may therefore be removed
CC in subsequent data releases.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0001321"
FT /product="ath-miR413"
FT /evidence=experimental
FT /experiment="Northern [1]"
XX
SQ Sequence 123 BP; 36 A; 26 C; 26 G; 0 T; 35 other;
gauccauagu uucucuuguu cugcacaucc acuaacuuca ggaaccaugu cccaguuuca 60
gguuagauca agugggaaaa caaauggaag auuguggcua ugcagaaacu ggaacuauuc 120
guc 123
//
ID ath-MIR414 standard; RNA; ATH; 108 BP.
XX
AC MI0001425;
XX
DE Arabidopsis thaliana miR414 stem-loop
XX
RN [1]
RX PUBMED; 15345049.
RA Wang XJ, Reyes JL, Chua NH, Gaasterland T;
RT "Prediction and identification of Arabidopsis thaliana microRNAs and their
RT mRNA targets";
RL Genome Biol. 5:R65(2004).
XX
RN [2]
RX PUBMED; 16669754.
RA Jones-Rhoades MW, Bartel DP, Bartel B;
RT "MicroRNAS and their regulatory roles in plants";
RL Annu Rev Plant Biol. 57:19-53(2006).
XX
CC The status of this sequence as a miRNA has been questioned on the basis of
CC lack of conservation in genomes other than Arabidopsis and rice,
CC moderately poor precursor hairpin structure, lack of identified targets,
CC and low Northern blot signal [2]. This sequence may therefore be removed
CC in subsequent data releases.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0001322"
FT /product="ath-miR414"
FT /evidence=experimental
FT /experiment="Northern [1]"
XX
SQ Sequence 108 BP; 36 A; 19 C; 18 G; 0 T; 35 other;
ucaucauuau caucaucauc auauucaucu ucaucaucau cgucaucauc aucaucauca 60
ucguaugaga agauagagaa gagugagagu augagauuug aguugaga 108
//
ID ath-MIR415 standard; RNA; ATH; 110 BP.
XX
AC MI0001426;
XX
DE Arabidopsis thaliana miR415 stem-loop
XX
RN [1]
RX PUBMED; 15345049.
RA Wang XJ, Reyes JL, Chua NH, Gaasterland T;
RT "Prediction and identification of Arabidopsis thaliana microRNAs and their
RT mRNA targets";
RL Genome Biol. 5:R65(2004).
XX
RN [2]
RX PUBMED; 16669754.
RA Jones-Rhoades MW, Bartel DP, Bartel B;
RT "MicroRNAS and their regulatory roles in plants";
RL Annu Rev Plant Biol. 57:19-53(2006).
XX
CC The status of this sequence as a miRNA has been questioned on the basis of
CC lack of conservation in genomes other than Arabidopsis and rice,
CC moderately poor precursor hairpin structure, lack of identified targets,
CC and low Northern blot signal [2]. This sequence may therefore be removed
CC in subsequent data releases.
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..23
FT /accession="MIMAT0001323"
FT /product="ath-miR415"
FT /evidence=experimental
FT /experiment="Northern [1]"
XX
SQ Sequence 110 BP; 33 A; 20 C; 20 G; 0 T; 37 other;
agaacagagc agaaacagaa cauauauucu cugucuuuuu uuguggcaaa aguaaauggc 60
gagaagacaa cucuuuuacc aucgaauguu cuugguuuua gcucuucucu 110
//
ID ath-MIR416 standard; RNA; ATH; 80 BP.
XX
AC MI0001427;
XX
DE Arabidopsis thaliana miR416 stem-loop
XX
RN [1]
RX PUBMED; 15345049.
RA Wang XJ, Reyes JL, Chua NH, Gaasterland T;
RT "Prediction and identification of Arabidopsis thaliana microRNAs and their
RT mRNA targets";
RL Genome Biol. 5:R65(2004).
XX
RN [2]
RX PUBMED; 16669754.
RA Jones-Rhoades MW, Bartel DP, Bartel B;
RT "MicroRNAS and their regulatory roles in plants";
RL Annu Rev Plant Biol. 57:19-53(2006).
XX
CC The status of this sequence as a miRNA has been questioned on the basis of
CC lack of conservation in genomes other than Arabidopsis and rice,
CC moderately poor precursor hairpin structure, lack of identified targets,
CC and low Northern blot signal [2]. This sequence may therefore be removed
CC in subsequent data releases.
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..77
FT /accession="MIMAT0001324"
FT /product="ath-miR416"
FT /evidence=experimental
FT /experiment="Northern [1]"
XX
SQ Sequence 80 BP; 21 A; 20 C; 20 G; 0 T; 19 other;
cgaaacugaa cccgguuugu acguauggac cgcgucguug gaauccaaaa gaaccagguu 60
cguacguaca cuguucaucg 80
//
ID ath-MIR417 standard; RNA; ATH; 117 BP.
XX
AC MI0001428;
XX
DE Arabidopsis thaliana miR417 stem-loop
XX
RN [1]
RX PUBMED; 15345049.
RA Wang XJ, Reyes JL, Chua NH, Gaasterland T;
RT "Prediction and identification of Arabidopsis thaliana microRNAs and their
RT mRNA targets";
RL Genome Biol. 5:R65(2004).
XX
RN [2]
RX PUBMED; 16669754.
RA Jones-Rhoades MW, Bartel DP, Bartel B;
RT "MicroRNAS and their regulatory roles in plants";
RL Annu Rev Plant Biol. 57:19-53(2006).
XX
CC The status of this sequence as a miRNA has been questioned on the basis of
CC lack of conservation in genomes other than Arabidopsis and rice,
CC moderately poor precursor hairpin structure, lack of identified targets,
CC and low Northern blot signal [2]. This sequence may therefore be removed
CC in subsequent data releases.
XX
FH Key Location/Qualifiers
FH
FT miRNA 78..98
FT /accession="MIMAT0001325"
FT /product="ath-miR417"
FT /evidence=experimental
FT /experiment="Northern [1]"
XX
SQ Sequence 117 BP; 39 A; 14 C; 19 G; 0 T; 45 other;
aaauauauuc aaaagugguc aaaacacguc acuauuuccu uuauguuuuc cccuuauuga 60
uggaaauggu uaaacaugaa gguagugaau uuguucgaau aauauguuga uauauuu 117
//
ID ath-MIR418 standard; RNA; ATH; 73 BP.
XX
AC MI0001429;
XX
DE Arabidopsis thaliana miR418 stem-loop
XX
RN [1]
RX PUBMED; 15345049.
RA Wang XJ, Reyes JL, Chua NH, Gaasterland T;
RT "Prediction and identification of Arabidopsis thaliana microRNAs and their
RT mRNA targets";
RL Genome Biol. 5:R65(2004).
XX
RN [2]
RX PUBMED; 16669754.
RA Jones-Rhoades MW, Bartel DP, Bartel B;
RT "MicroRNAS and their regulatory roles in plants";
RL Annu Rev Plant Biol. 57:19-53(2006).
XX
CC The status of this sequence as a miRNA has been questioned on the basis of
CC lack of conservation in genomes other than Arabidopsis and rice,
CC moderately poor precursor hairpin structure, lack of identified targets,
CC and low Northern blot signal [2]. This sequence may therefore be removed
CC in subsequent data releases.
XX
FH Key Location/Qualifiers
FH
FT miRNA 48..68
FT /accession="MIMAT0001326"
FT /product="ath-miR418"
FT /evidence=experimental
FT /experiment="Northern [1]"
XX
SQ Sequence 73 BP; 30 A; 10 C; 13 G; 0 T; 20 other;
uuuaaauuua gaaucuagcg uaaaaagaaa auccgaauca ggaacucuaa ugugaugaug 60
aacugaccuu aga 73
//
ID ath-MIR419 standard; RNA; ATH; 106 BP.
XX
AC MI0001430;
XX
DE Arabidopsis thaliana miR419 stem-loop
XX
RN [1]
RX PUBMED; 15345049.
RA Wang XJ, Reyes JL, Chua NH, Gaasterland T;
RT "Prediction and identification of Arabidopsis thaliana microRNAs and their
RT mRNA targets";
RL Genome Biol. 5:R65(2004).
XX
RN [2]
RX PUBMED; 16669754.
RA Jones-Rhoades MW, Bartel DP, Bartel B;
RT "MicroRNAS and their regulatory roles in plants";
RL Annu Rev Plant Biol. 57:19-53(2006).
XX
CC The status of this sequence as a miRNA has been questioned on the basis of
CC lack of conservation in genomes other than Arabidopsis and rice,
CC moderately poor precursor hairpin structure, lack of identified targets,
CC and low Northern blot signal [2]. This sequence may therefore be removed
CC in subsequent data releases.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..24
FT /accession="MIMAT0001327"
FT /product="ath-miR419"
FT /evidence=experimental
FT /experiment="Northern [1]"
XX
SQ Sequence 106 BP; 36 A; 11 C; 21 G; 0 T; 38 other;
aaauuaugaa ugcugaggau guuguuauua cgagcaauga gaugucuuuu uuuaaaaaaa 60
aaaauuuggu ugcuugcuug caagaggaca ucuuagcauc aaauuu 106
//
ID ath-MIR420 standard; RNA; ATH; 100 BP.
XX
AC MI0001431;
XX
DE Arabidopsis thaliana miR420 stem-loop
XX
RN [1]
RX PUBMED; 15345049.
RA Wang XJ, Reyes JL, Chua NH, Gaasterland T;
RT "Prediction and identification of Arabidopsis thaliana microRNAs and their
RT mRNA targets";
RL Genome Biol. 5:R65(2004).
XX
RN [2]
RX PUBMED; 16669754.
RA Jones-Rhoades MW, Bartel DP, Bartel B;
RT "MicroRNAS and their regulatory roles in plants";
RL Annu Rev Plant Biol. 57:19-53(2006).
XX
CC The status of this sequence as a miRNA has been questioned on the basis of
CC lack of conservation in genomes other than Arabidopsis and rice,
CC moderately poor precursor hairpin structure, lack of identified targets,
CC and low Northern blot signal [2]. This sequence may therefore be removed
CC in subsequent data releases.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..24
FT /accession="MIMAT0001328"
FT /product="ath-miR420"
FT /evidence=experimental
FT /experiment="Northern [1]"
XX
SQ Sequence 100 BP; 29 A; 17 C; 11 G; 0 T; 43 other;
uucuaaacua aucacggaaa ugcaaaaauu ggauacuaca cuaucaacuu uuuucuuuug 60
uucucuuuau cucgugaauu uccauuuaau gaguuuaguu 100
//
ID osa-MIR413 standard; RNA; OSA; 113 BP.
XX
AC MI0001433;
XX
DE Oryza sativa miR413 stem-loop
XX
RN [1]
RX PUBMED; 15345049.
RA Wang XJ, Reyes JL, Chua NH, Gaasterland T;
RT "Prediction and identification of Arabidopsis thaliana microRNAs and their
RT mRNA targets";
RL Genome Biol. 5:R65(2004).
XX
RN [2]
RX PUBMED; 16669754.
RA Jones-Rhoades MW, Bartel DP, Bartel B;
RT "MicroRNAS and their regulatory roles in plants";
RL Annu Rev Plant Biol. 57:19-53(2006).
XX
CC The status of this sequence as a miRNA has been questioned on the basis of
CC lack of conservation in genomes other than Arabidopsis and rice,
CC moderately poor precursor hairpin structure, lack of identified targets,
CC and low Northern blot signal [2]. This sequence may therefore be removed
CC in subsequent data releases.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..25
FT /accession="MIMAT0001329"
FT /product="osa-miR413"
FT /evidence=not_experimental
FT /similarity="MI0001424"
XX
SQ Sequence 113 BP; 41 A; 22 C; 20 G; 0 T; 30 other;
acggcuaguu ucacuuguuc ugcacaugug gaaaacaguu agcacucuau cugagucgua 60
aucccaagca uuauuacaga aaaauaaaag ugcauuacaa agaagucaga cau 113
//
ID osa-MIR414 standard; RNA; OSA; 106 BP.
XX
AC MI0001434;
XX
DE Oryza sativa miR414 stem-loop
XX
RN [1]
RX PUBMED; 15345049.
RA Wang XJ, Reyes JL, Chua NH, Gaasterland T;
RT "Prediction and identification of Arabidopsis thaliana microRNAs and their
RT mRNA targets";
RL Genome Biol. 5:R65(2004).
XX
RN [2]
RX PUBMED; 16669754.
RA Jones-Rhoades MW, Bartel DP, Bartel B;
RT "MicroRNAS and their regulatory roles in plants";
RL Annu Rev Plant Biol. 57:19-53(2006).
XX
CC The status of this sequence as a miRNA has been questioned on the basis of
CC lack of conservation in genomes other than Arabidopsis and rice,
CC moderately poor precursor hairpin structure, lack of identified targets,
CC and low Northern blot signal [2]. This sequence may therefore be removed
CC in subsequent data releases.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0001330"
FT /product="osa-miR414"
FT /evidence=not_experimental
FT /similarity="MI0001425"
XX
SQ Sequence 106 BP; 18 A; 27 C; 44 G; 0 T; 17 other;
guugccgcug ccgucauccu caucaucauc guccuugcau gaaaccgcca gcaaauccuu 60
gcgcgggggg agggggaagg ggagggggag gggucggagg ggcggc 106
//
ID osa-MIR415 standard; RNA; OSA; 144 BP.
XX
AC MI0001435;
XX
DE Oryza sativa miR415 stem-loop
XX
RN [1]
RX PUBMED; 15345049.
RA Wang XJ, Reyes JL, Chua NH, Gaasterland T;
RT "Prediction and identification of Arabidopsis thaliana microRNAs and their
RT mRNA targets";
RL Genome Biol. 5:R65(2004).
XX
RN [2]
RX PUBMED; 16669754.
RA Jones-Rhoades MW, Bartel DP, Bartel B;
RT "MicroRNAS and their regulatory roles in plants";
RL Annu Rev Plant Biol. 57:19-53(2006).
XX
CC The status of this sequence as a miRNA has been questioned on the basis of
CC lack of conservation in genomes other than Arabidopsis and rice,
CC moderately poor precursor hairpin structure, lack of identified targets,
CC and low Northern blot signal [2]. This sequence may therefore be removed
CC in subsequent data releases.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001331"
FT /product="osa-miR415"
FT /evidence=not_experimental
FT /similarity="MI0001426"
XX
SQ Sequence 144 BP; 53 A; 34 C; 32 G; 0 T; 25 other;
agagaguuuu acagagcaga aacagaacag aagcagagca gcuguguaua cacaacacug 60
caacuauccc uaucacugag ggacaaagca gaaaccagcu gagcucuccu uggcugucug 120
uacaagcaaa gcaaaagcuu caag 144
//
ID osa-MIR416 standard; RNA; OSA; 109 BP.
XX
AC MI0001436;
XX
DE Oryza sativa miR416 stem-loop
XX
RN [1]
RX PUBMED; 15345049.
RA Wang XJ, Reyes JL, Chua NH, Gaasterland T;
RT "Prediction and identification of Arabidopsis thaliana microRNAs and their
RT mRNA targets";
RL Genome Biol. 5:R65(2004).
XX
RN [2]
RX PUBMED; 16669754.
RA Jones-Rhoades MW, Bartel DP, Bartel B;
RT "MicroRNAS and their regulatory roles in plants";
RL Annu Rev Plant Biol. 57:19-53(2006).
XX
CC The status of this sequence as a miRNA has been questioned on the basis of
CC lack of conservation in genomes other than Arabidopsis and rice,
CC moderately poor precursor hairpin structure, lack of identified targets,
CC and low Northern blot signal [2]. This sequence may therefore be removed
CC in subsequent data releases.
XX
FH Key Location/Qualifiers
FH
FT miRNA 87..107
FT /accession="MIMAT0001332"
FT /product="osa-miR416"
FT /evidence=not_experimental
FT /similarity="MI0001427"
XX
SQ Sequence 109 BP; 31 A; 19 C; 27 G; 0 T; 32 other;
gaugaggagu augaauagaa agaauuagaa aagcuacggu gguuguugag cagcgccaaa 60
aaaaacucug cuuugcucug uuucuguguu cguccguaca cuguucauc 109
//
ID osa-MIR417 standard; RNA; OSA; 66 BP.
XX
AC MI0001437;
XX
DE Oryza sativa miR417 stem-loop
XX
RN [1]
RX PUBMED; 15345049.
RA Wang XJ, Reyes JL, Chua NH, Gaasterland T;
RT "Prediction and identification of Arabidopsis thaliana microRNAs and their
RT mRNA targets";
RL Genome Biol. 5:R65(2004).
XX
RN [2]
RX PUBMED; 16669754.
RA Jones-Rhoades MW, Bartel DP, Bartel B;
RT "MicroRNAS and their regulatory roles in plants";
RL Annu Rev Plant Biol. 57:19-53(2006).
XX
CC The status of this sequence as a miRNA has been questioned on the basis of
CC lack of conservation in genomes other than Arabidopsis and rice,
CC moderately poor precursor hairpin structure, lack of identified targets,
CC and low Northern blot signal [2]. This sequence may therefore be removed
CC in subsequent data releases.
XX
FH Key Location/Qualifiers
FH
FT miRNA 44..64
FT /accession="MIMAT0001333"
FT /product="osa-miR417"
FT /evidence=not_experimental
FT /similarity="MI0001428"
XX
SQ Sequence 66 BP; 20 A; 6 C; 10 G; 0 T; 30 other;
uuugguacaa auuugaauuc uuaaaucucu uauauuauga uaugaaugua gugaauuugu 60
uccaug 66
//
ID osa-MIR418 standard; RNA; OSA; 82 BP.
XX
AC MI0001438;
XX
DE Oryza sativa miR418 stem-loop
XX
RN [1]
RX PUBMED; 15345049.
RA Wang XJ, Reyes JL, Chua NH, Gaasterland T;
RT "Prediction and identification of Arabidopsis thaliana microRNAs and their
RT mRNA targets";
RL Genome Biol. 5:R65(2004).
XX
RN [2]
RX PUBMED; 16669754.
RA Jones-Rhoades MW, Bartel DP, Bartel B;
RT "MicroRNAS and their regulatory roles in plants";
RL Annu Rev Plant Biol. 57:19-53(2006).
XX
CC The status of this sequence as a miRNA has been questioned on the basis of
CC lack of conservation in genomes other than Arabidopsis and rice,
CC moderately poor precursor hairpin structure, lack of identified targets,
CC and low Northern blot signal [2]. This sequence may therefore be removed
CC in subsequent data releases.
XX
FH Key Location/Qualifiers
FH
FT miRNA 42..62
FT /accession="MIMAT0001334"
FT /product="osa-miR418"
FT /evidence=not_experimental
FT /similarity="MI0001429"
XX
SQ Sequence 82 BP; 20 A; 20 C; 14 G; 0 T; 28 other;
cguuagcugu cugcaaucug ccauucuuau caucgcacau uuaaugugau gaugaaauga 60
cgcauuucug ucaagucuca cc 82
//
ID osa-MIR419 standard; RNA; OSA; 103 BP.
XX
AC MI0001439;
XX
DE Oryza sativa miR419 stem-loop
XX
RN [1]
RX PUBMED; 15345049.
RA Wang XJ, Reyes JL, Chua NH, Gaasterland T;
RT "Prediction and identification of Arabidopsis thaliana microRNAs and their
RT mRNA targets";
RL Genome Biol. 5:R65(2004).
XX
RN [2]
RX PUBMED; 16669754.
RA Jones-Rhoades MW, Bartel DP, Bartel B;
RT "MicroRNAS and their regulatory roles in plants";
RL Annu Rev Plant Biol. 57:19-53(2006).
XX
CC The status of this sequence as a miRNA has been questioned on the basis of
CC lack of conservation in genomes other than Arabidopsis and rice,
CC moderately poor precursor hairpin structure, lack of identified targets,
CC and low Northern blot signal [2]. This sequence may therefore be removed
CC in subsequent data releases.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0001335"
FT /product="osa-miR419"
FT /evidence=not_experimental
FT /similarity="MI0001430"
XX
SQ Sequence 103 BP; 18 A; 14 C; 24 G; 0 T; 47 other;
ucuucucugu ucucugugau gaaugcugac gauguuguag augugaacuu uuuuuuucuc 60
uguugucuau gaugaaugcu uguuguccug gagauauugu aga 103
//
ID ath-MIR426 standard; RNA; ATH; 111 BP.
XX
AC MI0001441;
XX
DE Arabidopsis thaliana miR426 stem-loop
XX
RN [1]
RX PUBMED; 15345049.
RA Wang XJ, Reyes JL, Chua NH, Gaasterland T;
RT "Prediction and identification of Arabidopsis thaliana microRNAs and their
RT mRNA targets";
RL Genome Biol. 5:R65(2004).
XX
RN [2]
RX PUBMED; 16669754.
RA Jones-Rhoades MW, Bartel DP, Bartel B;
RT "MicroRNAS and their regulatory roles in plants";
RL Annu Rev Plant Biol. 57:19-53(2006).
XX
CC miR426 was predicted and validated using procedures described in [1], but
CC the sequence itself was not reported (Takashi Soyano, pers. comm.). The
CC status of this sequence as a miRNA has been questioned on the basis of
CC lack of conservation in genomes other than Arabidopsis and rice,
CC moderately poor precursor hairpin structure, lack of identified targets,
CC and low Northern blot signal [2]. This sequence may therefore be removed
CC in subsequent data releases.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0001337"
FT /product="ath-miR426"
FT /evidence=experimental
FT /experiment="Northern [1]"
XX
SQ Sequence 111 BP; 42 A; 15 C; 25 G; 0 T; 29 other;
gaggggggac aauuuuugga aauuuguccu uacggguagu acuagaauac uuguccacau 60
gacgauuuga aauaaccgaa ggacauauga ggaaaaaaua aaauuaaacu c 111
//
ID osa-MIR426 standard; RNA; OSA; 148 BP.
XX
AC MI0001442;
XX
DE Oryza sativa miR426 stem-loop
XX
RN [1]
RX PUBMED; 15345049.
RA Wang XJ, Reyes JL, Chua NH, Gaasterland T;
RT "Prediction and identification of Arabidopsis thaliana microRNAs and their
RT mRNA targets";
RL Genome Biol. 5:R65(2004).
XX
RN [2]
RX PUBMED; 16669754.
RA Jones-Rhoades MW, Bartel DP, Bartel B;
RT "MicroRNAS and their regulatory roles in plants";
RL Annu Rev Plant Biol. 57:19-53(2006).
XX
CC The status of this sequence as a miRNA has been questioned on the basis of
CC lack of conservation in genomes other than Arabidopsis and rice,
CC moderately poor precursor hairpin structure, lack of identified targets,
CC and low Northern blot signal [2]. This sequence may therefore be removed
CC in subsequent data releases.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..27
FT /accession="MIMAT0001338"
FT /product="osa-miR426"
FT /evidence=not_experimental
FT /similarity="MI0001441"
XX
SQ Sequence 148 BP; 54 A; 23 C; 27 G; 0 T; 44 other;
ucgcauuuuu ggaaguuugu ccuuacgaaa aggcuagcaa aauuuaguga ggcaaugaau 60
gaaaagacau cuagcgauac uaaaauuaaa auuugauaac ccuaaaaugu gucaaacuuu 120
ggcauuucgu gaaaauccuu caaugcga 148
//
ID hsa-mir-422a standard; RNA; HSA; 90 BP.
XX
AC MI0001444;
XX
DE Homo sapiens miR-422a stem-loop
XX
RN [1]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 31879; MIR422A.
DR ENTREZGENE; 494334; MIR422A.
XX
CC miR-422a is an predicted paralogue of miR-422b (MIR:MI0001443), later
CC verified in human [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0001339"
FT /product="hsa-miR-422a"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000786"
XX
SQ Sequence 90 BP; 16 A; 25 C; 27 G; 0 T; 22 other;
gagagaagca cuggacuuag ggucagaagg ccugagucuc ucugcugcag augggcucuc 60
ugucccugag ccaagcuuug uccucccugg 90
//
ID hsa-mir-423 standard; RNA; HSA; 94 BP.
XX
AC MI0001445;
XX
DE Homo sapiens miR-423 stem-loop
XX
RN [1]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
RN [4]
RX PUBMED; 18230126.
RA Afanasyeva EA, Hotz-Wagenblatt A, Glatting KH, Westermann F;
RT "New miRNAs cloned from neuroblastoma";
RL BMC Genomics. 9:52(2008).
XX
RN [5]
RX PUBMED; 20158877.
RA Koh W, Sheng CT, Tan B, Lee QY, Kuznetsov V, Kiang LS, Tanavde V;
RT "Analysis of deep sequencing microRNA expression profile from human
RT embryonic stem cells derived mesenchymal stem cells reveals possible role
RT of let-7 microRNA family in downstream targeting of hepatic nuclear factor
RT 4 alpha";
RL BMC Genomics. 11 Suppl 1:S6(2010).
XX
DR HGNC; 31880; MIR423.
DR ENTREZGENE; 494335; MIR423.
XX
CC miR-423 (renamed miR-423-3p here) is expressed in human promyelocytic
CC leukemia (HL-60) cells [1]. The level of expression was shown to be
CC up-regulated 48 hours after TPA-induction. The mature sequence shown here
CC represents the most commonly cloned form from large-scale cloning studies
CC [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0004748"
FT /product="hsa-miR-423-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4], Northern [4], Illumina [5]"
FT miRNA 53..75
FT /accession="MIMAT0001340"
FT /product="hsa-miR-423-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
XX
SQ Sequence 94 BP; 22 A; 24 C; 25 G; 0 T; 23 other;
auaaaggaag uuaggcugag gggcagagag cgagacuuuu cuauuuucca aaagcucggu 60
cugaggcccc ucagucuugc uuccuaaccc gcgc 94
//
ID hsa-mir-424 standard; RNA; HSA; 98 BP.
XX
AC MI0001446;
XX
DE Homo sapiens miR-424 stem-loop
XX
RN [1]
RX PUBMED; 15325244.
RA Kasashima K, Nakamura Y, Kozu T;
RT "Altered expression profiles of microRNAs during TPA-induced
RT differentiation of HL-60 cells";
RL Biochem Biophys Res Commun. 322:403-410(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 31881; MIR424.
DR ENTREZGENE; 494336; MIR424.
XX
CC This hairpin precursor expresses a 5' arm product, named miR-424, in human
CC promyelocytic leukemia (HL-60) cells [1]. The level of expression of
CC miR-424 was shown to be up-regulated 48 hours after TPA-induction. The
CC sequence is orthologous to the experimentally verified rat miR-322 locus
CC (MIR:MI0000589), which expresses its mature product from the 3' arm of the
CC hairpin. The human miR-424 hairpin does not appear to contain the miR-322
CC sequence.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001341"
FT /product="hsa-miR-424-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
FT miRNA 48..68
FT /accession="MIMAT0004749"
FT /product="hsa-miR-424-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
XX
SQ Sequence 98 BP; 25 A; 17 C; 33 G; 0 T; 23 other;
cgaggggaua cagcagcaau ucauguuuug aaguguucua aaugguucaa aacgugaggc 60
gcugcuauac ccccucgugg ggaagguaga aggugggg 98
//
ID mmu-mir-425 standard; RNA; MMU; 85 BP.
XX
AC MI0001447;
XX
DE Mus musculus miR-425 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619401; Mir425.
DR ENTREZGENE; 723864; Mir425.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0004750"
FT /product="mmu-miR-425-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 54..74
FT /accession="MIMAT0001342"
FT /product="mmu-miR-425-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 85 BP; 19 A; 23 C; 23 G; 0 T; 20 other;
aaagugcuuu ggaaugacac gaucacuccc guugaguggg cacccaagaa gccaucggga 60
augucguguc cgcccagugc ucuuu 85
//
ID hsa-mir-425 standard; RNA; HSA; 87 BP.
XX
AC MI0001448;
XX
DE Homo sapiens miR-425 stem-loop
XX
RN [1]
RX PUBMED; 15538371.
RA Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer
RA S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M;
RT "A pancreatic islet-specific microRNA regulates insulin secretion";
RL Nature. 432:226-230(2004).
XX
RN [2]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 31882; MIR425.
DR ENTREZGENE; 494337; MIR425.
XX
CC The mature sequences were previously named miR-425-5p and miR-425-3p in
CC [2] and here. Landgraf et al. show that the 5' product is the predominant
CC one [3]. The mature sequence shown here represents the most commonly
CC cloned form from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0003393"
FT /product="hsa-miR-425-5p"
FT /evidence=experimental
FT /experiment="cloned [2-4]"
FT miRNA 55..76
FT /accession="MIMAT0001343"
FT /product="hsa-miR-425-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3]"
FT /similarity="MI0001447"
XX
SQ Sequence 87 BP; 18 A; 25 C; 25 G; 0 T; 19 other;
gaaagcgcuu uggaaugaca cgaucacucc cguugagugg gcacccgaga agccaucggg 60
aaugucgugu ccgcccagug cucuuuc 87
//
ID xla-mir-427 standard; RNA; XLA; 68 BP.
XX
AC MI0001449;
XX
DE Xenopus laevis miR-427 stem-loop
XX
RN [1]
RX PUBMED; 15642338.
RA Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, Minami N, Imai H;
RT "Stage-specific expression of microRNAs during Xenopus development";
RL FEBS Lett. 579:318-324(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 45..66
FT /accession="MIMAT0001344"
FT /product="xla-miR-427"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 68 BP; 15 A; 13 C; 17 G; 0 T; 23 other;
agcacccaaa acggggcucu cucuugugac ugaauuauga ugagaaagug cuuucuguuu 60
uuggcguu 68
//
ID xla-mir-428 standard; RNA; XLA; 71 BP.
XX
AC MI0001450;
XX
DE Xenopus laevis miR-428 stem-loop
XX
RN [1]
RX PUBMED; 15642338.
RA Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, Minami N, Imai H;
RT "Stage-specific expression of microRNAs during Xenopus development";
RL FEBS Lett. 579:318-324(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 43..64
FT /accession="MIMAT0001345"
FT /product="xla-miR-428"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 71 BP; 11 A; 16 C; 21 G; 0 T; 23 other;
cacauuggcc aaacuggggc gcugucuccu uguaucagug aguaagugcu cucuaguucg 60
guugcugugu g 71
//
ID xla-mir-429 standard; RNA; XLA; 61 BP.
XX
AC MI0001451;
XX
DE Xenopus laevis miR-429 stem-loop
XX
RN [1]
RX PUBMED; 15642338.
RA Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, Minami N, Imai H;
RT "Stage-specific expression of microRNAs during Xenopus development";
RL FEBS Lett. 579:318-324(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 40..60
FT /accession="MIMAT0001346"
FT /product="xla-miR-429"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 61 BP; 15 A; 13 C; 12 G; 0 T; 21 other;
augucuuacc agacaagguu agaucuaguu acucucgucu aauacugucu gguaaugccg 60
u 61
//
ID xla-mir-19b standard; RNA; XLA; 73 BP.
XX
AC MI0001452;
XX
DE Xenopus laevis miR-19b stem-loop
XX
RN [1]
RX PUBMED; 15642338.
RA Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, Minami N, Imai H;
RT "Stage-specific expression of microRNAs during Xenopus development";
RL FEBS Lett. 579:318-324(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 44..66
FT /accession="MIMAT0001347"
FT /product="xla-miR-19b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 73 BP; 14 A; 18 C; 19 G; 0 T; 22 other;
gcuccuguca guuuagcugg uuugcaucag cuggcuacug ugcugugcaa auccaugcaa 60
aacugacugu ggc 73
//
ID xla-mir-20 standard; RNA; XLA; 74 BP.
XX
AC MI0001453;
XX
DE Xenopus laevis miR-20 stem-loop
XX
RN [1]
RX PUBMED; 15642338.
RA Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, Minami N, Imai H;
RT "Stage-specific expression of microRNAs during Xenopus development";
RL FEBS Lett. 579:318-324(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0001348"
FT /product="xla-miR-20"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 74 BP; 18 A; 14 C; 17 G; 0 T; 25 other;
gcaguuccaa agugcucaua gugcagguag uuguauucau guucuacugu aauaugggca 60
cuuacaguac ugcu 74
//
ID xla-mir-18a-1 standard; RNA; XLA; 79 BP.
XX
AC MI0001454;
XX
DE Xenopus laevis miR-18a-1 stem-loop
XX
RN [1]
RX PUBMED; 15642338.
RA Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, Minami N, Imai H;
RT "Stage-specific expression of microRNAs during Xenopus development";
RL FEBS Lett. 579:318-324(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0001349"
FT /product="xla-miR-18a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 79 BP; 17 A; 18 C; 20 G; 0 T; 24 other;
ccuuguguua aggugcaucu agugcaguua gugacauagc guagcaucua cugcccuaaa 60
ugcuccuuuu ggcacaggg 79
//
ID xla-mir-133a standard; RNA; XLA; 86 BP.
XX
AC MI0001455;
XX
DE Xenopus laevis miR-133a stem-loop
XX
RN [1]
RX PUBMED; 15642338.
RA Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, Minami N, Imai H;
RT "Stage-specific expression of microRNAs during Xenopus development";
RL FEBS Lett. 579:318-324(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0001350"
FT /product="xla-miR-133a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 86 BP; 23 A; 20 C; 18 G; 0 T; 25 other;
cagugcuuug cuaaagcugg uaaaauggaa ccaaaucacc ucuucaaugg auuugguccc 60
cuucaaccag cuguaggauu gcauug 86
//
ID zma-MIR156d standard; RNA; ZMA; 119 BP.
XX
AC MI0001456;
XX
DE Zea mays miR156d stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..35
FT /accession="MIMAT0001351"
FT /product="zma-miR156d-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000178"
FT miRNA 80..101
FT /accession="MIMAT0015124"
FT /product="zma-miR156d-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 119 BP; 24 A; 35 C; 31 G; 0 T; 29 other;
aggcucucga gagauugaca gaagagagug agcacacggc gcgacgaacg acauagcaug 60
uaugccgucc ucgccgcgug cucacuucuc uuucugucag ccucuuucuc ucgauggcu 119
//
ID zma-MIR156f standard; RNA; ZMA; 167 BP.
XX
AC MI0001457;
XX
DE Zea mays miR156f stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..40
FT /accession="MIMAT0001352"
FT /product="zma-miR156f-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000179"
FT miRNA 131..152
FT /accession="MIMAT0015125"
FT /product="zma-miR156f-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 167 BP; 31 A; 48 C; 46 G; 0 T; 42 other;
uggcugcuag augguguggc ugacagaaga gagugagcac gcaucggcca gacugcaucu 60
auauacggcu gccccaaagc gacggaucga uggaugccua gccuaggccu aggcgcagcu 120
gcuguugcgu gcucacuucu cuuucuguca gcucucucuc ucauccu 167
//
ID zma-MIR156g standard; RNA; ZMA; 121 BP.
XX
AC MI0001458;
XX
DE Zea mays miR156g stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..23
FT /accession="MIMAT0001353"
FT /product="zma-miR156g-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000178"
FT miRNA 99..120
FT /accession="MIMAT0015126"
FT /product="zma-miR156g-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 121 BP; 25 A; 32 C; 35 G; 0 T; 29 other;
ggcugacaga agagagugag cacgcaucgg ccagacugca ucuauauacg gcugcuccug 60
gcgaauggau agaugccaag gcgcagcugc uguugcgugc ucacuucucu uucugucagc 120
u 121
//
ID zma-MIR156b standard; RNA; ZMA; 124 BP.
XX
AC MI0001459;
XX
DE Zea mays miR156b stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [3]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..40
FT /accession="MIMAT0001354"
FT /product="zma-miR156b-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT /similarity="MI0000183"
FT miRNA 86..106
FT /accession="MIMAT0015127"
FT /product="zma-miR156b-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 124 BP; 29 A; 28 C; 31 G; 0 T; 36 other;
agaugaguuu uuugaagguu ugacagaaga gagugagcac acacgguggu uucuuaccau 60
gagugucaug cuaggagcug ugcgugcuca cccucuaucu gucagucacu caucaagccc 120
aucu 124
//
ID zma-MIR156c standard; RNA; ZMA; 139 BP.
XX
AC MI0001460;
XX
DE Zea mays miR156c stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [3]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..40
FT /accession="MIMAT0001355"
FT /product="zma-miR156c"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT /similarity="MI0000182"
XX
SQ Sequence 139 BP; 34 A; 29 C; 38 G; 0 T; 38 other;
gguggaggag aggugaaagc ugacagaaga gagugagcac acauggugcc uuucuugcau 60
gauguaugau cgagagaguu caugcucgaa gcuaugcgug cucacuucuc ucuuugucag 120
ccauuagaac uccucuauc 139
//
ID zma-MIR156e standard; RNA; ZMA; 126 BP.
XX
AC MI0001461;
XX
DE Zea mays miR156e stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..39
FT /accession="MIMAT0001356"
FT /product="zma-miR156e-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000180"
FT miRNA 87..108
FT /accession="MIMAT0015128"
FT /product="zma-miR156e-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 126 BP; 17 A; 45 C; 46 G; 0 T; 18 other;
ccggcgggcg cgcgcgcggu gacagaagag agugagcaca cggccggugu gacggcaccg 60
gcgcggaugu gccgucgcgg ccgcgugcuc acugcucucu cugucauccg cuggcacacc 120
cucacg 126
//
ID zma-MIR156a standard; RNA; ZMA; 152 BP.
XX
AC MI0001462;
XX
DE Zea mays miR156a stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..37
FT /accession="MIMAT0001357"
FT /product="zma-miR156a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000179"
FT miRNA 114..135
FT /accession="MIMAT0015129"
FT /product="zma-miR156a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 152 BP; 31 A; 44 C; 42 G; 0 T; 35 other;
uucguuccgu ggcuaacuga cagaagagag ugagcacaca gcgggcagac ugcaucgauc 60
gaucugcauc cgagacggcg cacguacgaa ugaugaugca gcugcugcug cgugcucacu 120
ucucucucug ucaguccucu agcugcuacg gc 152
//
ID zma-MIR156h standard; RNA; ZMA; 115 BP.
XX
AC MI0001463;
XX
DE Zea mays miR156h stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..39
FT /accession="MIMAT0001358"
FT /product="zma-miR156h-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000179"
FT miRNA 78..99
FT /accession="MIMAT0015130"
FT /product="zma-miR156h-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 115 BP; 13 A; 40 C; 43 G; 0 T; 19 other;
cgggcucgcg cgcgcgcggu gacagaagag agugagcaca cggccgggcg ugacggcacg 60
ugccgucgcg gccgcgugcu cacugcucuu ucugucaucc gcugguccgg gccuc 115
//
ID zma-MIR156i standard; RNA; ZMA; 117 BP.
XX
AC MI0001464;
XX
DE Zea mays miR156i stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..32
FT /accession="MIMAT0001359"
FT /product="zma-miR156i-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000180"
FT miRNA 80..101
FT /accession="MIMAT0015131"
FT /product="zma-miR156i-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 117 BP; 18 A; 40 C; 41 G; 0 T; 18 other;
cgcggcgggc ggugacagaa gagagugagc acacggccgg gcggaacggc accggcggau 60
ggugccgucg cggacgcgug cucacugcuc uaucugucau ccacucucuc ccccgcu 117
//
ID zma-MIR160a standard; RNA; ZMA; 104 BP.
XX
AC MI0001465;
XX
DE Zea mays miR160a stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0001360"
FT /product="zma-miR160a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000192"
FT miRNA 77..97
FT /accession="MIMAT0015132"
FT /product="zma-miR160a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 104 BP; 18 A; 29 C; 32 G; 0 T; 25 other;
uugugugcgu gccuggcucc cuguaugcca cacauguagc gcccaaccca gaugyuaagg 60
uugccugcug uggguggcgu gcaaggggcc aagcaugcau ccau 104
//
ID zma-MIR160c standard; RNA; ZMA; 100 BP.
XX
AC MI0001466;
XX
DE Zea mays miR160c stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..27
FT /accession="MIMAT0001361"
FT /product="zma-miR160c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000192"
FT miRNA 76..96
FT /accession="MIMAT0015133"
FT /product="zma-miR160c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 100 BP; 22 A; 24 C; 29 G; 0 T; 25 other;
aggaugugcc uggcucccug uaugccacuc aucuagagca acgacagcuu gguaggguug 60
ccuauaagau ggauggcgug cauggugcca agcauaucuc 100
//
ID zma-MIR160d standard; RNA; ZMA; 142 BP.
XX
AC MI0001467;
XX
DE Zea mays miR160d stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001362"
FT /product="zma-miR160d-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000192"
FT miRNA 105..125
FT /accession="MIMAT0015134"
FT /product="zma-miR160d-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 142 BP; 25 A; 45 C; 40 G; 0 T; 32 other;
ggccaggggc gggaucgaua ugccuggcuc ccuguaugcc acucgcaugg cugccaacuc 60
aucaugcaua cacugcuagc uagucguugg cuccacugcg gauggcgugc guggagccaa 120
gcaugaccga ucaucuccuc cu 142
//
ID zma-MIR160b standard; RNA; ZMA; 121 BP.
XX
AC MI0001468;
XX
DE Zea mays miR160b stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [3]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001363"
FT /product="zma-miR160b-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT /similarity="MI0000192"
FT miRNA 83..103
FT /accession="MIMAT0015135"
FT /product="zma-miR160b-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 121 BP; 23 A; 32 C; 39 G; 0 T; 27 other;
cgaucggcuc gugucgugug ugccuggcuc ccuguaugcc acacauguag ccaacccgug 60
gcgugauugg augcuguggg uggcgugcaa ggagccaagc augcauaaca ggccaugauc 120
a 121
//
ID zma-MIR164a standard; RNA; ZMA; 152 BP.
XX
AC MI0001469;
XX
DE Zea mays miR164a stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0001364"
FT /product="zma-miR164a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000198"
FT miRNA 116..136
FT /accession="MIMAT0015136"
FT /product="zma-miR164a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 152 BP; 32 A; 45 C; 37 G; 0 T; 38 other;
cagugacaag gaccacgcug gagaagcagg gcacgugcau gcgcauacca uauagcuaga 60
cgauguucuc ucucgcuccg cucgaccaag cuucauguau ggauggguac gcacgcacgu 120
guucuccuuc uccaucgagg ucuuucucac uu 152
//
ID zma-MIR164d standard; RNA; ZMA; 216 BP.
XX
AC MI0001470;
XX
DE Zea mays miR164d stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..40
FT /accession="MIMAT0001365"
FT /product="zma-miR164d-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000198"
FT miRNA 178..197
FT /accession="MIMAT0015137"
FT /product="zma-miR164d-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 216 BP; 47 A; 63 C; 53 G; 0 T; 53 other;
ugagugagaa ggaccacgcu ggagaagcag ggcacgugca ugcacauacg ccauucucga 60
ucucuccucu ccaccacuac ugcaucuagc uaucuccaug gauggaugua cguagcucgg 120
acuggaucga ucggagaagc aauaagcuag cgagcucaug caugcuggcu gugcacgcac 180
guggucuccu ucuccaucac gguucuuucu cacuuc 216
//
ID zma-MIR164b standard; RNA; ZMA; 128 BP.
XX
AC MI0001471;
XX
DE Zea mays miR164b stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001366"
FT /product="zma-miR164b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000198"
FT miRNA 93..112
FT /accession="MIMAT0015138"
FT /product="zma-miR164b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 128 BP; 23 A; 29 C; 45 G; 0 T; 31 other;
uagacggugg cugugcgugg uggagaagca gggcacgugc auuaccaucc aaugccgccg 60
gguggguggg uggaauggau ggaugguucu ugaugugccc aucuucucca ccgagcacga 120
acugucuu 128
//
ID zma-MIR164c standard; RNA; ZMA; 270 BP.
XX
AC MI0001472;
XX
DE Zea mays miR164c stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..38
FT /accession="MIMAT0001367"
FT /product="zma-miR164c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000198"
FT miRNA 235..255
FT /accession="MIMAT0015139"
FT /product="zma-miR164c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 270 BP; 38 A; 93 C; 98 G; 0 T; 41 other;
uggcgaggug cgcgcggugg agaagcaggg cacgugcauu cuuuccgucg ccggccggcu 60
uggcagcggc cggcggcccg gcucucgcag ucacgcguac gucgccugag cggcgcgcgc 120
gagagagaga gacacggcag gucgucgccg gcgcggcuaa cuggugcagg ugcagcagcu 180
agcuucugaa acccagccag ccagccagcc ggccggccgg ccgaucgaug cgugcaugug 240
cccuucuucu ccaucgggca cgccucgccu 270
//
ID zma-MIR169a standard; RNA; ZMA; 130 BP.
XX
AC MI0001473;
XX
DE Zea mays miR169a stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001368"
FT /product="zma-miR169a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000212"
FT miRNA 92..112
FT /accession="MIMAT0015140"
FT /product="zma-miR169a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 130 BP; 20 A; 37 C; 38 G; 0 T; 35 other;
uaggcucggg gacuauggug cagccaagga ugacuugccg aucgauguga cgccucuuga 60
ucucgucguc gucagaucgu cgccgaucau cggcaaguug uucuuggcua caccguggcu 120
ccugcuccug 130
//
ID zma-MIR169b standard; RNA; ZMA; 156 BP.
XX
AC MI0001474;
XX
DE Zea mays miR169b stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001369"
FT /product="zma-miR169b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000212"
FT miRNA 118..138
FT /accession="MIMAT0015141"
FT /product="zma-miR169b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 156 BP; 30 A; 46 C; 39 G; 0 T; 41 other;
uaggcucggg gacuacggug cagccaagga ugacuugccg aucuaucguc gaucaacgag 60
cgacgccucu gaugucugau cucgacaucu aucgucguca gaccaucauc aucuaucggc 120
aaguuguucu uggcuacacc guggcuccug cuccug 156
//
ID zma-MIR167a standard; RNA; ZMA; 190 BP.
XX
AC MI0001475;
XX
DE Zea mays miR167a stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0001370"
FT /product="zma-miR167a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000209"
FT miRNA 151..172
FT /accession="MIMAT0015142"
FT /product="zma-miR167a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 190 BP; 35 A; 51 C; 49 G; 0 T; 55 other;
ugcucuugcg aaugagugaa gcugccagca ugaucuagcu cugauuuggu uggcaccaua 60
uuagcaggcg uccacgcaca gcuagacuag aguggccucg cgcgcucucg ucuggucugu 120
gucucgcuuu gugccugcaa aucguuguua gaucaugcau gacagccuca uuccuucaca 180
auucuggggc 190
//
ID zma-MIR167b standard; RNA; ZMA; 127 BP.
XX
AC MI0001476;
XX
DE Zea mays miR167b stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0001371"
FT /product="zma-miR167b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000208"
FT miRNA 88..110
FT /accession="MIMAT0015143"
FT /product="zma-miR167b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 127 BP; 28 A; 29 C; 36 G; 0 T; 34 other;
agugcccaag auaaagggug aagcugccag caugaucuaa cgacggcauu gcucugcugc 60
ugcagugagg cuugcgagug augguuagau caugcuguga caguuucacu cuuucccuuu 120
gggcaca 127
//
ID zma-MIR167d standard; RNA; ZMA; 133 BP.
XX
AC MI0001477;
XX
DE Zea mays miR167d stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0001372"
FT /product="zma-miR167d-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000209"
FT miRNA 93..115
FT /accession="MIMAT0015144"
FT /product="zma-miR167d-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 133 BP; 31 A; 35 C; 35 G; 0 T; 32 other;
ugcccaaggg aacgagugaa gcugccagca ugaucuagcu cugagugauc acccgaaaaa 60
gaacaauagu ucuagguggu caugccuugc uaggucaugc ugcugcagcc ucacuucuuc 120
ccgucguugg gca 133
//
ID zma-MIR167c standard; RNA; ZMA; 132 BP.
XX
AC MI0001478;
XX
DE Zea mays miR167c stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0001373"
FT /product="zma-miR167c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000209"
FT miRNA 92..114
FT /accession="MIMAT0015145"
FT /product="zma-miR167c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 132 BP; 29 A; 35 C; 39 G; 0 T; 29 other;
ugcccaaggg aacgagugaa gcugccagca ugaucuagcu cggagugauc acgcgaggag 60
aacaauagcu cgaggugguc augccuugcu agaucaugcu guggcagccu cacuucuucc 120
cguccuuggg ca 132
//
ID zma-MIR160e standard; RNA; ZMA; 94 BP.
XX
AC MI0001479;
XX
DE Zea mays miR160e stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0001374"
FT /product="zma-miR160e"
FT /evidence=not_experimental
FT /similarity="MI0000190"
XX
SQ Sequence 94 BP; 14 A; 35 C; 30 G; 0 T; 15 other;
agggaauaug ccuggcuccc uguaugccac ucgcacggcu accacacccc gguggccgcu 60
gcggcuggcg ugcgaggugc caagcauggc cccc 94
//
ID zma-MIR166a standard; RNA; ZMA; 213 BP.
XX
AC MI0001480;
XX
DE Zea mays miR166a stem-loop
XX
RN [1]
RX PUBMED; 14999285.
RA Juarez MT, Kui JS, Thomas J, Heller BA, Timmermans MC;
RT "microRNA-mediated repression of rolled leaf1 specifies maize leaf
RT polarity";
RL Nature. 428:84-88(2004).
XX
RN [2]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [3]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0015146"
FT /product="zma-miR166a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 189..209
FT /accession="MIMAT0001375"
FT /product="zma-miR166a-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT /similarity="MI0000202"
XX
SQ Sequence 213 BP; 25 A; 78 C; 43 G; 0 T; 67 other;
ugaggggaau guugucuggc ucggggccgc cgccgccgcu ccuuccuucu cuagucucuc 60
uucucuccua gcagcuacuc uucgcuuccu acuccuaucu cgaucccucu cuucuucuuc 120
uucuucuucu uccucuuccc cccucucuug gaucgagacc gagcggacgg agacgagugg 180
uguagaucuc ggaccaggcu ucauuccccc caa 213
//
ID zma-MIR162 standard; RNA; ZMA; 130 BP.
XX
AC MI0001481;
XX
DE Zea mays miR162 stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..23
FT /accession="MIMAT0015147"
FT /product="zma-miR162-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 110..129
FT /accession="MIMAT0001376"
FT /product="zma-miR162-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000195"
XX
SQ Sequence 130 BP; 22 A; 33 C; 39 G; 0 T; 36 other;
cugggcgcag ugguuuaucg aucucuuccu ugccuugugc ugguccggcc gggaguggug 60
guucaagcgu uuuauuguug cagcagcucg caaacaacgc gggaaucggu cgauaaaccu 120
cugcauccag 130
//
ID zma-MIR166h standard; RNA; ZMA; 76 BP.
XX
AC MI0001482;
XX
DE Zea mays miR166h stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..23
FT /accession="MIMAT0015148"
FT /product="zma-miR166h-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 56..75
FT /accession="MIMAT0001377"
FT /product="zma-miR166h-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000201"
XX
SQ Sequence 76 BP; 10 A; 28 C; 26 G; 0 T; 12 other;
ggggaaugac guccgguccg aacgagccac ggcugcugcu gcgccgccgc gggcuucgga 60
ccaggcuuca uucccc 76
//
ID zma-MIR166e standard; RNA; ZMA; 87 BP.
XX
AC MI0001483;
XX
DE Zea mays miR166e stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 67..86
FT /accession="MIMAT0001378"
FT /product="zma-miR166e"
FT /evidence=not_experimental
FT /similarity="MI0000207"
XX
SQ Sequence 87 BP; 17 A; 22 C; 24 G; 0 T; 24 other;
ggggaauguu gucuggcucg aggugcagaa acauacagau cucaucgguc uagguucuug 60
ucgaucucgg accaggcuuc auucccc 87
//
ID zma-MIR166i standard; RNA; ZMA; 83 BP.
XX
AC MI0001485;
XX
DE Zea mays miR166i stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..23
FT /accession="MIMAT0015149"
FT /product="zma-miR166i-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 63..82
FT /accession="MIMAT0001379"
FT /product="zma-miR166i-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000203"
XX
SQ Sequence 83 BP; 12 A; 27 C; 27 G; 0 T; 17 other;
ggggaauguc gucuggcgcg agaccguacc agacgacgug cucucucggu cgucggacgg 60
ucucggacca ggcuucauuc ccc 83
//
ID zma-MIR166f standard; RNA; ZMA; 78 BP.
XX
AC MI0001486;
XX
DE Zea mays miR166f stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 58..77
FT /accession="MIMAT0001380"
FT /product="zma-miR166f"
FT /evidence=not_experimental
FT /similarity="MI0000201"
XX
SQ Sequence 78 BP; 12 A; 29 C; 24 G; 0 T; 13 other;
ggggaaugac guccgguccg aacaagccac ggcugcugcu gcgcuaccgc cgcggcuucg 60
gaccaggcuu cauucccc 78
//
ID zma-MIR166g standard; RNA; ZMA; 126 BP.
XX
AC MI0001487;
XX
DE Zea mays miR166g stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..23
FT /accession="MIMAT0015150"
FT /product="zma-miR166g-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 106..125
FT /accession="MIMAT0001381"
FT /product="zma-miR166g-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000206"
XX
SQ Sequence 126 BP; 29 A; 33 C; 32 G; 0 T; 32 other;
ggggaauguu gucugguugg agaccuaaca ccrcgaauua aucauccaug ccauggaagc 60
agcauaugcc cgccugcauc uauccaugca ugauggugga agguuucgga ccaggcuuca 120
uucccc 126
//
ID zma-MIR166b standard; RNA; ZMA; 116 BP.
XX
AC MI0001488;
XX
DE Zea mays miR166b stem-loop
XX
RN [1]
RX PUBMED; 14999285.
RA Juarez MT, Kui JS, Thomas J, Heller BA, Timmermans MC;
RT "microRNA-mediated repression of rolled leaf1 specifies maize leaf
RT polarity";
RL Nature. 428:84-88(2004).
XX
RN [2]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [3]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..23
FT /accession="MIMAT0015151"
FT /product="zma-miR166b-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 96..115
FT /accession="MIMAT0001382"
FT /product="zma-miR166b-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT /similarity="MI0000199"
XX
SQ Sequence 116 BP; 20 A; 25 C; 27 G; 0 T; 44 other;
guggaauguu gucugguuca aggucuugcu wuccgauuug aggaugaucc augcuugcau 60
guguaguuuu uuuuguuccu cagaucuaca agaucucgga ccaggcuuca uucccc 116
//
ID zma-MIR166c standard; RNA; ZMA; 92 BP.
XX
AC MI0001489;
XX
DE Zea mays miR166c stem-loop
XX
RN [1]
RX PUBMED; 14999285.
RA Juarez MT, Kui JS, Thomas J, Heller BA, Timmermans MC;
RT "microRNA-mediated repression of rolled leaf1 specifies maize leaf
RT polarity";
RL Nature. 428:84-88(2004).
XX
RN [2]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [3]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..23
FT /accession="MIMAT0015152"
FT /product="zma-miR166c-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 72..91
FT /accession="MIMAT0001383"
FT /product="zma-miR166c-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT /similarity="MI0000206"
XX
SQ Sequence 92 BP; 16 A; 22 C; 28 G; 0 T; 26 other;
ggggaauguu gucuggcucg aggugcagaa acacgcagau cucaucgagg ucgucuuggu 60
uguuguugau cucggaccag gcuucauucc cc 92
//
ID zma-MIR166d standard; RNA; ZMA; 104 BP.
XX
AC MI0001490;
XX
DE Zea mays miR166d stem-loop
XX
RN [1]
RX PUBMED; 14999285.
RA Juarez MT, Kui JS, Thomas J, Heller BA, Timmermans MC;
RT "microRNA-mediated repression of rolled leaf1 specifies maize leaf
RT polarity";
RL Nature. 428:84-88(2004).
XX
RN [2]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [3]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..23
FT /accession="MIMAT0015153"
FT /product="zma-miR166d-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 84..103
FT /accession="MIMAT0001384"
FT /product="zma-miR166d-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT /similarity="MI0000202"
XX
SQ Sequence 104 BP; 18 A; 23 C; 25 G; 0 T; 38 other;
guggaauguu gucugguuca aggucuuuug cuuugugauc caucugugua gagcuucuaa 60
guauuccuug gaucugcaag aucucggacc aggcuucauu cccc 104
//
ID zma-MIR171a standard; RNA; ZMA; 99 BP.
XX
AC MI0001491;
XX
DE Zea mays miR171a stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..23
FT /accession="MIMAT0015154"
FT /product="zma-miR171a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 79..98
FT /accession="MIMAT0001385"
FT /product="zma-miR171a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000214"
XX
SQ Sequence 99 BP; 27 A; 15 C; 23 G; 0 T; 34 other;
gauauuggcg agguucaauc agaugaugua uuuuucuuau auauaaauuu gcaugcauga 60
aggugugaau ccagugucug auugagccgc gccaauauc 99
//
ID zma-MIR171b standard; RNA; ZMA; 85 BP.
XX
AC MI0001492;
XX
DE Zea mays miR171b stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..23
FT /accession="MIMAT0015155"
FT /product="zma-miR171b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 65..84
FT /accession="MIMAT0001386"
FT /product="zma-miR171b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000990"
XX
SQ Sequence 85 BP; 17 A; 24 C; 25 G; 0 T; 19 other;
cgggauauug gcgcgguuca aucagaaagc uugcgcucca ggcccgaggg gcuccacucu 60
uugauugagc cgugccaaua ucacg 85
//
ID zma-MIR172a standard; RNA; ZMA; 83 BP.
XX
AC MI0001493;
XX
DE Zea mays miR172a stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
FH Key Location/Qualifiers
FH
FT miRNA 63..82
FT /accession="MIMAT0001387"
FT /product="zma-miR172a"
FT /evidence=not_experimental
FT /similarity="MI0000216"
XX
SQ Sequence 83 BP; 25 A; 19 C; 17 G; 0 T; 22 other;
gcguggcauc aucaagauuc acaacccauc aauccgaacc acugauuugg aaugcaugya 60
ugagaaucuu gaugaugcug cau 83
//
ID zma-MIR172d standard; RNA; ZMA; 74 BP.
XX
AC MI0001494;
XX
DE Zea mays miR172d stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..23
FT /accession="MIMAT0015156"
FT /product="zma-miR172d-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 54..73
FT /accession="MIMAT0001388"
FT /product="zma-miR172d-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000215"
XX
SQ Sequence 74 BP; 20 A; 18 C; 17 G; 0 T; 19 other;
gugcagcacc aucaagauuc acauccccag cucgaucugu gcaugaugag augagaaucu 60
ugaugaugcu gcau 74
//
ID zma-MIR172b standard; RNA; ZMA; 126 BP.
XX
AC MI0001495;
XX
DE Zea mays miR172b stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..23
FT /accession="MIMAT0015157"
FT /product="zma-miR172b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 106..125
FT /accession="MIMAT0001389"
FT /product="zma-miR172b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000215"
XX
SQ Sequence 126 BP; 35 A; 26 C; 26 G; 0 T; 39 other;
gugcagcacc aucaagauuc acaucgucca acucaugcau caugcauaua ugcaucuuca 60
augaugcgug ccucgcaugu guguguauau auauaugaug agaugagaau cuugaugaug 120
cugcau 126
//
ID zma-MIR172c standard; RNA; ZMA; 123 BP.
XX
AC MI0001496;
XX
DE Zea mays miR172c stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..23
FT /accession="MIMAT0015158"
FT /product="zma-miR172c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 103..122
FT /accession="MIMAT0001390"
FT /product="zma-miR172c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000215"
XX
SQ Sequence 123 BP; 32 A; 30 C; 27 G; 0 T; 34 other;
gugcagcacc accaagauuc acauccaacu cucacgcauc uucagugaug caugcaugcu 60
cugugauguc ucgcagcagc uauaugcaua ugugaugaga ugagaaucuu gaugaugcug 120
cau 123
//
ID sbi-MIR166d standard; RNA; SBI; 87 BP.
XX
AC MI0001497;
XX
DE Sorghum bicolor miR166d stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15660154.
RA Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E,
RA Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA,
RA Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA,
RA Martienssen RA;
RT "Sorghum genome sequencing by methylation filtration";
RL PLoS Biol. 3:e13(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 67..86
FT /accession="MIMAT0001391"
FT /product="sbi-miR166d"
FT /evidence=not_experimental
FT /similarity="MI0000206"
XX
SQ Sequence 87 BP; 16 A; 20 C; 26 G; 0 T; 25 other;
ggggaauguu gucuggcucg aggugcagga acaugcagau cucaucgguc uagauuguug 60
uugaucucgg accaggcuuc auucccc 87
//
ID sbi-MIR166c standard; RNA; SBI; 94 BP.
XX
AC MI0001498;
XX
DE Sorghum bicolor miR166c stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15660154.
RA Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E,
RA Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA,
RA Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA,
RA Martienssen RA;
RT "Sorghum genome sequencing by methylation filtration";
RL PLoS Biol. 3:e13(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 74..93
FT /accession="MIMAT0001392"
FT /product="sbi-miR166c"
FT /evidence=not_experimental
FT /similarity="MI0000206"
XX
SQ Sequence 94 BP; 19 A; 23 C; 30 G; 0 T; 22 other;
ggggaauguu gucuggucgg agaccuaaca ccgcgaauca uccauggagc agcaugcaug 60
gugguggaug guuucggacc aggcuucauu cccc 94
//
ID sbi-MIR166b standard; RNA; SBI; 72 BP.
XX
AC MI0001499;
XX
DE Sorghum bicolor miR166b stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15660154.
RA Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E,
RA Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA,
RA Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA,
RA Martienssen RA;
RT "Sorghum genome sequencing by methylation filtration";
RL PLoS Biol. 3:e13(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..71
FT /accession="MIMAT0001393"
FT /product="sbi-miR166b"
FT /evidence=not_experimental
FT /similarity="MI0000201"
XX
SQ Sequence 72 BP; 12 A; 21 C; 27 G; 0 T; 12 other;
ggggaaugau guccgguccg aagacgcugu gcggcgaaag cggcggcggc uucggaccag 60
gcuucauucc cc 72
//
ID sbi-MIR166a standard; RNA; SBI; 108 BP.
XX
AC MI0001500;
XX
DE Sorghum bicolor miR166a stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15660154.
RA Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E,
RA Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA,
RA Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA,
RA Martienssen RA;
RT "Sorghum genome sequencing by methylation filtration";
RL PLoS Biol. 3:e13(2005).
XX
RN [3]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 88..107
FT /accession="MIMAT0001394"
FT /product="sbi-miR166a"
FT /evidence=not_experimental
FT /similarity="MI0000202"
XX
SQ Sequence 108 BP; 21 A; 20 C; 26 G; 0 T; 41 other;
guggaauguu gucugguuca aggucucgcu ugugauuuaa ggaugauuug ugcaugcgua 60
auuuuuauuc cuugaaucua ugagaucucg gaccaggcuu cauucccc 108
//
ID sbi-MIR172b standard; RNA; SBI; 170 BP.
XX
AC MI0001501;
XX
DE Sorghum bicolor miR172b stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15660154.
RA Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E,
RA Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA,
RA Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA,
RA Martienssen RA;
RT "Sorghum genome sequencing by methylation filtration";
RL PLoS Biol. 3:e13(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 150..169
FT /accession="MIMAT0001395"
FT /product="sbi-miR172b"
FT /evidence=not_experimental
FT /similarity="MI0000216"
XX
SQ Sequence 170 BP; 39 A; 38 C; 34 G; 0 T; 59 other;
gcguggcauc aucaagauuc acacacugcu ugcaaaugca uacaugcauc ucugccgccu 60
ucuuugccug ccauuaauag caguuuuacu acauguuuua gcugcugcug caucauauau 120
gccucuguga auauauaugu guaugugugg gaaucuugau gaugcugcau 170
//
ID sbi-MIR172c standard; RNA; SBI; 119 BP.
XX
AC MI0001502;
XX
DE Sorghum bicolor miR172c stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15660154.
RA Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E,
RA Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA,
RA Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA,
RA Martienssen RA;
RT "Sorghum genome sequencing by methylation filtration";
RL PLoS Biol. 3:e13(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 99..118
FT /accession="MIMAT0001396"
FT /product="sbi-miR172c"
FT /evidence=not_experimental
FT /similarity="MI0000216"
XX
SQ Sequence 119 BP; 31 A; 24 C; 28 G; 0 T; 36 other;
gugcagcacc aucaagauuc acauggucca acucaugcau cuucagugau gcucauguga 60
uggcucgcag uugcuauaua ugcauaugug augagaugag aaucuugaug augcugcau 119
//
ID sbi-MIR172a standard; RNA; SBI; 102 BP.
XX
AC MI0001503;
XX
DE Sorghum bicolor miR172a stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15660154.
RA Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E,
RA Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA,
RA Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA,
RA Martienssen RA;
RT "Sorghum genome sequencing by methylation filtration";
RL PLoS Biol. 3:e13(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 82..101
FT /accession="MIMAT0001397"
FT /product="sbi-miR172a"
FT /evidence=not_experimental
FT /similarity="MI0000215"
XX
SQ Sequence 102 BP; 31 A; 19 C; 21 G; 0 T; 31 other;
gugcagcauc aucaagauuc acauccagcu cauccucggu gauaugcuau auacauaaau 60
auaugcguau gugaugagau gagaaucuug augaugcugc au 102
//
ID sbi-MIR156a standard; RNA; SBI; 84 BP.
XX
AC MI0001504;
XX
DE Sorghum bicolor miR156a stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15660154.
RA Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E,
RA Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA,
RA Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA,
RA Martienssen RA;
RT "Sorghum genome sequencing by methylation filtration";
RL PLoS Biol. 3:e13(2005).
XX
RN [3]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..20
FT /accession="MIMAT0001398"
FT /product="sbi-miR156a"
FT /evidence=not_experimental
FT /similarity="MI0000178"
XX
SQ Sequence 84 BP; 19 A; 23 C; 22 G; 0 T; 20 other;
ugacagaaga gagugagcac acggcgcgac gaacggcaua auauguaugu cguccucgcc 60
gcgugcucac uucucuuucu guca 84
//
ID sbi-MIR156c standard; RNA; SBI; 95 BP.
XX
AC MI0001505;
XX
DE Sorghum bicolor miR156c stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15660154.
RA Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E,
RA Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA,
RA Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA,
RA Martienssen RA;
RT "Sorghum genome sequencing by methylation filtration";
RL PLoS Biol. 3:e13(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..20
FT /accession="MIMAT0001399"
FT /product="sbi-miR156c"
FT /evidence=not_experimental
FT /similarity="MI0000182"
XX
SQ Sequence 95 BP; 22 A; 21 C; 24 G; 0 T; 28 other;
ugacagaaga gagugagcac acauggugcc uuucuugcau gaugaaugag uggauucaug 60
cucgaagcua ugcgugcuca cuucucucuc uguca 95
//
ID sbi-MIR156b standard; RNA; SBI; 84 BP.
XX
AC MI0001506;
XX
DE Sorghum bicolor miR156b stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15660154.
RA Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E,
RA Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA,
RA Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA,
RA Martienssen RA;
RT "Sorghum genome sequencing by methylation filtration";
RL PLoS Biol. 3:e13(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..20
FT /accession="MIMAT0001400"
FT /product="sbi-miR156b"
FT /evidence=not_experimental
FT /similarity="MI0000183"
XX
SQ Sequence 84 BP; 18 A; 18 C; 25 G; 0 T; 23 other;
ugacagaaga gagugagcac acacgguggu uucuuagcau gagugccaug uugggagcug 60
ugcgugcuca cucucuaucu guca 84
//
ID sbi-MIR160d standard; RNA; SBI; 100 BP.
XX
AC MI0001507;
XX
DE Sorghum bicolor miR160d stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15660154.
RA Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E,
RA Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA,
RA Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA,
RA Martienssen RA;
RT "Sorghum genome sequencing by methylation filtration";
RL PLoS Biol. 3:e13(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..21
FT /accession="MIMAT0001401"
FT /product="sbi-miR160d"
FT /evidence=not_experimental
FT /similarity="MI0000190"
XX
SQ Sequence 100 BP; 20 A; 30 C; 26 G; 0 T; 24 other;
ugccuggcuc ccuguaugcc acucgcuuag cugccaacaa cucauacuac guuguuaacg 60
acguuggcuc uacugcggau ggcgugcgag gagccaagca 100
//
ID sbi-MIR160a standard; RNA; SBI; 84 BP.
XX
AC MI0001508;
XX
DE Sorghum bicolor miR160a stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15660154.
RA Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E,
RA Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA,
RA Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA,
RA Martienssen RA;
RT "Sorghum genome sequencing by methylation filtration";
RL PLoS Biol. 3:e13(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..21
FT /accession="MIMAT0001402"
FT /product="sbi-miR160a"
FT /evidence=not_experimental
FT /similarity="MI0000192"
XX
SQ Sequence 84 BP; 16 A; 25 C; 25 G; 0 T; 18 other;
ugccuggcuc ccuguaugcc acacauguag cccaacccau augcuaaggu ugccugcugu 60
ggguggcgug caaggggcca agca 84
//
ID sbi-MIR160c standard; RNA; SBI; 83 BP.
XX
AC MI0001509;
XX
DE Sorghum bicolor miR160c stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15660154.
RA Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E,
RA Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA,
RA Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA,
RA Martienssen RA;
RT "Sorghum genome sequencing by methylation filtration";
RL PLoS Biol. 3:e13(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..21
FT /accession="MIMAT0001403"
FT /product="sbi-miR160c"
FT /evidence=not_experimental
FT /similarity="MI0000190"
XX
SQ Sequence 83 BP; 17 A; 24 C; 20 G; 0 T; 22 other;
ugccuggcuc ccuguaugcc acucaucuag aucaacaacu accuaugguu gccuaugaug 60
guuggcgugc acggugccaa gca 83
//
ID sbi-MIR160b standard; RNA; SBI; 82 BP.
XX
AC MI0001510;
XX
DE Sorghum bicolor miR160b stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15660154.
RA Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E,
RA Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA,
RA Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA,
RA Martienssen RA;
RT "Sorghum genome sequencing by methylation filtration";
RL PLoS Biol. 3:e13(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..21
FT /accession="MIMAT0001404"
FT /product="sbi-miR160b"
FT /evidence=not_experimental
FT /similarity="MI0000192"
XX
SQ Sequence 82 BP; 15 A; 23 C; 27 G; 0 T; 17 other;
ugccuggcuc ccuguaugcc acacauguag cccaacccgu ggcgugauug gaugcugugg 60
guggcgugca aggagccaag ca 82
//
ID sbi-MIR160e standard; RNA; SBI; 95 BP.
XX
AC MI0001511;
XX
DE Sorghum bicolor miR160e stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15660154.
RA Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E,
RA Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA,
RA Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA,
RA Martienssen RA;
RT "Sorghum genome sequencing by methylation filtration";
RL PLoS Biol. 3:e13(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..21
FT /accession="MIMAT0001405"
FT /product="sbi-miR160e"
FT /evidence=not_experimental
FT /similarity="MI0000190"
XX
SQ Sequence 95 BP; 15 A; 34 C; 28 G; 0 T; 18 other;
ugccuggcuc ccuguaugcc acucgcacgg cuaccacccc aagaucaucg aucgaucucg 60
guggccgcug cggcuggcgu gcgaggugcc aagca 95
//
ID sbi-MIR164a standard; RNA; SBI; 126 BP.
XX
AC MI0001512;
XX
DE Sorghum bicolor miR164 stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15660154.
RA Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E,
RA Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA,
RA Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA,
RA Martienssen RA;
RT "Sorghum genome sequencing by methylation filtration";
RL PLoS Biol. 3:e13(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..21
FT /accession="MIMAT0001406"
FT /product="sbi-miR164a"
FT /evidence=not_experimental
FT /similarity="MI0000198"
XX
SQ Sequence 126 BP; 24 A; 41 C; 30 G; 0 T; 31 other;
uggagaagca gggcacgugc auuaccaucc aaugccgcca agcucgaucc uccucugagc 60
uugcuagcuc caucagcucg ccagccaugg cuggauggau gguucuucau gugcccaucu 120
ucucca 126
//
ID sbi-MIR167a standard; RNA; SBI; 96 BP.
XX
AC MI0001513;
XX
DE Sorghum bicolor miR167a stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15660154.
RA Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E,
RA Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA,
RA Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA,
RA Martienssen RA;
RT "Sorghum genome sequencing by methylation filtration";
RL PLoS Biol. 3:e13(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..21
FT /accession="MIMAT0001407"
FT /product="sbi-miR167a"
FT /evidence=not_experimental
FT /similarity="MI0000209"
XX
SQ Sequence 96 BP; 22 A; 25 C; 27 G; 0 T; 22 other;
ugaagcugcc agcaugaucu agcucugagu gaucacccga gaagaacaau aguucgaggu 60
ggucucgccu ugcuagguca ugcugcggca gccuca 96
//
ID sbi-MIR167b standard; RNA; SBI; 198 BP.
XX
AC MI0001514;
XX
DE Sorghum bicolor miR167b stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15660154.
RA Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E,
RA Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA,
RA Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA,
RA Martienssen RA;
RT "Sorghum genome sequencing by methylation filtration";
RL PLoS Biol. 3:e13(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..21
FT /accession="MIMAT0001408"
FT /product="sbi-miR167b"
FT /evidence=not_experimental
FT /similarity="MI0000208"
XX
SQ Sequence 198 BP; 34 A; 46 C; 58 G; 0 T; 60 other;
ugaagcugcc agcaugaucu aacaacggca uugcuccucc guguagcgcc cugugcuugc 60
uuuugcuugu cuccauggag aagacagcgg caaagcuuag cuuugcuucg cuuagcuugc 120
uggcuuuucg uaugggcugg cggcggguug cugcgugaag cuugcaagug augguuagau 180
caugcuguga caguuuca 198
//
ID sbi-MIR169b standard; RNA; SBI; 102 BP.
XX
AC MI0001515;
XX
DE Sorghum bicolor miR169b stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15660154.
RA Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E,
RA Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA,
RA Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA,
RA Martienssen RA;
RT "Sorghum genome sequencing by methylation filtration";
RL PLoS Biol. 3:e13(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..21
FT /accession="MIMAT0001409"
FT /product="sbi-miR169b"
FT /evidence=not_experimental
FT /similarity="MI0000976"
XX
SQ Sequence 102 BP; 23 A; 27 C; 25 G; 0 T; 27 other;
cagccaagga ugacuugccg gauaugugca ugcauauguu acaaggcagc auaugcaccc 60
uguuacaagc cugccuguuc uccggcaagu uguccuuggc ua 102
//
ID sbi-MIR169a standard; RNA; SBI; 91 BP.
XX
AC MI0001516;
XX
DE Sorghum bicolor miR169a stem-loop
XX
RN [1]
RA Maher C, Timmermans M, Stein L, Ware D;
RT "Identifying microRNAs in plant genomes";
RL Proc IEEE CSB :718-723(2004).
XX
RN [2]
RX PUBMED; 15660154.
RA Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E,
RA Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA,
RA Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA,
RA Martienssen RA;
RT "Sorghum genome sequencing by methylation filtration";
RL PLoS Biol. 3:e13(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..21
FT /accession="MIMAT0001410"
FT /product="sbi-miR169a"
FT /evidence=not_experimental
FT /similarity="MI0000976"
XX
SQ Sequence 91 BP; 20 A; 22 C; 21 G; 0 T; 28 other;
cagccaagga ugacuugccg aucgaucgau gcaaacuccu cugaugucug aucucaucag 60
auuaucguug ucggcaaguu guucuuggcu a 91
//
ID gga-mir-20b standard; RNA; GGA; 85 BP.
XX
AC MI0001517;
XX
DE Gallus gallus miR-20b stem-loop
XX
RN [1]
RX PUBMED; 15590942.
RA Hubbard SJ, Grafham DV, Beattie KJ, Overton IM, McLaren SR, Croning MD,
RA Boardman PE, Bonfield JK, Burnside J, Davies RM, Farrell ER, Francis MD,
RA Griffiths-Jones S, Humphray SJ, Hyland C, Scott CE, Tang H, Taylor RG,
RA Tickle C, Brown WR, Birney E, Rogers J, Wilson SA;
RT "Transcriptome analysis for the chicken based on 19,626 finished cDNA
RT sequences and 485,337 expressed sequence tags";
RL Genome Res. 15:174-183(2005).
XX
RN [2]
RX PUBMED; 18256158.
RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V;
RT "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
RT predominance of virus-encoded microRNAs";
RL J Virol. 82:4007-4015(2008).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 777891; MIR20B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0001411"
FT /product="gga-miR-20b-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000568"
FT miRNA 49..70
FT /accession="MIMAT0026551"
FT /product="gga-miR-20b-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 85 BP; 24 A; 15 C; 22 G; 0 T; 24 other;
cuagcaguau caaagugcuc auagugcagg uagcuuggca uuggaccuac uguaaugugg 60
gcacuuacag uacuguuaga uaaag 85
//
ID hsa-mir-18b standard; RNA; HSA; 71 BP.
XX
AC MI0001518;
XX
DE Homo sapiens miR-18b stem-loop
XX
RN [1]
RX PUBMED; 15944709.
RA O'Donnell KA, Wentzel EA, Zeller KI, Dang CV, Mendell JT;
RT "c-Myc-regulated microRNAs modulate E2F1 expression";
RL Nature. 435:839-843(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32025; MIR18B.
DR ENTREZGENE; 574033; MIR18B.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0001412"
FT /product="hsa-miR-18b-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0000072"
FT miRNA 49..70
FT /accession="MIMAT0004751"
FT /product="hsa-miR-18b-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 71 BP; 17 A; 16 C; 17 G; 0 T; 21 other;
uguguuaagg ugcaucuagu gcaguuagug aagcagcuua gaaucuacug cccuaaaugc 60
cccuucuggc a 71
//
ID hsa-mir-20b standard; RNA; HSA; 69 BP.
XX
AC MI0001519;
XX
DE Homo sapiens miR-20b stem-loop
XX
RN [1]
RX PUBMED; 15944709.
RA O'Donnell KA, Wentzel EA, Zeller KI, Dang CV, Mendell JT;
RT "c-Myc-regulated microRNAs modulate E2F1 expression";
RL Nature. 435:839-843(2005).
XX
RN [2]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [3]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 32024; MIR20B.
DR ENTREZGENE; 574032; MIR20B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0001413"
FT /product="hsa-miR-20b-5p"
FT /evidence=experimental
FT /experiment="array-cloned [2], cloned [3-5]"
FT /similarity="MI0000076"
FT miRNA 44..65
FT /accession="MIMAT0004752"
FT /product="hsa-miR-20b-3p"
FT /evidence=experimental
FT /experiment="cloned [4]"
XX
SQ Sequence 69 BP; 17 A; 14 C; 17 G; 0 T; 21 other;
aguaccaaag ugcucauagu gcagguaguu uuggcaugac ucuacuguag uaugggcacu 60
uccaguacu 69
//
ID oar-mir-431 standard; RNA; OAR; 91 BP.
XX
AC MI0001520;
XX
DE Ovis aries miR-431 stem-loop
XX
RN [1]
RX PUBMED; 15854907.
RA Davis E, Caiment F, Tordoir X, Cavaille J, Ferguson-Smith A, Cockett N,
RA Georges M, Charlier C;
RT "RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11
RT locus";
RL Curr Biol. 15:743-749(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0001414"
FT /product="oar-miR-431"
FT /evidence=experimental
FT /experiment="PCR [1]"
XX
SQ Sequence 91 BP; 18 A; 27 C; 29 G; 0 T; 17 other;
cguccugcga ggugucuugc aggccgucau gcaggccaca cugacggaaa cguugcaggu 60
cgucuugcag ggcgucucgc aagacgacac a 91
//
ID oar-mir-127 standard; RNA; OAR; 114 BP.
XX
AC MI0001521;
XX
DE Ovis aries miR-127 stem-loop
XX
RN [1]
RX PUBMED; 15854907.
RA Davis E, Caiment F, Tordoir X, Cavaille J, Ferguson-Smith A, Cockett N,
RA Georges M, Charlier C;
RT "RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11
RT locus";
RL Curr Biol. 15:743-749(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 58..80
FT /accession="MIMAT0001415"
FT /product="oar-miR-127"
FT /evidence=experimental
FT /experiment="PCR [1]"
XX
SQ Sequence 114 BP; 19 A; 31 C; 30 G; 0 T; 34 other;
gcuuugauca cugucuccag ccugcugaag cucagagggc ucugauucag aaagaucauc 60
ggauccgucu gagcuuggcu ggucggaagu cuccucaucu gcuuccuucg gguu 114
//
ID oar-mir-432 standard; RNA; OAR; 90 BP.
XX
AC MI0001522;
XX
DE Ovis aries miR-432 stem-loop
XX
RN [1]
RX PUBMED; 15854907.
RA Davis E, Caiment F, Tordoir X, Cavaille J, Ferguson-Smith A, Cockett N,
RA Georges M, Charlier C;
RT "RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11
RT locus";
RL Curr Biol. 15:743-749(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0001416"
FT /product="oar-miR-432"
FT /evidence=experimental
FT /experiment="PCR [1]"
XX
SQ Sequence 90 BP; 13 A; 23 C; 25 G; 0 T; 29 other;
gcaugacucc uccaagucuu ggaguagguc auugggugga uccuuuauuu cccuaugugg 60
gccacuggau ggcuccucca ugucuuggcg 90
//
ID oar-mir-136 standard; RNA; OAR; 92 BP.
XX
AC MI0001523;
XX
DE Ovis aries miR-136 stem-loop
XX
RN [1]
RX PUBMED; 15854907.
RA Davis E, Caiment F, Tordoir X, Cavaille J, Ferguson-Smith A, Cockett N,
RA Georges M, Charlier C;
RT "RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11
RT locus";
RL Curr Biol. 15:743-749(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0001417"
FT /product="oar-miR-136"
FT /evidence=experimental
FT /experiment="PCR [1]"
XX
SQ Sequence 92 BP; 19 A; 21 C; 21 G; 0 T; 31 other;
ucggaugagc ccucggagga cuccauuugu uuugaugaug gauucuuacg cuccaucauc 60
gucucaaaug agucuucaga ggguucuauc au 92
//
ID mmu-mir-431 standard; RNA; MMU; 91 BP.
XX
AC MI0001524;
XX
DE Mus musculus miR-431 stem-loop
XX
RN [1]
RX PUBMED; 15854907.
RA Davis E, Caiment F, Tordoir X, Cavaille J, Ferguson-Smith A, Cockett N,
RA Georges M, Charlier C;
RT "RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11
RT locus";
RL Curr Biol. 15:743-749(2005).
XX
RN [2]
RX PUBMED; 16566924.
RA Wheeler G, Ntounia-Fousara S, Granda B, Rathjen T, Dalmay T;
RT "Identification of new central nervous system specific mouse microRNAs";
RL FEBS Lett. 580:2195-2200(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619403; Mir431.
DR ENTREZGENE; 723866; Mir431.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0001418"
FT /product="mmu-miR-431-5p"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2-3], insitu [2], Northern
FT [2], Illumina [4-5]"
FT miRNA 56..77
FT /accession="MIMAT0004753"
FT /product="mmu-miR-431-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 91 BP; 16 A; 27 C; 28 G; 0 T; 20 other;
cguccugcga ggugucuugc aggccgucau gcaggccaca cugacgguaa cguugcaggu 60
cgucuugcag ggcuucucgc aagacgacau c 91
//
ID mmu-mir-433 standard; RNA; MMU; 124 BP.
XX
AC MI0001525;
XX
DE Mus musculus miR-433 stem-loop
XX
RN [1]
RX PUBMED; 15854907.
RA Davis E, Caiment F, Tordoir X, Cavaille J, Ferguson-Smith A, Cockett N,
RA Georges M, Charlier C;
RT "RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11
RT locus";
RL Curr Biol. 15:743-749(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619404; Mir433.
DR ENTREZGENE; 723937; Mir433.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0001419"
FT /product="mmu-miR-433-5p"
FT /evidence=experimental
FT /experiment="PCR [1], Illumina [3-4]"
FT miRNA 67..88
FT /accession="MIMAT0001420"
FT /product="mmu-miR-433-3p"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2], Illumina [3-4]"
XX
SQ Sequence 124 BP; 27 A; 31 C; 39 G; 0 T; 27 other;
ugcccgggga gaaguacggu gagccuguca uuauucagag aggcuagauc cucuguguug 60
agaaggauca ugaugggcuc cucgguguuc uccagguagc ggcaccacac caugaaggca 120
gccc 124
//
ID mmu-mir-434 standard; RNA; MMU; 94 BP.
XX
AC MI0001526;
XX
DE Mus musculus miR-434 stem-loop
XX
RN [1]
RX PUBMED; 15854907.
RA Davis E, Caiment F, Tordoir X, Cavaille J, Ferguson-Smith A, Cockett N,
RA Georges M, Charlier C;
RT "RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11
RT locus";
RL Curr Biol. 15:743-749(2005).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619405; Mir434.
DR ENTREZGENE; 723867; Mir434.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0001421"
FT /product="mmu-miR-434-5p"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2-3], Illumina [4-5]"
FT miRNA 60..81
FT /accession="MIMAT0001422"
FT /product="mmu-miR-434-3p"
FT /evidence=experimental
FT /experiment="PCR [1], cloned [2-3], Illumina [4-5]"
XX
SQ Sequence 94 BP; 22 A; 25 C; 18 G; 0 T; 29 other;
ucgacucugg guuugaacca aagcucgacu caugguuuga accauuacuu aauucguggu 60
uugaaccauc acucgacucc ugguucgaac cauc 94
//
ID dre-mir-430a-1 standard; RNA; DRE; 82 BP.
XX
AC MI0001527;
XX
DE Danio rerio miR-430a-1 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628850; mir430a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 17 A; 16 C; 24 G; 0 T; 25 other;
gucacuaucg gugcccucac aaaggcacug acuuggaugc ugcauguggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430b-1 standard; RNA; DRE; 81 BP.
XX
AC MI0001528;
XX
DE Danio rerio miR-430b-1 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628891; mir430b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 22 A; 12 C; 19 G; 0 T; 28 other;
caguugaggu caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430c-1 standard; RNA; DRE; 73 BP.
XX
AC MI0001529;
XX
DE Danio rerio miR-430c-1 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033785; mirn430c-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID sbi-MIR393a standard; RNA; SBI; 139 BP.
XX
AC MI0001530;
XX
DE Sorghum bicolor miR393 stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..40
FT /accession="MIMAT0001426"
FT /product="sbi-miR393a"
FT /evidence=not_experimental
FT /similarity="MI0001026"
XX
SQ Sequence 139 BP; 30 A; 38 C; 32 G; 0 T; 39 other;
acaaugccug gaggaagcau ccaaagggau cgcauugauc cgucacuccu uccauucuau 60
cauggguggu cgucgucuac aaggacuucg uucccgacgg aucaugcgau ccuuuuggag 120
gcuuccucua gacauuacu 139
//
ID sbi-MIR394a standard; RNA; SBI; 110 BP.
XX
AC MI0001531;
XX
DE Sorghum bicolor miR394a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..40
FT /accession="MIMAT0001427"
FT /product="sbi-miR394a"
FT /evidence=not_experimental
FT /similarity="MI0001027"
XX
SQ Sequence 110 BP; 20 A; 27 C; 26 G; 0 T; 37 other;
cuuuacauac ugagaguucc uuggcauucu guccaccucc uugcccaucg ucagauauau 60
guguugcuuu uggaggugga cauacugcca auggagcugu guaggccucu 110
//
ID sbi-MIR395b standard; RNA; SBI; 105 BP.
XX
AC MI0001533;
XX
DE Sorghum bicolor miR395b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 66..86
FT /accession="MIMAT0001429"
FT /product="sbi-miR395b"
FT /evidence=not_experimental
FT /similarity="MI0001036"
XX
SQ Sequence 105 BP; 21 A; 18 C; 29 G; 0 T; 37 other;
guuagguuug gugucccuag gaguucucug caagcacuuc acgaggcauc guuuugagag 60
cuuuugugaa guguuugggg gaacucuuag ugucacaaau cauuu 105
//
ID sbi-MIR395a standard; RNA; SBI; 150 BP.
XX
AC MI0001534;
XX
DE Sorghum bicolor miR395a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 111..131
FT /accession="MIMAT0001430"
FT /product="sbi-miR395a"
FT /evidence=not_experimental
FT /similarity="MI0001038"
XX
SQ Sequence 150 BP; 32 A; 29 C; 42 G; 0 T; 47 other;
gguugguugg uugucaccug gaguucucca caaacuacuu caguagcaac acacaccccu 60
aguuuaaugc accguguuug cauguuugug uggagcugug uguguacaua gugaaguguu 120
ugggggaacu cuggguggca aucagcaauu 150
//
ID sbi-MIR395d standard; RNA; SBI; 103 BP.
XX
AC MI0001536;
XX
DE Sorghum bicolor miR395d stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 64..84
FT /accession="MIMAT0001432"
FT /product="sbi-miR395d"
FT /evidence=not_experimental
FT /similarity="MI0001033"
XX
SQ Sequence 103 BP; 22 A; 21 C; 24 G; 0 T; 36 other;
ucaaguuugg uguccccagg aguucucugc aaacacuuca caaagcacuu uuuuagagcu 60
uuugugaagu guuuggggga acucuuggug ccacugauca uuu 103
//
ID sbi-MIR395e standard; RNA; SBI; 105 BP.
XX
AC MI0001537;
XX
DE Sorghum bicolor miR395e stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 66..86
FT /accession="MIMAT0001433"
FT /product="sbi-miR395e"
FT /evidence=not_experimental
FT /similarity="MI0001036"
XX
SQ Sequence 105 BP; 21 A; 21 C; 28 G; 0 T; 35 other;
auuagguuug guguccccgg gaguucucug caagcacuuc acgaggcacu auuuugagag 60
cuuuugugaa guguuugggg gaacucuuga ugccacuaac cauuu 105
//
ID sbi-MIR396b standard; RNA; SBI; 128 BP.
XX
AC MI0001538;
XX
DE Sorghum bicolor miR396b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001434"
FT /product="sbi-miR396b"
FT /evidence=not_experimental
FT /similarity="MI0001047"
XX
SQ Sequence 128 BP; 34 A; 29 C; 32 G; 0 T; 33 other;
agauggccuu cuuugugauc uuccacagcu uucuugaacu gcaucucuaa gaggagcagc 60
uugaacucuc uaccugcaug agcaggugca guucaauaaa gcugugggaa acugcagaga 120
gaggccaa 128
//
ID sbi-MIR396a standard; RNA; SBI; 125 BP.
XX
AC MI0001539;
XX
DE Sorghum bicolor miR396a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001435"
FT /product="sbi-miR396a"
FT /evidence=not_experimental
FT /similarity="MI0001013"
XX
SQ Sequence 125 BP; 30 A; 31 C; 31 G; 0 T; 33 other;
acauggcccu ccuugccguc uuccacagcu uucuugaacu gcaugcuggu agugcugugu 60
gcauccguuc caauauucca agaggcaguu caauaaagcu gugggaaauu gcagagagag 120
accag 125
//
ID sbi-MIR396c standard; RNA; SBI; 162 BP.
XX
AC MI0001540;
XX
DE Sorghum bicolor miR396c stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001436"
FT /product="sbi-miR396c"
FT /evidence=not_experimental
FT /similarity="MI0001048"
XX
SQ Sequence 162 BP; 37 A; 50 C; 24 G; 0 T; 51 other;
uucaagucca ugccaugccu uuccacagcu uucuugaacu ucuccuccuc cuccucucuc 60
uuagaagggu agcuuugaac aucucucucu cucucucucu cucucucucu cucucuccaa 120
agaaggucaa gaaagcugug ggaagaaaug acauaacaag ga 162
//
ID sbi-MIR399a standard; RNA; SBI; 136 BP.
XX
AC MI0001541;
XX
DE Sorghum bicolor miR399a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 97..117
FT /accession="MIMAT0001437"
FT /product="sbi-miR399a"
FT /evidence=not_experimental
FT /similarity="MI0001053"
XX
SQ Sequence 136 BP; 32 A; 36 C; 42 G; 0 T; 26 other;
ugccggcgcc ggcgaauuac ggggcaguuc gucuuuggca caaaggcacg uccagaacua 60
cucgaugagg gucacuugag cugaacugaa caugcgugcc aaaggagaau ugcccugcga 120
uucgcccgug cagaag 136
//
ID sbi-MIR399c standard; RNA; SBI; 130 BP.
XX
AC MI0001542;
XX
DE Sorghum bicolor miR399c stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 91..111
FT /accession="MIMAT0001438"
FT /product="sbi-miR399c"
FT /evidence=not_experimental
FT /similarity="MI0001055"
XX
SQ Sequence 130 BP; 37 A; 29 C; 32 G; 0 T; 32 other;
cauaugcuga gcaugaauua caggguacau cuccuuuggc acagaugcau gcagcagaau 60
gcauauaugc auaugcgaaa cugucgagcg ugccaaagga gaauugcccu gcgauucuag 120
gcucugcaau 130
//
ID sbi-MIR399d standard; RNA; SBI; 205 BP.
XX
AC MI0001543;
XX
DE Sorghum bicolor miR399d stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 166..186
FT /accession="MIMAT0001439"
FT /product="sbi-miR399d"
FT /evidence=not_experimental
FT /similarity="MI0001056"
XX
SQ Sequence 205 BP; 36 A; 58 C; 57 G; 0 T; 54 other;
gugcaggcug aagacaguug uaggcagcuc uccucuggca ggcggucauc gucgucguca 60
ucgacggcug guucuguguu cauccggauc caucgugcag ccgugcaugc augcaguaau 120
auucgguuac augcaugcau uaugcacgca cguacgucgu cguccugcca aaggagaguu 180
gcccugcgac ugucuccagc uuccu 205
//
ID sbi-MIR399e standard; RNA; SBI; 126 BP.
XX
AC MI0001544;
XX
DE Sorghum bicolor miR399e stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 87..107
FT /accession="MIMAT0001440"
FT /product="sbi-miR399e"
FT /evidence=not_experimental
FT /similarity="MI0001057"
XX
SQ Sequence 126 BP; 24 A; 35 C; 37 G; 0 T; 30 other;
acaugcgggg ccaugcauua ccgggugggu cuccucuggc aguaacuugg cuggucgccu 60
gguccaugau accugcgugc agacacugcc aaaggagauu ugcccagcaa ugcaguuuug 120
aguccc 126
//
ID sbi-MIR399f standard; RNA; SBI; 120 BP.
XX
AC MI0001545;
XX
DE Sorghum bicolor miR399f stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 81..101
FT /accession="MIMAT0001441"
FT /product="sbi-miR399f"
FT /evidence=not_experimental
FT /similarity="MI0001057"
XX
SQ Sequence 120 BP; 28 A; 26 C; 28 G; 0 T; 38 other;
cauaugcgag ucgaggauua ccgggccauu ucuccuuggg cagaguaauu gaauuuuacu 60
uugcuggauc cgguuugcuc ugccaaagga gauuugccca gcaauccaca uuuguaauau 120
//
ID sbi-MIR399b standard; RNA; SBI; 121 BP.
XX
AC MI0001546;
XX
DE Sorghum bicolor miR399b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 82..102
FT /accession="MIMAT0001442"
FT /product="sbi-miR399b"
FT /evidence=not_experimental
FT /similarity="MI0001061"
XX
SQ Sequence 121 BP; 27 A; 33 C; 32 G; 0 T; 29 other;
uagcucaggg ugagaaucac agugcagcuc uccucuggca ugaaggcuga gagagucaug 60
agcaguuuuc uggccuuucc cugccaaagg agagcugccc ugccauucau uagcccugca 120
a 121
//
ID sbi-MIR399g standard; RNA; SBI; 125 BP.
XX
AC MI0001547;
XX
DE Sorghum bicolor miR399g stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 86..106
FT /accession="MIMAT0001443"
FT /product="sbi-miR399g"
FT /evidence=not_experimental
FT /similarity="MI0001063"
XX
SQ Sequence 125 BP; 24 A; 41 C; 30 G; 0 T; 30 other;
ccagaugugc acuugcauug cugggcaacu ucuccuuugg cagaugcgca augugcuccg 60
acccuggggc uucuuccgcg ccuacugcca aaggaaauuu gccccggaau ucaccugcac 120
agcca 125
//
ID sbi-MIR156d standard; RNA; SBI; 125 BP.
XX
AC MI0001548;
XX
DE Sorghum bicolor miR156d stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001444"
FT /product="sbi-miR156d"
FT /evidence=not_experimental
FT /similarity="MI0001090"
XX
SQ Sequence 125 BP; 30 A; 38 C; 37 G; 0 T; 20 other;
uggaccucug gagugaguga ugacagaaga gagagagcac aacccagcac cagcgaggag 60
aagccucgcu ucugcgaggg ccgugugcuc ucugcucuca cugucaucgc cgacaggcca 120
cccaa 125
//
ID sbi-MIR164b standard; RNA; SBI; 111 BP.
XX
AC MI0001549;
XX
DE Sorghum bicolor miR164b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001445"
FT /product="sbi-miR164b"
FT /evidence=not_experimental
FT /similarity="MI0001104"
XX
SQ Sequence 111 BP; 17 A; 37 C; 36 G; 0 T; 21 other;
gaggggcgag caaaccgugc uggagaagca gggcacgugc ucgucgucgc ugcaugcgug 60
gucgucgucg cagcacgugc gcuccuucuc caacauggcu ucucgccccc a 111
//
ID sbi-MIR166e standard; RNA; SBI; 151 BP.
XX
AC MI0001550;
XX
DE Sorghum bicolor miR166e stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 112..132
FT /accession="MIMAT0001446"
FT /product="sbi-miR166e"
FT /evidence=not_experimental
FT /similarity="MI0001108"
XX
SQ Sequence 151 BP; 36 A; 32 C; 36 G; 0 T; 47 other;
caaguugaag guuagguuaa ugggguuguu gucugguuca aggucgccac agcagacaaa 60
gcccauuuug cuuagcaugc agcauggguu uaucucuauu gaugaucgau cucggaccag 120
gcuucaaucc cuuuaacuag caucugcaua u 151
//
ID sbi-MIR167d standard; RNA; SBI; 148 BP.
XX
AC MI0001551;
XX
DE Sorghum bicolor miR167d stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001447"
FT /product="sbi-miR167d"
FT /evidence=not_experimental
FT /similarity="MI0001109"
XX
SQ Sequence 148 BP; 36 A; 32 C; 39 G; 0 T; 41 other;
guggugcauc cucuaguagc ugaagcugcc agcaugaucu gaugagguga gguuuauuug 60
cuaguugguc acaggcuaac agcaugaugg cccaacaaau caacgaucag aucaugcugu 120
gcaguuucau cugcucgugg augcacau 148
//
ID sbi-MIR167f standard; RNA; SBI; 179 BP.
XX
AC MI0001552;
XX
DE Sorghum bicolor miR167f stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001448"
FT /product="sbi-miR167f"
FT /evidence=not_experimental
FT /similarity="MI0001109"
XX
SQ Sequence 179 BP; 46 A; 37 C; 40 G; 0 T; 56 other;
uccggugcac uagaggugga ugaagcugcc agcaugaucu gagaaacuag ugcuugaucc 60
uuuuacugau uuccaucuag ccugcaucua uauauauacc uugaugcaug aaucaugguc 120
ugaugauagu uaagcgagau cagaucgucu ggcaguuuca ucuucuuaug gcagcacaa 179
//
ID sbi-MIR167g standard; RNA; SBI; 123 BP.
XX
AC MI0001553;
XX
DE Sorghum bicolor miR167g stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001449"
FT /product="sbi-miR167g"
FT /evidence=not_experimental
FT /similarity="MI0001109"
XX
SQ Sequence 123 BP; 30 A; 29 C; 27 G; 0 T; 37 other;
auuugugcac cuuaagcagc ugaagcugcc agcaugaucu gaucuuaauu ucuuuuacug 60
gcaaacuucg gaugccuaag aucagaucgu gcugcgcagu uucaccugcu aauuggagca 120
cag 123
//
ID sbi-MIR167e standard; RNA; SBI; 179 BP.
XX
AC MI0001554;
XX
DE Sorghum bicolor miR167e stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001450"
FT /product="sbi-miR167e"
FT /evidence=not_experimental
FT /similarity="MI0001111"
XX
SQ Sequence 179 BP; 50 A; 30 C; 47 G; 0 T; 52 other;
aguggugcac cacaaguugg ugaagcugcc agcaugaucu gaugucuuua uauauauuaa 60
uuaccucuga uuucucccug acuguuaugg aucgaugaau ucagauauga ggggaaggaa 120
gaaagaggaa uaaugagcau caggucaugc uguaguuuca uccgcuggug ggagcacau 179
//
ID sbi-MIR167c standard; RNA; SBI; 131 BP.
XX
AC MI0001555;
XX
DE Sorghum bicolor miR167c stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..40
FT /accession="MIMAT0001451"
FT /product="sbi-miR167c"
FT /evidence=not_experimental
FT /similarity="MI0001114"
XX
SQ Sequence 131 BP; 23 A; 39 C; 40 G; 0 T; 29 other;
cuuugcuggu gugagagguu gaagcugcca gcaugaucug guggccggcc ggccggcguc 60
ucucaagugc gcucggaucg gagacgcguc gccagaucau guugcagcuu cacucucucg 120
caaccaccaa a 131
//
ID sbi-MIR168 standard; RNA; SBI; 106 BP.
XX
AC MI0001556;
XX
DE Sorghum bicolor miR168 stem-loop
XX
RN [1]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001452"
FT /product="sbi-miR168"
FT /evidence=not_experimental
FT /similarity="MI0001115"
XX
SQ Sequence 106 BP; 15 A; 40 C; 37 G; 0 T; 14 other;
gccgccgcgc cgccucgggc ucgcuuggug cagaucggga ccugccgccg ugcucggacg 60
ggacagaucc cgccuugcac caagugaauc cgagccggag cagccg 106
//
ID sbi-MIR169c standard; RNA; SBI; 126 BP.
XX
AC MI0001557;
XX
DE Sorghum bicolor miR169c stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001453"
FT /product="sbi-miR169c"
FT /evidence=not_experimental
FT /similarity="MI0001123"
XX
SQ Sequence 126 BP; 16 A; 32 C; 43 G; 0 T; 35 other;
uggcgagagc cugccuuugg uagccaagga ugacuugccu acacggccuu gcgaguuccg 60
guugcauggc caguucaguu ggguuugugg gcggucaccu uggcuagccu gaguggcucu 120
ugccug 126
//
ID sbi-MIR169d standard; RNA; SBI; 172 BP.
XX
AC MI0001558;
XX
DE Sorghum bicolor miR169d stem-loop
XX
RN [1]
RX PUBMED; 22747909.
RA Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M,
RA Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC;
RT "Computational identification and analysis of novel sugarcane microRNAs";
RL BMC Genomics. 13:290(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 43..62
FT /accession="MIMAT0001454"
FT /product="sbi-miR169d-5p"
FT /evidence=not_experimental
FT miRNA 111..130
FT /accession="MIMAT0026431"
FT /product="sbi-miR169d-3p"
FT /evidence=not_experimental
XX
SQ Sequence 172 BP; 27 A; 41 C; 57 G; 0 T; 47 other;
gaagaagagg ggccuugcau gguggcgaga gccugccuuu gguagccaag gaugacuugc 60
cuacauggca uugcgaguuc cgguugcaug gccaguucag cugaguuugu gggcggucac 120
cuuggcuagc cugaguggcu cuugccuguc auggaaggcc ucuucuucug uc 172
//
ID sbi-MIR169f standard; RNA; SBI; 148 BP.
XX
AC MI0001560;
XX
DE Sorghum bicolor miR169f stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001456"
FT /product="sbi-miR169f"
FT /evidence=not_experimental
FT /similarity="MI0001125"
XX
SQ Sequence 148 BP; 19 A; 46 C; 45 G; 0 T; 38 other;
cgaugagagc acugcucugg uagccaagga ugacuugccu guggccucca cuccaccugc 60
ggcaggaggc ucuucuucug cgcgcgcgug uguguguggu ugucgaucgc aggcagucuc 120
cuuggcuagc cucagcggcu cucauccu 148
//
ID sbi-MIR169g standard; RNA; SBI; 152 BP.
XX
AC MI0001561;
XX
DE Sorghum bicolor miR169g stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001457"
FT /product="sbi-miR169g"
FT /evidence=not_experimental
FT /similarity="MI0000984"
XX
SQ Sequence 152 BP; 25 A; 39 C; 40 G; 0 T; 48 other;
gcgauaagag ucugcccaga uagccaagga ugacuugccu guggccucuu ggcuuggcuu 60
gagagcuuau uaacucugug cacguuuaau uugcucuucu uguggccucg aucacaggca 120
gucuccuugg cuaguccggg cggcucuuau cu 152
//
ID sbi-MIR169i standard; RNA; SBI; 169 BP.
XX
AC MI0001563;
XX
DE Sorghum bicolor miR169i stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001459"
FT /product="sbi-miR169i"
FT /evidence=not_experimental
FT /similarity="MI0001130"
XX
SQ Sequence 169 BP; 36 A; 41 C; 46 G; 0 T; 46 other;
gauggagagc ccccuuuugc uagccaagaa ugacuugccu augcaugccc ucuguuggca 60
auuccuccag ccauggagau ugcacaaggu gaauuuuugc ggcauagaug auggaugcaa 120
uguggcugca ugggcagguc uucuuggcua gccagagugc ucucaucca 169
//
ID sbi-MIR171b standard; RNA; SBI; 132 BP.
XX
AC MI0001564;
XX
DE Sorghum bicolor miR171b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 93..113
FT /accession="MIMAT0001460"
FT /product="sbi-miR171b"
FT /evidence=not_experimental
FT /similarity="MI0001133"
XX
SQ Sequence 132 BP; 24 A; 37 C; 45 G; 0 T; 26 other;
auggccgccg cgcgcgacgg gguauuggcg cgguucaauu cgagagcucg agcccuagac 60
uagacgccag ggagagaggg ggcucugcuc ucugauugag ccgugccaau aucacguccc 120
gcuugaaugg cu 132
//
ID sbi-MIR171d standard; RNA; SBI; 153 BP.
XX
AC MI0001565;
XX
DE Sorghum bicolor miR171d stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 114..134
FT /accession="MIMAT0001461"
FT /product="sbi-miR171d"
FT /evidence=not_experimental
FT /similarity="MI0001135"
XX
SQ Sequence 153 BP; 33 A; 39 C; 32 G; 0 T; 49 other;
auaauggaau aguagcuaug auguuggcuc ggcucacuca gaccaccucu ccgauccuca 60
gcucgugucc auugcgacau cgaucaugua uauaugucgc uggucguggu uucugauuga 120
gccgugccaa uaucucagua cucuuccaua uau 153
//
ID sbi-MIR171a standard; RNA; SBI; 161 BP.
XX
AC MI0001566;
XX
DE Sorghum bicolor miR171a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 122..142
FT /accession="MIMAT0001462"
FT /product="sbi-miR171a"
FT /evidence=not_experimental
FT /similarity="MI0001137"
XX
SQ Sequence 161 BP; 34 A; 35 C; 45 G; 0 T; 47 other;
uugguuggcu gagagagugc gauguuggca ugguucaauc aaaucaucgc ccggcaaggu 60
gacuuaaauu uugcgcuuuc gaucgaucga ggugcaggga gguguuucca ggcaccgugu 120
uugauugagc cgugccaaua ucacaaccuu cucuagccua u 161
//
ID sbi-MIR171c standard; RNA; SBI; 109 BP.
XX
AC MI0001567;
XX
DE Sorghum bicolor miR171c stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 70..90
FT /accession="MIMAT0001463"
FT /product="sbi-miR171c"
FT /evidence=not_experimental
FT /similarity="MI0001138"
XX
SQ Sequence 109 BP; 30 A; 29 C; 24 G; 0 T; 26 other;
agaacgagac gacauggcau gguauugacu uggcucaucu cucauccaca gcaaacuuca 60
caagugccug aggugagccg agccaauauc acuucauguc aucuagcgu 109
//
ID sbi-MIR172e standard; RNA; SBI; 115 BP.
XX
AC MI0001568;
XX
DE Sorghum bicolor miR172e stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 76..96
FT /accession="MIMAT0001464"
FT /product="sbi-miR172e"
FT /evidence=not_experimental
FT /similarity="MI0001141"
XX
SQ Sequence 115 BP; 24 A; 31 C; 38 G; 0 T; 22 other;
ucggagccga cucucugcag gugcagcagc aucaagguuc gccagcagca agcgaucgau 60
cgaggcgugu gugugugaau cuugaugaug cugcaccagc aaugagccgg ccggc 115
//
ID sbi-MIR166f standard; RNA; SBI; 139 BP.
XX
AC MI0001569;
XX
DE Sorghum bicolor miR166f stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 100..120
FT /accession="MIMAT0001465"
FT /product="sbi-miR166f"
FT /evidence=not_experimental
FT /similarity="MI0001143"
XX
SQ Sequence 139 BP; 22 A; 36 C; 46 G; 0 T; 35 other;
ccuuggucau ggggguuugu ggggaauguu ggcuggcucg aggcauccgc guccuggcuu 60
gcagaucguu uugccugcua ccggaaagau cgagaggcgu cggaccaggc uucauuccuc 120
gcaaaccggu gcauccaug 139
//
ID sbi-MIR171e standard; RNA; SBI; 124 BP.
XX
AC MI0001570;
XX
DE Sorghum bicolor miR171e stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 85..105
FT /accession="MIMAT0001466"
FT /product="sbi-miR171e"
FT /evidence=not_experimental
FT /similarity="MI0001147"
XX
SQ Sequence 124 BP; 26 A; 24 C; 33 G; 0 T; 41 other;
aggaggaaga agacgacaug gcgugguauu guuucggcuc auguccuucu ugcuucgagu 60
cugucgucgg auuuuggaug ugaugugagc cgaaccaaua ucacucaugu auucuucauu 120
cuga 124
//
ID sbi-MIR159a standard; RNA; SBI; 226 BP.
XX
AC MI0001572;
XX
DE Sorghum bicolor miR159 stem-loop
XX
RN [1]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 204..224
FT /accession="MIMAT0001468"
FT /product="sbi-miR159a"
FT /evidence=not_experimental
FT /similarity="MI0001092"
XX
SQ Sequence 226 BP; 41 A; 55 C; 62 G; 0 T; 68 other;
agcgaagcuc cuaucauucc aaugaagggc ccuuuucaug ggugguuccg cugcucguuc 60
augguuccca cuauccuauc ucaucaugua uguguguaug uacucuagag ggcccgagaa 120
gagauucaug uggucgucag ucuuugagau aggcuugugg uuugcaugac cgaggagcug 180
caccgucccc uugcuggccg cucuuuggau ugaagggagc ucugca 226
//
ID sbi-MIR319a standard; RNA; SBI; 249 BP.
XX
AC MI0001573;
XX
DE Sorghum bicolor miR319 stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 191..210
FT /accession="MIMAT0001469"
FT /product="sbi-miR319a"
FT /evidence=not_experimental
FT /similarity="MI0001099"
XX
SQ Sequence 249 BP; 55 A; 67 C; 68 G; 0 T; 59 other;
cugccgccau gguugugaua uggccggaug gaagagagcg uccuucaguc cacucagggg 60
cggugcuagg gucgaauuag cugccgacuc auucacccac augccaagca aacggccaug 120
gaaacgagcu agcuuugcag augagugaau gaagcgggag guaaaagcuu cgaucucgca 180
ccaucuuugc uuggacugaa gggugcuccc uccuccccuc cuuaauuguu uacuuuaccc 240
auggcgcag 249
//
ID ame-bantam standard; RNA; AME; 87 BP.
XX
AC MI0001574;
XX
DE Apis mellifera bantam stem-loop
XX
RN [1]
RX PUBMED; 17543122.
RA Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM,
RA Samanta MP, Miller J, Elsik CG;
RT "Computational and transcriptional evidence for microRNAs in the honey bee
RT genome";
RL Genome Biol. 8:R97(2007).
XX
RN [2]
RX PUBMED; 22409512.
RA Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green
RA PJ, Zhang W, Robinson GE, Ben-Shahar Y;
RT "Behavioral plasticity in honey bees is associated with differences in
RT brain microRNA transcriptome";
RL Genes Brain Behav. 11:660-670(2012).
XX
DR ENTREZGENE; 732515; bantam.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..72
FT /accession="MIMAT0001470"
FT /product="ame-bantam-3p"
FT /evidence=experimental
FT /experiment="RTPCR [1], Illumina [2]"
FT /similarity="MI0000387"
XX
SQ Sequence 87 BP; 29 A; 11 C; 19 G; 0 T; 28 other;
ucgaaaacga aacugguuuu cacaaugauu ugacagauag auucgauucu gagaucauug 60
ugaaagcuga uuuuguugaa aagucga 87
//
ID ame-mir-1-1 standard; RNA; AME; 83 BP.
XX
AC MI0001575;
XX
DE Apis mellifera miR-1-1 stem-loop
XX
RN [1]
RX PUBMED; 17543122.
RA Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM,
RA Samanta MP, Miller J, Elsik CG;
RT "Computational and transcriptional evidence for microRNAs in the honey bee
RT genome";
RL Genome Biol. 8:R97(2007).
XX
RN [2]
RX PUBMED; 22409512.
RA Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green
RA PJ, Zhang W, Robinson GE, Ben-Shahar Y;
RT "Behavioral plasticity in honey bees is associated with differences in
RT brain microRNA transcriptome";
RL Genes Brain Behav. 11:660-670(2012).
XX
DR ENTREZGENE; 732491; Mir1-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..73
FT /accession="MIMAT0001471"
FT /product="ame-miR-1-3p"
FT /evidence=experimental
FT /experiment="array [1], RTPCR [1], Illumina [2]"
FT /similarity="MI0000116"
XX
SQ Sequence 83 BP; 16 A; 20 C; 26 G; 0 T; 21 other;
ccgggcgaug cuguuccgug cuuccuuacu ucccauagug gaugcgacgu auggaaugua 60
aagaaguaug gagcugcgcc cgg 83
//
ID ame-mir-12 standard; RNA; AME; 83 BP.
XX
AC MI0001576;
XX
DE Apis mellifera miR-12 stem-loop
XX
RN [1]
RX PUBMED; 20491979.
RA Behura SK, Whitfield CW;
RT "Correlated expression patterns of microRNA genes with age-dependent
RT behavioural changes in honeybee";
RL Insect Mol Biol. 19:431-439(2010).
XX
RN [2]
RX PUBMED; 22409512.
RA Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green
RA PJ, Zhang W, Robinson GE, Ben-Shahar Y;
RT "Behavioral plasticity in honey bees is associated with differences in
RT brain microRNA transcriptome";
RL Genes Brain Behav. 11:660-670(2012).
XX
DR ENTREZGENE; 732492; Mir12.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0001472"
FT /product="ame-miR-12-5p"
FT /evidence=experimental
FT /experiment="RTPCR [1], Illumina [2]"
FT /similarity="MI0000132"
XX
SQ Sequence 83 BP; 22 A; 14 C; 19 G; 0 T; 28 other;
aagacauggg ugugaguauu acaucaggua cuggugugau auucagacaa ccaguacuug 60
uguuauacuu acgcucaugu cuu 83
//
ID ame-mir-124 standard; RNA; AME; 77 BP.
XX
AC MI0001577;
XX
DE Apis mellifera miR-124 stem-loop
XX
RN [1]
RX PUBMED; 17543122.
RA Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM,
RA Samanta MP, Miller J, Elsik CG;
RT "Computational and transcriptional evidence for microRNAs in the honey bee
RT genome";
RL Genome Biol. 8:R97(2007).
XX
RN [2]
RX PUBMED; 20491979.
RA Behura SK, Whitfield CW;
RT "Correlated expression patterns of microRNA genes with age-dependent
RT behavioural changes in honeybee";
RL Insect Mol Biol. 19:431-439(2010).
XX
RN [3]
RX PUBMED; 22409512.
RA Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green
RA PJ, Zhang W, Robinson GE, Ben-Shahar Y;
RT "Behavioral plasticity in honey bees is associated with differences in
RT brain microRNA transcriptome";
RL Genes Brain Behav. 11:660-670(2012).
XX
RN [4]
RX PUBMED; 26853694.
RA Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs
RA MD, Cristino AS, Pinheiro DG, Simoes ZL;
RT "MicroRNA signatures characterizing caste-independent ovarian activity in
RT queen and worker honeybees (Apis mellifera L.)";
RL Insect Mol Biol. 25:216-226(2016).
XX
DR ENTREZGENE; 732493; Mir124.
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..73
FT /accession="MIMAT0001473"
FT /product="ame-miR-124-3p"
FT /evidence=experimental
FT /experiment="array [1], RTPCR [1-2], Illumina [3-4]"
FT /similarity="MI0000373"
XX
SQ Sequence 77 BP; 17 A; 21 C; 19 G; 0 T; 20 other;
ugcuccuugc guucacugcg ggcuuccaug ugccaacuuu ucaaaauuca uaaggcacgc 60
ggugaaugcc aagagcg 77
//
ID ame-mir-125 standard; RNA; AME; 107 BP.
XX
AC MI0001578;
XX
DE Apis mellifera miR-125 stem-loop
XX
RN [1]
RX PUBMED; 17543122.
RA Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM,
RA Samanta MP, Miller J, Elsik CG;
RT "Computational and transcriptional evidence for microRNAs in the honey bee
RT genome";
RL Genome Biol. 8:R97(2007).
XX
RN [2]
RX PUBMED; 20491979.
RA Behura SK, Whitfield CW;
RT "Correlated expression patterns of microRNA genes with age-dependent
RT behavioural changes in honeybee";
RL Insect Mol Biol. 19:431-439(2010).
XX
RN [3]
RX PUBMED; 22409512.
RA Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green
RA PJ, Zhang W, Robinson GE, Ben-Shahar Y;
RT "Behavioral plasticity in honey bees is associated with differences in
RT brain microRNA transcriptome";
RL Genes Brain Behav. 11:660-670(2012).
XX
DR ENTREZGENE; 732494; Mir125.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0001474"
FT /product="ame-miR-125-5p"
FT /evidence=experimental
FT /experiment="array [1], RTPCR [2], Illumina [3]"
FT /similarity="MI0000417"
XX
SQ Sequence 107 BP; 18 A; 32 C; 29 G; 0 T; 28 other;
guaaagccug ccgcgucgcc gguccccuga gacccuaacu ugugacgucg cgaccgauau 60
cucacaggcu agauucucug guauuggcga ugagugcugc cuuuugc 107
//
ID ame-mir-133 standard; RNA; AME; 89 BP.
XX
AC MI0001579;
XX
DE Apis mellifera miR-133 stem-loop
XX
RN [1]
RX PUBMED; 20491979.
RA Behura SK, Whitfield CW;
RT "Correlated expression patterns of microRNA genes with age-dependent
RT behavioural changes in honeybee";
RL Insect Mol Biol. 19:431-439(2010).
XX
RN [2]
RX PUBMED; 22409512.
RA Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green
RA PJ, Zhang W, Robinson GE, Ben-Shahar Y;
RT "Behavioral plasticity in honey bees is associated with differences in
RT brain microRNA transcriptome";
RL Genes Brain Behav. 11:660-670(2012).
XX
RN [3]
RX PUBMED; 26853694.
RA Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs
RA MD, Cristino AS, Pinheiro DG, Simoes ZL;
RT "MicroRNA signatures characterizing caste-independent ovarian activity in
RT queen and worker honeybees (Apis mellifera L.)";
RL Insect Mol Biol. 25:216-226(2016).
XX
DR ENTREZGENE; 732495; Mir133.
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..78
FT /accession="MIMAT0001475"
FT /product="ame-miR-133-3p"
FT /evidence=experimental
FT /experiment="RTPCR [1], Illumina [2-3]"
FT /similarity="MI0000362"
XX
SQ Sequence 89 BP; 24 A; 19 C; 19 G; 0 T; 27 other;
uaauguuaag cuuagcuggu ugaacacggg ucaaauauau cgcacgauug acgcauuugg 60
uccccuucaa ccagcuguag uugacauua 89
//
ID ame-mir-184 standard; RNA; AME; 92 BP.
XX
AC MI0001580;
XX
DE Apis mellifera miR-184 stem-loop
XX
RN [1]
RX PUBMED; 17543122.
RA Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM,
RA Samanta MP, Miller J, Elsik CG;
RT "Computational and transcriptional evidence for microRNAs in the honey bee
RT genome";
RL Genome Biol. 8:R97(2007).
XX
RN [2]
RX PUBMED; 20491979.
RA Behura SK, Whitfield CW;
RT "Correlated expression patterns of microRNA genes with age-dependent
RT behavioural changes in honeybee";
RL Insect Mol Biol. 19:431-439(2010).
XX
RN [3]
RX PUBMED; 22409512.
RA Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green
RA PJ, Zhang W, Robinson GE, Ben-Shahar Y;
RT "Behavioral plasticity in honey bees is associated with differences in
RT brain microRNA transcriptome";
RL Genes Brain Behav. 11:660-670(2012).
XX
DR ENTREZGENE; 732496; Mir184.
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..77
FT /accession="MIMAT0001476"
FT /product="ame-miR-184-3p"
FT /evidence=experimental
FT /experiment="array [1], RTPCR [2], Illumina [3]"
FT /similarity="MI0000354"
XX
SQ Sequence 92 BP; 23 A; 23 C; 25 G; 0 T; 21 other;
uucgugccca aagccccuua ucauucuccu guccggugua gaauuguuag acgacuggac 60
ggagaacuga uaagggcccg agggucacag aa 92
//
ID ame-mir-210 standard; RNA; AME; 85 BP.
XX
AC MI0001581;
XX
DE Apis mellifera miR-210 stem-loop
XX
RN [1]
RX PUBMED; 20491979.
RA Behura SK, Whitfield CW;
RT "Correlated expression patterns of microRNA genes with age-dependent
RT behavioural changes in honeybee";
RL Insect Mol Biol. 19:431-439(2010).
XX
RN [2]
RX PUBMED; 22409512.
RA Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green
RA PJ, Zhang W, Robinson GE, Ben-Shahar Y;
RT "Behavioral plasticity in honey bees is associated with differences in
RT brain microRNA transcriptome";
RL Genes Brain Behav. 11:660-670(2012).
XX
RN [3]
RX PUBMED; 26853694.
RA Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs
RA MD, Cristino AS, Pinheiro DG, Simoes ZL;
RT "MicroRNA signatures characterizing caste-independent ovarian activity in
RT queen and worker honeybees (Apis mellifera L.)";
RL Insect Mol Biol. 25:216-226(2016).
XX
DR ENTREZGENE; 732497; Mir210.
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..71
FT /accession="MIMAT0001477"
FT /product="ame-miR-210-3p"
FT /evidence=experimental
FT /experiment="RTPCR [1], Illumina [2-3]"
FT /similarity="MI0000376"
XX
SQ Sequence 85 BP; 20 A; 20 C; 24 G; 0 T; 21 other;
uggacccuaa ugcagcugcu ggccacugca caagauuaga cauaagacuc uugugcgugu 60
gacagcggcu augauggggu uucca 85
//
ID ame-mir-219 standard; RNA; AME; 102 BP.
XX
AC MI0001582;
XX
DE Apis mellifera miR-219 stem-loop
XX
RN [1]
RX PUBMED; 20491979.
RA Behura SK, Whitfield CW;
RT "Correlated expression patterns of microRNA genes with age-dependent
RT behavioural changes in honeybee";
RL Insect Mol Biol. 19:431-439(2010).
XX
RN [2]
RX PUBMED; 22409512.
RA Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green
RA PJ, Zhang W, Robinson GE, Ben-Shahar Y;
RT "Behavioral plasticity in honey bees is associated with differences in
RT brain microRNA transcriptome";
RL Genes Brain Behav. 11:660-670(2012).
XX
DR ENTREZGENE; 732498; Mir219.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0001478"
FT /product="ame-miR-219-5p"
FT /evidence=experimental
FT /experiment="RTPCR [1], Illumina [2]"
FT /similarity="MI0000358"
XX
SQ Sequence 102 BP; 31 A; 20 C; 25 G; 0 T; 26 other;
aauugaaugu cucaggcaau gauuguccaa acgcaauucu ugucuaaacg guacgaaauc 60
aagaauugug uggggacauc agcgcucgag gugcgauuca ac 102
//
ID ame-mir-263a standard; RNA; AME; 91 BP.
XX
AC MI0001583;
XX
DE Apis mellifera miR-263 stem-loop
XX
RN [1]
RX PUBMED; 17543122.
RA Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM,
RA Samanta MP, Miller J, Elsik CG;
RT "Computational and transcriptional evidence for microRNAs in the honey bee
RT genome";
RL Genome Biol. 8:R97(2007).
XX
RN [2]
RX PUBMED; 20491979.
RA Behura SK, Whitfield CW;
RT "Correlated expression patterns of microRNA genes with age-dependent
RT behavioural changes in honeybee";
RL Insect Mol Biol. 19:431-439(2010).
XX
RN [3]
RX PUBMED; 22409512.
RA Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green
RA PJ, Zhang W, Robinson GE, Ben-Shahar Y;
RT "Behavioral plasticity in honey bees is associated with differences in
RT brain microRNA transcriptome";
RL Genes Brain Behav. 11:660-670(2012).
XX
DR ENTREZGENE; 732499; Mir263.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..36
FT /accession="MIMAT0001479"
FT /product="ame-miR-263a-5p"
FT /evidence=experimental
FT /experiment="array [1], RTPCR [2], Illumina [3]"
FT /similarity="MI0000343"
XX
SQ Sequence 91 BP; 22 A; 22 C; 28 G; 0 T; 19 other;
agcuuggacu cuguaaaugg cacuggaaga auucacgggg gauuuaagaa acgggcccgu 60
ggagcucccg ugucauacac agcguccggc u 91
//
ID ame-mir-276 standard; RNA; AME; 84 BP.
XX
AC MI0001584;
XX
DE Apis mellifera miR-276 stem-loop
XX
RN [1]
RX PUBMED; 20491979.
RA Behura SK, Whitfield CW;
RT "Correlated expression patterns of microRNA genes with age-dependent
RT behavioural changes in honeybee";
RL Insect Mol Biol. 19:431-439(2010).
XX
RN [2]
RX PUBMED; 22409512.
RA Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green
RA PJ, Zhang W, Robinson GE, Ben-Shahar Y;
RT "Behavioral plasticity in honey bees is associated with differences in
RT brain microRNA transcriptome";
RL Genes Brain Behav. 11:660-670(2012).
XX
DR ENTREZGENE; 732500; Mir276.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..73
FT /accession="MIMAT0001480"
FT /product="ame-miR-276-3p"
FT /evidence=experimental
FT /experiment="RTPCR [1], Illumina [2]"
FT /similarity="MI0000359"
XX
SQ Sequence 84 BP; 21 A; 17 C; 24 G; 0 T; 22 other;
ugguagagau ccagcagcga gguauagagu uccuacguag uguucagaaa guaggaacuu 60
cauaccgugc ucuuggacuu gccg 84
//
ID ame-mir-277 standard; RNA; AME; 84 BP.
XX
AC MI0001585;
XX
DE Apis mellifera miR-277 stem-loop
XX
RN [1]
RX PUBMED; 20491979.
RA Behura SK, Whitfield CW;
RT "Correlated expression patterns of microRNA genes with age-dependent
RT behavioural changes in honeybee";
RL Insect Mol Biol. 19:431-439(2010).
XX
RN [2]
RX PUBMED; 22409512.
RA Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green
RA PJ, Zhang W, Robinson GE, Ben-Shahar Y;
RT "Behavioral plasticity in honey bees is associated with differences in
RT brain microRNA transcriptome";
RL Genes Brain Behav. 11:660-670(2012).
XX
RN [3]
RX PUBMED; 26853694.
RA Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs
RA MD, Cristino AS, Pinheiro DG, Simoes ZL;
RT "MicroRNA signatures characterizing caste-independent ovarian activity in
RT queen and worker honeybees (Apis mellifera L.)";
RL Insect Mol Biol. 25:216-226(2016).
XX
DR ENTREZGENE; 732501; Mir277.
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..73
FT /accession="MIMAT0001481"
FT /product="ame-miR-277-3p"
FT /evidence=experimental
FT /experiment="RTPCR [1], Illumina [2-3]"
FT /similarity="MI0000360"
XX
SQ Sequence 84 BP; 16 A; 23 C; 23 G; 0 T; 22 other;
ggcaguuggg gcucgugcca gaugcgcguu uacacgggcc cugaauacug uaaaugcacu 60
aucugguacg acaucucucc uguc 84
//
ID ame-mir-278 standard; RNA; AME; 92 BP.
XX
AC MI0001586;
XX
DE Apis mellifera miR-278 stem-loop
XX
RN [1]
RX PUBMED; 17543122.
RA Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM,
RA Samanta MP, Miller J, Elsik CG;
RT "Computational and transcriptional evidence for microRNAs in the honey bee
RT genome";
RL Genome Biol. 8:R97(2007).
XX
RN [2]
RX PUBMED; 22409512.
RA Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green
RA PJ, Zhang W, Robinson GE, Ben-Shahar Y;
RT "Behavioral plasticity in honey bees is associated with differences in
RT brain microRNA transcriptome";
RL Genes Brain Behav. 11:660-670(2012).
XX
RN [3]
RX PUBMED; 26853694.
RA Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs
RA MD, Cristino AS, Pinheiro DG, Simoes ZL;
RT "MicroRNA signatures characterizing caste-independent ovarian activity in
RT queen and worker honeybees (Apis mellifera L.)";
RL Insect Mol Biol. 25:216-226(2016).
XX
DR ENTREZGENE; 732502; Mir278.
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..78
FT /accession="MIMAT0001482"
FT /product="ame-miR-278-3p"
FT /evidence=experimental
FT /experiment="RTPCR [1], Illumina [2-3]"
FT /similarity="MI0000361"
XX
SQ Sequence 92 BP; 19 A; 18 C; 27 G; 0 T; 28 other;
ucacgaguag uguguccgga ugaggucuuc aucgaccgug auuuaauuuc auaaggucgg 60
ugggacuuuc guccguuugc aagacucgag ga 92
//
ID ame-mir-281 standard; RNA; AME; 103 BP.
XX
AC MI0001587;
XX
DE Apis mellifera miR-281 stem-loop
XX
RN [1]
RX PUBMED; 22409512.
RA Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green
RA PJ, Zhang W, Robinson GE, Ben-Shahar Y;
RT "Behavioral plasticity in honey bees is associated with differences in
RT brain microRNA transcriptome";
RL Genes Brain Behav. 11:660-670(2012).
XX
RN [2]
RX PUBMED; 26853694.
RA Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs
RA MD, Cristino AS, Pinheiro DG, Simoes ZL;
RT "MicroRNA signatures characterizing caste-independent ovarian activity in
RT queen and worker honeybees (Apis mellifera L.)";
RL Insect Mol Biol. 25:216-226(2016).
XX
DR ENTREZGENE; 732503; Mir281.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..83
FT /accession="MIMAT0001483"
FT /product="ame-miR-281-3p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT /similarity="MI0000366"
XX
SQ Sequence 103 BP; 29 A; 22 C; 25 G; 0 T; 27 other;
cgacgaaagg cgcgcgcuau aaagagagcu auccaucgac aguaugguua uaauagacac 60
ugucauggag uugcucucuu uguagacacu gcuauguuca acg 103
//
ID ame-mir-282 standard; RNA; AME; 92 BP.
XX
AC MI0001588;
XX
DE Apis mellifera miR-282 stem-loop
XX
RN [1]
RX PUBMED; 17543122.
RA Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM,
RA Samanta MP, Miller J, Elsik CG;
RT "Computational and transcriptional evidence for microRNAs in the honey bee
RT genome";
RL Genome Biol. 8:R97(2007).
XX
RN [2]
RX PUBMED; 22409512.
RA Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green
RA PJ, Zhang W, Robinson GE, Ben-Shahar Y;
RT "Behavioral plasticity in honey bees is associated with differences in
RT brain microRNA transcriptome";
RL Genes Brain Behav. 11:660-670(2012).
XX
RN [3]
RX PUBMED; 26853694.
RA Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs
RA MD, Cristino AS, Pinheiro DG, Simoes ZL;
RT "MicroRNA signatures characterizing caste-independent ovarian activity in
RT queen and worker honeybees (Apis mellifera L.)";
RL Insect Mol Biol. 25:216-226(2016).
XX
DR ENTREZGENE; 732504; Mir282.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..42
FT /accession="MIMAT0001484"
FT /product="ame-miR-282-5p"
FT /evidence=experimental
FT /experiment="array [1], Illumina [2-3]"
FT /similarity="MI0000367"
XX
SQ Sequence 92 BP; 25 A; 17 C; 24 G; 0 T; 26 other;
ggacagagua acuugauuua gccucuccua ggcuuugucu guauauaaag aacggagaca 60
uagccuagaa uagguuaggu cagggcucgu uc 92
//
ID ame-mir-2-1 standard; RNA; AME; 89 BP.
XX
AC MI0001589;
XX
DE Apis mellifera miR-2-1 stem-loop
XX
RN [1]
RX PUBMED; 17543122.
RA Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM,
RA Samanta MP, Miller J, Elsik CG;
RT "Computational and transcriptional evidence for microRNAs in the honey bee
RT genome";
RL Genome Biol. 8:R97(2007).
XX
RN [2]
RX PUBMED; 20491979.
RA Behura SK, Whitfield CW;
RT "Correlated expression patterns of microRNA genes with age-dependent
RT behavioural changes in honeybee";
RL Insect Mol Biol. 19:431-439(2010).
XX
RN [3]
RX PUBMED; 22409512.
RA Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green
RA PJ, Zhang W, Robinson GE, Ben-Shahar Y;
RT "Behavioral plasticity in honey bees is associated with differences in
RT brain microRNA transcriptome";
RL Genes Brain Behav. 11:660-670(2012).
XX
DR ENTREZGENE; 732505; Mir2-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..76
FT /accession="MIMAT0001485"
FT /product="ame-miR-2-3p"
FT /evidence=experimental
FT /experiment="RTPCR [1-2], Illumina [3]"
FT /similarity="MI0000118"
XX
SQ Sequence 89 BP; 17 A; 22 C; 28 G; 0 T; 22 other;
ggcgcgugug caccgcucac aaagugguug ugauaugcug auacgagcgu ucauaucaca 60
gccagcuuug augagcgugg cgucgcguc 89
//
ID ame-mir-2-2 standard; RNA; AME; 84 BP.
XX
AC MI0001590;
XX
DE Apis mellifera miR-2-2 stem-loop
XX
RN [1]
RX PUBMED; 17543122.
RA Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM,
RA Samanta MP, Miller J, Elsik CG;
RT "Computational and transcriptional evidence for microRNAs in the honey bee
RT genome";
RL Genome Biol. 8:R97(2007).
XX
RN [2]
RX PUBMED; 22409512.
RA Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green
RA PJ, Zhang W, Robinson GE, Ben-Shahar Y;
RT "Behavioral plasticity in honey bees is associated with differences in
RT brain microRNA transcriptome";
RL Genes Brain Behav. 11:660-670(2012).
XX
DR ENTREZGENE; 732506; Mir2-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..72
FT /accession="MIMAT0001485"
FT /product="ame-miR-2-3p"
FT /evidence=experimental
FT /experiment="RTPCR [1], Illumina [2]"
FT /similarity="MI0000118"
XX
SQ Sequence 84 BP; 17 A; 19 C; 25 G; 0 T; 23 other;
ucgacuguuc cucccaucag agugguugug augugguaac uuggacucgu aucacagcca 60
gcuuugauga gcggaacggu gcga 84
//
ID ame-mir-305 standard; RNA; AME; 90 BP.
XX
AC MI0001591;
XX
DE Apis mellifera miR-305 stem-loop
XX
RN [1]
RX PUBMED; 17543122.
RA Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM,
RA Samanta MP, Miller J, Elsik CG;
RT "Computational and transcriptional evidence for microRNAs in the honey bee
RT genome";
RL Genome Biol. 8:R97(2007).
XX
RN [2]
RX PUBMED; 22409512.
RA Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green
RA PJ, Zhang W, Robinson GE, Ben-Shahar Y;
RT "Behavioral plasticity in honey bees is associated with differences in
RT brain microRNA transcriptome";
RL Genes Brain Behav. 11:660-670(2012).
XX
DR ENTREZGENE; 732507; Mir305.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0001486"
FT /product="ame-miR-305-5p"
FT /evidence=experimental
FT /experiment="array [1], Illumina [2]"
FT /similarity="MI0000412"
XX
SQ Sequence 90 BP; 18 A; 22 C; 24 G; 0 T; 26 other;
ggaggcugca uguuaauugu acuucaucag gugcucuggu gaacucgaua cccggcaccu 60
guuggagcgc aauucauaug acugugcccu 90
//
ID ame-mir-315 standard; RNA; AME; 82 BP.
XX
AC MI0001592;
XX
DE Apis mellifera miR-315 stem-loop
XX
RN [1]
RX PUBMED; 22409512.
RA Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green
RA PJ, Zhang W, Robinson GE, Ben-Shahar Y;
RT "Behavioral plasticity in honey bees is associated with differences in
RT brain microRNA transcriptome";
RL Genes Brain Behav. 11:660-670(2012).
XX
RN [2]
RX PUBMED; 26853694.
RA Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs
RA MD, Cristino AS, Pinheiro DG, Simoes ZL;
RT "MicroRNA signatures characterizing caste-independent ovarian activity in
RT queen and worker honeybees (Apis mellifera L.)";
RL Insect Mol Biol. 25:216-226(2016).
XX
DR ENTREZGENE; 732508; Mir315.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0001487"
FT /product="ame-miR-315-5p"
FT /evidence=experimental
FT /experiment="Illumina [1-2]"
FT /similarity="MI0000427"
XX
SQ Sequence 82 BP; 21 A; 13 C; 18 G; 0 T; 30 other;
gcucuuuaug cuuuugauug uugcucagaa agccuugauu augauauugg cuuucgggca 60
auaaucauaa ucacgaaagg gu 82
//
ID ame-mir-317 standard; RNA; AME; 90 BP.
XX
AC MI0001593;
XX
DE Apis mellifera miR-317 stem-loop
XX
RN [1]
RX PUBMED; 17543122.
RA Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM,
RA Samanta MP, Miller J, Elsik CG;
RT "Computational and transcriptional evidence for microRNAs in the honey bee
RT genome";
RL Genome Biol. 8:R97(2007).
XX
RN [2]
RX PUBMED; 22409512.
RA Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green
RA PJ, Zhang W, Robinson GE, Ben-Shahar Y;
RT "Behavioral plasticity in honey bees is associated with differences in
RT brain microRNA transcriptome";
RL Genes Brain Behav. 11:660-670(2012).
XX
DR ENTREZGENE; 732509; Mir317.
XX
FH Key Location/Qualifiers
FH
FT miRNA 55..79
FT /accession="MIMAT0001488"
FT /product="ame-miR-317-3p"
FT /evidence=experimental
FT /experiment="array [1], Illumina [2]"
FT /similarity="MI0000429"
XX
SQ Sequence 90 BP; 18 A; 20 C; 31 G; 0 T; 21 other;
gcucucggag aacagggagc cacucugcgu ucacucggug gguaaugaag cgggugaaca 60
cagcuggugg uaucucaguu uucugagggc 90
//
ID ame-mir-7 standard; RNA; AME; 87 BP.
XX
AC MI0001594;
XX
DE Apis mellifera miR-7 stem-loop
XX
RN [1]
RX PUBMED; 17543122.
RA Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM,
RA Samanta MP, Miller J, Elsik CG;
RT "Computational and transcriptional evidence for microRNAs in the honey bee
RT genome";
RL Genome Biol. 8:R97(2007).
XX
RN [2]
RX PUBMED; 20491979.
RA Behura SK, Whitfield CW;
RT "Correlated expression patterns of microRNA genes with age-dependent
RT behavioural changes in honeybee";
RL Insect Mol Biol. 19:431-439(2010).
XX
RN [3]
RX PUBMED; 22409512.
RA Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green
RA PJ, Zhang W, Robinson GE, Ben-Shahar Y;
RT "Behavioral plasticity in honey bees is associated with differences in
RT brain microRNA transcriptome";
RL Genes Brain Behav. 11:660-670(2012).
XX
RN [4]
RX PUBMED; 26853694.
RA Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs
RA MD, Cristino AS, Pinheiro DG, Simoes ZL;
RT "MicroRNA signatures characterizing caste-independent ovarian activity in
RT queen and worker honeybees (Apis mellifera L.)";
RL Insect Mol Biol. 25:216-226(2016).
XX
DR ENTREZGENE; 732510; Mir7.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0001489"
FT /product="ame-miR-7-5p"
FT /evidence=experimental
FT /experiment="RTPCR [1-2], Illumina [3-4]"
FT /similarity="MI0000127"
XX
SQ Sequence 87 BP; 24 A; 19 C; 19 G; 0 T; 25 other;
cgagcgccgu ugcauggaag acuagugauu uuguuguucu acuuucgaua uaacaaggaa 60
ucacuaauca uccuacaaag gcgcucg 87
//
ID ame-mir-8 standard; RNA; AME; 85 BP.
XX
AC MI0001595;
XX
DE Apis mellifera miR-8 stem-loop
XX
RN [1]
RX PUBMED; 20807255.
RA Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F;
RT "Next-generation small RNA sequencing for microRNAs profiling in the honey
RT bee Apis mellifera";
RL Insect Mol Biol. 19:799-805(2010).
XX
RN [2]
RX PUBMED; 22409512.
RA Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green
RA PJ, Zhang W, Robinson GE, Ben-Shahar Y;
RT "Behavioral plasticity in honey bees is associated with differences in
RT brain microRNA transcriptome";
RL Genes Brain Behav. 11:660-670(2012).
XX
DR ENTREZGENE; 732511; Mir8.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..74
FT /accession="MIMAT0001490"
FT /product="ame-miR-8-3p"
FT /evidence=experimental
FT /experiment="SOLID [1], Illumina [2]"
FT /similarity="MI0000128"
XX
SQ Sequence 85 BP; 22 A; 17 C; 20 G; 0 T; 26 other;
ggaguaucug uucacaucuu accgggcagc auuagauuga aguugaccuu cuaauacugu 60
cagguaaaga ugucgucagg auucc 85
//
ID ame-mir-9a standard; RNA; AME; 87 BP.
XX
AC MI0001596;
XX
DE Apis mellifera miR-9a stem-loop
XX
RN [1]
RX PUBMED; 17543122.
RA Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM,
RA Samanta MP, Miller J, Elsik CG;
RT "Computational and transcriptional evidence for microRNAs in the honey bee
RT genome";
RL Genome Biol. 8:R97(2007).
XX
RN [2]
RX PUBMED; 22409512.
RA Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green
RA PJ, Zhang W, Robinson GE, Ben-Shahar Y;
RT "Behavioral plasticity in honey bees is associated with differences in
RT brain microRNA transcriptome";
RL Genes Brain Behav. 11:660-670(2012).
XX
DR ENTREZGENE; 732512; Mir9a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0001491"
FT /product="ame-miR-9a-5p"
FT /evidence=experimental
FT /experiment="array [1], RTPCR [1], Illumina [2]"
FT /similarity="MI0000129"
XX
SQ Sequence 87 BP; 20 A; 18 C; 20 G; 0 T; 29 other;
uggcgcggac auuuucuuug guuaucuagc uguaugagua uuauucgaca ucauaaagcu 60
agguuaccgg aguuaagcuc cucgcca 87
//
ID ame-mir-9b standard; RNA; AME; 92 BP.
XX
AC MI0001597;
XX
DE Apis mellifera miR-9b stem-loop
XX
RN [1]
RX PUBMED; 17543122.
RA Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM,
RA Samanta MP, Miller J, Elsik CG;
RT "Computational and transcriptional evidence for microRNAs in the honey bee
RT genome";
RL Genome Biol. 8:R97(2007).
XX
RN [2]
RX PUBMED; 20491979.
RA Behura SK, Whitfield CW;
RT "Correlated expression patterns of microRNA genes with age-dependent
RT behavioural changes in honeybee";
RL Insect Mol Biol. 19:431-439(2010).
XX
RN [3]
RX PUBMED; 22409512.
RA Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green
RA PJ, Zhang W, Robinson GE, Ben-Shahar Y;
RT "Behavioral plasticity in honey bees is associated with differences in
RT brain microRNA transcriptome";
RL Genes Brain Behav. 11:660-670(2012).
XX
RN [4]
RX PUBMED; 26853694.
RA Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs
RA MD, Cristino AS, Pinheiro DG, Simoes ZL;
RT "MicroRNA signatures characterizing caste-independent ovarian activity in
RT queen and worker honeybees (Apis mellifera L.)";
RL Insect Mol Biol. 25:216-226(2016).
XX
DR ENTREZGENE; 732513; Mir9b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..40
FT /accession="MIMAT0001492"
FT /product="ame-miR-9b-5p"
FT /evidence=experimental
FT /experiment="RTPCR [1-2], Illumina [3-4]"
FT /similarity="MI0000129"
XX
SQ Sequence 92 BP; 30 A; 14 C; 15 G; 0 T; 33 other;
uaaugcuagu gcucuuugcu uugguaaucu agcuuuauga uccuuaauua aaaucauaga 60
gcuauauuac caaaguaaag gcaaaagcuu ug 92
//
ID ame-mir-iab-4 standard; RNA; AME; 85 BP.
XX
AC MI0001598;
XX
DE Apis mellifera miR-iab-4 stem-loop
XX
RN [1]
RX PUBMED; 17543122.
RA Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM,
RA Samanta MP, Miller J, Elsik CG;
RT "Computational and transcriptional evidence for microRNAs in the honey bee
RT genome";
RL Genome Biol. 8:R97(2007).
XX
RN [2]
RX PUBMED; 22409512.
RA Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green
RA PJ, Zhang W, Robinson GE, Ben-Shahar Y;
RT "Behavioral plasticity in honey bees is associated with differences in
RT brain microRNA transcriptome";
RL Genes Brain Behav. 11:660-670(2012).
XX
RN [3]
RX PUBMED; 26853694.
RA Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs
RA MD, Cristino AS, Pinheiro DG, Simoes ZL;
RT "MicroRNA signatures characterizing caste-independent ovarian activity in
RT queen and worker honeybees (Apis mellifera L.)";
RL Insect Mol Biol. 25:216-226(2016).
XX
DR ENTREZGENE; 732514; Miriab-4.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0001493"
FT /product="ame-miR-iab-4-5p"
FT /evidence=experimental
FT /experiment="RTPCR [1], Illumina [2-3]"
FT /similarity="MI0000432"
XX
SQ Sequence 85 BP; 22 A; 20 C; 18 G; 0 T; 25 other;
gugaaacccc cuguacguau acugaaugua uccugagugu auuucugucc gguauaccuu 60
caguauacgu aacaggaggc uacac 85
//
ID aga-bantam standard; RNA; AGA; 111 BP.
XX
AC MI0001599;
XX
DE Anopheles gambiae bantam stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 70..92
FT /accession="MIMAT0001494"
FT /product="aga-bantam"
FT /evidence=not_experimental
FT /similarity="MI0000387"
XX
SQ Sequence 111 BP; 34 A; 17 C; 19 G; 0 T; 41 other;
uguguggaug aaauguaauc acagaaccgg uuuucauuuu cgaucugacu uauuuuuuuc 60
acaaacaagu gagaucacuu ugaaagcuga uuuuguacaa uuaauucaac g 111
//
ID aga-let-7 standard; RNA; AGA; 90 BP.
XX
AC MI0001600;
XX
DE Anopheles gambiae let-7 stem-loop
XX
RN [1]
RX PUBMED; 17933784.
RA Winter F, Edaye S, Huttenhofer A, Brunel C;
RT "Anopheles gambiae miRNAs as actors of defence reaction against Plasmodium
RT invasion";
RL Nucleic Acids Res. 35:6953-6962(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0001495"
FT /product="aga-let-7"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT /similarity="MI0000416"
XX
SQ Sequence 90 BP; 19 A; 21 C; 22 G; 0 T; 28 other;
gccuacuccc guguugaggu aguugguugu auaguaccgu gguuccaaua cucgacuaua 60
caauccgcua acuuaccucg uggguagagu 90
//
ID aga-mir-1 standard; RNA; AGA; 98 BP.
XX
AC MI0001601;
XX
DE Anopheles gambiae miR-1 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 62..83
FT /accession="MIMAT0001496"
FT /product="aga-miR-1"
FT /evidence=not_experimental
FT /similarity="MI0000116"
XX
SQ Sequence 98 BP; 30 A; 16 C; 24 G; 0 T; 28 other;
gaagcaaagc ugcgaaaguu ccaugcuucc uugcauucaa uaguauguuu guaaaacccu 60
auggaaugua aagaaguaug gagcgauugg gcuaguuc 98
//
ID aga-mir-10 standard; RNA; AGA; 102 BP.
XX
AC MI0001602;
XX
DE Anopheles gambiae miR-10 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..42
FT /accession="MIMAT0001497"
FT /product="aga-miR-10"
FT /evidence=not_experimental
FT /similarity="MI0000130"
XX
SQ Sequence 102 BP; 26 A; 15 C; 21 G; 0 T; 40 other;
gucgauuuau guucuacauc cacccuguag auccgaauuu guuugaauuu auauuaauaa 60
caaauucggu ucuagagagg uuuguguggg gcauuuguua ac 102
//
ID aga-mir-100 standard; RNA; AGA; 92 BP.
XX
AC MI0001603;
XX
DE Anopheles gambiae miR-100 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0001498"
FT /product="aga-miR-100"
FT /evidence=not_experimental
FT /similarity="MI0000378"
XX
SQ Sequence 92 BP; 22 A; 23 C; 26 G; 0 T; 21 other;
gccccgucug uggaaacccg uagauccgaa cuugugcugc acuguacaac uggacacaag 60
aacggauaua ugggauucug ucgacgguug gc 92
//
ID aga-mir-124 standard; RNA; AGA; 83 BP.
XX
AC MI0001604;
XX
DE Anopheles gambiae miR-124 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..75
FT /accession="MIMAT0001499"
FT /product="aga-miR-124"
FT /evidence=not_experimental
FT /similarity="MI0000373"
XX
SQ Sequence 83 BP; 16 A; 18 C; 23 G; 0 T; 26 other;
cguuuuucuc cugguguuca cuguaggccu guauguucua uugcggauuu cauaaggcac 60
gcggugaaug ccaagagcga acg 83
//
ID aga-mir-125 standard; RNA; AGA; 112 BP.
XX
AC MI0001605;
XX
DE Anopheles gambiae miR-125 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..51
FT /accession="MIMAT0001500"
FT /product="aga-miR-125"
FT /evidence=not_experimental
FT /similarity="MI0000417"
XX
SQ Sequence 112 BP; 23 A; 21 C; 24 G; 0 T; 44 other;
uauuguuucg uuuuuuugua ucugcugauu cccugagacc cuaacuugug acuaucguug 60
caaaguuuca caaguuuuga ucuccgguau uagcgguuga gaugcaacgg ua 112
//
ID aga-mir-133 standard; RNA; AGA; 86 BP.
XX
AC MI0001606;
XX
DE Anopheles gambiae miR-133 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 65..86
FT /accession="MIMAT0001501"
FT /product="aga-miR-133"
FT /evidence=not_experimental
FT /similarity="MI0000362"
XX
SQ Sequence 86 BP; 19 A; 20 C; 18 G; 0 T; 29 other;
agcugguuga caucggguca aaucguaaua uuguugacgc aauauuuucc cuuugcgaau 60
gcauuugguc cccuucaacc agcugu 86
//
ID aga-mir-13b standard; RNA; AGA; 94 BP.
XX
AC MI0001607;
XX
DE Anopheles gambiae miR-13b stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..77
FT /accession="MIMAT0001502"
FT /product="aga-miR-13b"
FT /evidence=not_experimental
FT /similarity="MI0000134"
XX
SQ Sequence 94 BP; 24 A; 18 C; 23 G; 0 T; 29 other;
ugcucguggu caggucguaa aaaugguugu gccgugucga uuuaagaaaa guucauauca 60
cagccauuuu gacgaguuug accacucuug agca 94
//
ID aga-mir-14 standard; RNA; AGA; 94 BP.
XX
AC MI0001608;
XX
DE Anopheles gambiae miR-14 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 58..78
FT /accession="MIMAT0001503"
FT /product="aga-miR-14"
FT /evidence=not_experimental
FT /similarity="MI0000136"
XX
SQ Sequence 94 BP; 19 A; 22 C; 24 G; 0 T; 29 other;
gcccgauaag ccugugggag cgagauuaag gcuugcuggu uaucacguua aacguaguca 60
gucuuuuucu cucuccuauc gguacuaacg gugc 94
//
ID aga-mir-184 standard; RNA; AGA; 82 BP.
XX
AC MI0001609;
XX
DE Anopheles gambiae miR-184 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..71
FT /accession="MIMAT0001504"
FT /product="aga-miR-184"
FT /evidence=not_experimental
FT /similarity="MI0000354"
XX
SQ Sequence 82 BP; 17 A; 25 C; 20 G; 0 T; 20 other;
ggugcacucg aacccuuauc auucuuucgc cccgugugcu uucuaacaac uggacggaga 60
acugauaagg gcccggguca cc 82
//
ID aga-mir-210 standard; RNA; AGA; 80 BP.
XX
AC MI0001610;
XX
DE Anopheles gambiae miR-210 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..69
FT /accession="MIMAT0001505"
FT /product="aga-miR-210"
FT /evidence=not_experimental
FT /similarity="MI0000376"
XX
SQ Sequence 80 BP; 20 A; 16 C; 20 G; 0 T; 24 other;
gaaauucauu gcagcugcug accacugcac aagauuagaa ugcgacucuu gugcguguga 60
caacggcuau uauggguuuu 80
//
ID aga-mir-219 standard; RNA; AGA; 87 BP.
XX
AC MI0001611;
XX
DE Anopheles gambiae miR-219 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0001506"
FT /product="aga-miR-219"
FT /evidence=not_experimental
FT /similarity="MI0000358"
XX
SQ Sequence 87 BP; 17 A; 20 C; 21 G; 0 T; 29 other;
uuucuagcuc ugauugucca aacgcaauuc uuguccugug cugguuuagc uacucaagag 60
uugugacugg acauccgugg cucggaa 87
//
ID aga-mir-263a standard; RNA; AGA; 86 BP.
XX
AC MI0001612;
XX
DE Anopheles gambiae miR-263 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..34
FT /accession="MIMAT0001507"
FT /product="aga-miR-263a"
FT /evidence=not_experimental
FT /similarity="MI0000343"
XX
SQ Sequence 86 BP; 20 A; 19 C; 20 G; 0 T; 27 other;
cccugguaca uguaauggca cuggaagaau ucacgggauu uuuuucaaca uucccguguu 60
cucuuagugg cauaccuagu acaggg 86
//
ID aga-mir-275 standard; RNA; AGA; 95 BP.
XX
AC MI0001613;
XX
DE Anopheles gambiae miR-275 stem-loop
XX
RN [1]
RX PUBMED; 17933784.
RA Winter F, Edaye S, Huttenhofer A, Brunel C;
RT "Anopheles gambiae miRNAs as actors of defence reaction against Plasmodium
RT invasion";
RL Nucleic Acids Res. 35:6953-6962(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..83
FT /accession="MIMAT0001508"
FT /product="aga-miR-275"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT /similarity="MI0000356"
XX
SQ Sequence 95 BP; 23 A; 25 C; 27 G; 0 T; 20 other;
ugagccgucu aaugacacgc gcuaagcagg aaccgggacu ugguacacau ucgcuagcag 60
ucagguaccu gaaguagcgc gcguuauucg gcuca 95
//
ID aga-mir-276 standard; RNA; AGA; 92 BP.
XX
AC MI0001614;
XX
DE Anopheles gambiae miR-276 stem-loop
XX
RN [1]
RX PUBMED; 18500992.
RA Mead EA, Tu Z;
RT "Cloning, characterization, and expression of microRNAs from the Asian
RT malaria mosquito, Anopheles stephensi";
RL BMC Genomics. 9:244(2008).
XX
CC miR-276-5p and miR-276-3p were cloned in Anopheles stephensi and mappedt
CC to the A. gambiae genome [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..33
FT /accession="MIMAT0001509"
FT /product="aga-miR-276-5p"
FT /evidence=not_experimental
FT /similarity="MI0000359"
FT miRNA 55..76
FT /accession="MIMAT0006782"
FT /product="aga-miR-276-3p"
FT /evidence=not_experimental
FT /similarity="MI0000359"
XX
SQ Sequence 92 BP; 22 A; 20 C; 23 G; 0 T; 27 other;
ggugacugcc aucagcgagg uauagaguuc cuacgguaau cgauugaaac uuuguaggaa 60
cuucauaccg ugcucuugga uagccguuua cc 92
//
ID aga-mir-277 standard; RNA; AGA; 90 BP.
XX
AC MI0001615;
XX
DE Anopheles gambiae miR-277 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 59..81
FT /accession="MIMAT0001510"
FT /product="aga-miR-277"
FT /evidence=not_experimental
FT /similarity="MI0000360"
XX
SQ Sequence 90 BP; 23 A; 15 C; 22 G; 0 T; 30 other;
guuuuggggu acgugucaga ggugcauuua caucgaacua uuccaguuga gguauuugua 60
aaugcacuau cugguacgac auuccagaau 90
//
ID aga-mir-278 standard; RNA; AGA; 83 BP.
XX
AC MI0001616;
XX
DE Anopheles gambiae miR-278 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..75
FT /accession="MIMAT0001511"
FT /product="aga-miR-278"
FT /evidence=not_experimental
FT /similarity="MI0000361"
XX
SQ Sequence 83 BP; 15 A; 20 C; 27 G; 0 T; 21 other;
gguacgguac ggacggacga uagucuucaa cgaccguucc guuugacacg aggucggugg 60
gacuuucguc cguuuguaag gcc 83
//
ID aga-mir-279 standard; RNA; AGA; 89 BP.
XX
AC MI0001617;
XX
DE Anopheles gambiae miR-279 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..77
FT /accession="MIMAT0001512"
FT /product="aga-miR-279"
FT /evidence=not_experimental
FT /similarity="MI0000363"
XX
SQ Sequence 89 BP; 24 A; 13 C; 18 G; 0 T; 34 other;
uuccuaucag uguaaauggg ugugaaucua gugauuucac augaauuuuc gauugugacu 60
agauccacac ucauuaaugu uguuuggaa 89
//
ID aga-mir-281 standard; RNA; AGA; 102 BP.
XX
AC MI0001618;
XX
DE Anopheles gambiae miR-281 stem-loop
XX
RN [1]
RX PUBMED; 17933784.
RA Winter F, Edaye S, Huttenhofer A, Brunel C;
RT "Anopheles gambiae miRNAs as actors of defence reaction against Plasmodium
RT invasion";
RL Nucleic Acids Res. 35:6953-6962(2007).
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..79
FT /accession="MIMAT0001513"
FT /product="aga-miR-281"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT /similarity="MI0000366"
XX
SQ Sequence 102 BP; 34 A; 18 C; 20 G; 0 T; 30 other;
gcaaucgaau augaaaauaa agagagcuau ccgucgacag uagggauaua auucacuguc 60
auggaauugc ucucuuuaug uacaauucga uauucaacgu gc 102
//
ID aga-mir-282 standard; RNA; AGA; 93 BP.
XX
AC MI0001619;
XX
DE Anopheles gambiae miR-282 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..39
FT /accession="MIMAT0001514"
FT /product="aga-miR-282"
FT /evidence=not_experimental
FT /similarity="MI0000367"
XX
SQ Sequence 93 BP; 24 A; 21 C; 21 G; 0 T; 27 other;
guaacagagc uaaucuagcc ucuucuaggc uuugucugua caguuucugc aaaccagaca 60
uagccuguca gagguuaggu gaaaucugcu agc 93
//
ID aga-mir-283 standard; RNA; AGA; 92 BP.
XX
AC MI0001620;
XX
DE Anopheles gambiae miR-283 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0001515"
FT /product="aga-miR-283"
FT /evidence=not_experimental
FT /similarity="MI0000368"
XX
SQ Sequence 92 BP; 23 A; 23 C; 19 G; 0 T; 27 other;
uucgaccgaa agguaaauau cagcugguaa uucuaggcua ucaauccauc gugcaucccg 60
ggauuucagc ugauauccac uuuuccgucg ag 92
//
ID aga-mir-2-1 standard; RNA; AGA; 87 BP.
XX
AC MI0001621;
XX
DE Anopheles gambiae miR-2-1 stem-loop
XX
RN [1]
RA Griffiths-Jones S;
RT ";
RL Unpublished (2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 58..80
FT /accession="MIMAT0009202"
FT /product="aga-miR-2"
FT /evidence=not_experimental
FT /similarity="MI0000120"
XX
SQ Sequence 87 BP; 19 A; 22 C; 21 G; 0 T; 25 other;
gcauguccug ucucucaaag uggcugugaa auggugcacu uucgauccga uaucucauau 60
cacagccagc uuugaugagc uaggccg 87
//
ID aga-mir-2-2 standard; RNA; AGA; 98 BP.
XX
AC MI0001622;
XX
DE Anopheles gambiae miR-2-2 stem-loop
XX
RN [1]
RA Griffiths-Jones S;
RT ";
RL Unpublished (2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 59..81
FT /accession="MIMAT0009202"
FT /product="aga-miR-2"
FT /evidence=not_experimental
FT /similarity="MI0000431"
XX
SQ Sequence 98 BP; 21 A; 20 C; 22 G; 0 T; 35 other;
uauugggugc caugcauugu caucaaacuu gguuguugua gcuugcuuug auaguugcua 60
ucacagccag cuuugaugag caaugcguca cuuaccua 98
//
ID aga-mir-305 standard; RNA; AGA; 90 BP.
XX
AC MI0001623;
XX
DE Anopheles gambiae miR-305 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0001518"
FT /product="aga-miR-305"
FT /evidence=not_experimental
FT /similarity="MI0000412"
XX
SQ Sequence 90 BP; 21 A; 18 C; 22 G; 0 T; 29 other;
uuugucacau gucuauugua cuucaucagg ugcucuggug gauuugagaa aacccggcac 60
auguuggagu acacucuaug ugcugacaag 90
//
ID aga-mir-307 standard; RNA; AGA; 98 BP.
XX
AC MI0001624;
XX
DE Anopheles gambiae miR-307 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..75
FT /accession="MIMAT0001519"
FT /product="aga-miR-307"
FT /evidence=not_experimental
FT /similarity="MI0000418"
XX
SQ Sequence 98 BP; 24 A; 27 C; 19 G; 0 T; 28 other;
uggacucauu cucucgauca cucacucaac cuggguguga ugcuuuuuug aaucaucaca 60
accuccuuga gugagcgacc gcggauugac uaaaacca 98
//
ID aga-mir-308 standard; RNA; AGA; 100 BP.
XX
AC MI0001625;
XX
DE Anopheles gambiae miR-308 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 59..80
FT /accession="MIMAT0001520"
FT /product="aga-miR-308"
FT /evidence=not_experimental
FT /similarity="MI0000419"
XX
SQ Sequence 100 BP; 20 A; 20 C; 25 G; 0 T; 35 other;
gcuucucgug cgauguuucg caguauaucc cugugaguuu gcuacuuuuc aauggucaaa 60
ucacaggagu auacugugag auguugccgg uuacuuaggc 100
//
ID aga-mir-315 standard; RNA; AGA; 76 BP.
XX
AC MI0001626;
XX
DE Anopheles gambiae miR-315 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0001521"
FT /product="aga-miR-315"
FT /evidence=not_experimental
FT /similarity="MI0000427"
XX
SQ Sequence 76 BP; 25 A; 12 C; 15 G; 0 T; 24 other;
uauaaaauuu ugauuguugc ucagaaagcc gugucgauua agcaauucgc uuucgggcag 60
uaaucaaagu caaaua 76
//
ID aga-mir-317 standard; RNA; AGA; 90 BP.
XX
AC MI0001627;
XX
DE Anopheles gambiae miR-317 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..80
FT /accession="MIMAT0001522"
FT /product="aga-miR-317"
FT /evidence=not_experimental
FT /similarity="MI0000429"
XX
SQ Sequence 90 BP; 17 A; 23 C; 24 G; 0 T; 26 other;
cgucucugcc acugggauac uccuugugcu cgcugugcau aucgauucaa acuagugaac 60
acaucuggug guaucucagu ggccgggaug 90
//
ID aga-mir-7 standard; RNA; AGA; 87 BP.
XX
AC MI0001628;
XX
DE Anopheles gambiae miR-7 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0001523"
FT /product="aga-miR-7"
FT /evidence=not_experimental
FT /similarity="MI0000127"
XX
SQ Sequence 87 BP; 25 A; 14 C; 16 G; 0 T; 32 other;
ggcaaaacau uguauggaag acuagugauu uuguuguuug gcuuaugaua cuaacaauaa 60
aucucucguc uuucuacaaa guuugcc 87
//
ID aga-mir-79 standard; RNA; AGA; 94 BP.
XX
AC MI0001629;
XX
DE Anopheles gambiae miR-79 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 59..80
FT /accession="MIMAT0001524"
FT /product="aga-miR-79"
FT /evidence=not_experimental
FT /similarity="MI0000374"
XX
SQ Sequence 94 BP; 25 A; 18 C; 21 G; 0 T; 30 other;
gugcccuuuu guccgcgcuu uggcgcuuua gcuguaugau agaauuugaa cuauuucaua 60
aagcuagauu accaaagcau agacgaauug ggac 94
//
ID aga-mir-8 standard; RNA; AGA; 86 BP.
XX
AC MI0001630;
XX
DE Anopheles gambiae miR-8 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..76
FT /accession="MIMAT0001525"
FT /product="aga-miR-8"
FT /evidence=not_experimental
FT /similarity="MI0000128"
XX
SQ Sequence 86 BP; 20 A; 18 C; 21 G; 0 T; 27 other;
gggugucugu ucacaucuua ccgggcagca uuagauaugu uaucggauau uucuaauacu 60
gucagguaaa gaugucgucc gagccc 86
//
ID aga-mir-9a standard; RNA; AGA; 81 BP.
XX
AC MI0001631;
XX
DE Anopheles gambiae miR-9a stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0001526"
FT /product="aga-miR-9a"
FT /evidence=not_experimental
FT /similarity="MI0000129"
XX
SQ Sequence 81 BP; 24 A; 12 C; 15 G; 0 T; 30 other;
gucaauguuc ucuuugguua ucuagcugua ugaguguauu uuaaacguca uaaagcuagc 60
auaccgaagu uaauaauuga c 81
//
ID aga-mir-92a standard; RNA; AGA; 89 BP.
XX
AC MI0001632;
XX
DE Anopheles gambiae miR-92a stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..72
FT /accession="MIMAT0001527"
FT /product="aga-miR-92a"
FT /evidence=not_experimental
FT /similarity="MI0000357"
XX
SQ Sequence 89 BP; 21 A; 21 C; 23 G; 0 T; 24 other;
ucaggacuac gcgucggccg gcucaagagc aaaauugugu uucauacuaa uauugcacuu 60
gucccggccu auguguggua aggccugaa 89
//
ID aga-mir-92b standard; RNA; AGA; 87 BP.
XX
AC MI0001633;
XX
DE Anopheles gambiae miR-92b stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..75
FT /accession="MIMAT0001528"
FT /product="aga-miR-92b"
FT /evidence=not_experimental
FT /similarity="MI0000379"
XX
SQ Sequence 87 BP; 16 A; 23 C; 23 G; 0 T; 25 other;
gggcuccgga uguaggacgu gacaggugca uuauuugcug auuuucaaug ucaaauugca 60
cuugucccgg ccugcagcuu accgccc 87
//
ID aga-mir-9b standard; RNA; AGA; 93 BP.
XX
AC MI0001634;
XX
DE Anopheles gambiae miR-9b stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0001529"
FT /product="aga-miR-9b"
FT /evidence=not_experimental
FT /similarity="MI0000415"
XX
SQ Sequence 93 BP; 25 A; 17 C; 17 G; 0 T; 34 other;
ugccacuuau ugggacuuug gugauuuuag cuguauguug aaugcauucc uaaccacaua 60
uagcuuuauc accaaaaacc uaaugugugu gua 93
//
ID aga-mir-9c standard; RNA; AGA; 90 BP.
XX
AC MI0001635;
XX
DE Anopheles gambiae miR-9c stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0001530"
FT /product="aga-miR-9c"
FT /evidence=not_experimental
FT /similarity="MI0000413"
XX
SQ Sequence 90 BP; 21 A; 15 C; 19 G; 0 T; 35 other;
uuuccggcug uaucuuuggu auucuagcug uagaauguug uuuucauugu aauaucucua 60
aagcuuuagu accagagguc caacugggaa 90
//
ID aga-mir-iab-4 standard; RNA; AGA; 84 BP.
XX
AC MI0001636;
XX
DE Anopheles gambiae miR-iab-4 stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0001531"
FT /product="aga-miR-iab-4"
FT /evidence=not_experimental
FT /similarity="MI0000432"
XX
SQ Sequence 84 BP; 23 A; 20 C; 18 G; 0 T; 23 other;
gugccgcuuc augaacguau acugaaugua uccugagugc uacuuauccg guauaccuuc 60
aguauacgua acaagaggcg acac 84
//
ID hsa-mir-448 standard; RNA; HSA; 111 BP.
XX
AC MI0001637;
XX
DE Homo sapiens miR-448 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
DR HGNC; 26069; MIR448.
DR ENTREZGENE; 554212; MIR448.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR64.
CC The sequence is unrelated to C. elegans mir-64 (MIR:MI0000035).
XX
FH Key Location/Qualifiers
FH
FT miRNA 71..92
FT /accession="MIMAT0001532"
FT /product="hsa-miR-448"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 111 BP; 24 A; 29 C; 30 G; 0 T; 28 other;
gccgggaggu ugaacauccu gcauagugcu gccaggaaau cccuauuuca uauaagaggg 60
ggcuggcugg uugcauaugu aggauguccc aucucccagc ccacuucguc a 111
//
ID mmu-mir-448 standard; RNA; MMU; 112 BP.
XX
AC MI0001638;
XX
DE Mus musculus miR-448 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619406; Mir448.
DR ENTREZGENE; 723914; Mir448.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR64.
CC The sequence is unrelated to C. elegans mir-64 (MIR:MI0000035).
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0017176"
FT /product="mmu-miR-448-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 72..93
FT /accession="MIMAT0001533"
FT /product="mmu-miR-448-3p"
FT /evidence=experimental
FT /experiment="Illumina [2-3]"
FT /similarity="MI0001637"
XX
SQ Sequence 112 BP; 25 A; 29 C; 30 G; 0 T; 28 other;
acgaggaggu ugaacauccu gcauagugcu gccaggaaau cccuacuuca uacuaagagg 60
gggcuggcug guugcauaug uaggaugucc caucuccugg cccacuucgu ca 112
//
ID rno-mir-448 standard; RNA; RNO; 112 BP.
XX
AC MI0001639;
XX
DE Rattus norvegicus miR-448 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314251; Mir448.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR64.
CC The sequence is unrelated to C. elegans mir-64 (MIR:MI0000035).
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0017177"
FT /product="rno-miR-448-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 72..92
FT /accession="MIMAT0001534"
FT /product="rno-miR-448-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0001637"
XX
SQ Sequence 112 BP; 24 A; 30 C; 31 G; 0 T; 27 other;
acggggaggu ugaacauccu gcauagugcu gccaggaaau cccuacuuca uacuaagagg 60
gggcuggcug guugcauaug uaggaugucc caucucccgg cccacuucgu ca 112
//
ID cfa-mir-448 standard; RNA; CFA; 110 BP.
XX
AC MI0001640;
XX
DE Canis familiaris miR-448 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR64.
CC The sequence is unrelated to C. elegans mir-64 (MIR:MI0000035).
XX
FH Key Location/Qualifiers
FH
FT miRNA 70..91
FT /accession="MIMAT0001535"
FT /product="cfa-miR-448"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 110 BP; 23 A; 29 C; 29 G; 0 T; 29 other;
gcagggaggu ugaacauccu gcauagugcu gccaggaaau cccuauuuua uacuaagggg 60
gcuggcuggu ugcauaugua ggauguccca ucuccccgcc cacuucaucg 110
//
ID hsa-mir-429 standard; RNA; HSA; 83 BP.
XX
AC MI0001641;
XX
DE Homo sapiens miR-429 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 13784; MIR429.
DR ENTREZGENE; 554210; MIR429.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR201.
CC The sequence is unrelated to mouse mir-201 (MIR:MI0000244).
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..72
FT /accession="MIMAT0001536"
FT /product="hsa-miR-429"
FT /evidence=experimental
FT /experiment="cloned [1-4]"
XX
SQ Sequence 83 BP; 15 A; 27 C; 21 G; 0 T; 20 other;
cgccggccga ugggcgucuu accagacaug guuagaccug gcccucuguc uaauacuguc 60
ugguaaaacc guccauccgc ugc 83
//
ID mmu-mir-429 standard; RNA; MMU; 83 BP.
XX
AC MI0001642;
XX
DE Mus musculus miR-429 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619402; Mir429.
DR ENTREZGENE; 723865; Mir429.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR201.
CC The sequence is unrelated to mouse mir-201 (MIR:MI0000244).
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0017178"
FT /product="mmu-miR-429-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 51..72
FT /accession="MIMAT0001537"
FT /product="mmu-miR-429-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0001641"
XX
SQ Sequence 83 BP; 17 A; 21 C; 20 G; 0 T; 25 other;
ccugcugaug gaugucuuac cagacauggu uagaucugga ugcaucuguc uaauacuguc 60
ugguaaugcc guccauccac ggc 83
//
ID rno-mir-429 standard; RNA; RNO; 85 BP.
XX
AC MI0001643;
XX
DE Rattus norvegicus miR-429 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
DR ENTREZGENE; 100314067; Mir429.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR201.
CC The sequence is unrelated to mouse mir-201 (MIR:MI0000244).
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0001538"
FT /product="rno-miR-429"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2]"
FT /similarity="MI0001641"
XX
SQ Sequence 85 BP; 17 A; 19 C; 21 G; 0 T; 28 other;
ugccugcuga uggaugucuu accagacaug guuagaucug gauguaucug ucuaauacug 60
ucugguaaug ccguccaucc auggc 85
//
ID cfa-mir-429 standard; RNA; CFA; 85 BP.
XX
AC MI0001644;
XX
DE Canis familiaris miR-429 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR201.
CC The sequence is unrelated to mouse mir-201 (MIR:MI0000244).
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0001539"
FT /product="cfa-miR-429"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 85 BP; 15 A; 20 C; 24 G; 0 T; 26 other;
agccugcuga ugggcgucuu accagacacg guuagaucug gguucuggug ucuaauacug 60
ucugguaaug ccguucaucc auggc 85
//
ID mmu-mir-365-2 standard; RNA; MMU; 112 BP.
XX
AC MI0001645;
XX
DE Mus musculus miR-365-2 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619372; Mir365-2.
DR ENTREZGENE; 723853; Mir365-2.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR190.
CC The sequence is unrelated to mammalian mir-190 (MIR:MI0000486).
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..51
FT /accession="MIMAT0017179"
FT /product="mmu-miR-365-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 68..89
FT /accession="MIMAT0000711"
FT /product="mmu-miR-365-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0000769"
XX
SQ Sequence 112 BP; 32 A; 22 C; 29 G; 0 T; 29 other;
agagugauca aggacagcaa gaaaaaugag ggacuuucag gggcagcugu guuuccugac 60
ucagucauaa ugccccuaaa aauccuuauu guucuugcag ugugcaucgg ag 112
//
ID cfa-mir-365-2 standard; RNA; CFA; 111 BP.
XX
AC MI0001647;
XX
DE Canis familiaris miR-365-2 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR190.
CC The sequence is unrelated to mammalian mir-190 (MIR:MI0000486).
XX
FH Key Location/Qualifiers
FH
FT miRNA 68..89
FT /accession="MIMAT0001540"
FT /product="cfa-miR-365"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 111 BP; 30 A; 21 C; 29 G; 0 T; 31 other;
agaguguuca aggacagcaa gaaaaaugag ggacuuucag gggcagcugu guuuucugac 60
ucagucauaa ugccccuaaa aauccuuauu guucuugcag ugugcaucgg g 111
//
ID hsa-mir-449a standard; RNA; HSA; 91 BP.
XX
AC MI0001648;
XX
DE Homo sapiens miR-449a stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 27645; MIR449A.
DR ENTREZGENE; 554213; MIR449A.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR54.
CC The sequence is unrelated to C. elegans mir-54 (MIR:MI0000025).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001541"
FT /product="hsa-miR-449a"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 91 BP; 21 A; 14 C; 25 G; 0 T; 31 other;
cuguguguga ugagcuggca guguauuguu agcugguuga auaugugaau ggcaucggcu 60
aacaugcaac ugcugucuua uugcauauac a 91
//
ID mmu-mir-449a standard; RNA; MMU; 91 BP.
XX
AC MI0001649;
XX
DE Mus musculus miR-449a stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619407; Mir449a.
DR ENTREZGENE; 723868; Mir449a.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR54.
CC The sequence is unrelated to C. elegans mir-54 (MIR:MI0000025).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001542"
FT /product="mmu-miR-449a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0001648"
FT miRNA 56..77
FT /accession="MIMAT0017180"
FT /product="mmu-miR-449a-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 91 BP; 18 A; 20 C; 26 G; 0 T; 27 other;
cuguguguga uggcuuggca guguauuguu agcugguuga guaugugagc ggcaccagcu 60
aacaugcgac ugcucuccua uugcacacac a 91
//
ID rno-mir-449a standard; RNA; RNO; 91 BP.
XX
AC MI0001650;
XX
DE Rattus norvegicus miR-449a stem-loop
XX
RN [1]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314068; Mir449a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001543"
FT /product="rno-miR-449a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], SOLiD [2]"
FT /similarity="MI0001648"
FT miRNA 56..77
FT /accession="MIMAT0017181"
FT /product="rno-miR-449a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 91 BP; 22 A; 18 C; 24 G; 0 T; 27 other;
cugugugcga uggguuggca guguauuguu agcugguuga guauguaaaa ggcaccagcu 60
aacaugcaac ugcucuccua uugcacauac a 91
//
ID cfa-mir-449a standard; RNA; CFA; 91 BP.
XX
AC MI0001651;
XX
DE Canis familiaris miR-449 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR54.
CC The sequence is unrelated to C. elegans mir-54 (MIR:MI0000025).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001544"
FT /product="cfa-miR-449a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 91 BP; 23 A; 14 C; 23 G; 0 T; 31 other;
ccguguguga uggguuggca guguauuguu agcugguuga auauaugaau ggcaucagcu 60
aacaugcaac ugcuaucuua uugcauauac a 91
//
ID hsa-mir-450a-1 standard; RNA; HSA; 91 BP.
XX
AC MI0001652;
XX
DE Homo sapiens miR-450a-1 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [3]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 23226537.
RA Ple H, Landry P, Benham A, Coarfa C, Gunaratne PH, Provost P;
RT "The repertoire and features of human platelet microRNAs";
RL PLoS One. 7:e50746(2012).
XX
DR HGNC; 28008; MIR450A1.
DR ENTREZGENE; 554214; MIR450A1.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR238.
CC The sequence is unrelated to C. elegans mir-238 (MIR:MI0000313).
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0001545"
FT /product="hsa-miR-450a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], array-cloned [2]"
FT miRNA 53..74
FT /accession="MIMAT0022700"
FT /product="hsa-miR-450a-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 91 BP; 30 A; 11 C; 14 G; 0 T; 36 other;
aaacgauacu aaacuguuuu ugcgaugugu uccuaauaug cacuauaaau auauugggaa 60
cauuuugcau guauaguuuu guaucaauau a 91
//
ID mmu-mir-450a-1 standard; RNA; MMU; 91 BP.
XX
AC MI0001653;
XX
DE Mus musculus miR-450a-1 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619410; Mirn450-1.
DR ENTREZGENE; 723869; Mir450-1.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR238.
CC The sequence is unrelated to C. elegans mir-238 (MIR:MI0000313).
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0001546"
FT /product="mmu-miR-450a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0001652"
FT miRNA 53..74
FT /accession="MIMAT0017182"
FT /product="mmu-miR-450a-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 91 BP; 26 A; 11 C; 19 G; 0 T; 35 other;
gagagauacu gagcuguuuu ugcgaugugu uccuaauaug ugcuauaauu auauugggaa 60
cauuuugcau aaauagcuuu gugucaauac a 91
//
ID rno-mir-450a standard; RNA; RNO; 91 BP.
XX
AC MI0001654;
XX
DE Rattus norvegicus miR-450a stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314069; Mir450a.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR238.
CC The sequence is unrelated to C. elegans mir-238 (MIR:MI0000313).
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0001547"
FT /product="rno-miR-450a-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0001652"
FT miRNA 52..72
FT /accession="MIMAT0017183"
FT /product="rno-miR-450a-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
XX
SQ Sequence 91 BP; 25 A; 13 C; 21 G; 0 T; 32 other;
gagagaugcg gagcuguuuu ugcgaugugu uccuaaugug ugcuacaauu auauugggaa 60
cauuuugcau aaauaguuuu acaucgacac a 91
//
ID cfa-mir-450a standard; RNA; CFA; 91 BP.
XX
AC MI0001655;
XX
DE Canis familiaris miR-450a stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR238.
CC The sequence is unrelated to C. elegans mir-238 (MIR:MI0000313).
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0001548"
FT /product="cfa-miR-450a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 91 BP; 25 A; 11 C; 21 G; 0 T; 34 other;
gaaagaugcu gaacuguuuu ugcgaugugu uccuaauaug caguaugaac auauugggag 60
cauuuugcau gcaugguuuu guaucaauau a 91
//
ID rno-mir-365 standard; RNA; RNO; 86 BP.
XX
AC MI0001656;
XX
DE Rattus norvegicus miR-365 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
RN [2]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314252; Mir365.
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR245.
CC The sequence is unrelated to C. elegans mir-245 (MIR:MI0000321).
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..31
FT /accession="MIMAT0017184"
FT /product="rno-miR-365-5p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT miRNA 55..76
FT /accession="MIMAT0001549"
FT /product="rno-miR-365-3p"
FT /evidence=experimental
FT /experiment="SOLiD [2]"
FT /similarity="MI0000767"
XX
SQ Sequence 86 BP; 25 A; 19 C; 18 G; 0 T; 24 other;
acagcaagaa aaaugaggga cuuucagggg cagcuguguu uccugacuca gucauaaugc 60
cccuaaaaau ccuuauuguu cuugca 86
//
ID cfa-mir-365-1 standard; RNA; CFA; 87 BP.
XX
AC MI0001657;
XX
DE Canis familiaris miR-365-1 stem-loop
XX
RN [1]
RX PUBMED; 15735639.
RA Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES,
RA Kellis M;
RT "Systematic discovery of regulatory motifs in human promoters and 3' UTRs
RT by comparison of several mammals";
RL Nature. 434:338-345(2005).
XX
CC Xie et al. [1] refer to this sequence by the internal identifier MIR245.
CC The sequence is unrelated to C. elegans mir-245 (MIR:MI0000321).
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..77
FT /accession="MIMAT0001540"
FT /product="cfa-miR-365"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 87 BP; 23 A; 20 C; 19 G; 0 T; 25 other;
accgcaggga aaaugaggga cuuuuggggg cagauguguu uccauuccac uaucauaaug 60
ccccuaaaaa uccuuauugc ucuugca 87
//
ID mghv-mir-M1-1 standard; RNA; VRL; 65 BP.
XX
AC MI0001669;
XX
DE Mouse gammaherpesvirus 68 miR-M1-1 stem-loop
XX
RN [1]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 19948768.
RA Diebel KW, Smith AL, van Dyk LF;
RT "Mature and functional viral miRNAs transcribed from novel RNA polymerase
RT III promoters";
RL RNA. 16:170-185(2010).
XX
RN [4]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [5]
RX PUBMED; 20660200.
RA Reese TA, Xia J, Johnson LS, Zhou X, Zhang W, Virgin HW;
RT "Identification of novel microRNA-like molecules generated from
RT herpesvirus and host tRNA transcripts";
RL J Virol. 84:10344-10353(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..24
FT /accession="MIMAT0017185"
FT /product="mghv-miR-M1-1-5p"
FT /evidence=experimental
FT /experiment="454 [4]"
FT miRNA 41..62
FT /accession="MIMAT0001564"
FT /product="mghv-miR-M1-1-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5]"
XX
SQ Sequence 65 BP; 16 A; 12 C; 16 G; 0 T; 21 other;
uggucgagga agugggucca acuuuauccc uauaguguga uagaaauggc cguacuuccu 60
uuaua 65
//
ID mghv-mir-M1-2 standard; RNA; VRL; 66 BP.
XX
AC MI0001670;
XX
DE Mouse gammaherpesvirus 68 miR-M1-2 stem-loop
XX
RN [1]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 19948768.
RA Diebel KW, Smith AL, van Dyk LF;
RT "Mature and functional viral miRNAs transcribed from novel RNA polymerase
RT III promoters";
RL RNA. 16:170-185(2010).
XX
RN [4]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [5]
RX PUBMED; 20660200.
RA Reese TA, Xia J, Johnson LS, Zhou X, Zhang W, Virgin HW;
RT "Identification of novel microRNA-like molecules generated from
RT herpesvirus and host tRNA transcripts";
RL J Virol. 84:10344-10353(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..23
FT /accession="MIMAT0017186"
FT /product="mghv-miR-M1-2-5p"
FT /evidence=experimental
FT /experiment="454 [4]"
FT miRNA 45..66
FT /accession="MIMAT0001565"
FT /product="mghv-miR-M1-2-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5]"
XX
SQ Sequence 66 BP; 12 A; 16 C; 22 G; 0 T; 16 other;
gagaggggga gugugugguc uguagagaga caugaguuga ucggcagacc cccucucccc 60
cucuuu 66
//
ID mghv-mir-M1-3 standard; RNA; VRL; 61 BP.
XX
AC MI0001671;
XX
DE Mouse gammaherpesvirus 68 miR-M1-3 stem-loop
XX
RN [1]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [2]
RX PUBMED; 19948768.
RA Diebel KW, Smith AL, van Dyk LF;
RT "Mature and functional viral miRNAs transcribed from novel RNA polymerase
RT III promoters";
RL RNA. 16:170-185(2010).
XX
RN [3]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [4]
RX PUBMED; 20660200.
RA Reese TA, Xia J, Johnson LS, Zhou X, Zhang W, Virgin HW;
RT "Identification of novel microRNA-like molecules generated from
RT herpesvirus and host tRNA transcripts";
RL J Virol. 84:10344-10353(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0017187"
FT /product="mghv-miR-M1-3-5p"
FT /evidence=experimental
FT /experiment="454 [3]"
FT miRNA 39..60
FT /accession="MIMAT0001566"
FT /product="mghv-miR-M1-3-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 454 [3], Illumina [4]"
XX
SQ Sequence 61 BP; 10 A; 18 C; 21 G; 0 T; 12 other;
gaaguagcga accucugcuc acugcccggg cccuccggga ggugagcagg aguugcgcuu 60
u 61
//
ID mghv-mir-M1-4 standard; RNA; VRL; 94 BP.
XX
AC MI0001672;
XX
DE Mouse gammaherpesvirus 68 miR-M1-4 stem-loop
XX
RN [1]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 19948768.
RA Diebel KW, Smith AL, van Dyk LF;
RT "Mature and functional viral miRNAs transcribed from novel RNA polymerase
RT III promoters";
RL RNA. 16:170-185(2010).
XX
RN [4]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [5]
RX PUBMED; 20660200.
RA Reese TA, Xia J, Johnson LS, Zhou X, Zhang W, Virgin HW;
RT "Identification of novel microRNA-like molecules generated from
RT herpesvirus and host tRNA transcripts";
RL J Virol. 84:10344-10353(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001567"
FT /product="mghv-miR-M1-4-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5]"
FT miRNA 53..75
FT /accession="MIMAT0017188"
FT /product="mghv-miR-M1-4-3p"
FT /evidence=experimental
FT /experiment="454 [4]"
XX
SQ Sequence 94 BP; 19 A; 28 C; 19 G; 0 T; 28 other;
cgagcccuga ccaucgagga gcacguguua uucuagaccu cucuuccagc uaagauagca 60
ugugccgucc ucuuuguuuc ccaagucagu auuc 94
//
ID mghv-mir-M1-5 standard; RNA; VRL; 60 BP.
XX
AC MI0001673;
XX
DE Mouse gammaherpesvirus 68 miR-M1-5 stem-loop
XX
RN [1]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 19948768.
RA Diebel KW, Smith AL, van Dyk LF;
RT "Mature and functional viral miRNAs transcribed from novel RNA polymerase
RT III promoters";
RL RNA. 16:170-185(2010).
XX
RN [4]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [5]
RX PUBMED; 20660200.
RA Reese TA, Xia J, Johnson LS, Zhou X, Zhang W, Virgin HW;
RT "Identification of novel microRNA-like molecules generated from
RT herpesvirus and host tRNA transcripts";
RL J Virol. 84:10344-10353(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..23
FT /accession="MIMAT0001568"
FT /product="mghv-miR-M1-5-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5]"
FT miRNA 38..59
FT /accession="MIMAT0017189"
FT /product="mghv-miR-M1-5-3p"
FT /evidence=experimental
FT /experiment="454 [4]"
XX
SQ Sequence 60 BP; 11 A; 20 C; 18 G; 0 T; 11 other;
cagaguugag aucgggucgu cucccccugg cggaaggagg caaacccgag cuccuccuuc 60
//
ID mghv-mir-M1-6 standard; RNA; VRL; 63 BP.
XX
AC MI0001674;
XX
DE Mouse gammaherpesvirus 68 miR-M1-6 stem-loop
XX
RN [1]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 19948768.
RA Diebel KW, Smith AL, van Dyk LF;
RT "Mature and functional viral miRNAs transcribed from novel RNA polymerase
RT III promoters";
RL RNA. 16:170-185(2010).
XX
RN [4]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [5]
RX PUBMED; 20660200.
RA Reese TA, Xia J, Johnson LS, Zhou X, Zhang W, Virgin HW;
RT "Identification of novel microRNA-like molecules generated from
RT herpesvirus and host tRNA transcripts";
RL J Virol. 84:10344-10353(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..21
FT /accession="MIMAT0017190"
FT /product="mghv-miR-M1-6-5p"
FT /evidence=experimental
FT /experiment="454 [4]"
FT miRNA 41..62
FT /accession="MIMAT0001569"
FT /product="mghv-miR-M1-6-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5]"
XX
SQ Sequence 63 BP; 16 A; 15 C; 12 G; 0 T; 20 other;
caaccaccuc ccacaauuuc agagucuuag ccagauuauc ugaaacugug ugaggugguu 60
uuu 63
//
ID mghv-mir-M1-7 standard; RNA; VRL; 60 BP.
XX
AC MI0001675;
XX
DE Mouse gammaherpesvirus 68 miR-M1-7 stem-loop
XX
RN [1]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 19948768.
RA Diebel KW, Smith AL, van Dyk LF;
RT "Mature and functional viral miRNAs transcribed from novel RNA polymerase
RT III promoters";
RL RNA. 16:170-185(2010).
XX
RN [4]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [5]
RX PUBMED; 20660200.
RA Reese TA, Xia J, Johnson LS, Zhou X, Zhang W, Virgin HW;
RT "Identification of novel microRNA-like molecules generated from
RT herpesvirus and host tRNA transcripts";
RL J Virol. 84:10344-10353(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 1..22
FT /accession="MIMAT0001570"
FT /product="mghv-miR-M1-7-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5]"
FT miRNA 40..60
FT /accession="MIMAT0001571"
FT /product="mghv-miR-M1-7-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5]"
XX
SQ Sequence 60 BP; 14 A; 13 C; 16 G; 0 T; 17 other;
aaagguggag gugcgguaac cuccuaagau uacuguuggg auaucgcgcc caccuuuauu 60
//
ID mghv-mir-M1-8 standard; RNA; VRL; 71 BP.
XX
AC MI0001676;
XX
DE Mouse gammaherpesvirus 68 miR-M1-8 stem-loop
XX
RN [1]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 19948768.
RA Diebel KW, Smith AL, van Dyk LF;
RT "Mature and functional viral miRNAs transcribed from novel RNA polymerase
RT III promoters";
RL RNA. 16:170-185(2010).
XX
RN [4]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [5]
RX PUBMED; 20660200.
RA Reese TA, Xia J, Johnson LS, Zhou X, Zhang W, Virgin HW;
RT "Identification of novel microRNA-like molecules generated from
RT herpesvirus and host tRNA transcripts";
RL J Virol. 84:10344-10353(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0001572"
FT /product="mghv-miR-M1-8-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5]"
FT miRNA 46..67
FT /accession="MIMAT0017191"
FT /product="mghv-miR-M1-8-3p"
FT /evidence=experimental
FT /experiment="454 [4]"
XX
SQ Sequence 71 BP; 17 A; 15 C; 17 G; 0 T; 22 other;
uuuaccagca cucacugggg guuuggucag gagaucaagu agaucugacc aacccuaagu 60
gaguuuuucu u 71
//
ID mghv-mir-M1-9 standard; RNA; VRL; 60 BP.
XX
AC MI0001677;
XX
DE Mouse gammaherpesvirus 68 miR-M1-9 stem-loop
XX
RN [1]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 19948768.
RA Diebel KW, Smith AL, van Dyk LF;
RT "Mature and functional viral miRNAs transcribed from novel RNA polymerase
RT III promoters";
RL RNA. 16:170-185(2010).
XX
RN [4]
RX PUBMED; 20668074.
RA Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H;
RT "Identification and analysis of expression of novel microRNAs of murine
RT gammaherpesvirus 68";
RL J Virol. 84:10266-10275(2010).
XX
RN [5]
RX PUBMED; 20660200.
RA Reese TA, Xia J, Johnson LS, Zhou X, Zhang W, Virgin HW;
RT "Identification of novel microRNA-like molecules generated from
RT herpesvirus and host tRNA transcripts";
RL J Virol. 84:10344-10353(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..60
FT /accession="MIMAT0001573"
FT /product="mghv-miR-M1-9"
FT /evidence=experimental
FT /experiment="cloned [1-3], 454 [4], Illumina [5]"
XX
SQ Sequence 60 BP; 13 A; 12 C; 14 G; 0 T; 21 other;
ugagguuccc ggcaaauguu ggauagauag guaacuucuc acauuugccu ggaccuuuuu 60
//
ID hcmv-mir-UL22A standard; RNA; VRL; 68 BP.
XX
AC MI0001678;
XX
DE Human cytomegalovirus miR-UL22A stem-loop
XX
RN [1]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [2]
RX PUBMED; 16207254.
RA Dunn W, Trang P, Zhong Q, Yang E, van Belle C, Liu F;
RT "Human cytomegalovirus expresses novel microRNAs during productive viral
RT infection";
RL Cell Microbiol. 7:1684-1695(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 22013051.
RA Stark TJ, Arnold JD, Spector DH, Yeo GW;
RT "High-resolution profiling and analysis of viral and host small RNAs
RT during human cytomegalovirus infection";
RL J Virol. 86:226-235(2012).
XX
RN [5]
RX PUBMED; 22715351.
RA Meshesha MK, Veksler-Lublinsky I, Isakov O, Reichenstein I, Shomron N,
RA Kedem K, Ziv-Ukelson M, Bentwich Z, Avni YS;
RT "The microRNA Transcriptome of Human Cytomegalovirus (HCMV)";
RL Open Virol J. 6:38-48(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..26
FT /accession="MIMAT0001574"
FT /product="hcmv-miR-UL22A-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 44..65
FT /accession="MIMAT0001575"
FT /product="hcmv-miR-UL22A-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
XX
SQ Sequence 68 BP; 17 A; 15 C; 15 G; 0 T; 21 other;
ccugucuaac uagccuuccc gugagaguuu augaacaugu aucucaccag aaugcuaguu 60
uguagagg 68
//
ID hcmv-mir-UL36 standard; RNA; VRL; 75 BP.
XX
AC MI0001679;
XX
DE Human cytomegalovirus miR-UL36 stem-loop
XX
RN [1]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [2]
RX PUBMED; 16140786.
RA Grey F, Antoniewicz A, Allen E, Saugstad J, McShea A, Carrington JC,
RA Nelson J;
RT "Identification and characterization of human cytomegalovirus-encoded
RT microRNAs";
RL J Virol. 79:12095-12099(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 22013051.
RA Stark TJ, Arnold JD, Spector DH, Yeo GW;
RT "High-resolution profiling and analysis of viral and host small RNAs
RT during human cytomegalovirus infection";
RL J Virol. 86:226-235(2012).
XX
RN [5]
RX PUBMED; 22715351.
RA Meshesha MK, Veksler-Lublinsky I, Isakov O, Reichenstein I, Shomron N,
RA Kedem K, Ziv-Ukelson M, Bentwich Z, Avni YS;
RT "The microRNA Transcriptome of Human Cytomegalovirus (HCMV)";
RL Open Virol J. 6:38-48(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0001576"
FT /product="hcmv-miR-UL36-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [2], Illumina [4-5]"
FT miRNA 50..71
FT /accession="MIMAT0004754"
FT /product="hcmv-miR-UL36-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 75 BP; 14 A; 19 C; 23 G; 0 T; 19 other;
ccacgucguu gaagacaccu ggaaagagga cguucgcucg ggcacguucu uuccaggugu 60
uuucaacgug cgugg 75
//
ID hcmv-mir-UL112 standard; RNA; VRL; 67 BP.
XX
AC MI0001680;
XX
DE Human cytomegalovirus miR-UL112 stem-loop
XX
RN [1]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 22013051.
RA Stark TJ, Arnold JD, Spector DH, Yeo GW;
RT "High-resolution profiling and analysis of viral and host small RNAs
RT during human cytomegalovirus infection";
RL J Virol. 86:226-235(2012).
XX
RN [4]
RX PUBMED; 22715351.
RA Meshesha MK, Veksler-Lublinsky I, Isakov O, Reichenstein I, Shomron N,
RA Kedem K, Ziv-Ukelson M, Bentwich Z, Avni YS;
RT "The microRNA Transcriptome of Human Cytomegalovirus (HCMV)";
RL Open Virol J. 6:38-48(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0026552"
FT /product="hcmv-miR-UL112-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 43..64
FT /accession="MIMAT0001577"
FT /product="hcmv-miR-UL112-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 67 BP; 14 A; 20 C; 19 G; 0 T; 14 other;
gacagccucc ggaucacaug guuacucagc gucugccagc cuaagugacg gugagaucca 60
ggcuguc 67
//
ID hcmv-mir-UL148D standard; RNA; VRL; 72 BP.
XX
AC MI0001681;
XX
DE Human cytomegalovirus miR-UL148D stem-loop
XX
RN [1]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 22013051.
RA Stark TJ, Arnold JD, Spector DH, Yeo GW;
RT "High-resolution profiling and analysis of viral and host small RNAs
RT during human cytomegalovirus infection";
RL J Virol. 86:226-235(2012).
XX
RN [4]
RX PUBMED; 22715351.
RA Meshesha MK, Veksler-Lublinsky I, Isakov O, Reichenstein I, Shomron N,
RA Kedem K, Ziv-Ukelson M, Bentwich Z, Avni YS;
RT "The microRNA Transcriptome of Human Cytomegalovirus (HCMV)";
RL Open Virol J. 6:38-48(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..70
FT /accession="MIMAT0001578"
FT /product="hcmv-miR-UL148D"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 72 BP; 11 A; 20 C; 25 G; 0 T; 16 other;
agcaggugag guuggggcgg acaacguguu gcggauugug gcgagaacgu cguccucccc 60
uucuucaccg cc 72
//
ID hcmv-mir-US5-1 standard; RNA; VRL; 66 BP.
XX
AC MI0001682;
XX
DE Human cytomegalovirus miR-US5-1 stem-loop
XX
RN [1]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [2]
RX PUBMED; 16140786.
RA Grey F, Antoniewicz A, Allen E, Saugstad J, McShea A, Carrington JC,
RA Nelson J;
RT "Identification and characterization of human cytomegalovirus-encoded
RT microRNAs";
RL J Virol. 79:12095-12099(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 22013051.
RA Stark TJ, Arnold JD, Spector DH, Yeo GW;
RT "High-resolution profiling and analysis of viral and host small RNAs
RT during human cytomegalovirus infection";
RL J Virol. 86:226-235(2012).
XX
RN [5]
RX PUBMED; 22715351.
RA Meshesha MK, Veksler-Lublinsky I, Isakov O, Reichenstein I, Shomron N,
RA Kedem K, Ziv-Ukelson M, Bentwich Z, Avni YS;
RT "The microRNA Transcriptome of Human Cytomegalovirus (HCMV)";
RL Open Virol J. 6:38-48(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 43..63
FT /accession="MIMAT0001579"
FT /product="hcmv-miR-US5-1"
FT /evidence=experimental
FT /experiment="cloned [1,3], Northern [2], Illumina [4-5]"
XX
SQ Sequence 66 BP; 15 A; 16 C; 15 G; 0 T; 20 other;
ugaacgcuuu cgucguguuu uucaugcagc uuuuacagac caugacaagc cugacgagag 60
cguuca 66
//
ID hcmv-mir-US5-2 standard; RNA; VRL; 65 BP.
XX
AC MI0001683;
XX
DE Human cytomegalovirus miR-US5-2 stem-loop
XX
RN [1]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 22013051.
RA Stark TJ, Arnold JD, Spector DH, Yeo GW;
RT "High-resolution profiling and analysis of viral and host small RNAs
RT during human cytomegalovirus infection";
RL J Virol. 86:226-235(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..29
FT /accession="MIMAT0026553"
FT /product="hcmv-miR-US5-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 42..63
FT /accession="MIMAT0001580"
FT /product="hcmv-miR-US5-2-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3]"
XX
SQ Sequence 65 BP; 13 A; 14 C; 16 G; 0 T; 22 other;
ggaggcuuuc gccacaccua uccugaaagc guugcauucu uuaugauagg ugugacgaug 60
ucuuu 65
//
ID hcmv-mir-US25-1 standard; RNA; VRL; 70 BP.
XX
AC MI0001684;
XX
DE Human cytomegalovirus miR-US25-1 stem-loop
XX
RN [1]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [2]
RX PUBMED; 16207254.
RA Dunn W, Trang P, Zhong Q, Yang E, van Belle C, Liu F;
RT "Human cytomegalovirus expresses novel microRNAs during productive viral
RT infection";
RL Cell Microbiol. 7:1684-1695(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 22013051.
RA Stark TJ, Arnold JD, Spector DH, Yeo GW;
RT "High-resolution profiling and analysis of viral and host small RNAs
RT during human cytomegalovirus infection";
RL J Virol. 86:226-235(2012).
XX
RN [5]
RX PUBMED; 22715351.
RA Meshesha MK, Veksler-Lublinsky I, Isakov O, Reichenstein I, Shomron N,
RA Kedem K, Ziv-Ukelson M, Bentwich Z, Avni YS;
RT "The microRNA Transcriptome of Human Cytomegalovirus (HCMV)";
RL Open Virol J. 6:38-48(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..25
FT /accession="MIMAT0001581"
FT /product="hcmv-miR-US25-1-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 48..68
FT /accession="MIMAT0004755"
FT /product="hcmv-miR-US25-1-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 70 BP; 9 A; 23 C; 22 G; 0 T; 16 other;
ugugaaccgc ucaguggcuc ggaccgccgg cuguuucugc gcaccggucc gaacgcuagg 60
ucgguucuca 70
//
ID hcmv-mir-US25-2 standard; RNA; VRL; 90 BP.
XX
AC MI0001685;
XX
DE Human cytomegalovirus miR-US25-2 stem-loop
XX
RN [1]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 22013051.
RA Stark TJ, Arnold JD, Spector DH, Yeo GW;
RT "High-resolution profiling and analysis of viral and host small RNAs
RT during human cytomegalovirus infection";
RL J Virol. 86:226-235(2012).
XX
RN [4]
RX PUBMED; 22715351.
RA Meshesha MK, Veksler-Lublinsky I, Isakov O, Reichenstein I, Shomron N,
RA Kedem K, Ziv-Ukelson M, Bentwich Z, Avni YS;
RT "The microRNA Transcriptome of Human Cytomegalovirus (HCMV)";
RL Open Virol J. 6:38-48(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0001582"
FT /product="hcmv-miR-US25-2-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 64..87
FT /accession="MIMAT0001583"
FT /product="hcmv-miR-US25-2-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 90 BP; 10 A; 26 C; 32 G; 0 T; 22 other;
cgguuagcgg ucuguucagg uggaugaggg cucuucacgg ucgggcacuc ggcugugccu 60
gucauccacu uggagagcuc ccgcgguccg 90
//
ID hcmv-mir-US33 standard; RNA; VRL; 70 BP.
XX
AC MI0001686;
XX
DE Human cytomegalovirus miR-US33 stem-loop
XX
RN [1]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 22013051.
RA Stark TJ, Arnold JD, Spector DH, Yeo GW;
RT "High-resolution profiling and analysis of viral and host small RNAs
RT during human cytomegalovirus infection";
RL J Virol. 86:226-235(2012).
XX
RN [4]
RX PUBMED; 22715351.
RA Meshesha MK, Veksler-Lublinsky I, Isakov O, Reichenstein I, Shomron N,
RA Kedem K, Ziv-Ukelson M, Bentwich Z, Avni YS;
RT "The microRNA Transcriptome of Human Cytomegalovirus (HCMV)";
RL Open Virol J. 6:38-48(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0001584"
FT /product="hcmv-miR-US33-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 45..65
FT /accession="MIMAT0004756"
FT /product="hcmv-miR-US33-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 70 BP; 15 A; 24 C; 21 G; 0 T; 10 other;
cacgguugau ugugcccgga ccgugggcgc gacgaaaccc accgucacgg uccgagcaca 60
uccaaacgug 70
//
ID osa-MIR435 standard; RNA; OSA; 132 BP.
XX
AC MI0001687;
XX
DE Oryza sativa miR435 stem-loop
XX
RN [1]
RX PUBMED; 15805478.
RA Sunkar R, Girke T, Jain PK, Zhu JK;
RT "Cloning and characterization of microRNAs from rice";
RL Plant Cell. 17:1397-1411(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 97..116
FT /accession="MIMAT0001585"
FT /product="osa-miR435"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 132 BP; 36 A; 27 C; 31 G; 0 T; 38 other;
uuccaccuuc ccaaaaacuc cccagcagac cuggagcgaa aauugccuug aauuagcuuc 60
agaccuauag ugucguugau aguuuaggga cauguuuuau ccgguauugg aguugaggga 120
ugaaaauugg ac 132
//
ID osa-MIR437 standard; RNA; OSA; 213 BP.
XX
AC MI0001688;
XX
DE Oryza sativa miR437 stem-loop
XX
RN [1]
RX PUBMED; 15805478.
RA Sunkar R, Girke T, Jain PK, Zhu JK;
RT "Cloning and characterization of microRNAs from rice";
RL Plant Cell. 17:1397-1411(2005).
XX
RN [2]
RX PUBMED; 19903869.
RA Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
RT "Rice MicroRNA effector complexes and targets";
RL Plant Cell. 21:3421-3435(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 155..175
FT /accession="MIMAT0001586"
FT /product="osa-miR437"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
XX
SQ Sequence 213 BP; 72 A; 28 C; 33 G; 0 T; 80 other;
cccucuguuu cauauuguau uguguuuuag uuuuguugua agucaaaauu cuuuuacuuu 60
gaccaaguuu guaguaaaau aauuaacauc uaaaauacca aauaaauaca cuauugagac 120
auauuucuug guugauuuuu cuauaaacuu ggucaaaguu agagaaguuu gacuuaggac 180
aaaacuaaac accuuaugau auggaacaga ggg 213
//
ID osa-MIR438 standard; RNA; OSA; 186 BP.
XX
AC MI0001689;
XX
DE Oryza sativa miR438 stem-loop
XX
RN [1]
RX PUBMED; 15805478.
RA Sunkar R, Girke T, Jain PK, Zhu JK;
RT "Cloning and characterization of microRNAs from rice";
RL Plant Cell. 17:1397-1411(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0001587"
FT /product="osa-miR438"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 186 BP; 48 A; 26 C; 40 G; 0 T; 72 other;
aacguguuuu gggcaaacuu guuuucccac gcguuauagu gaaaacuuuu ggaauauguu 60
uguuauggga guauauauua uugauauugg aucuagaagc auaauuuuau auaacgugug 120
uuacgggugg acaugguuuc aaaaguuuuc acuuuaacgc gugggauauc aucuacuucc 180
uccguu 186
//
ID osa-MIR390 standard; RNA; OSA; 91 BP.
XX
AC MI0001690;
XX
DE Oryza sativa miR390 stem-loop
XX
RN [1]
RX PUBMED; 15805478.
RA Sunkar R, Girke T, Jain PK, Zhu JK;
RT "Cloning and characterization of microRNAs from rice";
RL Plant Cell. 17:1397-1411(2005).
XX
RN [2]
RX PUBMED; 21901091.
RA Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
RT "Viral infection induces expression of novel phased microRNAs from
RT conserved cellular microRNA precursors";
RL PLoS Pathog. 7:e1002176(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0001588"
FT /product="osa-miR390-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 56..75
FT /accession="MIMAT0022888"
FT /product="osa-miR390-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 91 BP; 23 A; 22 C; 22 G; 0 T; 24 other;
gguauggaac aauccuugaa gcucaggagg gauagcgccu cgaaaucaaa cuaggcgcua 60
ucuauccuga gcuccauggu uuguucuuac c 91
//
ID osa-MIR439a standard; RNA; OSA; 93 BP.
XX
AC MI0001691;
XX
DE Oryza sativa miR439a stem-loop
XX
RN [1]
RX PUBMED; 15805478.
RA Sunkar R, Girke T, Jain PK, Zhu JK;
RT "Cloning and characterization of microRNAs from rice";
RL Plant Cell. 17:1397-1411(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 66..86
FT /accession="MIMAT0001589"
FT /product="osa-miR439a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 93 BP; 17 A; 23 C; 27 G; 0 T; 26 other;
uacccugucg aacugacgca guucgacaug uaccugucga acugugguug uucgauaggu 60
aucccugucg aaccgcgguu guucgacagg gug 93
//
ID osa-MIR439b standard; RNA; OSA; 60 BP.
XX
AC MI0001692;
XX
DE Oryza sativa miR439b stem-loop
XX
RN [1]
RX PUBMED; 15805478.
RA Sunkar R, Girke T, Jain PK, Zhu JK;
RT "Cloning and characterization of microRNAs from rice";
RL Plant Cell. 17:1397-1411(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 36..56
FT /accession="MIMAT0001590"
FT /product="osa-miR439b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 60 BP; 9 A; 14 C; 18 G; 0 T; 19 other;
uuccugucga auugugguug uucgauaggu accccugucg aaccgcgguu guucgacagg 60
//
ID osa-MIR439c standard; RNA; OSA; 93 BP.
XX
AC MI0001693;
XX
DE Oryza sativa miR439c stem-loop
XX
RN [1]
RX PUBMED; 15805478.
RA Sunkar R, Girke T, Jain PK, Zhu JK;
RT "Cloning and characterization of microRNAs from rice";
RL Plant Cell. 17:1397-1411(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 66..86
FT /accession="MIMAT0001591"
FT /product="osa-miR439c"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 93 BP; 17 A; 23 C; 27 G; 0 T; 26 other;
uacccugucg aacugacgca guucgacaug uaccugucga acugugguug uucgauaggu 60
aucccugucg aaccgcgguu guucgacagg gug 93
//
ID osa-MIR439d standard; RNA; OSA; 98 BP.
XX
AC MI0001694;
XX
DE Oryza sativa miR439d stem-loop
XX
RN [1]
RX PUBMED; 15805478.
RA Sunkar R, Girke T, Jain PK, Zhu JK;
RT "Cloning and characterization of microRNAs from rice";
RL Plant Cell. 17:1397-1411(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 71..91
FT /accession="MIMAT0001592"
FT /product="osa-miR439d"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 98 BP; 18 A; 26 C; 26 G; 0 T; 28 other;
ccaccuaccc ugucgaacuc acguaguucg acauguaccu gucgaacugu gguuguucga 60
uagguauccc ugucgaaccg cgguuguucg auagggug 98
//
ID osa-MIR439e standard; RNA; OSA; 98 BP.
XX
AC MI0001695;
XX
DE Oryza sativa miR439e stem-loop
XX
RN [1]
RX PUBMED; 15805478.
RA Sunkar R, Girke T, Jain PK, Zhu JK;
RT "Cloning and characterization of microRNAs from rice";
RL Plant Cell. 17:1397-1411(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 71..91
FT /accession="MIMAT0001593"
FT /product="osa-miR439e"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 98 BP; 18 A; 27 C; 27 G; 0 T; 26 other;
ccaccuaccc ugucgaacug acgcaguucg acauguaccu gucgaacugu gguuguucga 60
uagguauccc ugucgaaccg cgguuguucg acagggug 98
//
ID osa-MIR439f standard; RNA; OSA; 96 BP.
XX
AC MI0001696;
XX
DE Oryza sativa miR439f stem-loop
XX
RN [1]
RX PUBMED; 15805478.
RA Sunkar R, Girke T, Jain PK, Zhu JK;
RT "Cloning and characterization of microRNAs from rice";
RL Plant Cell. 17:1397-1411(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 69..89
FT /accession="MIMAT0001594"
FT /product="osa-miR439f"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 96 BP; 18 A; 25 C; 27 G; 0 T; 26 other;
accuacccug ucgaacugac gcaguucgac auguaccugu cgaacugugg uuguucgaua 60
gguaucccug ucgaaccgcg guuguucgac agggug 96
//
ID osa-MIR439g standard; RNA; OSA; 88 BP.
XX
AC MI0001697;
XX
DE Oryza sativa miR439g stem-loop
XX
RN [1]
RX PUBMED; 15805478.
RA Sunkar R, Girke T, Jain PK, Zhu JK;
RT "Cloning and characterization of microRNAs from rice";
RL Plant Cell. 17:1397-1411(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 64..84
FT /accession="MIMAT0001595"
FT /product="osa-miR439g"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 88 BP; 16 A; 22 C; 25 G; 0 T; 25 other;
uccugucgaa cugacgcagu ucgacaugua ccugucgaac ugugguuguu cgauagguau 60
cccugucgaa ccgcgguugu ucgacagg 88
//
ID osa-MIR439h standard; RNA; OSA; 99 BP.
XX
AC MI0001698;
XX
DE Oryza sativa miR439h stem-loop
XX
RN [1]
RX PUBMED; 15805478.
RA Sunkar R, Girke T, Jain PK, Zhu JK;
RT "Cloning and characterization of microRNAs from rice";
RL Plant Cell. 17:1397-1411(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 72..92
FT /accession="MIMAT0001596"
FT /product="osa-miR439h"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 99 BP; 19 A; 28 C; 26 G; 0 T; 26 other;
accaccuacc cugucgaacu cacgcaguuc gacauguacc ugucgaacug ugguuguucg 60
auagguaucc cugucgaacc gcgguuguuc gacagggug 99
//
ID osa-MIR439i standard; RNA; OSA; 125 BP.
XX
AC MI0001700;
XX
DE Oryza sativa miR439i stem-loop
XX
RN [1]
RX PUBMED; 15805478.
RA Sunkar R, Girke T, Jain PK, Zhu JK;
RT "Cloning and characterization of microRNAs from rice";
RL Plant Cell. 17:1397-1411(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 93..113
FT /accession="MIMAT0001598"
FT /product="osa-miR439i"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 125 BP; 31 A; 24 C; 30 G; 0 T; 40 other;
gcagggacau auccaacggg caguguucga uaggggcgug gcuacaguga cacuacaaug 60
uuuuuuucua uuuuuaaaau uauuuaauca caugucgaac cgcgguuguu cgauagguac 120
ccugu 125
//
ID osa-MIR440 standard; RNA; OSA; 120 BP.
XX
AC MI0001701;
XX
DE Oryza sativa miR440 stem-loop
XX
RN [1]
RX PUBMED; 15805478.
RA Sunkar R, Girke T, Jain PK, Zhu JK;
RT "Cloning and characterization of microRNAs from rice";
RL Plant Cell. 17:1397-1411(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 75..98
FT /accession="MIMAT0001599"
FT /product="osa-miR440"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 120 BP; 29 A; 25 C; 32 G; 0 T; 34 other;
auugcuauug uuggugcugg gcucguccug aucacuagga gacucugauc aagcuaggcc 60
uaaacuuaug uauuaguguc uccugaugau cgggacaagg cuaacaccga ugagagcgau 120
//
ID osa-MIR396e standard; RNA; OSA; 184 BP.
XX
AC MI0001703;
XX
DE Oryza sativa miR396e stem-loop
XX
RN [1]
RX PUBMED; 15805478.
RA Sunkar R, Girke T, Jain PK, Zhu JK;
RT "Cloning and characterization of microRNAs from rice";
RL Plant Cell. 17:1397-1411(2005).
XX
RN [2]
RX PUBMED; 19903869.
RA Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
RT "Rice MicroRNA effector complexes and targets";
RL Plant Cell. 21:3421-3435(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0001601"
FT /product="osa-miR396e-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [2]"
FT miRNA 152..175
FT /accession="MIMAT0015159"
FT /product="osa-miR396e-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 184 BP; 34 A; 43 C; 52 G; 0 T; 55 other;
gcgggcaugc uuuccacagg cuuucuugaa cugugaacuc gugggggugu augugcucau 60
guugggauug uggucggugg ccuccaauuc ucugaaaaga aagcugaauu gucgagcucc 120
ccguucuguc uuuggucguc ucuaccuguu gaugguucaa gaaagcccau ggaaaccaug 180
ccgc 184
//
ID osa-MIR443 standard; RNA; OSA; 148 BP.
XX
AC MI0001708;
XX
DE Oryza sativa miR443 stem-loop
XX
RN [1]
RX PUBMED; 15805478.
RA Sunkar R, Girke T, Jain PK, Zhu JK;
RT "Cloning and characterization of microRNAs from rice";
RL Plant Cell. 17:1397-1411(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 38..59
FT /accession="MIMAT0001606"
FT /product="osa-miR443"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 148 BP; 49 A; 24 C; 21 G; 0 T; 54 other;
cgucccauaa aaacaaaccc aaaacuagau gugauauauc acaauacaau aaaucuggau 60
aggagucuau ccagauacuu cuaucuagau uuauuguacu gggauauguc acauauauuc 120
aguuuuauau uuguuuuuuu uuuggacg 148
//
ID osa-MIR444a standard; RNA; OSA; 131 BP.
XX
AC MI0001719;
XX
DE Oryza sativa miR444a stem-loop
XX
RN [1]
RX PUBMED; 15805478.
RA Sunkar R, Girke T, Jain PK, Zhu JK;
RT "Cloning and characterization of microRNAs from rice";
RL Plant Cell. 17:1397-1411(2005).
XX
RN [2]
RX PUBMED; 18353984.
RA Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR,
RA Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ;
RT "Genome-wide analysis for discovery of rice microRNAs reveals natural
RT antisense microRNAs (nat-miRNAs)";
RL Proc Natl Acad Sci U S A. 105:4951-4956(2008).
XX
RN [3]
RX PUBMED; 21791435.
RA Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q;
RT "Differential expression of the microRNAs in superior and inferior
RT spikelets in rice (Oryza sativa)";
RL J Exp Bot. 62:4943-4954(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..40
FT /accession="MIMAT0020918"
FT /product="osa-miR444a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 94..114
FT /accession="MIMAT0005790"
FT /product="osa-miR444a-3p.2"
FT /evidence=experimental
FT /experiment="MPSS [2], Northern [2]"
FT miRNA 99..119
FT /accession="MIMAT0001617"
FT /product="osa-miR444a-3p.1"
FT /evidence=experimental
FT /experiment="cloned [1], MPSS [2], Northern [2]"
XX
SQ Sequence 131 BP; 33 A; 27 C; 34 G; 0 T; 37 other;
augcaauugg gggcagcaag cuagaggugg caacugcaua auuugcaaga aauuguuggc 60
ugaagaucau accgaugaua uucuugcaag uuaugcaguu gcugccucaa gcuugcugcc 120
uccuguugcc a 131
//
ID dre-mir-429a standard; RNA; DRE; 82 BP.
XX
AC MI0001720;
XX
DE Danio rerio miR-429 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
DR ENTREZGENE; 100628648; mir429.
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..72
FT /accession="MIMAT0001624"
FT /product="dre-miR-429a"
FT /evidence=not_experimental
FT /similarity="MI0001641"
XX
SQ Sequence 82 BP; 20 A; 16 C; 18 G; 0 T; 28 other;
cuuguugaug gacgucuuac cagacauggu uagauguaau aacuuguguc uaauacuguc 60
ugguaaugcc guccaucaca ug 82
//
ID hsa-mir-431 standard; RNA; HSA; 114 BP.
XX
AC MI0001721;
XX
DE Homo sapiens miR-431 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32027; MIR431.
DR ENTREZGENE; 574038; MIR431.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..40
FT /accession="MIMAT0001625"
FT /product="hsa-miR-431-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
FT miRNA 63..84
FT /accession="MIMAT0004757"
FT /product="hsa-miR-431-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 114 BP; 21 A; 36 C; 31 G; 0 T; 26 other;
uccugcuugu ccugcgaggu gucuugcagg ccgucaugca ggccacacug acgguaacgu 60
ugcaggucgu cuugcagggc uucucgcaag acgacauccu caucaccaac gacg 114
//
ID rno-mir-431 standard; RNA; RNO; 114 BP.
XX
AC MI0001722;
XX
DE Rattus norvegicus miR-431 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314165; Mir431.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..40
FT /accession="MIMAT0001626"
FT /product="rno-miR-431"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT /similarity="MI0001721"
XX
SQ Sequence 114 BP; 20 A; 36 C; 33 G; 0 T; 25 other;
uccugcgcgu ccugcgaggu gucuugcagg ccgucaugca ggccacacug acgguaacgu 60
ugcaggucgu cuugcagggc uucucgcaag acgacaucuu caucgccaac gacg 114
//
ID hsa-mir-433 standard; RNA; HSA; 93 BP.
XX
AC MI0001723;
XX
DE Homo sapiens miR-433 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 32026; MIR433.
DR ENTREZGENE; 574034; MIR433.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0026554"
FT /product="hsa-miR-433-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 64..85
FT /accession="MIMAT0001627"
FT /product="hsa-miR-433-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3]"
XX
SQ Sequence 93 BP; 19 A; 19 C; 31 G; 0 T; 24 other;
ccggggagaa guacggugag ccugucauua uucagagagg cuagauccuc uguguugaga 60
aggaucauga ugggcuccuc gguguucucc agg 93
//
ID rno-mir-433 standard; RNA; RNO; 93 BP.
XX
AC MI0001724;
XX
DE Rattus norvegicus miR-433 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314197; Mir433.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0017192"
FT /product="rno-miR-433-5p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
FT miRNA 64..85
FT /accession="MIMAT0001628"
FT /product="rno-miR-433-3p"
FT /evidence=experimental
FT /experiment="cloned [2], SOLiD [3]"
FT /similarity="MI0001723"
XX
SQ Sequence 93 BP; 19 A; 19 C; 31 G; 0 T; 24 other;
ccggggagaa guacggugag ccugucauua uucagagagg cuagauccuc uguguugaga 60
aggaucauga ugggcuccuc gguguucucc agg 93
//
ID hsa-mir-329-1 standard; RNA; HSA; 80 BP.
XX
AC MI0001725;
XX
DE Homo sapiens miR-329-1 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [3]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 32050; MIR329-1.
DR ENTREZGENE; 574408; MIR329-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0026555"
FT /product="hsa-miR-329-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 50..71
FT /accession="MIMAT0001629"
FT /product="hsa-miR-329-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], array-cloned [2], Illumina
FT [5]"
XX
SQ Sequence 80 BP; 18 A; 16 C; 18 G; 0 T; 28 other;
gguaccugaa gagagguuuu cuggguuucu guuucuuuaa ugaggacgaa acacaccugg 60
uuaaccucuu uuccaguauc 80
//
ID hsa-mir-329-2 standard; RNA; HSA; 84 BP.
XX
AC MI0001726;
XX
DE Homo sapiens miR-329-2 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [3]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 32051; MIR329-2.
DR ENTREZGENE; 574409; MIR329-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0026555"
FT /product="hsa-miR-329-5p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
FT miRNA 52..73
FT /accession="MIMAT0001629"
FT /product="hsa-miR-329-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], array-cloned [2], Illumina
FT [5]"
XX
SQ Sequence 84 BP; 19 A; 16 C; 19 G; 0 T; 30 other;
gugguaccug aagagagguu uucuggguuu cuguuucuuu auugaggacg aaacacaccu 60
gguuaaccuc uuuuccagua ucaa 84
//
ID hsa-mir-451a standard; RNA; HSA; 72 BP.
XX
AC MI0001729;
XX
DE Homo sapiens miR-451a stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32053; MIR451.
DR ENTREZGENE; 574411; MIR451.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0001631"
FT /product="hsa-miR-451a"
FT /evidence=experimental
FT /experiment="cloned [1-3]"
XX
SQ Sequence 72 BP; 20 A; 13 C; 17 G; 0 T; 22 other;
cuugggaaug gcaaggaaac cguuaccauu acugaguuua guaaugguaa ugguucucuu 60
gcuauaccca ga 72
//
ID mmu-mir-451a standard; RNA; MMU; 72 BP.
XX
AC MI0001730;
XX
DE Mus musculus miR-451 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619412; Mir451.
DR ENTREZGENE; 723870; Mir451.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0001632"
FT /product="mmu-miR-451a"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT /similarity="MI0001729"
XX
SQ Sequence 72 BP; 17 A; 16 C; 18 G; 0 T; 21 other;
cuugggaaug gcgaggaaac cguuaccauu acugaguuua guaaugguaa cgguucucuu 60
gcugcuccca ca 72
//
ID rno-mir-451 standard; RNA; RNO; 72 BP.
XX
AC MI0001731;
XX
DE Rattus norvegicus miR-451 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 20403161.
RA Linsen SE, de Wit E, de Bruijn E, Cuppen E;
RT "Small RNA expression and strain specificity in the rat";
RL BMC Genomics. 11:249(2010).
XX
DR ENTREZGENE; 100314070; Mir451.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0001633"
FT /product="rno-miR-451-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Northern [2], SOLiD [3]"
FT /similarity="MI0001729"
FT miRNA 44..66
FT /accession="MIMAT0017193"
FT /product="rno-miR-451-3p"
FT /evidence=experimental
FT /experiment="SOLiD [3]"
XX
SQ Sequence 72 BP; 17 A; 14 C; 18 G; 0 T; 23 other;
uuugggaaug gcgaggaaac cguuaccauu acugaguuua guaaugguaa ugguucucuu 60
gcugcuccca ca 72
//
ID dre-mir-451 standard; RNA; DRE; 60 BP.
XX
AC MI0001732;
XX
DE Danio rerio miR-451 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628649; mir451.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001634"
FT /product="dre-miR-451"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT /similarity="MI0001729"
XX
SQ Sequence 60 BP; 14 A; 11 C; 17 G; 0 T; 18 other;
agaggcggcg aaaccguuac cauuacugag uuuaguaaug guaaggguuc ugcugccuuu 60
//
ID hsa-mir-452 standard; RNA; HSA; 85 BP.
XX
AC MI0001733;
XX
DE Homo sapiens miR-452 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [3]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 32054; MIR452.
DR ENTREZGENE; 574412; MIR452.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001635"
FT /product="hsa-miR-452-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-5], array-cloned [2]"
FT miRNA 58..79
FT /accession="MIMAT0001636"
FT /product="hsa-miR-452-3p"
FT /evidence=experimental
FT /experiment="array-cloned [2], cloned [4]"
XX
SQ Sequence 85 BP; 25 A; 17 C; 18 G; 0 T; 25 other;
gcuaagcacu uacaacuguu ugcagaggaa acugagacuu uguaacuaug ucucagucuc 60
aucugcaaag aaguaagugc uuugc 85
//
ID mmu-mir-452 standard; RNA; MMU; 85 BP.
XX
AC MI0001734;
XX
DE Mus musculus miR-452 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [3]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619450; Mir452.
DR ENTREZGENE; 723919; Mir452.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0001637"
FT /product="mmu-miR-452-5p"
FT /evidence=experimental
FT /experiment="Illumina [2-3]"
FT /similarity="MI0001733"
FT miRNA 53..74
FT /accession="MIMAT0017194"
FT /product="mmu-miR-452-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 85 BP; 25 A; 16 C; 19 G; 0 T; 25 other;
gcuaagcagu uacaacuguu ugcagaggaa acugagacuu uauaacuaug ucucagucuc 60
aucugcaaag agguaagugc uuugc 85
//
ID hsa-mir-409 standard; RNA; HSA; 79 BP.
XX
AC MI0001735;
XX
DE Homo sapiens miR-409 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [3]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32055; MIR409.
DR ENTREZGENE; 574413; MIR409.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [4]. The 5' end of the miRNA may be
CC offset with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0001638"
FT /product="hsa-miR-409-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4]"
FT miRNA 47..68
FT /accession="MIMAT0001639"
FT /product="hsa-miR-409-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3-4], array-cloned [2]"
XX
SQ Sequence 79 BP; 16 A; 19 C; 23 G; 0 T; 21 other;
ugguacucgg ggagagguua cccgagcaac uuugcaucug gacgacgaau guugcucggu 60
gaaccccuuu ucgguauca 79
//
ID mtr-MIR162 standard; RNA; MTR; 124 BP.
XX
AC MI0001738;
XX
DE Medicago truncatula miR162 stem-loop
XX
RN [1]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 19555436.
RA Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL,
RA Wiley GB, Roe BA, Zhang W, Sunkar R;
RT "Cloning and characterization of small RNAs from Medicago truncatula
RT reveals four novel legume-specific microRNA families";
RL New Phytol. 184:85-98(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 87..107
FT /accession="MIMAT0001640"
FT /product="mtr-miR162"
FT /evidence=experimental
FT /experiment="Northern [3]"
FT /similarity="MI0000194"
XX
SQ Sequence 124 BP; 29 A; 31 C; 26 G; 0 T; 38 other;
agaugaggug aaguucguca cuggaugcag cgguucaucg aucuguuccu gaauuuuguu 60
ugucucguaa aacaaacaug aaucggucga uaaaccucug cauccagcgc ucacuuuccc 120
cucu 124
//
ID mtr-MIR160a standard; RNA; MTR; 119 BP.
XX
AC MI0001739;
XX
DE Medicago truncatula miR160 stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19555436.
RA Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL,
RA Wiley GB, Roe BA, Zhang W, Sunkar R;
RT "Cloning and characterization of small RNAs from Medicago truncatula
RT reveals four novel legume-specific microRNA families";
RL New Phytol. 184:85-98(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001641"
FT /product="mtr-miR160a"
FT /evidence=experimental
FT /experiment="454 [2], Northern [2]"
FT /similarity="MI0000664"
XX
SQ Sequence 119 BP; 29 A; 19 C; 28 G; 0 T; 43 other;
agauauauau acuaauugcg ugccuggcuc ccuguaugcc auuuguagag uucaucaaga 60
uguugaugac uuuaaugaau ggcgugcgag gagccaugca uguuguguau auuuucuau 119
//
ID mtr-MIR166a standard; RNA; MTR; 121 BP.
XX
AC MI0001740;
XX
DE Medicago truncatula miR166 stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19555436.
RA Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL,
RA Wiley GB, Roe BA, Zhang W, Sunkar R;
RT "Cloning and characterization of small RNAs from Medicago truncatula
RT reveals four novel legume-specific microRNA families";
RL New Phytol. 184:85-98(2009).
XX
RN [3]
RX PUBMED; 23572382.
RA Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA,
RA Imin N;
RT "microRNA profiling of root tissues and root forming explant cultures in
RT Medicago truncatula";
RL Planta. 238:91-105(2013).
XX
FH Key Location/Qualifiers
FH
FT miRNA 82..102
FT /accession="MIMAT0001642"
FT /product="mtr-miR166a"
FT /evidence=experimental
FT /experiment="454 [2], Northern [2], Illumina [3]"
FT /similarity="MI0000673"
XX
SQ Sequence 121 BP; 34 A; 29 C; 29 G; 0 T; 29 other;
cagacauacg aaggaguuca ggggaauggu gucugauucg agaccauucg ucacaaguaa 60
acaguagccu ugagaaugau cucggaccag gcuucauucc cccuagcuca uaguaucaug 120
c 121
//
ID mtr-MIR169a standard; RNA; MTR; 121 BP.
XX
AC MI0001741;
XX
DE Medicago truncatula miR169a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19555436.
RA Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL,
RA Wiley GB, Roe BA, Zhang W, Sunkar R;
RT "Cloning and characterization of small RNAs from Medicago truncatula
RT reveals four novel legume-specific microRNA families";
RL New Phytol. 184:85-98(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001643"
FT /product="mtr-miR169a"
FT /evidence=not_experimental
XX
SQ Sequence 121 BP; 28 A; 26 C; 31 G; 0 T; 36 other;
aagaggcaga gagaguaaug cagccaagga ugacuugccg acaacauugg cgaauguuca 60
ugugauuucu gccucauugu gccggcaagu uguccuuggc uauguuaguc ucucaucuuc 120
u 121
//
ID mtr-MIR399b standard; RNA; MTR; 112 BP.
XX
AC MI0001743;
XX
DE Medicago truncatula miR399b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 73..93
FT /accession="MIMAT0001645"
FT /product="mtr-miR399b"
FT /evidence=not_experimental
FT /similarity="MI0001022"
XX
SQ Sequence 112 BP; 30 A; 17 C; 28 G; 0 T; 37 other;
ucauagggca ugucucuauu gguaggugau auggugauau uucauuugaa uuagaggcuu 60
cagaaauuca cuugccaaag gagagcugcc cugugagugu uuagcuuaaa ca 112
//
ID mtr-MIR399d standard; RNA; MTR; 129 BP.
XX
AC MI0001744;
XX
DE Medicago truncatula miR399d stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 90..110
FT /accession="MIMAT0001646"
FT /product="mtr-miR399d"
FT /evidence=not_experimental
FT /similarity="MI0001022"
XX
SQ Sequence 129 BP; 40 A; 22 C; 28 G; 0 T; 39 other;
uaaaguaagc aaaucaguca uagggcaugu cucuauuggc aggugauaug gugauauuuc 60
auuugacuuu aaggcucuaa aaauucacuu gccaaaggag agcugcccua cgaguguuua 120
gcuuaaaca 129
//
ID mtr-MIR393a standard; RNA; MTR; 135 BP.
XX
AC MI0001745;
XX
DE Medicago truncatula miR393 stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19555436.
RA Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL,
RA Wiley GB, Roe BA, Zhang W, Sunkar R;
RT "Cloning and characterization of small RNAs from Medicago truncatula
RT reveals four novel legume-specific microRNA families";
RL New Phytol. 184:85-98(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001647"
FT /product="mtr-miR393a"
FT /evidence=experimental
FT /experiment="Northern [2]"
FT /similarity="MI0001026"
XX
SQ Sequence 135 BP; 37 A; 29 C; 20 G; 0 T; 49 other;
aacugcaacu ugaggaggca uccaaaggga ucgcauugau ccuauaauau uucaacuuua 60
gucacuuuaa uuuucucuca uauaauacuu aauugggauc augccauccc uuuggauuuc 120
uccuuuagua gcuac 135
//
ID mtr-MIR395a standard; RNA; MTR; 135 BP.
XX
AC MI0001746;
XX
DE Medicago truncatula miR395a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19555436.
RA Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL,
RA Wiley GB, Roe BA, Zhang W, Sunkar R;
RT "Cloning and characterization of small RNAs from Medicago truncatula
RT reveals four novel legume-specific microRNA families";
RL New Phytol. 184:85-98(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 96..116
FT /accession="MIMAT0001648"
FT /product="mtr-miR395a"
FT /evidence=experimental
FT /experiment="Northern [2]"
FT /similarity="MI0001033"
XX
SQ Sequence 135 BP; 35 A; 21 C; 28 G; 0 T; 51 other;
uuuuuguuga uuguuucuua gaguuccuuu gaacgcuuca ugcaugagaa uauguauuug 60
gucuaauauc cauuagaaaa gauaguucuu caucaaugaa guguuugggg gaacucuugg 120
guucaaccag cacca 135
//
ID mtr-MIR395b standard; RNA; MTR; 124 BP.
XX
AC MI0001747;
XX
DE Medicago truncatula miR395b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 85..105
FT /accession="MIMAT0001649"
FT /product="mtr-miR395b"
FT /evidence=not_experimental
FT /similarity="MI0001043"
XX
SQ Sequence 124 BP; 36 A; 17 C; 25 G; 0 T; 46 other;
uacuuguuga uuuucucuug gaguuccucu gaaugcuuca aacaugagac aaucuugaua 60
gaaauuaugg auaguucuug uucaaugaag uauuuggggg aacucuugga auugaaucaa 120
caua 124
//
ID mtr-MIR399c standard; RNA; MTR; 119 BP.
XX
AC MI0001748;
XX
DE Medicago truncatula miR399c stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 80..100
FT /accession="MIMAT0001650"
FT /product="mtr-miR399c"
FT /evidence=not_experimental
FT /similarity="MI0001054"
XX
SQ Sequence 119 BP; 33 A; 17 C; 31 G; 0 T; 38 other;
guucugcugu ugaggaauga uagggaaaau cucuuuuggc agagaggagu aaaaaucuua 60
aacaggaaug uuucugguuu gccaaaggag auuugcccug ccauuuuuga cagcuauug 119
//
ID mtr-MIR399a standard; RNA; MTR; 134 BP.
XX
AC MI0001749;
XX
DE Medicago truncatula miR399a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19555436.
RA Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL,
RA Wiley GB, Roe BA, Zhang W, Sunkar R;
RT "Cloning and characterization of small RNAs from Medicago truncatula
RT reveals four novel legume-specific microRNA families";
RL New Phytol. 184:85-98(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 95..115
FT /accession="MIMAT0001651"
FT /product="mtr-miR399a"
FT /evidence=experimental
FT /experiment="Northern [2]"
FT /similarity="MI0001059"
XX
SQ Sequence 134 BP; 34 A; 29 C; 29 G; 0 T; 42 other;
uccaaguugc aguugaauua cagggugagu ucuccauugg cagguagcua gucacuauau 60
gauaugcauu gcaaucauuu cuuagugugc aaucugccaa aggagauuug cccagcgauu 120
cuccugcaac ucua 134
//
ID mtr-MIR399e standard; RNA; MTR; 134 BP.
XX
AC MI0001750;
XX
DE Medicago truncatula miR399e stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 95..115
FT /accession="MIMAT0001652"
FT /product="mtr-miR399e"
FT /evidence=not_experimental
FT /similarity="MI0001059"
XX
SQ Sequence 134 BP; 36 A; 29 C; 29 G; 0 T; 40 other;
uccaaguugc aguugaauua cagggugagu ucuccauugg cagguagcua gccacuauau 60
gauaugcauu gcaaucauca cuuagugugu aaucugccaa aggagauuug cccagcgauu 120
cucaugcaac ucua 134
//
ID mtr-MIR319a standard; RNA; MTR; 207 BP.
XX
AC MI0001751;
XX
DE Medicago truncatula miR319 stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19555436.
RA Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL,
RA Wiley GB, Roe BA, Zhang W, Sunkar R;
RT "Cloning and characterization of small RNAs from Medicago truncatula
RT reveals four novel legume-specific microRNA families";
RL New Phytol. 184:85-98(2009).
XX
RN [3]
RX PUBMED; 23572382.
RA Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA,
RA Imin N;
RT "microRNA profiling of root tissues and root forming explant cultures in
RT Medicago truncatula";
RL Planta. 238:91-105(2013).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0026556"
FT /product="mtr-miR319a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 169..188
FT /accession="MIMAT0001653"
FT /product="mtr-miR319a-3p"
FT /evidence=experimental
FT /experiment="454 [2], Illumina [3]"
FT /similarity="MI0001086"
XX
SQ Sequence 207 BP; 57 A; 31 C; 46 G; 0 T; 73 other;
auuauuagaa auagaugaag agagcuuccu ucaguccacu cauggaaggg uaagggguuu 60
gaauuaccug cugacucauu gauucaaaca caauagacaa uuaugggguu augcuauugu 120
gaauguguga augaugcagg aggugaauuu cuuccuuuuc uucuuugcuu ggacugaagg 180
gagcucccuu uuucuauuua uaaauua 207
//
ID mtr-MIR156a standard; RNA; MTR; 460 BP.
XX
AC MI0001752;
XX
DE Medicago truncatula miR156 stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19555436.
RA Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL,
RA Wiley GB, Roe BA, Zhang W, Sunkar R;
RT "Cloning and characterization of small RNAs from Medicago truncatula
RT reveals four novel legume-specific microRNA families";
RL New Phytol. 184:85-98(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001654"
FT /product="mtr-miR156a"
FT /evidence=experimental
FT /experiment="454 [2], Northern [2]"
FT /similarity="MI0001090"
XX
SQ Sequence 460 BP; 172 A; 82 C; 69 G; 0 T; 137 other;
agccaugaau caguccgaga ugacagaaga gagagagcac acccaccuga uuacaaguaa 60
caaaaaacua ccaacuauca acauuuuguc uacuaugaag aaaaucacau gucuagacua 120
uaguuacgaa uggaagauac auucaaugau guuuaugaaa auuugagacg gucgaggacu 180
auaguuacuc uaucgcauac auuuaaugac aaaaaaaauu guguacucuu auuuauuuuc 240
aauacaucuu cauucaauuu cuaugcaaga aucaaaaugc aguauaaaaa auugcauuca 300
auaucauggu aaaaaaauug uucaaaaaaa guaaauauca ugguaaaaaa aucauuagau 360
uuugcaauaa guaagaguca aguuuuaccu ugugaggaau uccucccaac agaaucaugg 420
gagcucuuuc uucuucucuc auugugcccu gccagucucc 460
//
ID mtr-MIR171a standard; RNA; MTR; 114 BP.
XX
AC MI0001753;
XX
DE Medicago truncatula miR171 stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 75..95
FT /accession="MIMAT0001655"
FT /product="mtr-miR171a"
FT /evidence=not_experimental
FT /similarity="MI0001137"
XX
SQ Sequence 114 BP; 30 A; 21 C; 20 G; 0 T; 43 other;
ugaauucccc uccgcuuuuu gauguuggcu ugucucaauc aaaucaaagu ucuugaaauu 60
ugaguucuuu agucugauug agucgugcca auaucauauu aagcgauaaa aguc 114
//
ID sof-MIR156 standard; RNA; SOF; 137 BP.
XX
AC MI0001754;
XX
DE Saccharum officinarum miR156 stem-loop
XX
RN [1]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..40
FT /accession="MIMAT0001656"
FT /product="sof-miR156"
FT /evidence=not_experimental
FT /similarity="MI0000654"
XX
SQ Sequence 137 BP; 31 A; 31 C; 40 G; 0 T; 35 other;
gguggagaag agguggaggc ugacagaaga gagugagcac acauggugcc uuucuugcau 60
gaugaacgau cgagagguuc augcucgaag cuaugcgugc ucacuucucu cucugucagc 120
cguuagaacu cucucuc 137
//
ID sof-MIR396 standard; RNA; SOF; 134 BP.
XX
AC MI0001755;
XX
DE Saccharum officinarum miR396 stem-loop
XX
RN [1]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001657"
FT /product="sof-miR396"
FT /evidence=not_experimental
FT /similarity="MI0001046"
XX
SQ Sequence 134 BP; 36 A; 32 C; 34 G; 0 T; 32 other;
agauggccuu cuuugugauc uuccacagcu uucuugaacu gcaucucuaa gaggagcagc 60
ucgaagccuc gaacucuacc ugcaugagca ggugcaguuc aauaaagcug ugggaaacug 120
cagagagagg ccaa 134
//
ID sof-MIR159a standard; RNA; SOF; 265 BP.
XX
AC MI0001756;
XX
DE Saccharum officinarum miR159a stem-loop
XX
RN [1]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 226..246
FT /accession="MIMAT0001658"
FT /product="sof-miR159a"
FT /evidence=not_experimental
FT /similarity="MI0001093"
XX
SQ Sequence 265 BP; 47 A; 63 C; 74 G; 0 T; 81 other;
ccugaugcuu ggauuugaag cggagcuccu aucauuccaa ugaagggccg uucugaaggg 60
uuguuccgcu gcucguucau gguucccacu auccuaucuc aucauguaug uguguaugua 120
uuuucgagag ggaggagagg agcuagacuc ucaugguggu cgucuuugag auaggcuugu 180
gguuugcaug accgaggagc ugcaccgucc ccuugcuggc cgcucuuugg auugaaggga 240
gcucugcauc cugauccauc caucc 265
//
ID sof-MIR159b standard; RNA; SOF; 266 BP.
XX
AC MI0001757;
XX
DE Saccharum officinarum miR159b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 227..247
FT /accession="MIMAT0001659"
FT /product="sof-miR159b"
FT /evidence=not_experimental
FT /similarity="MI0001093"
XX
SQ Sequence 266 BP; 48 A; 64 C; 76 G; 0 T; 78 other;
ccugaugcuu ggauuugaag cggagcuccu aucauuccaa ugaagggccg uucugaaggg 60
ugguuccgcu gcucguucau gguucccacu auccuaucuc aucauguaug uguguaugua 120
uuuucggaga gggaggagag gagcuagacu cucacggugg ucgucuuuga gauaggcuug 180
ugguuugcau gaccgaggag cugcaccguc cccuugcugg ccgcucuuug gauugaaggg 240
agcucugcau ccugaaccau ccaucc 266
//
ID sof-MIR159d standard; RNA; SOF; 265 BP.
XX
AC MI0001758;
XX
DE Saccharum officinarum miR159d stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 226..246
FT /accession="MIMAT0001660"
FT /product="sof-miR159d"
FT /evidence=not_experimental
FT /similarity="MI0001093"
XX
SQ Sequence 265 BP; 48 A; 64 C; 73 G; 0 T; 80 other;
ccugaugcuu ggauuugaag cggagcuccu aucauuccaa ugaagggccg uucugaaggg 60
uuguuccgcu gcucguucau gguucccacu auccuaucuc aucauguaug uguguaugua 120
uuuucgagag ggaggagagg agcuagacuc ucaugggggu cgucuaugag auacgcuugu 180
gguuugcaug accgaugagc ugcaccgucc ccuugcuggc cgcucuuugg auugaaggga 240
gcucugcauc cugauccauc caucc 265
//
ID sof-MIR159e standard; RNA; SOF; 264 BP.
XX
AC MI0001759;
XX
DE Saccharum officinarum miR159e stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 225..245
FT /accession="MIMAT0001661"
FT /product="sof-miR159e"
FT /evidence=not_experimental
FT /similarity="MI0001093"
XX
SQ Sequence 264 BP; 49 A; 62 C; 73 G; 0 T; 80 other;
cugaugcuug gauuugaagc ggagcuccua ucauuccaau gaagggccgu ucugaagggu 60
gguuccgcug cucguucaug guucccacua uccuaucuca ucauguaugu guguauguau 120
uuucgagagg gaggagagga gcuagacucu cacggugguc gucuuugaga uaggcuugug 180
guuugcauga ccgaagagcu gcaccguccc cuugcuggcc gcucuuugga uugaaaggag 240
cucuugcauc ugauccaucc aucc 264
//
ID sof-MIR159c standard; RNA; SOF; 238 BP.
XX
AC MI0001760;
XX
DE Saccharum officinarum miR159c stem-loop
XX
RN [1]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 199..219
FT /accession="MIMAT0001662"
FT /product="sof-miR159c"
FT /evidence=not_experimental
FT /similarity="MI0001097"
XX
SQ Sequence 238 BP; 54 A; 62 C; 65 G; 0 T; 57 other;
ugaagacgac gacgaagaag aagauggcga agaaaaguga ucgaagagcu cccuucgauc 60
caauccagga ggggaagugg ucgguugcag cugccgguuc auggaugccu cucuggugca 120
gcaaugacua augcucaccu gcacuugcau gggugugcau gacccgggag augaacccac 180
caucaucuuu cccucgugcu uggauugaag ggagcuccuc ucucuuuccu cucucucu 238
//
ID sof-MIR167a standard; RNA; SOF; 188 BP.
XX
AC MI0001761;
XX
DE Saccharum officinarum miR167a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001663"
FT /product="sof-miR167a"
FT /evidence=not_experimental
FT /similarity="MI0001113"
XX
SQ Sequence 188 BP; 49 A; 35 C; 54 G; 0 T; 50 other;
aguggugcac cacaaguugg ugaagcugcc agcaugaucu gaugguggua uauaugaaua 60
uaugaugucu uuaccucuga ucucucccug acugucaccg auccaugaau ccaggaugag 120
gggagggaag aaagagggau aaugagcauc aggucaugcu guaguuucau cugcuggugg 180
gagcacau 188
//
ID sof-MIR167b standard; RNA; SOF; 188 BP.
XX
AC MI0001762;
XX
DE Saccharum officinarum miR167b stem-loop
XX
RN [1]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001664"
FT /product="sof-miR167b"
FT /evidence=not_experimental
FT /similarity="MI0001113"
XX
SQ Sequence 188 BP; 49 A; 34 C; 55 G; 0 T; 50 other;
aguggugcac cacaaguugg ugaagcugcc agcaugaucu gaugguggua uauaugaaua 60
uaugaugucu uuaccucuga ucucucccug acugucacgg auccaugaau ccaggaugag 120
gggagggaag aaagagggau aaugagcauc aggucaugcu guaguuucau cugcuggugg 180
gagcacau 188
//
ID sof-MIR168a standard; RNA; SOF; 104 BP.
XX
AC MI0001763;
XX
DE Saccharum officinarum miR168a stem-loop
XX
RN [1]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001665"
FT /product="sof-miR168a"
FT /evidence=not_experimental
FT /similarity="MI0001115"
XX
SQ Sequence 104 BP; 14 A; 42 C; 37 G; 0 T; 11 other;
gccgccgcgc cgccucgggc ucgcuuggug cagaucggga cccgccgccc ggccgacggg 60
acggaucccg ccuugcacca agugaaucgg agccggcgca gcca 104
//
ID sof-MIR168b standard; RNA; SOF; 103 BP.
XX
AC MI0001764;
XX
DE Saccharum officinarum miR168b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..40
FT /accession="MIMAT0001666"
FT /product="sof-miR168b"
FT /evidence=not_experimental
FT /similarity="MI0001115"
XX
SQ Sequence 103 BP; 14 A; 42 C; 36 G; 0 T; 11 other;
ccgccccgcg ccgucugggc ucgcuugggc agaucgggac ccgccgcccg gccgacggga 60
cggaucccgc cuugcaccaa gugaaucgga gccggcgcag cca 103
//
ID sof-MIR408a standard; RNA; SOF; 283 BP.
XX
AC MI0001765;
XX
DE Saccharum officinarum miR408a stem-loop
XX
RN [1]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 244..264
FT /accession="MIMAT0001667"
FT /product="sof-miR408a"
FT /evidence=not_experimental
FT /similarity="MI0001149"
XX
SQ Sequence 283 BP; 60 A; 71 C; 81 G; 0 T; 71 other;
agaagauggg uaugguugga gacagggaug aggcagagca ugggaugagg ccaucaacaa 60
aauuuccaau uucuguccuc cgcuaggccg cuacugcauu ucuguuugcu ugcucacaaa 120
acggagggau uugugagagu uaucaggcag aaagaacaaa gaaggugccu cccuggugaa 180
guggugaugg ccugaccuga gacggcugag agcucagcug guguccuguu guugcuuccu 240
ccccugcacu gccucuuccc uggcucccca ccguugcccu ugc 283
//
ID sof-MIR408b standard; RNA; SOF; 286 BP.
XX
AC MI0001766;
XX
DE Saccharum officinarum miR408b stem-loop
XX
RN [1]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 247..267
FT /accession="MIMAT0001668"
FT /product="sof-miR408b"
FT /evidence=not_experimental
FT /similarity="MI0001149"
XX
SQ Sequence 286 BP; 60 A; 69 C; 85 G; 0 T; 72 other;
agaagauggg uaugguugga gacagggaug aggcagagca ugggaugggg ccaucaacaa 60
aauuuccaau uucuguccuc cgcuaggccg cuacugcauu uauguuugcu ugcucacaaa 120
acggagggau uugugagagu uaucaggcag aaagaacaaa gaaggugccu cccuggugaa 180
guggugaugg ccugaccuga gagggcugag agcucagcug guguccuggu guuguugcuu 240
ccuccccugc acugccucuu cccuggcucc ccaccguugc ccuugc 286
//
ID sof-MIR408c standard; RNA; SOF; 286 BP.
XX
AC MI0001767;
XX
DE Saccharum officinarum miR408c stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 247..267
FT /accession="MIMAT0001669"
FT /product="sof-miR408c"
FT /evidence=not_experimental
FT /similarity="MI0001149"
XX
SQ Sequence 286 BP; 59 A; 70 C; 85 G; 0 T; 72 other;
agaagauggg uaugguugga gacagggaug aggcagagca ugggaugggg ccaucaacaa 60
aauuuccaau uucuguccuc cgcuaggccg cuacugcauu ucuguuugcu ugcucacaaa 120
acggagggau uugugagagu uaucaggcag aaagaacaaa gaaggugccu cccuggugaa 180
guggugaugg ccugaccuga gagggcugag agcucagcug guguccuggu guuguugcuu 240
ccuccccugc acugccucuu cccuggcucc ccaccguugc ccuugc 286
//
ID sof-MIR408d standard; RNA; SOF; 215 BP.
XX
AC MI0001768;
XX
DE Saccharum officinarum miR408d stem-loop
XX
RN [1]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 176..196
FT /accession="MIMAT0001670"
FT /product="sof-miR408d"
FT /evidence=not_experimental
FT /similarity="MI0001149"
XX
SQ Sequence 215 BP; 39 A; 60 C; 62 G; 0 T; 54 other;
ggaagguaug uuugauugga gacagggacg aggcagagca ugggaugggg ccaucaacaa 60
aauuuccaau uuccguuugc uugcucacaa aacgaaggug ccugccuccc uggugauggc 120
cugaccugag agggcugaga gcucagcugg uguccuggug uuguugcuuc caccccugca 180
cugccucuuc ccuggcuccc caccguugcc cuugc 215
//
ID sof-MIR408e standard; RNA; SOF; 283 BP.
XX
AC MI0001769;
XX
DE Saccharum officinarum miR408e stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 244..264
FT /accession="MIMAT0001671"
FT /product="sof-miR408e"
FT /evidence=not_experimental
FT /similarity="MI0001149"
XX
SQ Sequence 283 BP; 64 A; 66 C; 81 G; 0 T; 72 other;
agaagauggg uaugguugga gacagggaug aggcagagca ugggaugagg ccaucaacaa 60
aauuuccaau uucuguccuc cgcuaggccg cuacugcauu uauguuugcu ugcucacaaa 120
acggagggau uugugagagu uaucaggcag aaagaacaaa gaaggugccu cccuggugaa 180
guggugaugg ccugaccuga gacggaugag agcucagcug guguccuguu guugcuuacu 240
ucccugcacu gacucuuccc uggcucccca ccguugcccu ugc 283
//
ID gma-MIR156d standard; RNA; GMA; 151 BP.
XX
AC MI0001770;
XX
DE Glycine max miR156d stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 18402695.
RA Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
RT "Novel and nodulation-regulated microRNAs in soybean roots";
RL BMC Genomics. 9:160(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001672"
FT /product="gma-miR156d"
FT /evidence=experimental
FT /experiment="454 [1]"
FT /similarity="MI0000184"
XX
SQ Sequence 151 BP; 43 A; 29 C; 27 G; 0 T; 52 other;
cuacuuggua auuaagguug uugacagaag auagagagca cagaugauga uaugcauauu 60
auauaauaua uagcagggaa cucaugauga auugugcauc uuacuccuuu gugcucucua 120
uacuucuguc aucaccuuca gccuccauuu c 151
//
ID gma-MIR156e standard; RNA; GMA; 124 BP.
XX
AC MI0001771;
XX
DE Glycine max miR156e stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 25747880.
RA Zhao M, Meyers BC, Cai C, Xu W, Ma J;
RT "Evolutionary patterns and coevolutionary consequences of MIRNA genes and
RT microRNA targets triggered by multiple mechanisms of genomic duplications
RT in soybean";
RL Plant Cell. 27:546-562(2015).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001673"
FT /product="gma-miR156e"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000184"
XX
SQ Sequence 124 BP; 28 A; 30 C; 30 G; 0 T; 36 other;
aggagguguu ggugaugcug cugacagaag auagagagca cugaugauga aaugcaugaa 60
agggaauggc aucucacucc uuugugcucu cuagucuucu gucaucaucc uucucccucc 120
ccuc 124
//
ID gma-MIR156c standard; RNA; GMA; 185 BP.
XX
AC MI0001772;
XX
DE Glycine max miR156c stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 18402695.
RA Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
RT "Novel and nodulation-regulated microRNAs in soybean roots";
RL BMC Genomics. 9:160(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 146..166
FT /accession="MIMAT0001674"
FT /product="gma-miR156c"
FT /evidence=experimental
FT /experiment="454 [1]"
FT /similarity="MI0000185"
XX
SQ Sequence 185 BP; 54 A; 42 C; 41 G; 0 T; 48 other;
acuugaccac uaggcuuauc ucuuuccguu ucugagcaug cauacucauu cacagcauca 60
aaaugcacag auccugaugg agauugcaca gggcagguga ugcuagauug caccauacuc 120
aacucuggac uuugugauug aaguguugac agaagauaga gagcacaacc ugagucaaag 180
gaucc 185
//
ID gma-MIR159a standard; RNA; GMA; 214 BP.
XX
AC MI0001773;
XX
DE Glycine max miR159a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 18402695.
RA Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
RT "Novel and nodulation-regulated microRNAs in soybean roots";
RL BMC Genomics. 9:160(2008).
XX
RN [3]
RX PUBMED; 21663675.
RA Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA,
RA Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL,
RA Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF,
RA Pereira GA, Margis R;
RT "Identification of novel soybean microRNAs involved in abiotic and biotic
RT stresses";
RL BMC Genomics. 12:307(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0020919"
FT /product="gma-miR159a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 175..195
FT /accession="MIMAT0001675"
FT /product="gma-miR159a-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [3]"
FT /similarity="MI0000189"
XX
SQ Sequence 214 BP; 47 A; 42 C; 48 G; 0 T; 77 other;
aauuaaaggg gauuaugaag uggagcuccu ugaaguccaa uugaggaucu uacuggguga 60
auugagcugc uuagcuaugg aucccacagu ucuacccauc aauaagugcu uuugugguag 120
ucuuguggcu uccauaucug gggagcuuca uuugccuuua uaguauuaac cuucuuugga 180
uugaagggag cucuacaccc uucucuucuu uucu 214
//
ID gma-MIR160a standard; RNA; GMA; 119 BP.
XX
AC MI0001774;
XX
DE Glycine max miR160 stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 18402695.
RA Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
RT "Novel and nodulation-regulated microRNAs in soybean roots";
RL BMC Genomics. 9:160(2008).
XX
RN [3]
RX PUBMED; 22156213.
RA Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z,
RA Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ,
RA Meyers BC;
RT "MicroRNAs as master regulators of the plant NB-LRR defense gene family
RT via the production of phased, trans-acting siRNAs";
RL Genes Dev. 25:2540-2553(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001676"
FT /product="gma-miR160a-5p"
FT /evidence=experimental
FT /experiment="454 [1]"
FT /similarity="MI0000190"
FT miRNA 82..102
FT /accession="MIMAT0022889"
FT /product="gma-miR160a-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 119 BP; 31 A; 25 C; 27 G; 0 T; 36 other;
caugcauaca uauguguaug ugccuggcuc ccuguaugcc auuuguagag cucaucgaag 60
caucaaugac cuuuguggau ggcguaugag gagccaagca uauuucauau acauacaug 119
//
ID gma-MIR166a standard; RNA; GMA; 146 BP.
XX
AC MI0001775;
XX
DE Glycine max miR166a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 18402695.
RA Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
RT "Novel and nodulation-regulated microRNAs in soybean roots";
RL BMC Genomics. 9:160(2008).
XX
RN [3]
RX PUBMED; 21663675.
RA Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA,
RA Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL,
RA Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF,
RA Pereira GA, Margis R;
RT "Identification of novel soybean microRNAs involved in abiotic and biotic
RT stresses";
RL BMC Genomics. 12:307(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0020920"
FT /product="gma-miR166a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 107..127
FT /accession="MIMAT0001677"
FT /product="gma-miR166a-3p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [3]"
FT /similarity="MI0000201"
XX
SQ Sequence 146 BP; 31 A; 32 C; 34 G; 0 T; 49 other;
acggaagcuu ugucuuuuga ggggaauguu gucuggcucg aggacccuuc uucaucuuga 60
ucuuguguag acuacuaugc uuguggucaa ggaauacaua guguugucgg accaggcuuc 120
auucccccca auuauaugcu uccaaa 146
//
ID gma-MIR166b standard; RNA; GMA; 167 BP.
XX
AC MI0001776;
XX
DE Glycine max miR166b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 18402695.
RA Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
RT "Novel and nodulation-regulated microRNAs in soybean roots";
RL BMC Genomics. 9:160(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 128..148
FT /accession="MIMAT0001678"
FT /product="gma-miR166b"
FT /evidence=experimental
FT /experiment="454 [1]"
FT /similarity="MI0000204"
XX
SQ Sequence 167 BP; 46 A; 33 C; 44 G; 0 T; 44 other;
gcuugcaaag gugagguuga gaggaauguu gucuggcucg aggucaugga ggaggaggag 60
gaguagagua cugagaucag ugaaaguuuc caauggaaau uuacccucuu acacaaaaaa 120
augauucucg gaccaggcuu cauucccccc acccaacuuu ugcuuuu 167
//
ID gma-MIR167a standard; RNA; GMA; 119 BP.
XX
AC MI0001777;
XX
DE Glycine max miR167a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 18402695.
RA Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
RT "Novel and nodulation-regulated microRNAs in soybean roots";
RL BMC Genomics. 9:160(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001679"
FT /product="gma-miR167a"
FT /evidence=experimental
FT /experiment="454 [1]"
FT /similarity="MI0000209"
XX
SQ Sequence 119 BP; 32 A; 28 C; 30 G; 0 T; 29 other;
gaaguucgca aaggaaaaag ugaagcugcc agcaugaucu accuuugguu agagagcuca 60
agagugcuaa cccugacuag gucaugcugu gacagccuca cuccuuccua uuuggggac 119
//
ID gma-MIR167b standard; RNA; GMA; 121 BP.
XX
AC MI0001778;
XX
DE Glycine max miR167b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 18402695.
RA Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
RT "Novel and nodulation-regulated microRNAs in soybean roots";
RL BMC Genomics. 9:160(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001680"
FT /product="gma-miR167b"
FT /evidence=experimental
FT /experiment="454 [1]"
FT /similarity="MI0000209"
XX
SQ Sequence 121 BP; 32 A; 27 C; 33 G; 0 T; 29 other;
aagggucaca aaggaaaaag ugaagcugcc agcaugaucu agcuuugguu agugggagcg 60
agagagugcu aacccucacu aggucaugcu gugcuagccu cacuccuucc uauuuggaga 120
c 121
//
ID gma-MIR168a standard; RNA; GMA; 125 BP.
XX
AC MI0001779;
XX
DE Glycine max miR168 stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 18402695.
RA Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
RT "Novel and nodulation-regulated microRNAs in soybean roots";
RL BMC Genomics. 9:160(2008).
XX
RN [3]
RX PUBMED; 20122185.
RA Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer
RA A, May G, Meyers BC, Xu D, Stacey G;
RT "Prediction of novel miRNAs and associated target genes in Glycine max";
RL BMC Bioinformatics. 11 Suppl 1:S14(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0001681"
FT /product="gma-miR168a"
FT /evidence=experimental
FT /experiment="454 [2], Northern [2], Illumina [3]"
FT /similarity="MI0000210"
XX
SQ Sequence 125 BP; 21 A; 34 C; 44 G; 0 T; 26 other;
cacugugcgg ucucuaauuc gcuuggugca ggucgggaac cgguuuucgc gcggaaugga 60
ggagcggucg ccggcgccga auuggauccc gccuugcauc aacugaaucg gaggccgcgg 120
ugaac 125
//
ID gma-MIR172a standard; RNA; GMA; 159 BP.
XX
AC MI0001780;
XX
DE Glycine max miR172a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 18402695.
RA Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
RT "Novel and nodulation-regulated microRNAs in soybean roots";
RL BMC Genomics. 9:160(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 120..140
FT /accession="MIMAT0001682"
FT /product="gma-miR172a"
FT /evidence=experimental
FT /experiment="454 [1], Northern [1]"
FT /similarity="MI0000216"
XX
SQ Sequence 159 BP; 42 A; 33 C; 41 G; 0 T; 43 other;
uuaacagucg uuauuugcgg auguagcauc aucaagauuc acaugcaagc gcagguggug 60
ggugggacuu gaugcaaucu aagugcugug ccagccaagc cauaggucuu uuggaacuga 120
gaaucuugau gaugcugcau cagccauaaa cgacuucac 159
//
ID gma-MIR172b standard; RNA; GMA; 153 BP.
XX
AC MI0001781;
XX
DE Glycine max miR172b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 18402695.
RA Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
RT "Novel and nodulation-regulated microRNAs in soybean roots";
RL BMC Genomics. 9:160(2008).
XX
RN [3]
RX PUBMED; 21663675.
RA Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA,
RA Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL,
RA Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF,
RA Pereira GA, Margis R;
RT "Identification of novel soybean microRNAs involved in abiotic and biotic
RT stresses";
RL BMC Genomics. 12:307(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..42
FT /accession="MIMAT0020921"
FT /product="gma-miR172b-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 114..134
FT /accession="MIMAT0001683"
FT /product="gma-miR172b-3p"
FT /evidence=experimental
FT /experiment="454 [1], Northern [1], Illumina [3]"
FT /similarity="MI0000216"
XX
SQ Sequence 153 BP; 40 A; 29 C; 38 G; 0 T; 46 other;
uugacagucg uuguuugcgg auguagcauc aucaagauuc acaugcaaau gaaggugggu 60
gggacuauga ugcaauccaa gugcucugcc aauccaucgg ucuuuuugau gugagaaucu 120
ugaugaugcu gcaucagcca uaaacggcuu uaa 153
//
ID gma-MIR319a standard; RNA; GMA; 207 BP.
XX
AC MI0001782;
XX
DE Glycine max miR319a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 18402695.
RA Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
RT "Novel and nodulation-regulated microRNAs in soybean roots";
RL BMC Genomics. 9:160(2008).
XX
RN [3]
RX PUBMED; 21504877.
RA Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS,
RA Singh MB, Carroll BJ, Bhalla PL;
RT "MicroRNAs in the shoot apical meristem of soybean";
RL J Exp Bot. 62:2495-2506(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 169..188
FT /accession="MIMAT0001684"
FT /product="gma-miR319a"
FT /evidence=experimental
FT /experiment="454 [1,3]"
FT /similarity="MI0000544"
XX
SQ Sequence 207 BP; 58 A; 41 C; 46 G; 0 T; 62 other;
cguugaagac ccuaagguaa gagagcuuuc uucaguccac ucauggguga caguaagauu 60
caauuagcug ccgacucauu cauccaaaug uugaguguaa gcgaauaaau auacucagca 120
gaugagugaa ugaugcggga gacaaauuga aucuuaaguu uccuguacuu ggacugaagg 180
gagcucccuu uuccuuuugu cucuuac 207
//
ID gma-MIR319b standard; RNA; GMA; 208 BP.
XX
AC MI0001783;
XX
DE Glycine max miR319b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 18402695.
RA Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
RT "Novel and nodulation-regulated microRNAs in soybean roots";
RL BMC Genomics. 9:160(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 170..189
FT /accession="MIMAT0001685"
FT /product="gma-miR319b"
FT /evidence=experimental
FT /experiment="454 [1]"
FT /similarity="MI0000544"
XX
SQ Sequence 208 BP; 61 A; 39 C; 46 G; 0 T; 62 other;
uaaguccuaa gcgacgguaa gagagcuuuc uucaguccac uuauggguga caauaagauu 60
ucaauuagcu gccgacucau ucauccaaau gcugagugaa agcgaagaaa gauacucagc 120
aaaugaguga augaugcggg agacaaauug auucuuaagu uuccuguacu uggacugaag 180
ggagcucccu uuuucuuuug aaucuucu 208
//
ID gma-MIR156a standard; RNA; GMA; 122 BP.
XX
AC MI0001784;
XX
DE Glycine max miR156a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 18402695.
RA Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
RT "Novel and nodulation-regulated microRNAs in soybean roots";
RL BMC Genomics. 9:160(2008).
XX
RN [3]
RX PUBMED; 21504877.
RA Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS,
RA Singh MB, Carroll BJ, Bhalla PL;
RT "MicroRNAs in the shoot apical meristem of soybean";
RL J Exp Bot. 62:2495-2506(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..40
FT /accession="MIMAT0001686"
FT /product="gma-miR156a"
FT /evidence=experimental
FT /experiment="454 [1,3]"
FT /similarity="MI0000655"
XX
SQ Sequence 122 BP; 29 A; 26 C; 31 G; 0 T; 36 other;
cacaccagau ugagagaggc ugacagaaga gagugagcac augcuagugg uauuuguaug 60
agggcauaca auugcgggug cgugcucacu ucucuaucug ucagcuuccc auucuuuuuu 120
ac 122
//
ID gma-MIR396a standard; RNA; GMA; 140 BP.
XX
AC MI0001785;
XX
DE Glycine max miR396a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 18402695.
RA Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
RT "Novel and nodulation-regulated microRNAs in soybean roots";
RL BMC Genomics. 9:160(2008).
XX
RN [3]
RX PUBMED; 21663675.
RA Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA,
RA Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL,
RA Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF,
RA Pereira GA, Margis R;
RT "Identification of novel soybean microRNAs involved in abiotic and biotic
RT stresses";
RL BMC Genomics. 12:307(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001687"
FT /product="gma-miR396a-5p"
FT /evidence=experimental
FT /experiment="454 [1], Northern [1], Illumina [3]"
FT /similarity="MI0001013"
FT miRNA 104..123
FT /accession="MIMAT0020922"
FT /product="gma-miR396a-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 140 BP; 33 A; 34 C; 27 G; 0 T; 46 other;
ucauggcucu cuuuguauuc uuccacagcu uucuugaacu gcauccaaag aguuccuuug 60
caugcaugcc auggcacucu uacucccaaa ucuuguuuug cgguucaaua aagcuguggg 120
aagauacaga uagggucaac 140
//
ID gma-MIR396b standard; RNA; GMA; 126 BP.
XX
AC MI0001786;
XX
DE Glycine max miR396b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 18402695.
RA Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
RT "Novel and nodulation-regulated microRNAs in soybean roots";
RL BMC Genomics. 9:160(2008).
XX
RN [3]
RX PUBMED; 21663675.
RA Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA,
RA Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL,
RA Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF,
RA Pereira GA, Margis R;
RT "Identification of novel soybean microRNAs involved in abiotic and biotic
RT stresses";
RL BMC Genomics. 12:307(2011).
XX
RN [4]
RX PUBMED; 22156213.
RA Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z,
RA Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ,
RA Meyers BC;
RT "MicroRNAs as master regulators of the plant NB-LRR defense gene family
RT via the production of phased, trans-acting siRNAs";
RL Genes Dev. 25:2540-2553(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001688"
FT /product="gma-miR396b-5p"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [3]"
FT /similarity="MI0001014"
FT miRNA 89..109
FT /accession="MIMAT0020923"
FT /product="gma-miR396b-3p"
FT /evidence=experimental
FT /experiment="Illumina [3-4]"
XX
SQ Sequence 126 BP; 31 A; 32 C; 23 G; 0 T; 40 other;
cucaaguccu ggucaugcuu uuccacagcu uucuugaacu ucuuaugcau cuuauaucuc 60
uccaccucca ggauuuuaag cccuagaagc ucaagaaagc ugugggagaa uauggcaauu 120
caggcu 126
//
ID gma-MIR398a standard; RNA; GMA; 116 BP.
XX
AC MI0001787;
XX
DE Glycine max miR398a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 77..97
FT /accession="MIMAT0001689"
FT /product="gma-miR398a"
FT /evidence=not_experimental
FT /similarity="MI0001017"
XX
SQ Sequence 116 BP; 28 A; 24 C; 27 G; 0 T; 37 other;
cucggaggag ugaaucugag aacacaaggc ugguuugcac ugcuauauca ucuauuggua 60
uaaggugaau uuacuuugug uucucagguc accccuuuga gccaaccugu ugacau 116
//
ID gma-MIR398b standard; RNA; GMA; 135 BP.
XX
AC MI0001788;
XX
DE Glycine max miR398b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 25747880.
RA Zhao M, Meyers BC, Cai C, Xu W, Ma J;
RT "Evolutionary patterns and coevolutionary consequences of MIRNA genes and
RT microRNA targets triggered by multiple mechanisms of genomic duplications
RT in soybean";
RL Plant Cell. 27:546-562(2015).
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0037314"
FT /product="gma-miR398b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 96..116
FT /accession="MIMAT0001690"
FT /product="gma-miR398b-3p"
FT /evidence=not_experimental
FT /similarity="MI0001017"
XX
SQ Sequence 135 BP; 34 A; 25 C; 32 G; 0 T; 44 other;
aguccaaaug guuuaucuca gaggagugga ucugagaaca caaggcuggu uugcacugcu 60
auauuaugau cgauugguau aaggugaauu uacuuugugu ucucagguca ccccuuugag 120
ccaaccuguu gacau 135
//
ID gma-MIR319c standard; RNA; GMA; 221 BP.
XX
AC MI0001789;
XX
DE Glycine max miR319c stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 18402695.
RA Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
RT "Novel and nodulation-regulated microRNAs in soybean roots";
RL BMC Genomics. 9:160(2008).
XX
RN [3]
RX PUBMED; 21663675.
RA Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA,
RA Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL,
RA Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF,
RA Pereira GA, Margis R;
RT "Identification of novel soybean microRNAs involved in abiotic and biotic
RT stresses";
RL BMC Genomics. 12:307(2011).
XX
RN [4]
RX PUBMED; 25747880.
RA Zhao M, Meyers BC, Cai C, Xu W, Ma J;
RT "Evolutionary patterns and coevolutionary consequences of MIRNA genes and
RT microRNA targets triggered by multiple mechanisms of genomic duplications
RT in soybean";
RL Plant Cell. 27:546-562(2015).
XX
FH Key Location/Qualifiers
FH
FT miRNA 183..202
FT /accession="MIMAT0001691"
FT /product="gma-miR319c"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [3-4]"
FT /similarity="MI0001086"
XX
SQ Sequence 221 BP; 59 A; 42 C; 52 G; 0 T; 68 other;
uugggaggga aagagaguga aggagcuucc cucagcccau ucauggagau aacgaaagau 60
uggguugcug aauuaacugc uagcucacac auucauucau acaauaguau ucaauuaggg 120
uaauauugug ugaaugaagc gggaguauau aguaucuaua uuggaacccu cuuucucugu 180
gcuuggacug aagggagcuc cuucuuuuuc ugcucccucc a 221
//
ID gma-MIR156b standard; RNA; GMA; 120 BP.
XX
AC MI0001790;
XX
DE Glycine max miR156b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 21504877.
RA Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS,
RA Singh MB, Carroll BJ, Bhalla PL;
RT "MicroRNAs in the shoot apical meristem of soybean";
RL J Exp Bot. 62:2495-2506(2011).
XX
RN [3]
RX PUBMED; 22156213.
RA Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z,
RA Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ,
RA Meyers BC;
RT "MicroRNAs as master regulators of the plant NB-LRR defense gene family
RT via the production of phased, trans-acting siRNAs";
RL Genes Dev. 25:2540-2553(2011).
XX
RN [4]
RX PUBMED; 24475082.
RA Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ;
RT "Systems and evolutionary characterization of microRNAs and their
RT underlying regulatory networks in soybean cotyledons";
RL PLoS One. 9:e86153(2014).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001692"
FT /product="gma-miR156b"
FT /evidence=experimental
FT /experiment="454 [2], Illumina [3-4]"
FT /similarity="MI0001090"
XX
SQ Sequence 120 BP; 29 A; 27 C; 30 G; 0 T; 34 other;
ugaugugaga uaucucaugu ugacagaaga gagagagcac aacccgggaa uggcuaaagg 60
agucuuugcc uuuguuggga gugugcccuc ucuuccucug ucaucaucac auucacaugc 120
//
ID gma-MIR169a standard; RNA; GMA; 121 BP.
XX
AC MI0001791;
XX
DE Glycine max miR169a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 18402695.
RA Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
RT "Novel and nodulation-regulated microRNAs in soybean roots";
RL BMC Genomics. 9:160(2008).
XX
RN [3]
RX PUBMED; 21504877.
RA Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS,
RA Singh MB, Carroll BJ, Bhalla PL;
RT "MicroRNAs in the shoot apical meristem of soybean";
RL J Exp Bot. 62:2495-2506(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001693"
FT /product="gma-miR169a"
FT /evidence=experimental
FT /experiment="454 [1,3], Northern [1]"
FT /similarity="MI0001118"
XX
SQ Sequence 121 BP; 22 A; 25 C; 32 G; 0 T; 42 other;
aagaggaaga gagagugaug cagccaagga ugacuugccg gcguuauuau uugcucaugu 60
ucaugcucac cgguuuccuu gccggcaagu uguguuuggc uauguuuugc ucucuucuuc 120
u 121
//
ID zma-MIR171d standard; RNA; ZMA; 121 BP.
XX
AC MI0001792;
XX
DE Zea mays miR171d stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0015160"
FT /product="zma-miR171d-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 82..102
FT /accession="MIMAT0001694"
FT /product="zma-miR171d-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000214"
XX
SQ Sequence 121 BP; 29 A; 26 C; 32 G; 0 T; 34 other;
agaaauggaa guguaacuau gguguuggcu cggcucacuc agaaguugaa gccgaaucca 60
aaugguagcu gccggcguuu cugauugagc cgugccaaua ucucaguacu cuuucaugcu 120
g 121
//
ID zma-MIR171f standard; RNA; ZMA; 155 BP.
XX
AC MI0001793;
XX
DE Zea mays miR171f stem-loop
XX
RN [1]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0015161"
FT /product="zma-miR171f-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 118..138
FT /accession="MIMAT0001695"
FT /product="zma-miR171f-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT /similarity="MI0000990"
XX
SQ Sequence 155 BP; 30 A; 35 C; 45 G; 0 T; 45 other;
uugguuguug gcugagagag ugcgauguug gcauggcuca aucaacucgc cggccgcggg 60
uggcuuauag cuuaauucug cgcauucgau cgaggugcgg gcgcaguguu uaauugauug 120
agccgugcca auaucacaac cuucucuagc cuaua 155
//
ID zma-MIR394a standard; RNA; ZMA; 126 BP.
XX
AC MI0001794;
XX
DE Zea mays miR394a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..40
FT /accession="MIMAT0001696"
FT /product="zma-miR394a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001027"
FT miRNA 90..109
FT /accession="MIMAT0015162"
FT /product="zma-miR394a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 126 BP; 21 A; 32 C; 32 G; 0 T; 41 other;
ggcgcuuacu gaagaguucc uuggcauucu guccaccucc ucucgccgau cuugcagaaa 60
guuuaccagu ucuguugcau uuuuuuugga ggugggcaua cugccaaugg agcuguguag 120
gccucc 126
//
ID zma-MIR394b standard; RNA; ZMA; 122 BP.
XX
AC MI0001795;
XX
DE Zea mays miR394b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..40
FT /accession="MIMAT0001697"
FT /product="zma-miR394b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001027"
FT miRNA 86..105
FT /accession="MIMAT0015163"
FT /product="zma-miR394b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 122 BP; 18 A; 29 C; 32 G; 0 T; 43 other;
uggcgcuuac ugagaguucc uuggcauucu guccaccucc cuucuugacg aucuugcaga 60
aaguuugcuu uuuuuguuug uuuggaggug ggcauacugc caauggagcu gcguaggccu 120
cc 122
//
ID zma-MIR395b standard; RNA; ZMA; 114 BP.
XX
AC MI0001796;
XX
DE Zea mays miR395b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0015164"
FT /product="zma-miR395b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 75..95
FT /accession="MIMAT0001698"
FT /product="zma-miR395b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001033"
XX
SQ Sequence 114 BP; 31 A; 21 C; 26 G; 0 T; 36 other;
gcaacguuuu guguuacuag gaguucccua caagcacuuc acaauaccuu ggcucaauaa 60
auuaaaggcc aguugugaag uguuuggggg aacucuuggu aucaugaagc auuu 114
//
ID zma-MIR395c standard; RNA; ZMA; 138 BP.
XX
AC MI0001798;
XX
DE Zea mays miR395c stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0015165"
FT /product="zma-miR395c-5p"
FT /evidence=not_experimental
FT /similarity="MI0001035"
FT miRNA 99..119
FT /accession="MIMAT0001700"
FT /product="zma-miR395c-3p"
FT /evidence=not_experimental
FT /similarity="MI0001035"
XX
SQ Sequence 138 BP; 28 A; 34 C; 34 G; 0 T; 42 other;
ucuugguugg uucucccuug gaguucccug caaacacuuc accagcuagg ccauagugcc 60
ggcccuugca caauguugua ucugaucacc uagcuagugu gaaguguuug gaggaacucu 120
agguguuauc cagcaaug 138
//
ID zma-MIR395a standard; RNA; ZMA; 149 BP.
XX
AC MI0001799;
XX
DE Zea mays miR395a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0015166"
FT /product="zma-miR395a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 110..130
FT /accession="MIMAT0001701"
FT /product="zma-miR395a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001036"
XX
SQ Sequence 149 BP; 28 A; 31 C; 44 G; 0 T; 46 other;
uauugguugg uugucaccug gaguucuccu caaaccacuu caguugcugc accuagcuag 60
uuuaauggca cugugcuugc gugcaagcgg ccggagcugu guguagcuag ugaaguguuu 120
gggggaacuc ugggugucaa ucagcaauu 149
//
ID zma-MIR396b standard; RNA; ZMA; 136 BP.
XX
AC MI0001800;
XX
DE Zea mays miR396b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001702"
FT /product="zma-miR396b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001046"
FT miRNA 99..119
FT /accession="MIMAT0015167"
FT /product="zma-miR396b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 136 BP; 33 A; 37 C; 34 G; 0 T; 32 other;
agauggccuu cuuugugauc uuccacagcu uucuugaacu gcaucucuca gaggagcggc 60
agcuucaacu ccuccacccg caucagcagg ugcaugcagu ucaauaaagc ugugggaaac 120
ugcagagaga ggccag 136
//
ID zma-MIR396a standard; RNA; ZMA; 137 BP.
XX
AC MI0001801;
XX
DE Zea mays miR396a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001703"
FT /product="zma-miR396a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001046"
FT miRNA 100..120
FT /accession="MIMAT0015168"
FT /product="zma-miR396a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 137 BP; 28 A; 40 C; 39 G; 0 T; 30 other;
acauggcccu ccuugccguc uuccacagcu uucuugaacu gcaugccgcc ggcuggugga 60
ugcugcgcgc uugaauuccg gucgauccca agaggcgcag uucaauaaag cugugggaaa 120
cugcagagag aggccac 137
//
ID zma-MIR399a standard; RNA; ZMA; 123 BP.
XX
AC MI0001802;
XX
DE Zea mays miR399a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0015169"
FT /product="zma-miR399a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 84..104
FT /accession="MIMAT0001704"
FT /product="zma-miR399a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001054"
XX
SQ Sequence 123 BP; 30 A; 36 C; 30 G; 0 T; 27 other;
ugugaagagg gugagaauca cagugcgguu cuccucuggc acgaaggcug gccagagcag 60
cuuauauugc caccacccuu ccuugccaaa ggagaauugc ccugccauuc acaacccugc 120
aau 123
//
ID zma-MIR399c standard; RNA; ZMA; 207 BP.
XX
AC MI0001803;
XX
DE Zea mays miR399c stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0015170"
FT /product="zma-miR399c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 168..188
FT /accession="MIMAT0001705"
FT /product="zma-miR399c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001055"
XX
SQ Sequence 207 BP; 49 A; 52 C; 64 G; 0 T; 42 other;
ugcuugcuga gcaugaauua caggguacgu cuccuuuggc acagcagaau gcacacauca 60
ucagucgaga gaguaagcuc gcugcgugcu cgccggccug ggagcggaag ucgcaggcca 120
aauggcggcg gugcagaugc augaacagca gcugccguau auaugcgugc caaaggagaa 180
uugcccugcg auucuaggcu cagcgau 207
//
ID zma-MIR399b standard; RNA; ZMA; 122 BP.
XX
AC MI0001804;
XX
DE Zea mays miR399b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0015171"
FT /product="zma-miR399b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 83..103
FT /accession="MIMAT0001706"
FT /product="zma-miR399b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001061"
XX
SQ Sequence 122 BP; 27 A; 33 C; 34 G; 0 T; 28 other;
guagcucagg gugcgaauca cagugcagcu cuccucuggc augaaggcug ugagagaggc 60
augacaauuu cuggccuugc ccugccaaag gagagcuguc cugccauuca uuagcccugc 120
aa 122
//
ID zma-MIR399d standard; RNA; ZMA; 125 BP.
XX
AC MI0001805;
XX
DE Zea mays miR399d stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..38
FT /accession="MIMAT0015172"
FT /product="zma-miR399d-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 86..106
FT /accession="MIMAT0001707"
FT /product="zma-miR399d-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001061"
XX
SQ Sequence 125 BP; 27 A; 37 C; 35 G; 0 T; 26 other;
ucaaggugag aaucacagug uggcucuccu cuggcaugaa ggcgcggcug agaggcacga 60
acaguuucug gccuuccccu gccaaugcca aaggagagcu gcccugccau ucguuagccc 120
ugcaa 125
//
ID zma-MIR399e standard; RNA; ZMA; 124 BP.
XX
AC MI0001806;
XX
DE Zea mays miR399e stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0015173"
FT /product="zma-miR399e-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 85..105
FT /accession="MIMAT0001708"
FT /product="zma-miR399e-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001062"
XX
SQ Sequence 124 BP; 26 A; 34 C; 29 G; 0 T; 35 other;
augccuaagc uguccaguuu cagggcuucu cuuucuuggc agggaagcau gagaugccau 60
agcucucugc ucucuucaac ccucugccaa aggagaguug cccuguaaca ggacucagcu 120
uaug 124
//
ID zma-MIR399f standard; RNA; ZMA; 105 BP.
XX
AC MI0001807;
XX
DE Zea mays miR399f stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0015174"
FT /product="zma-miR399f-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 66..86
FT /accession="MIMAT0001709"
FT /product="zma-miR399f-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001063"
XX
SQ Sequence 105 BP; 25 A; 29 C; 26 G; 0 T; 25 other;
caggaugugc accugcauuu cugggcaacu ucuccuuugg cagaugcgcg agaaugugcc 60
acugcugcca aaggaaauuu gccccggaau ucaucugcac aagca 105
//
ID zma-MIR156j standard; RNA; ZMA; 125 BP.
XX
AC MI0001808;
XX
DE Zea mays miR156j stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001710"
FT /product="zma-miR156j-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001090"
FT miRNA 86..108
FT /accession="MIMAT0015175"
FT /product="zma-miR156j-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 125 BP; 31 A; 40 C; 37 G; 0 T; 17 other;
cgaguggacc ucgggagcga ugacagaaga gagagagcac aacccagcac cagcgaggaa 60
aagccucgcu ucugcgaggg ccgugugcuc ucugcucuca cugucaucgc ccacaggcca 120
ccgaa 125
//
ID zma-MIR159a standard; RNA; ZMA; 246 BP.
XX
AC MI0001809;
XX
DE Zea mays miR159a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0015176"
FT /product="zma-miR159a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 207..227
FT /accession="MIMAT0001711"
FT /product="zma-miR159a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001093"
XX
SQ Sequence 246 BP; 40 A; 65 C; 66 G; 0 T; 75 other;
ucgaugcuuu ggguuugaag cggagcuccu aucauuccaa ugaagggucg uuccgaaggg 60
cugguuccgc ugcucguuca ugguucccac uauccuaucu caucaugugu auauauguaa 120
uccauggggg aggguuucuc ucgucuuuga gauaggcuug ugguuugcau gaccgaggag 180
cugcaccgcc cccuugcugg ccgcucuuug gauugaaggg agcucugcau ccugauccac 240
cccucc 246
//
ID zma-MIR159b standard; RNA; ZMA; 221 BP.
XX
AC MI0001810;
XX
DE Zea mays miR159b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0015177"
FT /product="zma-miR159b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 182..202
FT /accession="MIMAT0001712"
FT /product="zma-miR159b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001093"
XX
SQ Sequence 221 BP; 44 A; 53 C; 64 G; 0 T; 60 other;
uagacggucu ggucuuaagg cggugcuccc uucaaaccaa uaaacggucg aucugauggg 60
ugguacagcu gcucguucau gguucccacu gucccaucuc aucagagaga gagagagaug 120
cuugagaugg gcuugugguu ugcaugaccg aggagcugca cguccccuuc guugaccgcu 180
guuuggauug aagggagcuc ugcaucuugg ucccaagacu u 221
//
ID zma-MIR159c standard; RNA; ZMA; 217 BP.
XX
AC MI0001811;
XX
DE Zea mays miR159c stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0015178"
FT /product="zma-miR159c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 178..198
FT /accession="MIMAT0001713"
FT /product="zma-miR159c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001097"
XX
SQ Sequence 217 BP; 39 A; 59 C; 63 G; 0 T; 56 other;
augauuaaga aaggcgaucg aagagcuccc uucgauccaa uccaggaggg gaaguggucg 60
guugcagcug ccgguucaug gauaccucuc uggugcagca auggccgcug cucaccucug 120
cacuugcaug ggugugcaug acccgggaga ugagcccgcc aucaucuuuc ccucgugcuu 180
ggauugaagg gagcuccucu cugucugucu gucuguc 217
//
ID zma-MIR159d standard; RNA; ZMA; 217 BP.
XX
AC MI0001812;
XX
DE Zea mays miR159d stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0015179"
FT /product="zma-miR159d-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 178..198
FT /accession="MIMAT0001714"
FT /product="zma-miR159d-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001097"
XX
SQ Sequence 217 BP; 44 A; 62 C; 58 G; 0 T; 53 other;
aagaagaugc cgaucgaucg aagagcuccc uucgauccaa uccaggaggg aaaguggucg 60
gcugcagcug ccgguucaug gauaccucuc uggugcagca auggccgaga ugcucaccug 120
cacuugcaug ggugugcaug acccgggaga cgaaccgacc aucaucuuuc ccucgugcuu 180
ggauugaagg gagcuccucu cucucucucu cucuuau 217
//
ID zma-MIR319a standard; RNA; ZMA; 209 BP.
XX
AC MI0001813;
XX
DE Zea mays miR319a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..42
FT /accession="MIMAT0015180"
FT /product="zma-miR319a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 171..190
FT /accession="MIMAT0001715"
FT /product="zma-miR319a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001098"
XX
SQ Sequence 209 BP; 40 A; 49 C; 58 G; 0 T; 62 other;
gguucauguu uucucuggaa gagagcucuc uucaguccac ucugaaaugg cuguaggguu 60
ucauuagcug ccgacucauc cauucaccug ccaagaacca uggacagguc uggucuuggu 120
agccgagugg guggcgcggg agcuaaaauc aagcucuacg cuguuugugg uuggacugaa 180
gggugcuccc uuuuguuugc ucaaacgcu 209
//
ID zma-MIR319c standard; RNA; ZMA; 216 BP.
XX
AC MI0001814;
XX
DE Zea mays miR319c stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..42
FT /accession="MIMAT0015181"
FT /product="zma-miR319c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 178..197
FT /accession="MIMAT0001716"
FT /product="zma-miR319c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001098"
XX
SQ Sequence 216 BP; 47 A; 52 C; 59 G; 0 T; 58 other;
gguuuauggc uucuguggaa gagagcucuc uucaguccac ucuaaaaugg cuguaggguu 60
ucauuagcug ccgacucauc cauucaccug ccaagaacca ugggcaagcg guaggucugg 120
ucuugguagc cgagugggug gcgcgggagc uaaaaucaaa cucuacgcug uuuacgguug 180
gacugaaggg ugcucccuuc aauuugccca aacacu 216
//
ID zma-MIR319b standard; RNA; ZMA; 213 BP.
XX
AC MI0001815;
XX
DE Zea mays miR319b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0015182"
FT /product="zma-miR319b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 175..194
FT /accession="MIMAT0001717"
FT /product="zma-miR319b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001099"
XX
SQ Sequence 213 BP; 47 A; 58 C; 61 G; 0 T; 47 other;
gacgacgaug gcuggaugga agagagcguc cuucagucca cucaggggcg gugcuagggu 60
cgaauuagcu gccgacucau ucacccacau gccaagcaaa cggccaugga aaccagcuuu 120
gcagaugagu gaaugaagcg ggagguaaaa gcuucgaucu cgcaccgucu uugcuuggac 180
ugaagggugc ucccuccucc cucgcuccuu guu 213
//
ID zma-MIR319d standard; RNA; ZMA; 212 BP.
XX
AC MI0001816;
XX
DE Zea mays miR319d stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..42
FT /accession="MIMAT0015183"
FT /product="zma-miR319d-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 174..193
FT /accession="MIMAT0001718"
FT /product="zma-miR319d-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001099"
XX
SQ Sequence 212 BP; 44 A; 57 C; 63 G; 0 T; 48 other;
uggucgccgg ccggauggaa gagagcgucc uucaguccac ucaggggcgg ugcuaggguc 60
ggauuagcug ccgacucauu cacccacaug ccaagcaaac ggccauggaa acgagcuucg 120
cagaugagug aaugaagcgg gagguaaaag cuucgaucuc gcaccgucuu ugcuuggacu 180
gaagggugcu cccuccgauc cuuuccuugu uu 212
//
ID zma-MIR166k standard; RNA; ZMA; 168 BP.
XX
AC MI0001817;
XX
DE Zea mays miR166k stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0015184"
FT /product="zma-miR166k-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 129..149
FT /accession="MIMAT0001719"
FT /product="zma-miR166k-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001107"
XX
SQ Sequence 168 BP; 28 A; 41 C; 53 G; 0 T; 46 other;
gcaugcucgg guuaggucag ggggauuguu gucuggcucg gggucuccgg ucgagaucga 60
uucauaacau auacguacgu gcuucuagcc uugccggcgg agcuagucgu ugucgucgac 120
cggagauuuc ggaccaggcu ucaaucccuu ugaccaugcg gcauuagg 168
//
ID zma-MIR166j standard; RNA; ZMA; 154 BP.
XX
AC MI0001818;
XX
DE Zea mays miR166j stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0015185"
FT /product="zma-miR166j-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 115..135
FT /accession="MIMAT0001720"
FT /product="zma-miR166j-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001108"
XX
SQ Sequence 154 BP; 36 A; 34 C; 40 G; 0 T; 44 other;
caaguugaag auuagguuaa gggguuuguu ugucugguuc aaggucgcca cacagcaggg 60
aaaacccauu ucgccuugaa gcaugcacca ugaugggugu accuguuggu gaucucggac 120
caggcuucaa ucccuuuaac uagcgucugc auau 154
//
ID zma-MIR167e standard; RNA; ZMA; 119 BP.
XX
AC MI0001819;
XX
DE Zea mays miR167e stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001721"
FT /product="zma-miR167e-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001109"
FT miRNA 81..102
FT /accession="MIMAT0015186"
FT /product="zma-miR167e-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 119 BP; 27 A; 28 C; 32 G; 0 T; 32 other;
uugguguguc cucuaguagc ugaagcugcc agcaugaucu gaggugucca cagcauauau 60
auggaagcag cuagcgauca gaucaugcug ugcaguuuca ucugcucgug gacgcacac 119
//
ID zma-MIR167f standard; RNA; ZMA; 119 BP.
XX
AC MI0001820;
XX
DE Zea mays miR167f stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001722"
FT /product="zma-miR167f-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001112"
FT miRNA 81..102
FT /accession="MIMAT0015187"
FT /product="zma-miR167f-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 119 BP; 28 A; 30 C; 27 G; 0 T; 34 other;
cgugcaccuu auuaagcagc ugaagcugcc agcaugaucu gaucuuucgu uuacuggcaa 60
cuuuggauac cuaagaucca gaucgugcug cgcaguuuca ccugcuaauu ggagcacag 119
//
ID zma-MIR167g standard; RNA; ZMA; 243 BP.
XX
AC MI0001821;
XX
DE Zea mays miR167g stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001723"
FT /product="zma-miR167g-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001113"
FT miRNA 207..226
FT /accession="MIMAT0015188"
FT /product="zma-miR167g-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 243 BP; 59 A; 53 C; 70 G; 0 T; 61 other;
aguggugcac cacgaguugg ugaagcugcc agcaugaucu gguuaugaug guggugguau 60
auguaagaug gauguaaucu auacuacuac cggccccugu cacucucucu cucucccccg 120
ucccugacug ucauauaugg aucgacgaau ccaagaugag aggggaaggg agagagagag 180
aggguaauua augagcacca ggaccagguc augcuguagu uucaucugcu gguggccgca 240
cau 243
//
ID zma-MIR167h standard; RNA; ZMA; 143 BP.
XX
AC MI0001822;
XX
DE Zea mays miR167h stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001724"
FT /product="zma-miR167h-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001114"
FT miRNA 107..125
FT /accession="MIMAT0015189"
FT /product="zma-miR167h-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 143 BP; 25 A; 41 C; 42 G; 0 T; 35 other;
acuuugcugc ugugagaggu ugaagcugcc agcaugaucu ggcugcucag acgccggcgg 60
gcgucucgag ugcucgcucg aucgucggug acgcuuggau ucaccagauc auguugcagc 120
uucacucucu cgcagccagc aaa 143
//
ID zma-MIR167i standard; RNA; ZMA; 130 BP.
XX
AC MI0001823;
XX
DE Zea mays miR167i stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001725"
FT /product="zma-miR167i-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001114"
FT miRNA 94..112
FT /accession="MIMAT0015190"
FT /product="zma-miR167i-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 130 BP; 25 A; 42 C; 33 G; 0 T; 30 other;
acuucgcugg ugugagagcu ugaagcugcc agcaugaucu ggcurcucaa acgccgccgg 60
ccucccaagu gcucgaucgg uggcgcuuca ccagaucaug uugcagcuuc acucucucgc 120
aaccagcgaa 130
//
ID zma-MIR168a standard; RNA; ZMA; 104 BP.
XX
AC MI0001824;
XX
DE Zea mays miR168a stem-loop
XX
RN [1]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001726"
FT /product="zma-miR168a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT /similarity="MI0001115"
FT miRNA 67..86
FT /accession="MIMAT0015191"
FT /product="zma-miR168a-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 104 BP; 16 A; 38 C; 39 G; 0 T; 11 other;
gaagccgcgc cgccucgggc ucgcuuggug cagaucggga cccgccgccc ggccgacggg 60
acggaucccg ccuugcacca agugaaucgg agccggcgga gcga 104
//
ID zma-MIR168b standard; RNA; ZMA; 104 BP.
XX
AC MI0001825;
XX
DE Zea mays miR168b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001727"
FT /product="zma-miR168b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001115"
FT miRNA 67..86
FT /accession="MIMAT0015192"
FT /product="zma-miR168b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 104 BP; 14 A; 39 C; 37 G; 0 T; 14 other;
uccgccgcgc cgucucgggc ucgcuuggug cagaucggga cccgccgccc ggccgacggg 60
acggaucccg ccuugcauca agugaaucgg agccggcgca gcga 104
//
ID zma-MIR169c standard; RNA; ZMA; 134 BP.
XX
AC MI0001826;
XX
DE Zea mays miR169c stem-loop
XX
RN [1]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001728"
FT /product="zma-miR169c-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT /similarity="MI0001118"
FT miRNA 96..117
FT /accession="MIMAT0015193"
FT /product="zma-miR169c-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 134 BP; 25 A; 34 C; 39 G; 0 T; 36 other;
augagguaga gaacgggaug cagccaagga ugacuugccg gcuccuggaa ccuggaggcg 60
ucucagcuug cugugcugug gcuuagaacu uagucggcaa gucuguccuu ggcuacaccu 120
aguucucuuc cucu 134
//
ID zma-MIR169f standard; RNA; ZMA; 150 BP.
XX
AC MI0001827;
XX
DE Zea mays miR169f stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001729"
FT /product="zma-miR169f-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001121"
FT miRNA 113..133
FT /accession="MIMAT0015194"
FT /product="zma-miR169f-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 150 BP; 32 A; 34 C; 42 G; 0 T; 42 other;
accagagcug auucguucag uagccaagga ugacuugccu agguauauau gcaugggcua 60
uggcuacaug ccugagagcc agucucuugu gacgcugagc auguauagug uaggcauguc 120
uuccuuggcu acucggagcg gcucuaguca 150
//
ID zma-MIR169g standard; RNA; ZMA; 140 BP.
XX
AC MI0001828;
XX
DE Zea mays miR169g stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001730"
FT /product="zma-miR169g"
FT /evidence=not_experimental
FT /similarity="MI0001122"
XX
SQ Sequence 140 BP; 18 A; 39 C; 42 G; 0 T; 41 other;
cagagcuagc cugccucugg uagccaagga ugacuugccu acauggucuc gcuaguuccg 60
guuguugcau gcaugccacu augccagucc ugcuggguuu gugggcgguc uccuuggcua 120
gccugagugg cucuugccug 140
//
ID zma-MIR169h standard; RNA; ZMA; 128 BP.
XX
AC MI0001829;
XX
DE Zea mays miR169h stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001731"
FT /product="zma-miR169h"
FT /evidence=not_experimental
FT /similarity="MI0001122"
XX
SQ Sequence 128 BP; 25 A; 29 C; 34 G; 0 T; 40 other;
caauaagggc cugccucuga uagccaagga ugacuugccu auguccuuug uuuacaaagg 60
aucagaauug uggaccuuug uguugguucg uaggcagucu ccuuggcuag ccugaguggc 120
cccuauug 128
//
ID zma-MIR169i standard; RNA; ZMA; 191 BP.
XX
AC MI0001830;
XX
DE Zea mays miR169i stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001732"
FT /product="zma-miR169i-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001124"
FT miRNA 155..172
FT /accession="MIMAT0015195"
FT /product="zma-miR169i-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 191 BP; 36 A; 52 C; 60 G; 0 T; 43 other;
gaugagagug guagcucugg uagccaagga ugacuugccu gugugcuggc cacgcucccc 60
ucaugcaagg accaucucgu gucgaccgac gagcgagcga gcgaucgauc gaugagagga 120
ugacgaagcu ugggguguac guuggucucu cacgggcagu cuccuuggcu agcccugacu 180
cacucuuacc g 191
//
ID zma-MIR169k standard; RNA; ZMA; 133 BP.
XX
AC MI0001831;
XX
DE Zea mays miR169k stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001733"
FT /product="zma-miR169k-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001124"
FT miRNA 97..114
FT /accession="MIMAT0015196"
FT /product="zma-miR169k-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 133 BP; 21 A; 39 C; 39 G; 0 T; 34 other;
cgaugagagc acugcucugg uagccaagga ugacuugccu guggccucca ucagucgcag 60
aggacgcugu ucuucugcuu gugguugucg aucgcaggca gucuccuugg cuagcccgag 120
cggcucucau cca 133
//
ID zma-MIR169j standard; RNA; ZMA; 151 BP.
XX
AC MI0001832;
XX
DE Zea mays miR169j stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001734"
FT /product="zma-miR169j-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001126"
FT miRNA 116..133
FT /accession="MIMAT0015197"
FT /product="zma-miR169j-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 151 BP; 23 A; 42 C; 44 G; 0 T; 42 other;
gcgauaagag ucuguccaga uagccaagga ugacuugccu guggcuucuu ggcuuggcuu 60
ggcucgggca aaaccuugug cacguuuuau ugcucgccuc guggccucga ucacaggcag 120
ucuccuuggc uaguccgggc gggccccuua u 151
//
ID zma-MIR169d standard; RNA; ZMA; 128 BP.
XX
AC MI0001833;
XX
DE Zea mays miR169d stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001735"
FT /product="zma-miR169d"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001132"
XX
SQ Sequence 128 BP; 36 A; 33 C; 30 G; 0 T; 29 other;
gcaauagggg ccacucaggc uagccaagga gacugccuau gaaccucuca augguccaca 60
cauucagguc cuuuguaaac aaaggacaua ggcaagucau ccuuggcuau cagagguagg 120
cccuuauu 128
//
ID zma-MIR169e standard; RNA; ZMA; 128 BP.
XX
AC MI0001834;
XX
DE Zea mays miR169e stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001736"
FT /product="zma-miR169e"
FT /evidence=not_experimental
FT /similarity="MI0001132"
XX
SQ Sequence 128 BP; 40 A; 34 C; 29 G; 0 T; 25 other;
gcaauagggg ccacucaggc uagccaagga gacugccuac gaaccaacac aaagguccac 60
aauucugauc cuuuguaaac aaaggacaua ggcaagucau ccuuggcuau cagaggcagg 120
cccuuauu 128
//
ID zma-MIR171c standard; RNA; ZMA; 118 BP.
XX
AC MI0001835;
XX
DE Zea mays miR171c stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0015198"
FT /product="zma-miR171c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 79..99
FT /accession="MIMAT0001737"
FT /product="zma-miR171c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001134"
XX
SQ Sequence 118 BP; 26 A; 33 C; 31 G; 0 T; 28 other;
ggggaaucga aaaccuacgg gauauuggug cgguucaauc agaaagcuug cgcuccaaag 60
cccaggggcu ccacucuuug acugagccgu gccaauauca cguccucgcu uugcuugc 118
//
ID zma-MIR171j standard; RNA; ZMA; 129 BP.
XX
AC MI0001836;
XX
DE Zea mays miR171j stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0015199"
FT /product="zma-miR171j-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 90..110
FT /accession="MIMAT0001738"
FT /product="zma-miR171j-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001134"
XX
SQ Sequence 129 BP; 23 A; 38 C; 43 G; 0 T; 25 other;
aauggccgcg agcuagacgg gguauugacg cgguucaauu cgagagcucg agcccuagca 60
gaggccaggg gggguggggc ucugcucucu gauugagccg ugccaauauc acgucccacu 120
cgcccucgc 129
//
ID zma-MIR171e standard; RNA; ZMA; 126 BP.
XX
AC MI0001837;
XX
DE Zea mays miR171e stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0015200"
FT /product="zma-miR171e-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 87..107
FT /accession="MIMAT0001739"
FT /product="zma-miR171e-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001136"
XX
SQ Sequence 126 BP; 28 A; 30 C; 32 G; 0 T; 36 other;
agaaauggaa uaguagcuau gauguuggcu cggcucacuc agacgacgua cgcgcgcgag 60
aucaugugcu augccgcugc uguuucugau ugagccgugc caauaucuua guacucuucc 120
augcau 126
//
ID zma-MIR171i standard; RNA; ZMA; 104 BP.
XX
AC MI0001838;
XX
DE Zea mays miR171i stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0015201"
FT /product="zma-miR171i-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 65..85
FT /accession="MIMAT0001740"
FT /product="zma-miR171i-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001137"
XX
SQ Sequence 104 BP; 21 A; 25 C; 30 G; 0 T; 28 other;
cugguuggcu gagagagugc gauguuggca cgguucaauc aaaucgccgg ccggguugac 60
uuguugauug agccgugcca auaucacaac cuucucuagc cuag 104
//
ID zma-MIR171g standard; RNA; ZMA; 112 BP.
XX
AC MI0001839;
XX
DE Zea mays miR171g stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0015202"
FT /product="zma-miR171g-5p"
FT /evidence=not_experimental
FT /similarity="MI0001138"
FT miRNA 73..93
FT /accession="MIMAT0001741"
FT /product="zma-miR171g-3p"
FT /evidence=not_experimental
FT /similarity="MI0001138"
XX
SQ Sequence 112 BP; 29 A; 31 C; 29 G; 0 T; 23 other;
agaacgaggc gacauggcau gguauugacu uggcucaucu cucgcccaca ccagaaucca 60
caagugccgg aggaggugag ccgagccaau aucacuucau gucaucuagc gu 112
//
ID zma-MIR172e standard; RNA; ZMA; 174 BP.
XX
AC MI0001840;
XX
DE Zea mays miR172e stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 135..155
FT /accession="MIMAT0001742"
FT /product="zma-miR172e"
FT /evidence=not_experimental
FT /similarity="MI0001140"
XX
SQ Sequence 174 BP; 46 A; 38 C; 39 G; 0 T; 51 other;
cagccagccg gugauuucug gaguggcauc aucaagauuc acacacugca ugccaacaua 60
augcgcgugu ucaugcaucc aucgccgccg cugcaucaug caucauauau aauauauaua 120
uauguguaug ugugggaauc uugaugaugc ugcauuggau aucaagggcu auau 174
//
ID zma-MIR166l standard; RNA; ZMA; 137 BP.
XX
AC MI0001841;
XX
DE Zea mays miR166l stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..43
FT /accession="MIMAT0015203"
FT /product="zma-miR166l-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 98..118
FT /accession="MIMAT0001743"
FT /product="zma-miR166l-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001142"
XX
SQ Sequence 137 BP; 31 A; 30 C; 36 G; 0 T; 40 other;
aaagaacggg aggaggguuu cuggaaugga ggcuggucca agauccuuag guguuaaagc 60
auuauauugc cuuguuucug guuuuguguu ugagaucucg gaccaggcuu cauuccucaa 120
acccacgcuc ccgacac 137
//
ID zma-MIR166m standard; RNA; ZMA; 156 BP.
XX
AC MI0001842;
XX
DE Zea mays miR166m stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..43
FT /accession="MIMAT0015204"
FT /product="zma-miR166m-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 117..137
FT /accession="MIMAT0001744"
FT /product="zma-miR166m-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001143"
XX
SQ Sequence 156 BP; 22 A; 46 C; 52 G; 0 T; 36 other;
uccuuggucu ggggguuugu ggggaauguu ggcuggcucg aggcauccgc guccuggcuc 60
gcagucgcag cgcagaucgu guuuugccug cuaccggccg gacagaucga gaggcgucgg 120
accaggcuuc auuccucgca aaccggugca ucccca 156
//
ID zma-MIR171k standard; RNA; ZMA; 104 BP.
XX
AC MI0001843;
XX
DE Zea mays miR171k stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0015205"
FT /product="zma-miR171k-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 65..85
FT /accession="MIMAT0001745"
FT /product="zma-miR171k-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001147"
XX
SQ Sequence 104 BP; 24 A; 20 C; 28 G; 0 T; 32 other;
gggaggaaga agacgacaug gcgugguauu guuucggcuc auguccuucu ugacuggaug 60
ugaugugagc cgaaccaaua ucacucaugu auucuucauu cuga 104
//
ID zma-MIR171h standard; RNA; ZMA; 124 BP.
XX
AC MI0001844;
XX
DE Zea mays miR171h stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0015206"
FT /product="zma-miR171h-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 85..105
FT /accession="MIMAT0001746"
FT /product="zma-miR171h-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001147"
XX
SQ Sequence 124 BP; 25 A; 27 C; 34 G; 0 T; 38 other;
gggaggaagg agacgacaug gcgugguauu guuucggcuc auguccuucu ucgaucgagu 60
cuugccguug gauuuggaug ugaugugagc cgaaccaaua ucacucaugu acucuucauu 120
ccca 124
//
ID zma-MIR393a standard; RNA; ZMA; 126 BP.
XX
AC MI0001845;
XX
DE Zea mays miR393a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0001747"
FT /product="zma-miR393a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001148"
FT miRNA 88..109
FT /accession="MIMAT0015207"
FT /product="zma-miR393a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 126 BP; 27 A; 37 C; 32 G; 0 T; 30 other;
ccaggaagcu gguggaggac uccaaaggga ucgcauugau cuauucucac cugccgccug 60
cugcaugcga ugcgagucga cgacaagauc agugcaaucc cuuuggaauu uuccacucgc 120
gccuuc 126
//
ID zma-MIR408a standard; RNA; ZMA; 191 BP.
XX
AC MI0001846;
XX
DE Zea mays miR408 stem-loop
XX
RN [1]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 152..172
FT /accession="MIMAT0001748"
FT /product="zma-miR408a"
FT /evidence=not_experimental
FT /similarity="MI0001149"
XX
SQ Sequence 191 BP; 37 A; 49 C; 64 G; 0 T; 41 other;
gggguugguu uugauuugga gacagggaug agacagagca ugggaugggg ccaucaacaa 60
aguggaggga cuagcuugcg aggcagaaag aaggugccag ugccggugcc uccccgguga 120
aacgaugaug ggaguguugu ugcucccucc ccugcacugc cucuucccug gcuccgaucc 180
cccaccguug c 191
//
ID zma-MIR156k standard; RNA; ZMA; 123 BP.
XX
AC MI0001847;
XX
DE Zea mays miR156k stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..40
FT /accession="MIMAT0001749"
FT /product="zma-miR156k-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001456"
FT miRNA 85..106
FT /accession="MIMAT0015208"
FT /product="zma-miR156k-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 123 BP; 20 A; 43 C; 37 G; 0 T; 23 other;
ggcuuaggcc ccgaagagau ugacagaaga gagcgagcac cuggcgcggc gaccggcaug 60
gaacgcaugc cguccccgcc gcgugcucgc uucucuuucu gucagccucu cccucguccu 120
gag 123
//
ID zma-MIR160f standard; RNA; ZMA; 116 BP.
XX
AC MI0001848;
XX
DE Zea mays miR160f stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 19936050.
RA Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill
RA K, McMullen MD, Ware D;
RT "A genome-wide characterization of microRNA genes in maize";
RL PLoS Genet. 5:e1000716(2009).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001750"
FT /product="zma-miR160f-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0001479"
FT miRNA 79..99
FT /accession="MIMAT0015209"
FT /product="zma-miR160f-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 116 BP; 21 A; 29 C; 36 G; 0 T; 30 other;
gaggugaaag auagggaaua ugccuggcuc ccuguaugcc gcucgcaugg cuaccaccgc 60
cuguggucgu ugcggcuggc gugcgaggug ccaggcaugu uuuaauaauu aucucc 116
//
ID sbi-MIR399h standard; RNA; SBI; 132 BP.
XX
AC MI0001849;
XX
DE Sorghum bicolor miR399h stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 93..113
FT /accession="MIMAT0001751"
FT /product="sbi-miR399h"
FT /evidence=not_experimental
FT /similarity="MI0001054"
XX
SQ Sequence 132 BP; 33 A; 35 C; 36 G; 0 T; 28 other;
aguguucagg guaagaauca cagugcgguu cuccucuggc auggaggcca acauagcagg 60
cauuggagaa ugcacagcgc uaucgccauc ccugccaaag gagaauugcc cugccauucg 120
guauaacccu gg 132
//
ID sbi-MIR399i standard; RNA; SBI; 121 BP.
XX
AC MI0001850;
XX
DE Sorghum bicolor miR399i stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 82..102
FT /accession="MIMAT0001752"
FT /product="sbi-miR399i"
FT /evidence=not_experimental
FT /similarity="MI0001062"
XX
SQ Sequence 121 BP; 24 A; 32 C; 31 G; 0 T; 34 other;
augccuaagc uguccaguuu cagggcuucu cuuucuuggc agggagcaug agaagccaua 60
gcucugcucu guucugcccu cugccaaagg agaguugccc uguaacagga cucagcuuau 120
g 121
//
ID sbi-MIR159b standard; RNA; SBI; 253 BP.
XX
AC MI0001851;
XX
DE Sorghum bicolor miR159b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 214..234
FT /accession="MIMAT0001753"
FT /product="sbi-miR159b"
FT /evidence=not_experimental
FT /similarity="MI0001097"
XX
SQ Sequence 253 BP; 63 A; 62 C; 69 G; 0 T; 59 other;
ugaaugaaga uaugaagaag aagacgacga cgaugaagaa ggcgaagaaa agcgaacaaa 60
gagcucccuu cgauccaauc caggagggga aguggucggu ugcagcugcc gguucaugga 120
ugccucucug gugcagcaau gacugaugcu caccugcacu ugcaugggug ugcaugaccc 180
gggagaugaa cccaccauca ucuuucccuc gugcuuggau ugaagggagc uccucucucu 240
uucucucuuu cuc 253
//
ID sbi-MIR164c standard; RNA; SBI; 153 BP.
XX
AC MI0001852;
XX
DE Sorghum bicolor miR164c stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0001754"
FT /product="sbi-miR164c"
FT /evidence=not_experimental
FT /similarity="MI0001105"
XX
SQ Sequence 153 BP; 20 A; 44 C; 51 G; 0 T; 38 other;
uauggugugu uugugcaggg uggagaagca ggacacguga gcgaccaucc aguuuccauc 60
gcuggcucuc cgcugcgggc gcugccgugc guuggaucgu cguugggugg ucgcucaugu 120
guccguccuc uccaccgagc accgguacau ccg 153
//
ID sbi-MIR166g standard; RNA; SBI; 134 BP.
XX
AC MI0001853;
XX
DE Sorghum bicolor miR166g stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 95..115
FT /accession="MIMAT0001755"
FT /product="sbi-miR166g"
FT /evidence=not_experimental
FT /similarity="MI0001107"
XX
SQ Sequence 134 BP; 21 A; 31 C; 42 G; 0 T; 40 other;
ucaugcucgg auuagguuag ggggauuguu gucuggcucg gggucuccgg ucgagaaucc 60
uuggccuugc cggaguuguc guugaccgga gauuucggac caggcuucaa ucccuuuaac 120
caugcggcau uuag 134
//
ID sbi-MIR171f standard; RNA; SBI; 119 BP.
XX
AC MI0001854;
XX
DE Sorghum bicolor miR171f stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 80..100
FT /accession="MIMAT0001756"
FT /product="sbi-miR171f"
FT /evidence=not_experimental
FT /similarity="MI0001147"
XX
SQ Sequence 119 BP; 34 A; 23 C; 27 G; 0 T; 35 other;
ugagagaaua agacgacaug gcgugauguu guuucggcuc augcauaucc uucuugagug 60
uaucaucagg aaagaggcga ugagccgaac caauaucacu cauguauucu ucauucaua 119
//
ID sbi-MIR395f standard; RNA; SBI; 122 BP.
XX
AC MI0001855;
XX
DE Sorghum bicolor miR395f stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 83..103
FT /accession="MIMAT0001757"
FT /product="sbi-miR395f"
FT /evidence=not_experimental
FT /similarity="MI0001536"
XX
SQ Sequence 122 BP; 35 A; 22 C; 26 G; 0 T; 39 other;
acaauguuug guguuaccac gaguucccuu caagcacuuc augaggcacc auuaaauaac 60
ucuauuuaag auuaggugua auaugaagug uuugggggaa cucuugguga uacucaacau 120
cg 122
//
ID sbi-MIR156e standard; RNA; SBI; 123 BP.
XX
AC MI0001856;
XX
DE Sorghum bicolor miR156e stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..40
FT /accession="MIMAT0001758"
FT /product="sbi-miR156e"
FT /evidence=not_experimental
FT /similarity="MI0001504"
XX
SQ Sequence 123 BP; 18 A; 42 C; 39 G; 0 T; 24 other;
cgauuaggcc cugaagagau ugacagaaga gagcgagcac ccggcgcggc ggccggcaug 60
gagcgcaugc cguccccgcc gcgugcucgc uucucuuucu gucagccucu cucucguccu 120
ggg 123
//
ID dre-let-7a-1 standard; RNA; DRE; 89 BP.
XX
AC MI0001857;
XX
DE Danio rerio let-7a-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628813; mirlet7a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001759"
FT /product="dre-let-7a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 89 BP; 24 A; 17 C; 23 G; 0 T; 25 other;
gacgguggga ugagguagua gguuguauag uuuuaggguc acacccacac ugggagauaa 60
cuauacaacc uacugucuuu cucaaaguc 89
//
ID dre-let-7a-2 standard; RNA; DRE; 84 BP.
XX
AC MI0001858;
XX
DE Danio rerio let-7a-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628650; mirlet7a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001759"
FT /product="dre-let-7a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 84 BP; 23 A; 19 C; 19 G; 0 T; 23 other;
gcccccaggc ugagguagua gguuguauag uuuagaauaa caucacugga gauaacugua 60
caaccuccua gcuuucccug agau 84
//
ID dre-let-7a-3 standard; RNA; DRE; 107 BP.
XX
AC MI0001860;
XX
DE Danio rerio let-7a-3 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628892; mirlet7a-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0001759"
FT /product="dre-let-7a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 107 BP; 22 A; 18 C; 31 G; 0 T; 36 other;
gagacugucg uuugggguga gguaguaggu uguauaguuu gaggguuuaa cccuugcugu 60
cagauaacua uacaacuuac ugucuuuccc gaaguggccg uaguguc 107
//
ID dre-let-7a-4 standard; RNA; DRE; 93 BP.
XX
AC MI0001861;
XX
DE Danio rerio let-7a-4 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628851; mirlet7a-4.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0001759"
FT /product="dre-let-7a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 93 BP; 23 A; 19 C; 27 G; 0 T; 24 other;
gcgaugucuc gggaugaggu aguagguugu auaguuuaga guuacaacac gggagauaac 60
uguacagccu ccuagcuuuc cucgagcaga cgc 93
//
ID dre-let-7a-5 standard; RNA; DRE; 124 BP.
XX
AC MI0001862;
XX
DE Danio rerio let-7a-5 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628651; mirlet7a-5.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..49
FT /accession="MIMAT0001759"
FT /product="dre-let-7a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 124 BP; 25 A; 21 C; 36 G; 0 T; 42 other;
guacguguuu uuggugucug gacaagguga gguaguaggu uguauaguuu ggugggaggg 60
aucaaacccu guucagcuga uaacuauaca gucuauugcc uuccuugugu caccuaaggu 120
cugc 124
//
ID dre-let-7a-6 standard; RNA; DRE; 129 BP.
XX
AC MI0001863;
XX
DE Danio rerio let-7a-6 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628652; mirlet7a-6.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..50
FT /accession="MIMAT0001759"
FT /product="dre-let-7a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 129 BP; 34 A; 24 C; 33 G; 0 T; 38 other;
cacagugaac cuguguguuu cuucaaggug agguaguagg uuguauaguu ugugggaagg 60
aucacauccu auucagguga uaacuauaca gucuauugcc uucccugaga gacacaauga 120
ccacgagug 129
//
ID dre-let-7b standard; RNA; DRE; 94 BP.
XX
AC MI0001865;
XX
DE Danio rerio let-7b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628814; mirlet7b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001760"
FT /product="dre-let-7b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 94 BP; 18 A; 18 C; 29 G; 0 T; 29 other;
ucggacaggg ugagguagua gguugugugg uuucaggguu guguuuuugc cccaucagga 60
guuaacuaua caaccuacug ccuucccuga aggg 94
//
ID dre-let-7c-1 standard; RNA; DRE; 107 BP.
XX
AC MI0001866;
XX
DE Danio rerio let-7c-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628653; mirlet7c-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0001761"
FT /product="dre-let-7c-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 68..89
FT /accession="MIMAT0031930"
FT /product="dre-let-7c-3p"
FT /evidence=not_experimental
XX
SQ Sequence 107 BP; 23 A; 21 C; 30 G; 0 T; 33 other;
cugagagugu gugcauccag gcugagguag uagguuguau gguuuagaau uuugcccugg 60
gaguuaacug uacaaccuuc uagcuuuccu uggagcucac aagccag 107
//
ID dre-let-7c-2 standard; RNA; DRE; 92 BP.
XX
AC MI0001867;
XX
DE Danio rerio let-7c-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628893; mirlet7c-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0001761"
FT /product="dre-let-7c-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 60..81
FT /accession="MIMAT0031930"
FT /product="dre-let-7c-3p"
FT /evidence=not_experimental
XX
SQ Sequence 92 BP; 21 A; 18 C; 25 G; 0 T; 28 other;
gugugcaucc aggcugaggu aguagguugu augguuucga augacaccau gggaguuaac 60
uguacaaccu ucuagcuuuc cuuggaguac ac 92
//
ID dre-let-7d-1 standard; RNA; DRE; 97 BP.
XX
AC MI0001868;
XX
DE Danio rerio let-7d-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628963; mirlet7d-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0001762"
FT /product="dre-let-7d-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 63..84
FT /accession="MIMAT0031931"
FT /product="dre-let-7d-3p"
FT /evidence=not_experimental
XX
SQ Sequence 97 BP; 18 A; 20 C; 28 G; 0 T; 31 other;
ugugcguugc ggugugaggu aguugguugu augguuuugc auaauaaaca gcccggaguu 60
aacuguacaa ccuucuagcu uucccugcgg cugcacg 97
//
ID dre-let-7d-2 standard; RNA; DRE; 88 BP.
XX
AC MI0001870;
XX
DE Danio rerio let-7d-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628654; mirlet7d-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001762"
FT /product="dre-let-7d-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 59..80
FT /accession="MIMAT0031931"
FT /product="dre-let-7d-3p"
FT /evidence=not_experimental
XX
SQ Sequence 88 BP; 16 A; 19 C; 24 G; 0 T; 29 other;
cgcugcaggc ugagguaguu gguuguaugg uuuugcauca uaaucagccu ggaguuaacu 60
guacaaccuu cuagcuuucc cugcggug 88
//
ID dre-let-7e standard; RNA; DRE; 100 BP.
XX
AC MI0001871;
XX
DE Danio rerio let-7e stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033544; mirlet7e.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0001763"
FT /product="dre-let-7e"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 100 BP; 21 A; 22 C; 26 G; 0 T; 31 other;
gcuguucuug gggcugaggu aguagauuga auaguugugg agcccugcgc ucucucucug 60
agauaacuau acaaucuacu gucuuuccua aggcgacagc 100
//
ID dre-let-7f standard; RNA; DRE; 116 BP.
XX
AC MI0001872;
XX
DE Danio rerio let-7f stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628815; mirlet7f.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0001764"
FT /product="dre-let-7f"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 116 BP; 32 A; 15 C; 31 G; 0 T; 38 other;
ugguaaugcu ugugcagugu gagguaguag auuguauagu uguaggguag ugauuuuauc 60
cuguguagaa gauaacuaua caaucuauug ccuucccuga ggggcagaaa uacaca 116
//
ID dre-let-7g-1 standard; RNA; DRE; 96 BP.
XX
AC MI0001873;
XX
DE Danio rerio let-7g-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628656; mirlet7g-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001765"
FT /product="dre-let-7g"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 96 BP; 22 A; 19 C; 27 G; 0 T; 28 other;
gggggcugug gaaugaggua guaguuugua uaguuuggga ucacaccaga ucugggagau 60
aacuauacag ccuacugucu uucucacagc ugcucc 96
//
ID dre-let-7g-2 standard; RNA; DRE; 97 BP.
XX
AC MI0001874;
XX
DE Danio rerio let-7g-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628894; mirlet7g-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001765"
FT /product="dre-let-7g"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 97 BP; 23 A; 18 C; 26 G; 0 T; 30 other;
guggacugug ggaugaggua guaguuugua uaguuuuagg aucacaccag aucugggaga 60
uaacuauaca gucuacuguc uuucccacgg uuaccgc 97
//
ID dre-let-7h standard; RNA; DRE; 114 BP.
XX
AC MI0001875;
XX
DE Danio rerio let-7h stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628657; mirlet7h.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0001766"
FT /product="dre-let-7h"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 114 BP; 26 A; 16 C; 33 G; 0 T; 39 other;
gaguuggcug uguuguggug agguaguaag uuguguuguu guuggggauc aguauaguau 60
ggcccuugaa ggagauaacu auacaauuua cugccuucca uaaugcagac ucuc 114
//
ID dre-let-7i standard; RNA; DRE; 95 BP.
XX
AC MI0001876;
XX
DE Danio rerio let-7i stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628852; mirlet7i.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001767"
FT /product="dre-let-7i"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 95 BP; 15 A; 18 C; 32 G; 0 T; 30 other;
guguacuggc ugagguagua guuugugcug uugguuggga ugugacauug cccguuaugg 60
agaugacugc gcaagcuacu cccuugccag ugcug 95
//
ID dre-mir-1-2 standard; RNA; DRE; 87 BP.
XX
AC MI0001877;
XX
DE Danio rerio miR-1-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628658; mir1-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..75
FT /accession="MIMAT0001768"
FT /product="dre-miR-1"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 87 BP; 26 A; 13 C; 18 G; 0 T; 30 other;
gccuacuugg uguacauacu ucuuuaugug cccauaugaa cauauaaaag cuauggaaug 60
uaaagaagua uguauucuug gucaggu 87
//
ID dre-mir-1-1 standard; RNA; DRE; 106 BP.
XX
AC MI0001878;
XX
DE Danio rerio miR-1-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033551; mirn1-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 62..83
FT /accession="MIMAT0001768"
FT /product="dre-miR-1"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 106 BP; 35 A; 21 C; 25 G; 0 T; 25 other;
gcccauauau cccgcuuggu agacauacuu cuuuauaugc ccauaugaac aagagcagcu 60
auggaaugua aagaaguaug uaucccaggu gagagaaaaa cggggc 106
//
ID dre-mir-7a-3 standard; RNA; DRE; 120 BP.
XX
AC MI0001879;
XX
DE Danio rerio miR-7a-3 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628951; mir7a-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..50
FT /accession="MIMAT0001266"
FT /product="dre-miR-7a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 120 BP; 33 A; 31 C; 30 G; 0 T; 26 other;
ugugugugug uucugcccuc ugcggagugg aagacuagug auuuuguugu gaaaaugaac 60
aaaaaccaac aacaaaccgc agucguccuc ucagcacggg gcccacaccu gcagagcaca 120
//
ID dre-mir-9-1 standard; RNA; DRE; 87 BP.
XX
AC MI0001880;
XX
DE Danio rerio miR-9-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
RN [2]
RX PUBMED; 15919954.
RA Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de
RA Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH;
RT "MicroRNA expression in zebrafish embryonic development";
RL Science. 309:310-311(2005).
XX
DR ENTREZGENE; 100628659; mir9-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0001769"
FT /product="dre-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 55..75
FT /accession="MIMAT0003156"
FT /product="dre-miR-9-3p"
FT /evidence=experimental
FT /experiment="array [2], in-situ [2]"
XX
SQ Sequence 87 BP; 24 A; 14 C; 19 G; 0 T; 30 other;
gggguuggcu guuaucuuug guuaucuagc uguaugagug uuauucauuc uucauaaagc 60
uagauaaccg aaaguaacaa gaauccc 87
//
ID dre-mir-9-2 standard; RNA; DRE; 136 BP.
XX
AC MI0001881;
XX
DE Danio rerio miR-9-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
RN [2]
RX PUBMED; 15919954.
RA Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de
RA Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH;
RT "MicroRNA expression in zebrafish embryonic development";
RL Science. 309:310-311(2005).
XX
DR ENTREZGENE; 100033554; mirn9-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 42..64
FT /accession="MIMAT0001769"
FT /product="dre-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 80..100
FT /accession="MIMAT0003156"
FT /product="dre-miR-9-3p"
FT /evidence=experimental
FT /experiment="array [2], in-situ [2]"
XX
SQ Sequence 136 BP; 29 A; 28 C; 36 G; 0 T; 43 other;
gcucuccucu ggugacuuuu gcacuuggag gcguguuguu aucuuugguu aucuagcugu 60
augagugugc uggccgucau aaagcuagau aaccgaaagu aagagccgcu ucuaucagca 120
acguauggag cauugc 136
//
ID dre-mir-9-4 standard; RNA; DRE; 87 BP.
XX
AC MI0001882;
XX
DE Danio rerio miR-9-4 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628660; mir9-4.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0001769"
FT /product="dre-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 53..74
FT /accession="MIMAT0031932"
FT /product="dre-miR-9-4-3p"
FT /evidence=not_experimental
XX
SQ Sequence 87 BP; 25 A; 11 C; 17 G; 0 T; 34 other;
uggguuaguu uuucucuuug guuaucuagc uguaugaguu uaugugauau cauaaagcua 60
gagaaccgaa uguauaaacu aauucca 87
//
ID dre-mir-9-3 standard; RNA; DRE; 101 BP.
XX
AC MI0001883;
XX
DE Danio rerio miR-9-3 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
RN [2]
RX PUBMED; 15919954.
RA Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de
RA Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH;
RT "MicroRNA expression in zebrafish embryonic development";
RL Science. 309:310-311(2005).
XX
DR ENTREZGENE; 100628895; mir9-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0001769"
FT /product="dre-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 57..77
FT /accession="MIMAT0003156"
FT /product="dre-miR-9-3p"
FT /evidence=experimental
FT /experiment="array [2], in-situ [2]"
XX
SQ Sequence 101 BP; 30 A; 16 C; 21 G; 0 T; 34 other;
ucaggggguu gguuucucuc uuugguuauc uagcuguaug aguuauaaca cugucauaaa 60
gcuagauaac cgaaaguaga aauaauuccc aaaaucuuug g 101
//
ID dre-mir-9-5 standard; RNA; DRE; 87 BP.
XX
AC MI0001884;
XX
DE Danio rerio miR-9-5 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
RN [2]
RX PUBMED; 15919954.
RA Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de
RA Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH;
RT "MicroRNA expression in zebrafish embryonic development";
RL Science. 309:310-311(2005).
XX
DR ENTREZGENE; 100628896; mir9-5.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0001769"
FT /product="dre-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 54..74
FT /accession="MIMAT0003156"
FT /product="dre-miR-9-3p"
FT /evidence=experimental
FT /experiment="array [2], in-situ [2]"
XX
SQ Sequence 87 BP; 26 A; 15 C; 18 G; 0 T; 28 other;
ggaagcgagu uguuaucuuu gguuaucuag cuguaugagu auuuugcacu ucauaaagcu 60
agauaaccga aaguaaaaac ugccucc 87
//
ID dre-mir-9-6 standard; RNA; DRE; 88 BP.
XX
AC MI0001885;
XX
DE Danio rerio miR-9-6 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
RN [2]
RX PUBMED; 15919954.
RA Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de
RA Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH;
RT "MicroRNA expression in zebrafish embryonic development";
RL Science. 309:310-311(2005).
XX
DR ENTREZGENE; 100033558; mirn9-6.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0001769"
FT /product="dre-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 55..75
FT /accession="MIMAT0003156"
FT /product="dre-miR-9-3p"
FT /evidence=experimental
FT /experiment="array [2], in-situ [2]"
XX
SQ Sequence 88 BP; 23 A; 15 C; 20 G; 0 T; 30 other;
ggagguaguu gcuaucuuug guuaucuagc uguaugagug uuuaucugcc uucauaaagc 60
uagauaaccg aaaguagaaa uguccucc 88
//
ID dre-mir-9-7 standard; RNA; DRE; 84 BP.
XX
AC MI0001886;
XX
DE Danio rerio miR-9-7 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628661; mir9-7.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0001769"
FT /product="dre-miR-9-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 51..72
FT /accession="MIMAT0031933"
FT /product="dre-miR-9-7-3p"
FT /evidence=not_experimental
XX
SQ Sequence 84 BP; 27 A; 11 C; 17 G; 0 T; 29 other;
ggguuaguuu uucucuuugg uuaucuagcu guaugaguua ugaaauauca uaaagcuaga 60
gaaccgaaag uagaaacuau accu 84
//
ID dre-mir-10b-2 standard; RNA; DRE; 92 BP.
XX
AC MI0001887;
XX
DE Danio rerio miR-10b-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628816; mir10b-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0001268"
FT /product="dre-miR-10b-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 57..77
FT /accession="MIMAT0031934"
FT /product="dre-miR-10b-2-3p"
FT /evidence=not_experimental
XX
SQ Sequence 92 BP; 31 A; 20 C; 18 G; 0 T; 23 other;
guagucgucu auauguaccc uguagaaccg aauuuguguc caaaacauca aaaucgcaaa 60
uacgucucua caggaauaca ugggcgacgu aa 92
//
ID dre-mir-10c standard; RNA; DRE; 95 BP.
XX
AC MI0001888;
XX
DE Danio rerio miR-10c stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628662; mir10c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001770"
FT /product="dre-miR-10c-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 58..78
FT /accession="MIMAT0031935"
FT /product="dre-miR-10c-3p"
FT /evidence=not_experimental
XX
SQ Sequence 95 BP; 27 A; 17 C; 22 G; 0 T; 29 other;
ccugucaucu auauauaccc uguagauccg gauuugugua aacagacgca cagucacaaa 60
uucguaucua ggggaguaug uaguugaugu auagg 95
//
ID dre-mir-10d standard; RNA; DRE; 118 BP.
XX
AC MI0001889;
XX
DE Danio rerio miR-10d stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628853; mir10d.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..50
FT /accession="MIMAT0001771"
FT /product="dre-miR-10d-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 68..89
FT /accession="MIMAT0003394"
FT /product="dre-miR-10d-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 118 BP; 32 A; 22 C; 27 G; 0 T; 37 other;
uggaagcuuu guuccgucgu cuauauauac ccuguagaac cgaaugugug uuuacacagc 60
aaauucacag auucgguuuu aggggaguau auggacgaug caaaaacguc ugcuuuca 118
//
ID dre-mir-15a-1 standard; RNA; DRE; 84 BP.
XX
AC MI0001891;
XX
DE Danio rerio miR-15a-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628663; mir15a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001772"
FT /product="dre-miR-15a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 52..73
FT /accession="MIMAT0003395"
FT /product="dre-miR-15a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 84 BP; 19 A; 18 C; 29 G; 0 T; 18 other;
ccugucggua cuguagcagc acagaauggu uugugaguua uaacgggggu gcaggccgua 60
cugugcugcg gcaacaacga cagg 84
//
ID dre-mir-15a-2 standard; RNA; DRE; 102 BP.
XX
AC MI0001892;
XX
DE Danio rerio miR-15a-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033565; mirn15a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0001772"
FT /product="dre-miR-15a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 102 BP; 23 A; 22 C; 33 G; 0 T; 24 other;
gccgaggcuc ucuaggugau gguguagcag cacagaaugg uuugugguga uacagagaug 60
caggccauga ugugcugcag caucaauucc ugggaccuac gc 102
//
ID dre-mir-15b standard; RNA; DRE; 134 BP.
XX
AC MI0001893;
XX
DE Danio rerio miR-15b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628897; mir15b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..60
FT /accession="MIMAT0001773"
FT /product="dre-miR-15b-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 79..100
FT /accession="MIMAT0031936"
FT /product="dre-miR-15b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 134 BP; 30 A; 29 C; 32 G; 0 T; 43 other;
gucugucguc aucuuuuuau uuagcccuga gugcccugua gcagcacauc augguuugua 60
aguuauaagg gcaaauuccg aaucaugaug ugcugucacu gggagccugg gaguuucucc 120
auuaacauga cagc 134
//
ID dre-mir-16a standard; RNA; DRE; 87 BP.
XX
AC MI0001894;
XX
DE Danio rerio miR-16a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628664; mir16a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0001774"
FT /product="dre-miR-16a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 87 BP; 21 A; 20 C; 20 G; 0 T; 26 other;
ccuuccucgc uuuagcagca cguaaauauu gguguguuau agucaaggcc aaccccaaua 60
uuaugugugc ugcuucagua aggcagg 87
//
ID dre-mir-16b standard; RNA; DRE; 140 BP.
XX
AC MI0001895;
XX
DE Danio rerio miR-16b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628884; mir16b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..60
FT /accession="MIMAT0001775"
FT /product="dre-miR-16b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 140 BP; 25 A; 36 C; 46 G; 0 T; 33 other;
ccugaacuug gccgugugac agacuggcug ccuggcugua gcagcacgua aauauuggag 60
ucaaagcacu ugcgaauccu ccaguauuga ccgugcugcu ggaguuaggc gggccguuua 120
ccgucugcgg gggccucggg 140
//
ID dre-mir-16c standard; RNA; DRE; 136 BP.
XX
AC MI0001896;
XX
DE Danio rerio miR-16c stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033569; mirn16c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 35..56
FT /accession="MIMAT0001776"
FT /product="dre-miR-16c-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 76..98
FT /accession="MIMAT0031937"
FT /product="dre-miR-16c-3p"
FT /evidence=not_experimental
XX
SQ Sequence 136 BP; 29 A; 30 C; 35 G; 0 T; 42 other;
gagguugugu gugugugcgu guguugucuu gcuuuagcag cauguaaaua uuggaguuac 60
uccuuggcca augccuccaa uauugcucgu gcugcugaag caagaaguca ccaagcagca 120
caugcacguc auccuu 136
//
ID dre-mir-17a-1 standard; RNA; DRE; 138 BP.
XX
AC MI0001897;
XX
DE Danio rerio miR-17a-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628665; mir17a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 41..62
FT /accession="MIMAT0001777"
FT /product="dre-miR-17a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 79..100
FT /accession="MIMAT0003396"
FT /product="dre-miR-17a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 138 BP; 33 A; 28 C; 32 G; 0 T; 45 other;
ggacuuucuu gaguggacuu gguugguguc aauguauugu caaagugcuu acagugcagg 60
uaguauuaug gaauaucuac ugcaguggag gcacuucuag caauacacuu gaccauuuua 120
accuuccucc aggcaucc 138
//
ID dre-mir-17a-2 standard; RNA; DRE; 83 BP.
XX
AC MI0001898;
XX
DE Danio rerio miR-17a-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628666; mir17a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001777"
FT /product="dre-miR-17a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 50..72
FT /accession="MIMAT0031938"
FT /product="dre-miR-17a-2-3p"
FT /evidence=not_experimental
XX
SQ Sequence 83 BP; 22 A; 17 C; 20 G; 0 T; 24 other;
gucacuguag ugucaaagug cuuacagugc agguaguuca auauaaucua cugcagugga 60
ggcacuucaa gcuuuaccgu gac 83
//
ID dre-mir-20b standard; RNA; DRE; 94 BP.
XX
AC MI0001899;
XX
DE Danio rerio miR-20b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628898; mir20b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0001778"
FT /product="dre-miR-20b-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 56..78
FT /accession="MIMAT0031939"
FT /product="dre-miR-20b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 94 BP; 19 A; 24 C; 25 G; 0 T; 26 other;
gaguuugucc uggcaguucc aaagugcuca cagugcaggu agugccagug gaucuacugc 60
aaugucugca cuucaaguau ugccggacgc cuuc 94
//
ID dre-mir-18a standard; RNA; DRE; 83 BP.
XX
AC MI0001900;
XX
DE Danio rerio miR-18a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628854; mir18a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001779"
FT /product="dre-miR-18a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 83 BP; 18 A; 19 C; 24 G; 0 T; 22 other;
ggcuuugugc uaaggugcau cuagugcaga uagugaagua gacuagcacc uacugcccua 60
agugcuccuu cuggcacgag ggu 83
//
ID dre-mir-18b standard; RNA; DRE; 87 BP.
XX
AC MI0001901;
XX
DE Danio rerio miR-18b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628667; mir18b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0001780"
FT /product="dre-miR-18b-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 55..76
FT /accession="MIMAT0003397"
FT /product="dre-miR-18b-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 87 BP; 22 A; 20 C; 21 G; 0 T; 24 other;
uacugcuuau gcuaaggugc auuuagugca gauagugaaa uagacuagca ccuacugccc 60
uaagugcccc uucuggcaua aggggcu 87
//
ID dre-mir-18c standard; RNA; DRE; 85 BP.
XX
AC MI0001902;
XX
DE Danio rerio miR-18c stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628817; mir18c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001781"
FT /product="dre-miR-18c"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 85 BP; 16 A; 16 C; 23 G; 0 T; 30 other;
gccuuccugc uaaggugcau cuuguguagu uagugaagua gucuaguauc uacugcgcua 60
gauguuccuu uuggcaggag uagcu 85
//
ID dre-mir-19a standard; RNA; DRE; 89 BP.
XX
AC MI0001903;
XX
DE Danio rerio miR-19a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628668; mir19a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0003398"
FT /product="dre-miR-19a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 53..75
FT /accession="MIMAT0001782"
FT /product="dre-miR-19a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 89 BP; 22 A; 17 C; 24 G; 0 T; 26 other;
uggugcaguu cucugcuagu uuugcauagu ugcacuacaa gaaaacggga guugugcaaa 60
ucuaugcaaa acugauggug gccugcugc 89
//
ID dre-mir-19b standard; RNA; DRE; 87 BP.
XX
AC MI0001904;
XX
DE Danio rerio miR-19b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628669; mir19b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0003399"
FT /product="dre-miR-19b-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 55..77
FT /accession="MIMAT0001783"
FT /product="dre-miR-19b-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 87 BP; 17 A; 21 C; 23 G; 0 T; 26 other;
gcuggacccc cggucaguuu ugcugguuug cauucagcuu uuaagacugu gcgcugugca 60
aauccaugca aaacugauug uggcagc 87
//
ID dre-mir-19c standard; RNA; DRE; 105 BP.
XX
AC MI0001905;
XX
DE Danio rerio miR-19c stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628899; mir19c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..47
FT /accession="MIMAT0031940"
FT /product="dre-miR-19c-5p"
FT /evidence=not_experimental
FT miRNA 64..86
FT /accession="MIMAT0001784"
FT /product="dre-miR-19c-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 105 BP; 28 A; 25 C; 26 G; 0 T; 26 other;
uggaaaagcc cuguuaucug gggugaguuu ugcaggauug cauccggcuu uauuacaaca 60
ugcugugcaa auccaugcaa aacucgcugc gccagggaca aacca 105
//
ID dre-mir-19d standard; RNA; DRE; 87 BP.
XX
AC MI0001906;
XX
DE Danio rerio miR-19d stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628670; mir19d.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0031941"
FT /product="dre-miR-19d-5p"
FT /evidence=not_experimental
FT miRNA 53..75
FT /accession="MIMAT0001785"
FT /product="dre-miR-19d-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 87 BP; 14 A; 24 C; 30 G; 0 T; 19 other;
guugugugac ggucagcuuu gcgggguggg cagucagccu ccguguggcc gcugugcaaa 60
cccaugcaaa acugagcgcu gcgcuac 87
//
ID dre-mir-20a standard; RNA; DRE; 153 BP.
XX
AC MI0001907;
XX
DE Danio rerio miR-20a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628671; mir20a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..73
FT /accession="MIMAT0001786"
FT /product="dre-miR-20a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 88..109
FT /accession="MIMAT0003400"
FT /product="dre-miR-20a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 153 BP; 38 A; 26 C; 35 G; 0 T; 54 other;
ucuuaaauaa aucuccuaau guugcaguug uguuagaguu ucagcagugc uaaagugcuu 60
auagugcagg uaguauuucu gucaucuacu gcagugugag cacuugaagu acuucuagcu 120
uaaugcgucu gggauccgaa gauuucugcu aga 153
//
ID dre-mir-21-1 standard; RNA; DRE; 148 BP.
XX
AC MI0001908;
XX
DE Danio rerio miR-21-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628952; mir21-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..71
FT /accession="MIMAT0001787"
FT /product="dre-miR-21"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 148 BP; 31 A; 28 C; 35 G; 0 T; 54 other;
uuaugugucu uuauuggcgu ggauauaagu cuuucccagu gugucagaua gcuuaucaga 60
cugguguugg cuguuacauu cgcccggcga caacagucug uaggcugucu gacauuuugg 120
gcauuuucuu cuccgauuaa aaauauga 148
//
ID dre-mir-21-2 standard; RNA; DRE; 127 BP.
XX
AC MI0001909;
XX
DE Danio rerio miR-21-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628964; mir21-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 34..56
FT /accession="MIMAT0001787"
FT /product="dre-miR-21"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 127 BP; 27 A; 22 C; 32 G; 0 T; 46 other;
agacagacag uaaaaguguc ccuuucuguc auguagcuua ucagacuggu guuggcuuug 60
aguuuuuggc aacagcaguc uaauaggcug ucugacauuu ugggcuuauu cgacguacgg 120
uuuguuu 127
//
ID dre-mir-22a standard; RNA; DRE; 86 BP.
XX
AC MI0001910;
XX
DE Danio rerio miR-22a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628672; mir22a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0031942"
FT /product="dre-miR-22a-5p"
FT /evidence=not_experimental
FT miRNA 55..76
FT /accession="MIMAT0001788"
FT /product="dre-miR-22a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 86 BP; 17 A; 21 C; 23 G; 0 T; 25 other;
gcugaccugc agcaguucuu cacuggcaag cuuuaugucc uuguguacca gcuaaagcug 60
ccagcugaag aacuguugug guuggc 86
//
ID dre-mir-22b standard; RNA; DRE; 82 BP.
XX
AC MI0001912;
XX
DE Danio rerio miR-22b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628900; mir22b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0031943"
FT /product="dre-miR-22b-5p"
FT /evidence=not_experimental
FT miRNA 51..72
FT /accession="MIMAT0001789"
FT /product="dre-miR-22b-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 82 BP; 17 A; 18 C; 21 G; 0 T; 26 other;
guuacuucac agucguucuu cacuggcuag cuuuaugugg cagcaccuua aagcugccag 60
uugaagagcu guugugggua ac 82
//
ID dre-mir-23a-1 standard; RNA; DRE; 89 BP.
XX
AC MI0001913;
XX
DE Danio rerio miR-23a-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628673; mir23a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..77
FT /accession="MIMAT0001790"
FT /product="dre-miR-23a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 89 BP; 21 A; 19 C; 28 G; 0 T; 21 other;
gcuguggcgg ggaggguucc uggcaccgug auuuggugga uaaacagaaa ugaaaaucac 60
auugccaggg auuuccacuc cugcacggu 89
//
ID dre-mir-23a-2 standard; RNA; DRE; 98 BP.
XX
AC MI0001915;
XX
DE Danio rerio miR-23a-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0031944"
FT /product="dre-miR-23a-5p"
FT /evidence=not_experimental
FT miRNA 57..78
FT /accession="MIMAT0001790"
FT /product="dre-miR-23a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 98 BP; 23 A; 23 C; 25 G; 0 T; 27 other;
cucuucugcc ggccagggga auuccuggca gagugauuuu uaaaccuaau gacugaauca 60
cauugccagg gauuuccaau ggcucgugug acucagag 98
//
ID dre-mir-23a-3 standard; RNA; DRE; 78 BP.
XX
AC MI0001916;
XX
DE Danio rerio miR-23a-3 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628818; mir23a-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0031945"
FT /product="dre-miR-23a-3-5p"
FT /evidence=not_experimental
FT miRNA 48..69
FT /accession="MIMAT0001790"
FT /product="dre-miR-23a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 78 BP; 21 A; 16 C; 20 G; 0 T; 21 other;
ccagcuggag ggauuccugg cagagugauu ugggauuaua ucauaaaauc acauugccag 60
ggauuuccaa ccagcugu 78
//
ID dre-mir-23b standard; RNA; DRE; 81 BP.
XX
AC MI0001917;
XX
DE Danio rerio miR-23b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628675; mir23b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..72
FT /accession="MIMAT0001791"
FT /product="dre-miR-23b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 81 BP; 22 A; 16 C; 20 G; 0 T; 23 other;
guggcugugu ggguucuugg caugcugauu ugugacugua guaaaaaaaa aucacauugc 60
cagggauuac cacacuacca c 81
//
ID dre-mir-24-4 standard; RNA; DRE; 90 BP.
XX
AC MI0001918;
XX
DE Danio rerio miR-24-4 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033590; mirn24-4.
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..77
FT /accession="MIMAT0001792"
FT /product="dre-miR-24"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 90 BP; 18 A; 19 C; 26 G; 0 T; 27 other;
gagggcuguu cccacuugug ccugcuaaac ugguaucagu auguugauuu agugcuggcu 60
caguucagca ggaacaggug ugaaguccuc 90
//
ID dre-mir-24-2 standard; RNA; DRE; 82 BP.
XX
AC MI0001919;
XX
DE Danio rerio miR-24-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628901; mir24-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..72
FT /accession="MIMAT0001792"
FT /product="dre-miR-24"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 82 BP; 12 A; 20 C; 30 G; 0 T; 20 other;
gggcuggucu ccugugccug cugugcugau aaucagugga cggcugugac uggcucaguu 60
cagcaggaac aggggccugg uc 82
//
ID dre-mir-24-3 standard; RNA; DRE; 142 BP.
XX
AC MI0001920;
XX
DE Danio rerio miR-24-3 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628676; mir24-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 80..101
FT /accession="MIMAT0001792"
FT /product="dre-miR-24"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 142 BP; 38 A; 38 C; 37 G; 0 T; 29 other;
gcugaacggg agucauauga gagauagaug gagcuggccu cccgugccua cugagcugau 60
uacaguacug ugcaaacacu ggcucaguuc agcaggaaca ggagucuggu ccacaaacuc 120
caccaaacac ugcugcuuca gc 142
//
ID dre-mir-24-1 standard; RNA; DRE; 80 BP.
XX
AC MI0001921;
XX
DE Danio rerio miR-24-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628855; mir24-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..70
FT /accession="MIMAT0001792"
FT /product="dre-miR-24"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 80 BP; 18 A; 19 C; 23 G; 0 T; 20 other;
accugagcuc cggugccuuc ugagcugaua ucaguuguag uaaaucacug gcucaguuca 60
gcaggaacag gaguguggcc 80
//
ID dre-mir-25 standard; RNA; DRE; 82 BP.
XX
AC MI0001922;
XX
DE Danio rerio miR-25 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628677; mir25.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0031946"
FT /product="dre-miR-25-5p"
FT /evidence=not_experimental
FT miRNA 51..72
FT /accession="MIMAT0001793"
FT /product="dre-miR-25-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 82 BP; 13 A; 23 C; 30 G; 0 T; 16 other;
gccggcgcug agaggcggag acuugggcag cugccgucau ucccagaagg cauugcacuu 60
gucucggucu gacaguggcg gc 82
//
ID dre-mir-26a-1 standard; RNA; DRE; 78 BP.
XX
AC MI0001923;
XX
DE Danio rerio miR-26a-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628819; mir26a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001794"
FT /product="dre-miR-26a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 49..70
FT /accession="MIMAT0031947"
FT /product="dre-miR-26a-3p"
FT /evidence=not_experimental
XX
SQ Sequence 78 BP; 18 A; 13 C; 24 G; 0 T; 23 other;
uuuggccugg uucaaguaau ccaggauagg cuugugaugu ccggaaagcc uauucgggau 60
gacuugguuc aggaauga 78
//
ID dre-mir-26a-2 standard; RNA; DRE; 128 BP.
XX
AC MI0001925;
XX
DE Danio rerio miR-26a-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033596; mir26a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 37..58
FT /accession="MIMAT0001794"
FT /product="dre-miR-26a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 73..94
FT /accession="MIMAT0031948"
FT /product="dre-miR-26a-2-3p"
FT /evidence=not_experimental
XX
SQ Sequence 128 BP; 23 A; 28 C; 37 G; 0 T; 40 other;
guguggacuu gagugcugga agugguuguu cccuuguuca aguaauccag gauaggcugu 60
cuguccugga ggccuauuca ugauuacuug cacuaggugg cagccguugc ccuucaugga 120
acucaugc 128
//
ID dre-mir-26a-3 standard; RNA; DRE; 137 BP.
XX
AC MI0001926;
XX
DE Danio rerio miR-26a-3 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628902; mir26a-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..60
FT /accession="MIMAT0001794"
FT /product="dre-miR-26a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 137 BP; 35 A; 25 C; 39 G; 0 T; 38 other;
cuaagcugau acugagucag uguguggcug caaccugguu caaguaaucc aggauaggcu 60
uuguggacua ggguuggccu guucuugguu acuugcacug gguugcagcu acuaaacaac 120
uaagaagauc agaagag 137
//
ID dre-mir-26b standard; RNA; DRE; 97 BP.
XX
AC MI0001927;
XX
DE Danio rerio miR-26b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628679; mir26b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0001795"
FT /product="dre-miR-26b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 97 BP; 19 A; 21 C; 26 G; 0 T; 31 other;
gcauuuggcc uuugccuggu ucaaguaauc caggauaggu uaguucccac uaguacggcc 60
uauucuuggu uacuuguuuc aggaggaggc uacgagc 97
//
ID dre-mir-27a standard; RNA; DRE; 131 BP.
XX
AC MI0001928;
XX
DE Danio rerio miR-27a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628680; mir27a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 37..60
FT /accession="MIMAT0031949"
FT /product="dre-miR-27a-5p"
FT /evidence=not_experimental
FT miRNA 79..100
FT /accession="MIMAT0001796"
FT /product="dre-miR-27a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 131 BP; 29 A; 33 C; 33 G; 0 T; 36 other;
ucuggauaug augucugcug aaguuucgug aggugcagga cuuagcucac ucugugaaca 60
gaucucggau auccuauguu cacaguggcu aaguuccgcu ccucugaggc ccacacucga 120
aaucagccag g 131
//
ID dre-mir-27b standard; RNA; DRE; 91 BP.
XX
AC MI0001929;
XX
DE Danio rerio miR-27b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628681; mir27b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..40
FT /accession="MIMAT0031950"
FT /product="dre-miR-27b-5p"
FT /evidence=not_experimental
FT miRNA 57..78
FT /accession="MIMAT0001797"
FT /product="dre-miR-27b-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 91 BP; 21 A; 15 C; 26 G; 0 T; 29 other;
ucuuuucuag caggugcaga gcuuagcuga uuggugaaca gugauugaac ucuuuguuca 60
caguggcuaa guucugcauc ugaggagagg a 91
//
ID dre-mir-27c standard; RNA; DRE; 88 BP.
XX
AC MI0001930;
XX
DE Danio rerio miR-27c stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628820; mir27c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..40
FT /accession="MIMAT0003401"
FT /product="dre-miR-27c-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 56..76
FT /accession="MIMAT0001798"
FT /product="dre-miR-27c-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 88 BP; 20 A; 22 C; 21 G; 0 T; 25 other;
gguugugugg ugucaggacu uaacccacuu gugaacaaug caucgaacuu caauguucac 60
agugguuaag uucugccgcc ccuagacc 88
//
ID dre-mir-27d standard; RNA; DRE; 89 BP.
XX
AC MI0001931;
XX
DE Danio rerio miR-27d stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628856; mir27d.
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..78
FT /accession="MIMAT0001799"
FT /product="dre-miR-27d"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 89 BP; 18 A; 16 C; 27 G; 0 T; 28 other;
uucugagcgg gugcagagcu uggcugauug gugaacgugc auggcuugug uuuuuguuca 60
caguggcuaa guucuucacc cgaaaagaa 89
//
ID dre-mir-27e standard; RNA; DRE; 106 BP.
XX
AC MI0001932;
XX
DE Danio rerio miR-27e stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033604; mirn27e.
XX
FH Key Location/Qualifiers
FH
FT miRNA 65..86
FT /accession="MIMAT0001800"
FT /product="dre-miR-27e"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 106 BP; 27 A; 24 C; 29 G; 0 T; 26 other;
gucaucacuc gcucacggcg cagagcuuag cuaaucggug agcauugauc ccuuaagaaa 60
acuguucaca guggcuaagu ucagugucug gagugaacgg gaugac 106
//
ID dre-mir-29b-1 standard; RNA; DRE; 83 BP.
XX
AC MI0001933;
XX
DE Danio rerio miR-29b-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628903; mir29b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..73
FT /accession="MIMAT0001801"
FT /product="dre-miR-29b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 83 BP; 19 A; 18 C; 21 G; 0 T; 25 other;
cugcuccugg aagcugaauu cagauggugc cauagaguau uuuauggcau cuagcaccau 60
uugaaaucag uguuccuggg ccg 83
//
ID dre-mir-29b-2 standard; RNA; DRE; 88 BP.
XX
AC MI0001934;
XX
DE Danio rerio miR-29b-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628682; mir29b-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 55..76
FT /accession="MIMAT0001801"
FT /product="dre-miR-29b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 88 BP; 18 A; 17 C; 23 G; 0 T; 30 other;
ucuuccucca gaugcugguu ucacauggug guuuagaugu guucuaccaa agucuagcac 60
cauuugaaau caguguucuu ggggaggg 88
//
ID dre-mir-29a standard; RNA; DRE; 126 BP.
XX
AC MI0001938;
XX
DE Danio rerio miR-29a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628904; mir29a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 81..102
FT /accession="MIMAT0001802"
FT /product="dre-miR-29a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 126 BP; 29 A; 36 C; 20 G; 0 T; 41 other;
ugaagacccu caucucucuc ucucucuccc caccaaacga ugacugauuu ccuuuggugc 60
uuagaguccc aucugucauc uagcaccauu ugaaaucggu uauaaugacu ggggaucaau 120
ucuuca 126
//
ID dre-mir-30a standard; RNA; DRE; 89 BP.
XX
AC MI0001940;
XX
DE Danio rerio miR-30a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033609; mir30a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001803"
FT /product="dre-miR-30a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 57..78
FT /accession="MIMAT0031951"
FT /product="dre-miR-30a-3p"
FT /evidence=not_experimental
XX
SQ Sequence 89 BP; 19 A; 20 C; 22 G; 0 T; 28 other;
ggcuccuugc aguuguaaac auucccgacu ggaaguugua augcagaaaa ucucagcuuu 60
cagucugaug uuugcugcua cugguggcc 89
//
ID dre-mir-30b standard; RNA; DRE; 88 BP.
XX
AC MI0001941;
XX
DE Danio rerio miR-30b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628684; mir30b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001804"
FT /product="dre-miR-30b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 88 BP; 16 A; 19 C; 30 G; 0 T; 23 other;
uuccagugua gucgcuguaa acauccuaca cucagcugug agcugcagac gaggcugggc 60
ggaggguguu ugcugugacu gucuggag 88
//
ID dre-mir-30c standard; RNA; DRE; 79 BP.
XX
AC MI0001944;
XX
DE Danio rerio miR-30c stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628685; mir30c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001805"
FT /product="dre-miR-30c-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 50..71
FT /accession="MIMAT0031952"
FT /product="dre-miR-30c-3p"
FT /evidence=not_experimental
XX
SQ Sequence 79 BP; 14 A; 21 C; 26 G; 0 T; 18 other;
cuucagggag uguaaacauc cuacacucuc agcuggagcg cagccgaggc cgggaguggg 60
auguuugcgc ucucuggcu 79
//
ID dre-mir-30d standard; RNA; DRE; 128 BP.
XX
AC MI0001946;
XX
DE Danio rerio miR-30d stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628857; mir30d.
XX
FH Key Location/Qualifiers
FH
FT miRNA 35..56
FT /accession="MIMAT0001806"
FT /product="dre-miR-30d"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 128 BP; 25 A; 28 C; 33 G; 0 T; 42 other;
gugcuguaua uggguauaac ugguuguuca ugccuguaaa cauccccgac uggaagcugu 60
gcuacgcgga aaacgagcuu ucaguuggau guuugcuguc aucguccagu ucugucgccu 120
uguauuac 128
//
ID dre-mir-30e-2 standard; RNA; DRE; 80 BP.
XX
AC MI0001950;
XX
DE Danio rerio miR-30e-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628686; mir30e-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001807"
FT /product="dre-miR-30e-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 51..72
FT /accession="MIMAT0003402"
FT /product="dre-miR-30e-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 80 BP; 19 A; 18 C; 22 G; 0 T; 21 other;
uacgggcuac uguaaacauc cuugacugga agcuggugca caugauggag cuuucagucg 60
gauguuugca gcagccaacu 80
//
ID dre-mir-92a-1 standard; RNA; DRE; 85 BP.
XX
AC MI0001951;
XX
DE Danio rerio miR-92a-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628905; mir92a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0031953"
FT /product="dre-miR-92a-5p"
FT /evidence=not_experimental
FT miRNA 54..75
FT /accession="MIMAT0001808"
FT /product="dre-miR-92a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 85 BP; 13 A; 15 C; 27 G; 0 T; 30 other;
uggucccuuu cugcgcaggu ugggauuggu agcaaugcug uguguuuuga agguauugca 60
cuugucccgg ccuguaaagg auugu 85
//
ID dre-mir-92a-2 standard; RNA; DRE; 95 BP.
XX
AC MI0001952;
XX
DE Danio rerio miR-92a-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628971; mir92a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..42
FT /accession="MIMAT0031954"
FT /product="dre-miR-92a-2-5p"
FT /evidence=not_experimental
FT miRNA 55..76
FT /accession="MIMAT0001808"
FT /product="dre-miR-92a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 95 BP; 18 A; 22 C; 28 G; 0 T; 27 other;
acagcauccc uuucuuugca gguugggauc ggccgcaaug cucugugcug gaaguauugc 60
acuugucccg gccugugaag agcaugggaa auugu 95
//
ID dre-mir-92b standard; RNA; DRE; 82 BP.
XX
AC MI0001953;
XX
DE Danio rerio miR-92b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628687; mir92b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0031955"
FT /product="dre-miR-92b-5p"
FT /evidence=not_experimental
FT miRNA 56..77
FT /accession="MIMAT0001809"
FT /product="dre-miR-92b-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 82 BP; 12 A; 24 C; 24 G; 0 T; 22 other;
uccuacgggc agggaggugu gggauguugu gcaguguugu ucaaucuccc gccaauauug 60
cacucguccc ggccucccug ac 82
//
ID dre-mir-93 standard; RNA; DRE; 74 BP.
XX
AC MI0001954;
XX
DE Danio rerio miR-93 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628688; mir93.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0001810"
FT /product="dre-miR-93"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 74 BP; 17 A; 15 C; 19 G; 0 T; 23 other;
guguguguua aaagugcugu uugugcaggu aguguguuuc cucuacugua ggagcagcac 60
uucacaacac acac 74
//
ID dre-mir-96 standard; RNA; DRE; 125 BP.
XX
AC MI0001955;
XX
DE Danio rerio miR-96 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628689; mir96.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0001811"
FT /product="dre-miR-96-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 66..87
FT /accession="MIMAT0031956"
FT /product="dre-miR-96-3p"
FT /evidence=not_experimental
XX
SQ Sequence 125 BP; 35 A; 24 C; 24 G; 0 T; 42 other;
gcugggcgcu cuucuuugcc uguuuuggca cuagcacauu uuugcuuuuu uauauauacc 60
uugagcaauu auguguagug ccaauauggg acaagacaga caugcuacuu aaaaaaaaaa 120
ucagc 125
//
ID dre-mir-99-1 standard; RNA; DRE; 84 BP.
XX
AC MI0001956;
XX
DE Danio rerio miR-99-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628690; mir99-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001812"
FT /product="dre-miR-99"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 84 BP; 16 A; 19 C; 20 G; 0 T; 29 other;
gccacuuguc auuaacccgu agauccgauc uugugauaag uuugauggca caagcucgau 60
ucuauggguc ucugucucug uggu 84
//
ID dre-mir-99-2 standard; RNA; DRE; 80 BP.
XX
AC MI0001957;
XX
DE Danio rerio miR-99-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033620; mirn99-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0001812"
FT /product="dre-miR-99"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 80 BP; 16 A; 23 C; 19 G; 0 T; 22 other;
cacuugucac aaacccguag auccgaucuu guggcguaau cggcaaccca agcucgauuc 60
ugugggucuc ugucacugug 80
//
ID dre-mir-100-1 standard; RNA; DRE; 96 BP.
XX
AC MI0001958;
XX
DE Danio rerio miR-100-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628906; mir100-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0001813"
FT /product="dre-miR-100-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 59..80
FT /accession="MIMAT0031957"
FT /product="dre-miR-100-3p"
FT /evidence=not_experimental
XX
SQ Sequence 96 BP; 22 A; 25 C; 23 G; 0 T; 26 other;
gaagagaccu gccugcugac acaaacccgu agauccgaac uuguggugac uguccacaca 60
agcuuguauc uauagguauc ugucugugug gccuuc 96
//
ID dre-mir-100-2 standard; RNA; DRE; 75 BP.
XX
AC MI0001959;
XX
DE Danio rerio miR-100-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628821; mir100-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001813"
FT /product="dre-miR-100-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 46..67
FT /accession="MIMAT0031958"
FT /product="dre-miR-100-2-3p"
FT /evidence=not_experimental
XX
SQ Sequence 75 BP; 15 A; 19 C; 20 G; 0 T; 21 other;
agcugccaca aacccguaga uccgaacuug uggugucucu gugcacaagc ucgugucuau 60
agguaugugu cugcg 75
//
ID dre-mir-101a standard; RNA; DRE; 81 BP.
XX
AC MI0001960;
XX
DE Danio rerio miR-101a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628965; mir101a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..71
FT /accession="MIMAT0001814"
FT /product="dre-miR-101a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 81 BP; 18 A; 18 C; 22 G; 0 T; 23 other;
ggcugcccug guucaguuau cacagugcug augcugucca ucuuaaaggu acaguacugu 60
gauaacugaa ggauggcugc c 81
//
ID dre-mir-101b standard; RNA; DRE; 112 BP.
XX
AC MI0001961;
XX
DE Danio rerio miR-101b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033624; mir101b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 64..85
FT /accession="MIMAT0001815"
FT /product="dre-miR-101b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 112 BP; 27 A; 24 C; 27 G; 0 T; 34 other;
gcuccuccgu caugaauugu ccauuuucag uuaucauggu accggugcug ugugccuguc 60
aaguacagua cuaugauaac ugaagauuga cggugccaaa caucagugga gu 112
//
ID dre-mir-103 standard; RNA; DRE; 88 BP.
XX
AC MI0001962;
XX
DE Danio rerio miR-103 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628692; mir103.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..75
FT /accession="MIMAT0001816"
FT /product="dre-miR-103"
FT /evidence=not_experimental
FT /similarity="MI0000108"
XX
SQ Sequence 88 BP; 15 A; 24 C; 26 G; 0 T; 23 other;
uugcccuggu cugucagccu cuuuacggug cugccuugug gaaucuggau caagcagcau 60
uguacagggc uaugagagac ccgggccc 88
//
ID dre-mir-107a standard; RNA; DRE; 89 BP.
XX
AC MI0001963;
XX
DE Danio rerio miR-107 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628693; mir107.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..36
FT /accession="MIMAT0031959"
FT /product="dre-miR-107a-5p"
FT /evidence=not_experimental
FT miRNA 51..73
FT /accession="MIMAT0001817"
FT /product="dre-miR-107a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000114"
XX
SQ Sequence 89 BP; 20 A; 20 C; 23 G; 0 T; 26 other;
ucugugugcu cugagcuucu uuacaguguu gucuuguggc auggagauca agcagcauug 60
uacagggcua ucacagcaca cugaacagc 89
//
ID dre-mir-122 standard; RNA; DRE; 76 BP.
XX
AC MI0001965;
XX
DE Danio rerio miR-122 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628907; mir122.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001818"
FT /product="dre-miR-122"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 76 BP; 20 A; 17 C; 18 G; 0 T; 21 other;
uccagagcug uggaguguga caaugguguu uguaucaucu gucgucaaac gccauuauca 60
cacuaaauag ccacgg 76
//
ID dre-mir-124-1 standard; RNA; DRE; 82 BP.
XX
AC MI0001966;
XX
DE Danio rerio miR-124-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628822; mir124-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..72
FT /accession="MIMAT0001819"
FT /product="dre-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 82 BP; 19 A; 20 C; 20 G; 0 T; 23 other;
ggcucucgcu guacguguuc acaguggacc uugauuuauu guauuucaau uaaggcacgc 60
ggugaaugcc aacagcacag cc 82
//
ID dre-mir-124-2 standard; RNA; DRE; 83 BP.
XX
AC MI0001967;
XX
DE Danio rerio miR-124-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628694; mir124-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0031960"
FT /product="dre-miR-124-5p"
FT /evidence=not_experimental
FT miRNA 52..73
FT /accession="MIMAT0001819"
FT /product="dre-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 83 BP; 21 A; 19 C; 20 G; 0 T; 23 other;
ccugcuuuuc uucguguuca cagcggaccu ugauuuaaau guccauacaa uuaaggcacg 60
cggugaaugc caagagagau ggc 83
//
ID dre-mir-124-3 standard; RNA; DRE; 117 BP.
XX
AC MI0001968;
XX
DE Danio rerio miR-124-3 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628695; mir124-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..52
FT /accession="MIMAT0031960"
FT /product="dre-miR-124-5p"
FT /evidence=not_experimental
FT miRNA 68..89
FT /accession="MIMAT0001819"
FT /product="dre-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 117 BP; 26 A; 28 C; 31 G; 0 T; 32 other;
ggcucugugg gauuucagac ucuggcuuuc cguguucaca gcggaccuug auuuaauguc 60
uuacaauuaa ggcacgcggu gaaugccaag agcggagccu uuuaacauca gcaggcc 117
//
ID dre-mir-124-4 standard; RNA; DRE; 83 BP.
XX
AC MI0001969;
XX
DE Danio rerio miR-124-4 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033631; mirn124-4.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0031961"
FT /product="dre-miR-124-4-5p"
FT /evidence=not_experimental
FT miRNA 52..73
FT /accession="MIMAT0001819"
FT /product="dre-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 83 BP; 22 A; 15 C; 20 G; 0 T; 26 other;
gguuuuugcu cuuuguguuc acaguggacc uugauuuaau uucaauacaa uuaaggcacg 60
cggugaaugc caagagagaa gcc 83
//
ID dre-mir-124-5 standard; RNA; DRE; 129 BP.
XX
AC MI0001970;
XX
DE Danio rerio miR-124-5 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628858; mir124-5.
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..60
FT /accession="MIMAT0031960"
FT /product="dre-miR-124-5p"
FT /evidence=not_experimental
FT miRNA 77..98
FT /accession="MIMAT0001819"
FT /product="dre-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 129 BP; 27 A; 30 C; 33 G; 0 T; 39 other;
ggguuuugcu cgugcguucu uuuugaguuc ucgcucugcg uguucacagc ggaccuugau 60
uuaaugucca uacaauuaag gcacgcggug aaugccaaga gaagaaucuc uccagcaacg 120
aguuugcgc 129
//
ID dre-mir-124-6 standard; RNA; DRE; 113 BP.
XX
AC MI0001971;
XX
DE Danio rerio miR-124-6 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628908; mir124-6.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..49
FT /accession="MIMAT0031962"
FT /product="dre-miR-124-6-5p"
FT /evidence=not_experimental
FT miRNA 66..87
FT /accession="MIMAT0001819"
FT /product="dre-miR-124-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 113 BP; 31 A; 29 C; 31 G; 0 T; 22 other;
ggguggugac acaggcccgc cacucugcgu guucacggcg gaccuugauu uaauauccau 60
acaauuaagg cacgcgguga augccaagag aggggucuua aaacgacaaa ccc 113
//
ID dre-mir-125a-1 standard; RNA; DRE; 83 BP.
XX
AC MI0001972;
XX
DE Danio rerio miR-125a-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628696; mir125a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001820"
FT /product="dre-miR-125a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 83 BP; 18 A; 21 C; 23 G; 0 T; 21 other;
guaugucucu uugucccuga gacccuuaac cugugagguc aaacuagguc acaggugagg 60
uccucaggaa cagggcugca ugc 83
//
ID dre-mir-125a-2 standard; RNA; DRE; 107 BP.
XX
AC MI0001973;
XX
DE Danio rerio miR-125a-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628823; mir125a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..50
FT /accession="MIMAT0001820"
FT /product="dre-miR-125a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 107 BP; 24 A; 25 C; 28 G; 0 T; 30 other;
gaucagucca aaucgaugua ugucuguguc ccugagaccc uuaaccugug augucuucca 60
aggucacagg ugagguccuu gggaacacgg cuguauauga ugacguc 107
//
ID dre-mir-125b-1 standard; RNA; DRE; 145 BP.
XX
AC MI0001975;
XX
DE Danio rerio miR-125b-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628697; mir125b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 46..67
FT /accession="MIMAT0001821"
FT /product="dre-miR-125b-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 86..107
FT /accession="MIMAT0031963"
FT /product="dre-miR-125b-1-3p"
FT /evidence=not_experimental
XX
SQ Sequence 145 BP; 22 A; 35 C; 45 G; 0 T; 43 other;
uucuguugca gguuggcggu uggucugcaa augugccucu cacaaucccu gagacccuaa 60
cuugugacgu uuuccuguua ugugcacggg uuagguucuu gggagcugag aggggugcuc 120
ugucaucagc ccgccggcgu cggaa 145
//
ID dre-mir-125b-2 standard; RNA; DRE; 86 BP.
XX
AC MI0001976;
XX
DE Danio rerio miR-125b-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628698; mir125b-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001821"
FT /product="dre-miR-125b-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 55..75
FT /accession="MIMAT0031964"
FT /product="dre-miR-125b-2-3p"
FT /evidence=not_experimental
XX
SQ Sequence 86 BP; 11 A; 26 C; 25 G; 0 T; 24 other;
gugccccucu ccuucccuga gacccuaacu ugugacguuc ugcuucgaug uccacggguu 60
ggguucucgg gagcugugag aggcac 86
//
ID dre-mir-125b-3 standard; RNA; DRE; 115 BP.
XX
AC MI0001977;
XX
DE Danio rerio miR-125b-3 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628909; mir125b-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..52
FT /accession="MIMAT0001821"
FT /product="dre-miR-125b-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 72..93
FT /accession="MIMAT0031965"
FT /product="dre-miR-125b-3-3p"
FT /evidence=not_experimental
XX
SQ Sequence 115 BP; 24 A; 34 C; 32 G; 0 T; 25 other;
cccgugcggc caccgcugca cuccuccugg ucccugagac ccuaacuugu gagcuuugug 60
ugcuaaaaau cacagguuaa gcucuuggga ccugggcaga gggcaaaagc acugg 115
//
ID dre-mir-125c standard; RNA; DRE; 85 BP.
XX
AC MI0001978;
XX
DE Danio rerio miR-125c stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628859; mir125c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001822"
FT /product="dre-miR-125c-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 53..74
FT /accession="MIMAT0031966"
FT /product="dre-miR-125c-3p"
FT /evidence=not_experimental
XX
SQ Sequence 85 BP; 16 A; 23 C; 25 G; 0 T; 21 other;
gcucuccucc uguucccuga gacccuaacu cgugaggucu uuuuccaaaa ucacggguca 60
ggagcuuggg agacaggugg agggc 85
//
ID dre-mir-126a standard; RNA; DRE; 101 BP.
XX
AC MI0001979;
XX
DE Danio rerio miR-126a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
RN [2]
RX PUBMED; 15919954.
RA Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de
RA Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH;
RT "MicroRNA expression in zebrafish embryonic development";
RL Science. 309:310-311(2005).
XX
DR ENTREZGENE; 100628699; mir126a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..46
FT /accession="MIMAT0003157"
FT /product="dre-miR-126a-5p"
FT /evidence=experimental
FT /experiment="array [2]"
FT miRNA 64..84
FT /accession="MIMAT0001823"
FT /product="dre-miR-126a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 101 BP; 24 A; 23 C; 23 G; 0 T; 31 other;
gagccauuuu aacugcuuca caguccauua uuacuuuugg uacgcgcuag gccagacuca 60
aacucguacc gugaguaaua augcacugug gcaguggguu u 101
//
ID dre-mir-128-1 standard; RNA; DRE; 98 BP.
XX
AC MI0001980;
XX
DE Danio rerio miR-128-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033641; mirn128-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0031967"
FT /product="dre-miR-128-5p"
FT /evidence=not_experimental
FT miRNA 60..81
FT /accession="MIMAT0001824"
FT /product="dre-miR-128-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 98 BP; 19 A; 23 C; 31 G; 0 T; 25 other;
uggaggagga gugcugggag acggggccgu ggcacuguau gagauucaug uaggcuuucu 60
cacagugaac cggucucuuu uuccagcccu cacugaca 98
//
ID dre-mir-128-2 standard; RNA; DRE; 123 BP.
XX
AC MI0001981;
XX
DE Danio rerio miR-128-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628954; mir128-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 69..90
FT /accession="MIMAT0001824"
FT /product="dre-miR-128-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 123 BP; 25 A; 31 C; 30 G; 0 T; 37 other;
ucugcucaug ggucugucag uaguaggaca gggggccguu ucuacuguca gagaugcugc 60
cacucgucuc acagugaacc ggucucuuuu ccugcuauuc acuucugcaa uaauaugagc 120
aga 123
//
ID dre-mir-129-2 standard; RNA; DRE; 87 BP.
XX
AC MI0001982;
XX
DE Danio rerio miR-129-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
RN [2]
RX PUBMED; 15919954.
RA Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de
RA Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH;
RT "MicroRNA expression in zebrafish embryonic development";
RL Science. 309:310-311(2005).
XX
DR ENTREZGENE; 100628700; mir129-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001825"
FT /product="dre-miR-129-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 55..76
FT /accession="MIMAT0003158"
FT /product="dre-miR-129-3p"
FT /evidence=experimental
FT /experiment="array [2]"
XX
SQ Sequence 87 BP; 18 A; 22 C; 21 G; 0 T; 26 other;
gucuuucacg aaucuuuuug cggucugggc uugcuguucu caacuaucaa ugggaagccc 60
uuaccccaaa aagcauuugc ggagggc 87
//
ID dre-mir-129-1 standard; RNA; DRE; 90 BP.
XX
AC MI0001983;
XX
DE Danio rerio miR-129-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628701; mir129-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001825"
FT /product="dre-miR-129-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 57..77
FT /accession="MIMAT0031968"
FT /product="dre-miR-129-1-3p"
FT /evidence=not_experimental
XX
SQ Sequence 90 BP; 18 A; 24 C; 22 G; 0 T; 26 other;
guccuuuuca ggucuuuuug cggucugggc uugcuguucc uugaaccagu agccaggaag 60
cccuuacccc aaaaaguauc ugcagaggac 90
//
ID dre-mir-130a standard; RNA; DRE; 85 BP.
XX
AC MI0001984;
XX
DE Danio rerio miR-130a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033645; mirn130a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..75
FT /accession="MIMAT0001826"
FT /product="dre-miR-130a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 85 BP; 23 A; 17 C; 19 G; 0 T; 26 other;
ugucugucca gugccccuuu uauauuguac uacugauaac ccaguuauua aagcagugca 60
auguuaaaag ggcauuggcc aggga 85
//
ID dre-mir-130b standard; RNA; DRE; 84 BP.
XX
AC MI0001986;
XX
DE Danio rerio miR-130b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628702; mir130b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0001827"
FT /product="dre-miR-130b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 84 BP; 20 A; 22 C; 21 G; 0 T; 21 other;
cuguugccug acacucuuuc ccuguugcac uacuguggga gcugcagcaa agcagugcaa 60
uaaugaaagg gcaucagucc acug 84
//
ID dre-mir-130c-1 standard; RNA; DRE; 141 BP.
XX
AC MI0001987;
XX
DE Danio rerio miR-130c-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628860; mir130c-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 43..64
FT /accession="MIMAT0031969"
FT /product="dre-miR-130c-5p"
FT /evidence=not_experimental
FT miRNA 80..101
FT /accession="MIMAT0001828"
FT /product="dre-miR-130c-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 141 BP; 33 A; 33 C; 32 G; 0 T; 43 other;
gggagagguc uguacgguga uauugaccau guuuugucca uugcccuuuu ucuguuguac 60
uacuggccaa ucagaagagc agugcaauau uaaaagggca uuggcugaua gaacagaguc 120
cuucaccucu cacccucucc u 141
//
ID dre-mir-130c-2 standard; RNA; DRE; 81 BP.
XX
AC MI0001988;
XX
DE Danio rerio miR-130c-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628824; mir130c-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0031969"
FT /product="dre-miR-130c-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001828"
FT /product="dre-miR-130c-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 81 BP; 20 A; 15 C; 21 G; 0 T; 25 other;
uuguugacca gggcccuuuu ucuguuguac uacugugcag ucagaugagc agugcaauau 60
uaaaagggca uuggcugaca a 81
//
ID dre-mir-132-1 standard; RNA; DRE; 85 BP.
XX
AC MI0001989;
XX
DE Danio rerio miR-132-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628703; mir132-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0003403"
FT /product="dre-miR-132-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 54..75
FT /accession="MIMAT0001829"
FT /product="dre-miR-132-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 85 BP; 20 A; 17 C; 24 G; 0 T; 24 other;
gucuccaugg cgaccguggc auuagauugu uacuguagga acagaauuuu ugguaacagu 60
cuacagccau ggucgcuagu gggca 85
//
ID dre-mir-132-2 standard; RNA; DRE; 119 BP.
XX
AC MI0001991;
XX
DE Danio rerio miR-132-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628704; mir132-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 66..87
FT /accession="MIMAT0001829"
FT /product="dre-miR-132-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 119 BP; 21 A; 31 C; 34 G; 0 T; 33 other;
ucccuuccuc ugcugucucc augcugaccg uggcuuuaga uuguuacugu agcguuggca 60
cgugguaaca gucuacagcc auggucgcca aggggcaggu guuacagcga cuacuggga 119
//
ID dre-mir-133a-2 standard; RNA; DRE; 84 BP.
XX
AC MI0001992;
XX
DE Danio rerio miR-133a-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628911; mir133a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0031970"
FT /product="dre-miR-133a-2-5p"
FT /evidence=not_experimental
FT miRNA 51..72
FT /accession="MIMAT0001830"
FT /product="dre-miR-133a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 84 BP; 23 A; 17 C; 17 G; 0 T; 27 other;
aaugcuuugc uaaagcuggu aaaauggaac caaaucaacu guuuuaugga uuuggucccc 60
uucaaccagc uguagcugug cauu 84
//
ID dre-mir-133a-1 standard; RNA; DRE; 99 BP.
XX
AC MI0001993;
XX
DE Danio rerio miR-133a-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628705; mir133a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0003404"
FT /product="dre-miR-133a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 62..83
FT /accession="MIMAT0001830"
FT /product="dre-miR-133a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 99 BP; 29 A; 25 C; 17 G; 0 T; 28 other;
caucaaacca caaugcuuug cuaaagcugg uaaaauggaa ccaaaucacc ucuucaaugg 60
auuugguccc cuucaaccag cuguagcuau gcuuugaug 99
//
ID dre-mir-133b standard; RNA; DRE; 84 BP.
XX
AC MI0001994;
XX
DE Danio rerio miR-133b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628706; mir133b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0003405"
FT /product="dre-miR-133b-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 53..74
FT /accession="MIMAT0001831"
FT /product="dre-miR-133b-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 84 BP; 14 A; 23 C; 24 G; 0 T; 23 other;
cacgccuugc uguggcuggu caaauggaac caagucaggu guuucugcga gguuuggucc 60
ccuucaacca gcuacugcgu cgug 84
//
ID dre-mir-133c standard; RNA; DRE; 91 BP.
XX
AC MI0001995;
XX
DE Danio rerio miR-133c stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628885; mir133c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0031971"
FT /product="dre-miR-133c-5p"
FT /evidence=not_experimental
FT miRNA 55..76
FT /accession="MIMAT0001832"
FT /product="dre-miR-133c-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 91 BP; 21 A; 21 C; 26 G; 0 T; 23 other;
gaaacacggc uuaguugcug guaaaacgga accaagucgg guguuugcga gagguuuggu 60
cccuuucaac cagcuacugc gccgugaauu c 91
//
ID dre-mir-135c-1 standard; RNA; DRE; 80 BP.
XX
AC MI0001996;
XX
DE Danio rerio miR-135c-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628861; mir135c-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001833"
FT /product="dre-miR-135c"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 80 BP; 14 A; 15 C; 19 G; 0 T; 32 other;
ugcuguguuu uauggcuuuc uauuccuaug ugauuuucuu cugccguguc acauaggguu 60
caaagccauu ggguacagag 80
//
ID dre-mir-135c-2 standard; RNA; DRE; 127 BP.
XX
AC MI0001997;
XX
DE Danio rerio miR-135c-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628912; mir135c-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 36..57
FT /accession="MIMAT0001833"
FT /product="dre-miR-135c"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 127 BP; 35 A; 21 C; 28 G; 0 T; 43 other;
ugcagucuaa agcaacucaa aacacuacug ugcuuuaugg cuuucuauuc cuaugugauu 60
uugauaugau guaucaugua ggguucaaag ccauuaggua cagaguggcu uaucagcagu 120
ggaugua 127
//
ID dre-mir-137-1 standard; RNA; DRE; 85 BP.
XX
AC MI0002000;
XX
DE Danio rerio miR-137-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628708; mir137-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..38
FT /accession="MIMAT0031972"
FT /product="dre-miR-137-5p"
FT /evidence=not_experimental
FT miRNA 51..72
FT /accession="MIMAT0001834"
FT /product="dre-miR-137-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 85 BP; 16 A; 14 C; 27 G; 0 T; 28 other;
ggcucucuuc ggugacgggu auucuugggu ggauaauacg gcucucguug uuauugcuua 60
agaauacgcg uaguugagga gaguc 85
//
ID dre-mir-137-2 standard; RNA; DRE; 128 BP.
XX
AC MI0002001;
XX
DE Danio rerio miR-137-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628709; mir137-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..62
FT /accession="MIMAT0031972"
FT /product="dre-miR-137-5p"
FT /evidence=not_experimental
FT miRNA 75..96
FT /accession="MIMAT0001834"
FT /product="dre-miR-137-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 128 BP; 25 A; 24 C; 39 G; 0 T; 40 other;
guucuguugu uucccucuau aaaggacucu cuucggugac ggguauucuu ggguggauaa 60
uacggcucuc guuguuauug cuuaagaaua cgcguagucg aggagaguca ugucggcggc 120
gagagagc 128
//
ID dre-mir-138-1 standard; RNA; DRE; 87 BP.
XX
AC MI0002002;
XX
DE Danio rerio miR-138-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628825; mir138.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0001835"
FT /product="dre-miR-138-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 58..78
FT /accession="MIMAT0031973"
FT /product="dre-miR-138-3p"
FT /evidence=not_experimental
XX
SQ Sequence 87 BP; 20 A; 24 C; 24 G; 0 T; 19 other;
ugugugcugc agcugguguu gugaaucagg ccgaugucac acgucagcga uaacccggcu 60
auuucacaac accagggugg caccaca 87
//
ID dre-mir-140 standard; RNA; DRE; 105 BP.
XX
AC MI0002003;
XX
DE Danio rerio miR-140 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
RN [2]
RX PUBMED; 15919954.
RA Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de
RA Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH;
RT "MicroRNA expression in zebrafish embryonic development";
RL Science. 309:310-311(2005).
XX
DR ENTREZGENE; 100033662; mirn140.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..44
FT /accession="MIMAT0001836"
FT /product="dre-miR-140-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 62..84
FT /accession="MIMAT0003159"
FT /product="dre-miR-140-3p"
FT /evidence=experimental
FT /experiment="array [2], in-situ [2]"
XX
SQ Sequence 105 BP; 16 A; 24 C; 32 G; 0 T; 33 other;
guguuugucu ccuguguccc gucagugguu uuacccuaug guagguuacg ucaugcuguu 60
cuaccacagg guagaaccac ggacgggaug ucuggaggug ucugc 105
//
ID dre-mir-141 standard; RNA; DRE; 83 BP.
XX
AC MI0002004;
XX
DE Danio rerio miR-141 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033663; mirn141.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0031974"
FT /product="dre-miR-141-5p"
FT /evidence=not_experimental
FT miRNA 51..72
FT /accession="MIMAT0001837"
FT /product="dre-miR-141-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 83 BP; 16 A; 20 C; 20 G; 0 T; 27 other;
gucucuaggg uacaucuuac cugacagugc uuggcuguuc acugauguuc uaacacuguc 60
ugguaacgau gcacucuggu gac 83
//
ID dre-mir-142a standard; RNA; DRE; 91 BP.
XX
AC MI0002005;
XX
DE Danio rerio miR-142a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
RN [2]
RX PUBMED; 15919954.
RA Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de
RA Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH;
RT "MicroRNA expression in zebrafish embryonic development";
RL Science. 309:310-311(2005).
XX
DR ENTREZGENE; 100628913; mir142a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..38
FT /accession="MIMAT0001838"
FT /product="dre-miR-142a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 55..77
FT /accession="MIMAT0003160"
FT /product="dre-miR-142a-3p"
FT /evidence=experimental
FT /experiment="array [2], in-situ [2]"
XX
SQ Sequence 91 BP; 25 A; 21 C; 19 G; 0 T; 26 other;
cguacagugc agucauccau aaaguagaaa gcacuacuaa accccucgcc acaguguagu 60
guuuccuacu uuauggauga guguacuguu g 91
//
ID dre-mir-142b standard; RNA; DRE; 86 BP.
XX
AC MI0002006;
XX
DE Danio rerio miR-142b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628710; mir142b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0001839"
FT /product="dre-miR-142b-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 86 BP; 25 A; 18 C; 16 G; 0 T; 27 other;
acagugcagu cacucauaaa guagacagca cuacuaaacu ucucuacaca guguaguguu 60
uccuacuuua uggaugagug uacugu 86
//
ID dre-mir-143 standard; RNA; DRE; 99 BP.
XX
AC MI0002007;
XX
DE Danio rerio miR-143 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628862; mir143-1.
XX
CC The cloned mature miR-143 sequence always appears to be 22nt in length,
CC modified by the addition of a 3' U residue not found in the genomic
CC sequence [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..77
FT /accession="MIMAT0001840"
FT /product="dre-miR-143"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 99 BP; 20 A; 26 C; 31 G; 0 T; 22 other;
gaucuacagu cgucuggccc gcggugcagu gcugcaucuc uggucaacug ggagucugag 60
augaagcacu guagcucggg aggacaacac ugucagcuc 99
//
ID dre-mir-144 standard; RNA; DRE; 89 BP.
XX
AC MI0002009;
XX
DE Danio rerio miR-144 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628712; mir144.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0031975"
FT /product="dre-miR-144-5p"
FT /evidence=not_experimental
FT miRNA 51..70
FT /accession="MIMAT0001841"
FT /product="dre-miR-144-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 89 BP; 27 A; 17 C; 20 G; 0 T; 25 other;
gcucucuaga caggauauca ucguauacug uaaguucauu auugagacac uacaguauag 60
augauguacu auccaggggg ucaacgagc 89
//
ID dre-mir-145 standard; RNA; DRE; 113 BP.
XX
AC MI0002010;
XX
DE Danio rerio miR-145 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033669; mir145.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..51
FT /accession="MIMAT0001842"
FT /product="dre-miR-145-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 69..90
FT /accession="MIMAT0031976"
FT /product="dre-miR-145-3p"
FT /evidence=not_experimental
XX
SQ Sequence 113 BP; 21 A; 28 C; 31 G; 0 T; 33 other;
ucagucuuca ucauuuccuc auccccgggg uccaguuuuc ccaggaaucc cuugggcaau 60
cgaaaggggg auuccuggaa auacuguucu ugggguuggg gcuggacuac uga 113
//
ID dre-mir-146a standard; RNA; DRE; 114 BP.
XX
AC MI0002012;
XX
DE Danio rerio miR-146a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033670; mir146a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..47
FT /accession="MIMAT0001843"
FT /product="dre-miR-146a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 114 BP; 27 A; 21 C; 23 G; 0 T; 43 other;
gaguuuguuu ugagcacuuu ucccugagaa cugaauucca uagauggugu ucaugaaaag 60
uucaucuaug ggcucaguuc uucuggcaau cuguuuaaug ucugcuacaa auuc 114
//
ID dre-mir-146b standard; RNA; DRE; 80 BP.
XX
AC MI0002013;
XX
DE Danio rerio miR-146b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628713; mir146b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0001844"
FT /product="dre-miR-146b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 80 BP; 16 A; 16 C; 20 G; 0 T; 28 other;
gcucuuggcu uugagaacug aauuccaagg gugucugcuu uauauucagc ccacggaguu 60
caguucuuaa guuuggaugc 80
//
ID dre-mir-148 standard; RNA; DRE; 79 BP.
XX
AC MI0002015;
XX
DE Danio rerio miR-148 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628863; mir148.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..70
FT /accession="MIMAT0001845"
FT /product="dre-miR-148"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 79 BP; 19 A; 15 C; 17 G; 0 T; 28 other;
cuuuccaagu aaaguucugu gauacacucc gacucugaau guuugcaguc agugcauuac 60
agaacuuugu uuugggagu 79
//
ID dre-mir-150 standard; RNA; DRE; 79 BP.
XX
AC MI0002016;
XX
DE Danio rerio miR-150 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628715; mir150.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001846"
FT /product="dre-miR-150"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 79 BP; 13 A; 19 C; 26 G; 0 T; 21 other;
caucuccguc ucucccaauc cuuguaccag ugucugauuu acagaugacg cuggacgggg 60
uuuggggggg gcugaggga 79
//
ID dre-mir-152 standard; RNA; DRE; 80 BP.
XX
AC MI0002017;
XX
DE Danio rerio miR-152 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628955; mir152.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..75
FT /accession="MIMAT0001847"
FT /product="dre-miR-152"
FT /evidence=not_experimental
FT /similarity="MI0000174"
XX
SQ Sequence 80 BP; 18 A; 19 C; 20 G; 0 T; 23 other;
cuguucaccu ggcucaaguu cugugauaca cucagacuuu gaaucagugg uagucagugc 60
augacagaac uuuggcccgg 80
//
ID dre-mir-153b standard; RNA; DRE; 148 BP.
XX
AC MI0002019;
XX
DE Danio rerio miR-153b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628915; mir153b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 43..64
FT /accession="MIMAT0031977"
FT /product="dre-miR-153b-5p"
FT /evidence=not_experimental
FT miRNA 81..102
FT /accession="MIMAT0001848"
FT /product="dre-miR-153b-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 148 BP; 36 A; 32 C; 43 G; 0 T; 37 other;
gagcgaugga gcgcgguagc gagguauugc acagcugucu gugucauuuu ugugguuugc 60
agcuaguagu cugguuccag uugcauaguc acaaaaauga gcacagacag augugacugc 120
agcaacgcug augaaacgcu ccaucgcc 148
//
ID dre-mir-153a standard; RNA; DRE; 81 BP.
XX
AC MI0002021;
XX
DE Danio rerio miR-153a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628716; mir153a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031978"
FT /product="dre-miR-153a-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001849"
FT /product="dre-miR-153a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 81 BP; 21 A; 13 C; 20 G; 0 T; 27 other;
gguugccagu gucauuuuug ugauguugca gcuaguuaua ugagcccagu ugcauaguca 60
caaaagugau cauuggaaac u 81
//
ID dre-mir-153c standard; RNA; DRE; 151 BP.
XX
AC MI0002022;
XX
DE Danio rerio miR-153c stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628717; mir153c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 43..64
FT /accession="MIMAT0031979"
FT /product="dre-miR-153c-5p"
FT /evidence=not_experimental
FT miRNA 81..102
FT /accession="MIMAT0001850"
FT /product="dre-miR-153c-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 151 BP; 35 A; 32 C; 43 G; 0 T; 41 other;
gauggagauc aguagguccc uggacguagc acaccuccca gugucauuuu ugugauuugc 60
agcuaguagu cuggguccag uugcauaguc acaaaaauga ucauugguag gugugagugc 120
agcaggagug aggcuuaccg gauccuccau c 151
//
ID dre-mir-155 standard; RNA; DRE; 78 BP.
XX
AC MI0002023;
XX
DE Danio rerio miR-155 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628916; mir155.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001851"
FT /product="dre-miR-155"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 78 BP; 18 A; 12 C; 21 G; 0 T; 27 other;
uggugcaggu uuaaugcuaa ucgugauagg gguuuagugc ugaugaacac cuaugcuguu 60
agcauuaauc uugcgcua 78
//
ID dre-mir-181c standard; RNA; DRE; 78 BP.
XX
AC MI0002024;
XX
DE Danio rerio miR-181c stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628718; mir181c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0001852"
FT /product="dre-miR-181c-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 48..69
FT /accession="MIMAT0031980"
FT /product="dre-miR-181c-3p"
FT /evidence=not_experimental
XX
SQ Sequence 78 BP; 15 A; 19 C; 20 G; 0 T; 24 other;
ggguccugau ucacauucau ugcugucggu ggguuuuauc ucuucgacuc gccggacaau 60
gaaugagaac uacggcuc 78
//
ID dre-mir-184-1 standard; RNA; DRE; 87 BP.
XX
AC MI0002026;
XX
DE Danio rerio miR-184 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628827; mir184.
XX
FH Key Location/Qualifiers
FH
FT miRNA 55..76
FT /accession="MIMAT0001853"
FT /product="dre-miR-184"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 87 BP; 20 A; 23 C; 19 G; 0 T; 25 other;
gucgaacacg ucuccuuauc acuuuuccag cccagcuauc cauuuaguau ucguuggacg 60
gagaacugau aagggcaugu gcccgau 87
//
ID dre-mir-190a standard; RNA; DRE; 126 BP.
XX
AC MI0002027;
XX
DE Danio rerio miR-190 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628864; mir190.
XX
FH Key Location/Qualifiers
FH
FT miRNA 46..67
FT /accession="MIMAT0001854"
FT /product="dre-miR-190a"
FT /evidence=not_experimental
FT /similarity="MI0000232"
XX
SQ Sequence 126 BP; 27 A; 26 C; 27 G; 0 T; 46 other;
ucuggaggug agguagaccu ggaagccuuu cugcaggccu cuguuugaua uguuugauau 60
auuagguugu uauucugucc aacuauauau caaacauauu ccuacagugu ccugcucugu 120
cuccag 126
//
ID dre-mir-462 standard; RNA; DRE; 102 BP.
XX
AC MI0002028;
XX
DE Danio rerio miR-462 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628719; mir462.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001855"
FT /product="dre-miR-462"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 102 BP; 19 A; 22 C; 28 G; 0 T; 33 other;
gucuggaugg uaacggaacc cauaaugcag cuguuugguu gauugauuga cagcugucug 60
uggauuccgu gccccuccuu ucuugcagga gcucauugag au 102
//
ID dre-mir-193a-1 standard; RNA; DRE; 99 BP.
XX
AC MI0002029;
XX
DE Danio rerio miR-193a-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628720; mir193a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..42
FT /accession="MIMAT0031981"
FT /product="dre-miR-193a-5p"
FT /evidence=not_experimental
FT miRNA 61..82
FT /accession="MIMAT0001856"
FT /product="dre-miR-193a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 99 BP; 23 A; 18 C; 25 G; 0 T; 33 other;
gacauuaaug uguuagaggu ugggucuuug cgggcaaggu gaguaguuaa auuuacucuc 60
aacuggccua caaaguccca guuucuggcu cauguuauc 99
//
ID dre-mir-193a-2 standard; RNA; DRE; 98 BP.
XX
AC MI0002030;
XX
DE Danio rerio miR-193a-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628917; mir193a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0031981"
FT /product="dre-miR-193a-5p"
FT /evidence=not_experimental
FT miRNA 55..76
FT /accession="MIMAT0001856"
FT /product="dre-miR-193a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 98 BP; 18 A; 24 C; 27 G; 0 T; 29 other;
gagagugugu cagaggcugg gucuuugcgg gcaaggugag uuuuccuuuc auucaacugg 60
ccuacaaagu cccaguuuuc ggcccaugug accaucuc 98
//
ID dre-mir-193b standard; RNA; DRE; 85 BP.
XX
AC MI0002032;
XX
DE Danio rerio miR-193b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628828; mir193b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0031982"
FT /product="dre-miR-193b-5p"
FT /evidence=not_experimental
FT miRNA 52..73
FT /accession="MIMAT0001857"
FT /product="dre-miR-193b-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 85 BP; 17 A; 21 C; 25 G; 0 T; 22 other;
gugauuucag ugacgggacu uugggggcga gaugaguauu gaucucuauc caacuggccc 60
gcaaaguccc gcuucuggga cucac 85
//
ID dre-mir-194a standard; RNA; DRE; 84 BP.
XX
AC MI0002033;
XX
DE Danio rerio miR-194a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628722; mir194a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0001858"
FT /product="dre-miR-194a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 84 BP; 16 A; 18 C; 25 G; 0 T; 25 other;
uggugcugac ugcuuguaac agcaacucca uguggaaggu uugugucuuc caguggagcu 60
gcuguugcgu gcagauaguc acca 84
//
ID dre-mir-194b standard; RNA; DRE; 77 BP.
XX
AC MI0002034;
XX
DE Danio rerio miR-194b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033689; mir194b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001859"
FT /product="dre-miR-194b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 77 BP; 18 A; 18 C; 23 G; 0 T; 18 other;
gcucgcuggg uguaacagcc gcuccaugug gaaaaugcau ucaagugccc guggauaagc 60
uguuaccugc agagagu 77
//
ID dre-mir-196a-2 standard; RNA; DRE; 76 BP.
XX
AC MI0002035;
XX
DE Danio rerio miR-196a-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033690; mirn196a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001276"
FT /product="dre-miR-196a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 47..68
FT /accession="MIMAT0031983"
FT /product="dre-miR-196a-3p"
FT /evidence=not_experimental
XX
SQ Sequence 76 BP; 18 A; 14 C; 17 G; 0 T; 27 other;
ucgagugguu uagguaguuu cauguuguug ggauuacauu caaacucugc aacgugaaac 60
ugucuuaauu gcccca 76
//
ID dre-mir-196b standard; RNA; DRE; 79 BP.
XX
AC MI0002036;
XX
DE Danio rerio miR-196b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628865; mir196b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001860"
FT /product="dre-miR-196b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 79 BP; 18 A; 14 C; 20 G; 0 T; 27 other;
gucugugauu uagguaguuu caaguuguug ggcuggacgu uuaauuucac aggaaccuga 60
aacugccuga auugcucca 79
//
ID dre-mir-200a standard; RNA; DRE; 86 BP.
XX
AC MI0002037;
XX
DE Danio rerio miR-200a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628918; mir200a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0031984"
FT /product="dre-miR-200a-5p"
FT /evidence=not_experimental
FT miRNA 52..73
FT /accession="MIMAT0001861"
FT /product="dre-miR-200a-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 86 BP; 18 A; 19 C; 22 G; 0 T; 27 other;
ggcacuuagc agccaucuua ccggacagug cuggacugua uaacuguuuu cuaacacugu 60
cugguaacga uguuuguugg gugacc 86
//
ID dre-mir-200b standard; RNA; DRE; 82 BP.
XX
AC MI0002038;
XX
DE Danio rerio miR-200b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628724; mir200b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0031985"
FT /product="dre-miR-200b-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001862"
FT /product="dre-miR-200b-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 82 BP; 17 A; 17 C; 18 G; 0 T; 30 other;
gguagucguc uccaucuuac gaggcagcau uggauuucau uacuuuuucu aauacugccu 60
gguaaugaug augauugcug cc 82
//
ID dre-mir-200c standard; RNA; DRE; 85 BP.
XX
AC MI0002039;
XX
DE Danio rerio miR-200c stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628829; mir200c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0031986"
FT /product="dre-miR-200c-5p"
FT /evidence=not_experimental
FT miRNA 51..72
FT /accession="MIMAT0001863"
FT /product="dre-miR-200c-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 85 BP; 19 A; 17 C; 19 G; 0 T; 30 other;
uggaugccug gcuccaucuu acaaggcagu uuuggauguu auaucuucuc uaauacugcc 60
ugguaaugau gcagaugguc aucua 85
//
ID dre-mir-202 standard; RNA; DRE; 76 BP.
XX
AC MI0002040;
XX
DE Danio rerio miR-202 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628725; mir202.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0003406"
FT /product="dre-miR-202-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 47..68
FT /accession="MIMAT0001864"
FT /product="dre-miR-202-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 76 BP; 17 A; 15 C; 20 G; 0 T; 24 other;
cuguuccuuu uuccuaugca uauaccucuu ugacaugcug cuuuaaagag gcauagggca 60
ugggaaaaug gggcgg 76
//
ID dre-mir-203b standard; RNA; DRE; 85 BP.
XX
AC MI0002041;
XX
DE Danio rerio miR-203b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628726; mir203b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0003407"
FT /product="dre-miR-203b-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 51..72
FT /accession="MIMAT0001865"
FT /product="dre-miR-203b-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 85 BP; 21 A; 17 C; 20 G; 0 T; 27 other;
uccucuuugg ccgagugguu cucaacaguu caacaguucu uuugaugauu gugaaauguu 60
caggaccacu ugaucagacg aagga 85
//
ID dre-mir-204-2 standard; RNA; DRE; 124 BP.
XX
AC MI0002042;
XX
DE Danio rerio miR-204-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628919; mir204-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 37..58
FT /accession="MIMAT0001279"
FT /product="dre-miR-204-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 74..94
FT /accession="MIMAT0031987"
FT /product="dre-miR-204-2-3p"
FT /evidence=not_experimental
XX
SQ Sequence 124 BP; 24 A; 30 C; 33 G; 0 T; 37 other;
guguugcucu agugaccagu uugugaccuc cuggguuucc cuuugucauc cuaugccugc 60
aguuccugau gaggcuggga cagcaaaggg agguucagau gucgaccugu acuacaguca 120
auac 124
//
ID dre-mir-206-1 standard; RNA; DRE; 99 BP.
XX
AC MI0002045;
XX
DE Danio rerio miR-206-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628866; mir206-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..43
FT /accession="MIMAT0031988"
FT /product="dre-miR-206-5p"
FT /evidence=not_experimental
FT miRNA 59..80
FT /accession="MIMAT0001866"
FT /product="dre-miR-206-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 99 BP; 25 A; 14 C; 26 G; 0 T; 34 other;
gaauguugcc ucuugugaag acaugcuucc uuauaugccc auauuaaugc ucaaguuaug 60
gaauguaagg aagugugugg uuucaggggg aaauuuguc 99
//
ID dre-mir-206-2 standard; RNA; DRE; 109 BP.
XX
AC MI0002046;
XX
DE Danio rerio miR-206-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628727; mir206-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 64..85
FT /accession="MIMAT0001866"
FT /product="dre-miR-206-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 109 BP; 29 A; 20 C; 23 G; 0 T; 37 other;
gaguuggcug uugcuuauug agacgacaua cuuccuuaua uccccauauu cagaauuaau 60
cuauggaaug uaaggaagug uguggcuuca gugagaucuc aucaucauc 109
//
ID dre-mir-216b standard; RNA; DRE; 77 BP.
XX
AC MI0002048;
XX
DE Danio rerio miR-216b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628728; mir216b-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001867"
FT /product="dre-miR-216b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 77 BP; 19 A; 15 C; 21 G; 0 T; 22 other;
acugacuggg uaaucucugc aggcaacugu gaugugauua cagucucaca uugaccugaa 60
gagguugagc agucugu 77
//
ID dre-mir-218a-1 standard; RNA; DRE; 83 BP.
XX
AC MI0002051;
XX
DE Danio rerio miR-218a-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628730; mir218a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001868"
FT /product="dre-miR-218a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 83 BP; 16 A; 29 C; 19 G; 0 T; 19 other;
cagcugucuc uugugcuuga ucuaaccaug ugccgccgcc uacacaagcc ucacaugguu 60
ccgucaagca ccagggaccg cug 83
//
ID dre-mir-218a-2 standard; RNA; DRE; 88 BP.
XX
AC MI0002052;
XX
DE Danio rerio miR-218a-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628867; mir218a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0001868"
FT /product="dre-miR-218a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 88 BP; 18 A; 19 C; 23 G; 0 T; 28 other;
gcgggguuuu ccuuugugcu ugaucuaacc augugguugc agacucagac uaauacaugg 60
uucugucaag caccauggaa ggucuugc 88
//
ID dre-mir-218b standard; RNA; DRE; 76 BP.
XX
AC MI0002053;
XX
DE Danio rerio miR-218b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628831; mir218b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001869"
FT /product="dre-miR-218b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 76 BP; 15 A; 20 C; 17 G; 0 T; 24 other;
caggacacca uugugcuuga ucuaaccaug caguucccuu ucuguccaug guugugccaa 60
gcacuuugga gacuug 76
//
ID dre-mir-219-3 standard; RNA; DRE; 150 BP.
XX
AC MI0002054;
XX
DE Danio rerio miR-219-3 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628731; mir219-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..70
FT /accession="MIMAT0001286"
FT /product="dre-miR-219-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 87..109
FT /accession="MIMAT0031989"
FT /product="dre-miR-219-3p"
FT /evidence=not_experimental
XX
SQ Sequence 150 BP; 32 A; 32 C; 38 G; 0 T; 48 other;
cuucucuuuu aaguucaucu gucugguuug auacugacgg ucaggugcug auuguccaaa 60
cgcaauucuu gugcuugugu gaaacaggag uuguggaugg acaucacgcu ccugucuggu 120
ccucacaucu acaggauggg ccaaguaaag 150
//
ID dre-mir-301a standard; RNA; DRE; 86 BP.
XX
AC MI0002059;
XX
DE Danio rerio miR-301a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628921; mir301a-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..72
FT /accession="MIMAT0001870"
FT /product="dre-miR-301a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 86 BP; 22 A; 18 C; 22 G; 0 T; 24 other;
gcuguuaaca ggugcucuga cuucauugca cuacuguauu ggacagcuag cagugcaaua 60
guauugucaa agcgucugag agcagc 86
//
ID dre-mir-301b standard; RNA; DRE; 81 BP.
XX
AC MI0002061;
XX
DE Danio rerio miR-301b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628733; mir301b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0031990"
FT /product="dre-miR-301b-5p"
FT /evidence=not_experimental
FT miRNA 49..70
FT /accession="MIMAT0001871"
FT /product="dre-miR-301b-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 81 BP; 20 A; 16 C; 17 G; 0 T; 28 other;
aaggucuguu gcuuugacga uguugcacua cugaaccauc uaaucaagca gugcaauagu 60
auugucauug cauucggcuu u 81
//
ID dre-mir-301c standard; RNA; DRE; 83 BP.
XX
AC MI0002062;
XX
DE Danio rerio miR-301c stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628734; mir301c.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..32
FT /accession="MIMAT0031991"
FT /product="dre-miR-301c-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001872"
FT /product="dre-miR-301c-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 83 BP; 19 A; 20 C; 17 G; 0 T; 27 other;
ugaggucagc ugcucugacg auguugcacu acuguaccau ccauucuagc agugcaauag 60
uauugucaua gcauuuagcc ucu 83
//
ID dre-mir-338-1 standard; RNA; DRE; 85 BP.
XX
AC MI0002063;
XX
DE Danio rerio miR-338-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628956; mir338-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..73
FT /accession="MIMAT0001873"
FT /product="dre-miR-338"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 85 BP; 13 A; 25 C; 18 G; 0 T; 29 other;
gguuucuccc ugcaacaauc uccugaugcu gccugagugu uuuucuucca cuccagcauc 60
agugauuuug uugccggagg ucacc 85
//
ID dre-mir-338-2 standard; RNA; DRE; 124 BP.
XX
AC MI0002064;
XX
DE Danio rerio miR-338-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628922; mir338-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 71..92
FT /accession="MIMAT0001873"
FT /product="dre-miR-338"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 124 BP; 26 A; 20 C; 37 G; 0 T; 41 other;
gugugugugu guguuucugg ugccugcuga gaacaauauc cugaugcuga augagugugu 60
ugaaggaaac uccagcauca gugauuuugu ugccagagga gcacuuuggg cauccugugu 120
auau 124
//
ID dre-mir-363 standard; RNA; DRE; 127 BP.
XX
AC MI0002067;
XX
DE Danio rerio miR-363 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628736; mir363.
XX
FH Key Location/Qualifiers
FH
FT miRNA 29..51
FT /accession="MIMAT0031992"
FT /product="dre-miR-363-5p"
FT /evidence=not_experimental
FT miRNA 78..99
FT /accession="MIMAT0001874"
FT /product="dre-miR-363-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 127 BP; 34 A; 22 C; 25 G; 0 T; 46 other;
uaaaugcaaa uauuugucuu gcuguuuucg gguggaugac ucugcaauuu uauuagugau 60
ggaaaaacuu caauaaaaau ugcacgguau ccaucuguaa uccgcuggau uccauuaccu 120
gcguuug 127
//
ID dre-mir-365-1 standard; RNA; DRE; 89 BP.
XX
AC MI0002068;
XX
DE Danio rerio miR-365-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628737; mir365-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 55..76
FT /accession="MIMAT0001875"
FT /product="dre-miR-365"
FT /evidence=not_experimental
FT /similarity="MI0000767"
XX
SQ Sequence 89 BP; 19 A; 21 C; 22 G; 0 T; 27 other;
ccgcagggag aaugaggggc uuuugggggc acuuguguuu caguuucacc aucauaaugc 60
cccuaaaaau ccuuauugcu cuugcacug 89
//
ID dre-mir-365-2 standard; RNA; DRE; 98 BP.
XX
AC MI0002069;
XX
DE Danio rerio miR-365-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628832; mir365-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 58..79
FT /accession="MIMAT0001875"
FT /product="dre-miR-365"
FT /evidence=not_experimental
FT /similarity="MI0000768"
XX
SQ Sequence 98 BP; 29 A; 20 C; 20 G; 0 T; 29 other;
aggcagcaag aaaaaugagg gacuuuuagg ggcagcugug uuuuauuaac ccagucauaa 60
ugccccuaaa aauccuuauu gcucuugcaa uuuucagc 98
//
ID dre-mir-365-3 standard; RNA; DRE; 99 BP.
XX
AC MI0002070;
XX
DE Danio rerio miR-365-3 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628923; mir365-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 59..80
FT /accession="MIMAT0001875"
FT /product="dre-miR-365"
FT /evidence=not_experimental
FT /similarity="MI0000768"
XX
SQ Sequence 99 BP; 29 A; 22 C; 22 G; 0 T; 26 other;
aagucagcaa gaaaagugag ggacuuuuag gggcagcugu guuauacuga cccagucaua 60
augccccuaa aaauccuuau ugcucuugca gugcucaac 99
//
ID dre-mir-375-1 standard; RNA; DRE; 80 BP.
XX
AC MI0002072;
XX
DE Danio rerio miR-375-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033788; mirn375-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..70
FT /accession="MIMAT0001876"
FT /product="dre-miR-375"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 80 BP; 17 A; 19 C; 19 G; 0 T; 25 other;
ugcacuugcu uuacguugag ccacacgcac aauacaugug gauucaguuu uguucguucg 60
gcucgcguua agcaagugca 80
//
ID dre-mir-375-2 standard; RNA; DRE; 83 BP.
XX
AC MI0002073;
XX
DE Danio rerio miR-375-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628869; mir375-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..73
FT /accession="MIMAT0001876"
FT /product="dre-miR-375"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 83 BP; 17 A; 21 C; 22 G; 0 T; 23 other;
uguacuuguc ucacguugag ccacacgcac aaugccugca gaugaaaggg uuuuguucgu 60
ucggcucgcg uuacgcagau gca 83
//
ID dre-mir-454a standard; RNA; DRE; 124 BP.
XX
AC MI0002074;
XX
DE Danio rerio miR-454a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628739; mir454a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 77..98
FT /accession="MIMAT0001877"
FT /product="dre-miR-454a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 124 BP; 27 A; 22 C; 28 G; 0 T; 47 other;
uugcaggucg uuuaagaauu aauccuaauu cuugggaccc uaucaguauu gccucugcug 60
uccacugugu ucagaguagu gcaauauugc uaauaggguu uuagguuuua gguuguaccu 120
ucag 124
//
ID dre-mir-454b standard; RNA; DRE; 116 BP.
XX
AC MI0002076;
XX
DE Danio rerio miR-454b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628740; mir454b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 66..87
FT /accession="MIMAT0001878"
FT /product="dre-miR-454b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 116 BP; 29 A; 23 C; 23 G; 0 T; 41 other;
gauaaaugca ucuugcaggc gagacccuau caauauugcc ucugcuuuuc ucacuguuua 60
uggaguagug caauauugcu uauagggucu ugacuuuaag gcuaaucugc aauauc 116
//
ID dre-mir-455-1 standard; RNA; DRE; 96 BP.
XX
AC MI0002077;
XX
DE Danio rerio miR-455-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100628833; mir455.
XX
CC The mir-455 precursor was predicted computationally and a mature product
CC verified in human by Northern blot [2]. The precise sequence termini of
CC the mature form were derived by cloning from human and rat samples
CC (Landgraf and Tuschl, unpublished).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0001879"
FT /product="dre-miR-455-5p"
FT /evidence=not_experimental
FT /similarity="MI0003513"
FT miRNA 52..74
FT /accession="MIMAT0031993"
FT /product="dre-miR-455-3p"
FT /evidence=not_experimental
XX
SQ Sequence 96 BP; 20 A; 27 C; 25 G; 0 T; 24 other;
ucccuggugu gaggguaugu gcccuuggac uacaucgugg aagccagcac caugcagucc 60
augggcauau acacuugccu caaggccuag aucuuc 96
//
ID dre-mir-430c-2 standard; RNA; DRE; 73 BP.
XX
AC MI0002079;
XX
DE Danio rerio miR-430c-2 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628924; mir430c-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-3 standard; RNA; DRE; 73 BP.
XX
AC MI0002080;
XX
DE Danio rerio miR-430c-3 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628741; mir430c-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-4 standard; RNA; DRE; 73 BP.
XX
AC MI0002081;
XX
DE Danio rerio miR-430c-4 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628742; mir430c-4.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-5 standard; RNA; DRE; 73 BP.
XX
AC MI0002082;
XX
DE Danio rerio miR-430c-5 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628870; mir430c-5.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-6 standard; RNA; DRE; 73 BP.
XX
AC MI0002083;
XX
DE Danio rerio miR-430c-6 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628743; mir430c-6.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-7 standard; RNA; DRE; 73 BP.
XX
AC MI0002087;
XX
DE Danio rerio miR-430c-7 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628834; mir430c-7.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-8 standard; RNA; DRE; 73 BP.
XX
AC MI0002088;
XX
DE Danio rerio miR-430c-8 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628925; mir430c-8.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-9 standard; RNA; DRE; 73 BP.
XX
AC MI0002089;
XX
DE Danio rerio miR-430c-9 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628744; mir430c-9.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-10 standard; RNA; DRE; 73 BP.
XX
AC MI0002090;
XX
DE Danio rerio miR-430c-10 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628745; mir430c-10.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-11 standard; RNA; DRE; 73 BP.
XX
AC MI0002091;
XX
DE Danio rerio miR-430c-11 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628746; mir430c-11.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-12 standard; RNA; DRE; 73 BP.
XX
AC MI0002092;
XX
DE Danio rerio miR-430c-12 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628966; mir430c-12.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-13 standard; RNA; DRE; 73 BP.
XX
AC MI0002093;
XX
DE Danio rerio miR-430c-13 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628957; mir430c-13.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-14 standard; RNA; DRE; 73 BP.
XX
AC MI0002094;
XX
DE Danio rerio miR-430c-14 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628747; mir430c-14.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-15 standard; RNA; DRE; 73 BP.
XX
AC MI0002095;
XX
DE Danio rerio miR-430c-15 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628926; mir430c-15.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-16 standard; RNA; DRE; 73 BP.
XX
AC MI0002096;
XX
DE Danio rerio miR-430c-16 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628748; mir430c-16.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-17 standard; RNA; DRE; 73 BP.
XX
AC MI0002097;
XX
DE Danio rerio miR-430c-17 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628749; mir430c-17.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430c-18 standard; RNA; DRE; 73 BP.
XX
AC MI0002098;
XX
DE Danio rerio miR-430c-18 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628750; mir430c-18.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0031929"
FT /product="dre-miR-430c-5p"
FT /evidence=not_experimental
FT miRNA 45..66
FT /accession="MIMAT0001425"
FT /product="dre-miR-430c-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 73 BP; 18 A; 11 C; 14 G; 0 T; 30 other;
auuaagauca cuucaaacag gagcauugau uuguccuuug uucauaagug cuucucuuug 60
ggguaguuuu aau 73
//
ID dre-mir-430a-2 standard; RNA; DRE; 82 BP.
XX
AC MI0002111;
XX
DE Danio rerio miR-430a-2 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628751; mir430a-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031994"
FT /product="dre-miR-430a-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 19 A; 15 C; 22 G; 0 T; 26 other;
gucacuaucg guacccucac aaaggcacug acuuggaugc uguaauuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-3 standard; RNA; DRE; 82 BP.
XX
AC MI0002112;
XX
DE Danio rerio miR-430a-3 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628752; mir430a-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031994"
FT /product="dre-miR-430a-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 19 A; 15 C; 22 G; 0 T; 26 other;
gucacuaucg guacccucac aaaggcacug acuuggaugc uguaauuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-4 standard; RNA; DRE; 82 BP.
XX
AC MI0002113;
XX
DE Danio rerio miR-430a-4 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628928; mir430a-4.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031995"
FT /product="dre-miR-430a-4-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 18 A; 15 C; 20 G; 0 T; 29 other;
gucucuaucg guacccucac aaaagcacug acuuugaugc uguauuuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-5 standard; RNA; DRE; 82 BP.
XX
AC MI0002114;
XX
DE Danio rerio miR-430a-5 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033480; mirn430a-5.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031994"
FT /product="dre-miR-430a-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 19 A; 15 C; 22 G; 0 T; 26 other;
gucacuaucg guacccucac aaaggcacug acuuggaugc uguaauuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-6 standard; RNA; DRE; 82 BP.
XX
AC MI0002115;
XX
DE Danio rerio miR-430a-6 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628836; mir430a-6.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031994"
FT /product="dre-miR-430a-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 19 A; 15 C; 22 G; 0 T; 26 other;
gucacuaucg guacccucac aaaggcacug acuuggaugc uguaauuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-7 standard; RNA; DRE; 82 BP.
XX
AC MI0002116;
XX
DE Danio rerio miR-430a-7 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628872; mir430a-7.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031994"
FT /product="dre-miR-430a-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 19 A; 15 C; 22 G; 0 T; 26 other;
gucacuaucg guacccucac aaaggcacug acuuggaugc uguaauuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-8 standard; RNA; DRE; 82 BP.
XX
AC MI0002117;
XX
DE Danio rerio miR-430a-8 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628753; mir430a-8.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031994"
FT /product="dre-miR-430a-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 19 A; 15 C; 22 G; 0 T; 26 other;
gucacuaucg guacccucac aaaggcacug acuuggaugc uguaauuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-9 standard; RNA; DRE; 82 BP.
XX
AC MI0002118;
XX
DE Danio rerio miR-430a-9 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628754; mir430a-9.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031994"
FT /product="dre-miR-430a-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 19 A; 15 C; 22 G; 0 T; 26 other;
gucacuaucg guacccucac aaaggcacug acuuggaugc uguaauuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-10 standard; RNA; DRE; 82 BP.
XX
AC MI0002119;
XX
DE Danio rerio miR-430a-10 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628755; mir430a-10.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031994"
FT /product="dre-miR-430a-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 19 A; 15 C; 22 G; 0 T; 26 other;
gucacuaucg guacccucac aaaggcacug acuuggaugc uguaauuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-11 standard; RNA; DRE; 82 BP.
XX
AC MI0002120;
XX
DE Danio rerio miR-430a-11 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628929; mir430a-11.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031996"
FT /product="dre-miR-430a-11-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 19 A; 15 C; 20 G; 0 T; 28 other;
gucucuaucg guacccucac aaaagcacug acuuugaugc uguaauuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-12 standard; RNA; DRE; 82 BP.
XX
AC MI0002121;
XX
DE Danio rerio miR-430a-12 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628837; mir430a-12.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031997"
FT /product="dre-miR-430a-12-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 18 A; 15 C; 20 G; 0 T; 29 other;
gucucuaucg guacccucac aaaagcacug acuuugaugc uguauuuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-13 standard; RNA; DRE; 82 BP.
XX
AC MI0002122;
XX
DE Danio rerio miR-430a-13 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628873; mir430a-13.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031998"
FT /product="dre-miR-430a-13-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 18 A; 15 C; 20 G; 0 T; 29 other;
gucucuaucg guacccucac aaaagcacug acuuugaugc uguauuuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-14 standard; RNA; DRE; 82 BP.
XX
AC MI0002123;
XX
DE Danio rerio miR-430a-14 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628756; mir430a-14.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0031999"
FT /product="dre-miR-430a-14-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 18 A; 15 C; 20 G; 0 T; 29 other;
gucucuaucg guacccucac aaaagcacug acuuugaugc uguauuuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-15 standard; RNA; DRE; 82 BP.
XX
AC MI0002124;
XX
DE Danio rerio miR-430a-15 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628757; mir430a-15.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0032000"
FT /product="dre-miR-430a-15-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 18 A; 15 C; 20 G; 0 T; 29 other;
gucucuaucg guacccucac aaaagcacug acuuugaugc uguauuuggu aagugcuauu 60
uguuggggua guuucaagug ac 82
//
ID dre-mir-430a-16 standard; RNA; DRE; 82 BP.
XX
AC MI0002125;
XX
DE Danio rerio miR-430a-16 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628758; mir430a-16.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0032001"
FT /product="dre-miR-430a-16-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 18 A; 14 C; 20 G; 0 T; 30 other;
gucucuaucg guacccucac aaaagcacug acuuugaugc uguauuuggu aagugcuauu 60
uguuggggua guuuuaagug ac 82
//
ID dre-mir-430a-17 standard; RNA; DRE; 82 BP.
XX
AC MI0002126;
XX
DE Danio rerio miR-430a-17 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628930; mir430a-17.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0032002"
FT /product="dre-miR-430a-17-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 82 BP; 18 A; 14 C; 20 G; 0 T; 30 other;
gucucuaucg guacccucac aaaagcacug acuuugaugc uguauuuggu aagugcuauu 60
uguuggggua guuuuaagug ac 82
//
ID dre-mir-430a-18 standard; RNA; DRE; 90 BP.
XX
AC MI0002131;
XX
DE Danio rerio miR-430a-18 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628958; mir430a-18.
XX
FH Key Location/Qualifiers
FH
FT miRNA 59..80
FT /accession="MIMAT0001423"
FT /product="dre-miR-430a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 90 BP; 23 A; 15 C; 21 G; 0 T; 31 other;
gucaggcuuu cacaagccag ccucaaaguu uguucucaaa cuuuaagaau cuaguuggua 60
agugcuauuu guugggguag uuucaaguga 90
//
ID dre-mir-430i-1 standard; RNA; DRE; 82 BP.
XX
AC MI0002139;
XX
DE Danio rerio miR-430i-1 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628838; mir430i-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0032003"
FT /product="dre-miR-430i-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001880"
FT /product="dre-miR-430i-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 82 BP; 18 A; 16 C; 19 G; 0 T; 29 other;
gucucuaucg guacccucac aaaagcacug acuuugaugc uguauuuggu aagugcuauu 60
uguuggcgua guuucaagug ac 82
//
ID dre-mir-430i-2 standard; RNA; DRE; 82 BP.
XX
AC MI0002140;
XX
DE Danio rerio miR-430i-2 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628762; mir430i-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0032003"
FT /product="dre-miR-430i-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001880"
FT /product="dre-miR-430i-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 82 BP; 18 A; 16 C; 19 G; 0 T; 29 other;
gucucuaucg guacccucac aaaagcacug acuuugaugc uguauuuggu aagugcuauu 60
uguuggcgua guuucaagug ac 82
//
ID dre-mir-430i-3 standard; RNA; DRE; 82 BP.
XX
AC MI0002141;
XX
DE Danio rerio miR-430i-3 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628874; mir430i-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0032003"
FT /product="dre-miR-430i-5p"
FT /evidence=not_experimental
FT miRNA 50..71
FT /accession="MIMAT0001880"
FT /product="dre-miR-430i-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 82 BP; 18 A; 16 C; 19 G; 0 T; 29 other;
gucucuaucg guacccucac aaaagcacug acuuugaugc uguauuuggu aagugcuauu 60
uguuggcgua guuucaagug ac 82
//
ID dre-mir-430b-2 standard; RNA; DRE; 81 BP.
XX
AC MI0002142;
XX
DE Danio rerio miR-430b-2 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628763; mir430b-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 22 A; 12 C; 19 G; 0 T; 28 other;
caguugaggu caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-3 standard; RNA; DRE; 81 BP.
XX
AC MI0002143;
XX
DE Danio rerio miR-430b-3 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628932; mir430b-3.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 22 A; 12 C; 19 G; 0 T; 28 other;
caguugaggu caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-4 standard; RNA; DRE; 81 BP.
XX
AC MI0002144;
XX
DE Danio rerio miR-430b-4 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628764; mir430b-4.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 22 A; 14 C; 18 G; 0 T; 27 other;
caguugacau caacucuaac uuuagcaucu uucuuuuaag cagagcagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-6 standard; RNA; DRE; 81 BP.
XX
AC MI0002146;
XX
DE Danio rerio miR-430b-6 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628839; mir430b-6.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 21 A; 13 C; 19 G; 0 T; 28 other;
caguugacgu caacucuaac uuuagcaucu uucuuuuaag cagaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-7 standard; RNA; DRE; 81 BP.
XX
AC MI0002147;
XX
DE Danio rerio miR-430b-7 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628765; mir430b-7.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 21 A; 13 C; 19 G; 0 T; 28 other;
caguugacgu caacucuaac uuuagcaucu uucuuuuaag cagaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-8 standard; RNA; DRE; 81 BP.
XX
AC MI0002148;
XX
DE Danio rerio miR-430b-8 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628766; mir430b-8.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 21 A; 13 C; 19 G; 0 T; 28 other;
caguugacgu caacucuaac uuuagcaucu uucuuuuaag cagaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-9 standard; RNA; DRE; 81 BP.
XX
AC MI0002149;
XX
DE Danio rerio miR-430b-9 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628875; mir430b-9.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 22 A; 12 C; 18 G; 0 T; 29 other;
caguugaggu caacucuaac uuuagcaucu uucuuuuaag cauaguagaa agugcuauca 60
aguuggggua gauguuuacu g 81
//
ID dre-mir-430b-10 standard; RNA; DRE; 81 BP.
XX
AC MI0002150;
XX
DE Danio rerio miR-430b-10 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033509; mirn430b-10.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 23 A; 13 C; 17 G; 0 T; 28 other;
caguugacau caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-11 standard; RNA; DRE; 81 BP.
XX
AC MI0002151;
XX
DE Danio rerio miR-430b-11 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628933; mir430b-11.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 23 A; 13 C; 17 G; 0 T; 28 other;
caguugacau caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-12 standard; RNA; DRE; 81 BP.
XX
AC MI0002152;
XX
DE Danio rerio miR-430b-12 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628767; mir430b-12.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 23 A; 13 C; 17 G; 0 T; 28 other;
caguugacau caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-13 standard; RNA; DRE; 81 BP.
XX
AC MI0002153;
XX
DE Danio rerio miR-430b-13 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628959; mir430b-13.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 23 A; 13 C; 17 G; 0 T; 28 other;
caguugacau caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-14 standard; RNA; DRE; 81 BP.
XX
AC MI0002154;
XX
DE Danio rerio miR-430b-14 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628768; mir430b-14.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 23 A; 13 C; 17 G; 0 T; 28 other;
caguugacau caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-15 standard; RNA; DRE; 81 BP.
XX
AC MI0002155;
XX
DE Danio rerio miR-430b-15 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628934; mir430b-15.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 23 A; 13 C; 17 G; 0 T; 28 other;
caguugacau caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-16 standard; RNA; DRE; 81 BP.
XX
AC MI0002156;
XX
DE Danio rerio miR-430b-16 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628876; mir430b-16.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 23 A; 13 C; 17 G; 0 T; 28 other;
caguugacau caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-17 standard; RNA; DRE; 81 BP.
XX
AC MI0002157;
XX
DE Danio rerio miR-430b-17 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628769; mir430b-17.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 23 A; 13 C; 17 G; 0 T; 28 other;
caguugacau caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-18 standard; RNA; DRE; 81 BP.
XX
AC MI0002158;
XX
DE Danio rerio miR-430b-18 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628770; mir430b-18.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 22 A; 11 C; 19 G; 0 T; 29 other;
caguugaggu caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuuguu g 81
//
ID dre-mir-430b-5 standard; RNA; DRE; 81 BP.
XX
AC MI0002166;
XX
DE Danio rerio miR-430b-5 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628840; mir430b-5.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 23 A; 13 C; 17 G; 0 T; 28 other;
caguugacau caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuugcu g 81
//
ID dre-mir-430b-19 standard; RNA; DRE; 81 BP.
XX
AC MI0002170;
XX
DE Danio rerio miR-430b-19 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628771; mir430b-19.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 22 A; 11 C; 19 G; 0 T; 29 other;
caguugaggu caacucuaac uuuagcaucu uucuuuuaag caaaguagaa agugcuauca 60
aguuggggua gauguuuguu g 81
//
ID dre-mir-430b-20 standard; RNA; DRE; 81 BP.
XX
AC MI0002171;
XX
DE Danio rerio miR-430b-20 stem-loop
XX
RN [1]
RX PUBMED; 15774722.
RA Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville
RA S, Hammond SM, Bartel DP, Schier AF;
RT "MicroRNAs regulate brain morphogenesis in zebrafish";
RL Science. 308:833-838(2005).
XX
RN [2]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628935; mir430b-20.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..33
FT /accession="MIMAT0031928"
FT /product="dre-miR-430b-5p"
FT /evidence=not_experimental
FT miRNA 49..71
FT /accession="MIMAT0001424"
FT /product="dre-miR-430b-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2]"
XX
SQ Sequence 81 BP; 22 A; 12 C; 18 G; 0 T; 29 other;
caguugaggu caacucuaac uuuagcaucu uucuuuuaag cauaguagaa agugcuauca 60
aguuggggua gauguuuacu g 81
//
ID dre-mir-456 standard; RNA; DRE; 85 BP.
XX
AC MI0002176;
XX
DE Danio rerio miR-456 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628772; mir456.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..75
FT /accession="MIMAT0001882"
FT /product="dre-miR-456"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 85 BP; 14 A; 19 C; 27 G; 0 T; 25 other;
gcugguugug ugugcaggca ucuuuccagu cuacaugugg auccaggagu cugcaggcug 60
guuagauggu ugucacguac ccagc 85
//
ID dre-mir-457a standard; RNA; DRE; 83 BP.
XX
AC MI0002177;
XX
DE Danio rerio miR-457a stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628773; mir457a.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001883"
FT /product="dre-miR-457a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 83 BP; 16 A; 24 C; 21 G; 0 T; 22 other;
ugccugacag aagcagcaca ucaauauugg cagcugcccu cucucugggu ugccaguaug 60
guuugugcug cucccgucag aca 83
//
ID dre-mir-457b standard; RNA; DRE; 78 BP.
XX
AC MI0002178;
XX
DE Danio rerio miR-457b stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628774; mir457b.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001884"
FT /product="dre-miR-457b-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 48..69
FT /accession="MIMAT0032004"
FT /product="dre-miR-457b-3p"
FT /evidence=not_experimental
XX
SQ Sequence 78 BP; 22 A; 12 C; 20 G; 0 T; 24 other;
gaauguacua aagcagcaca uaaauacugg aggugauugu gguguuaucc aguauugcug 60
uucugcugua guaagacc 78
//
ID dre-mir-458 standard; RNA; DRE; 78 BP.
XX
AC MI0002179;
XX
DE Danio rerio miR-458 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628937; mir458.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..33
FT /accession="MIMAT0032005"
FT /product="dre-miR-458-5p"
FT /evidence=not_experimental
FT miRNA 48..69
FT /accession="MIMAT0001885"
FT /product="dre-miR-458-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 78 BP; 22 A; 17 C; 17 G; 0 T; 22 other;
gugcagauag cagcgccauu uacagagcua uaagcaucau aguugucaua gcucuuugaa 60
ugguacugcc auaugcac 78
//
ID dre-mir-459 standard; RNA; DRE; 81 BP.
XX
AC MI0002180;
XX
DE Danio rerio miR-459 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100033529; mir459.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001886"
FT /product="dre-miR-459-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 52..73
FT /accession="MIMAT0003408"
FT /product="dre-miR-459-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 81 BP; 19 A; 18 C; 18 G; 0 T; 26 other;
ccucuugcuc ucaguaacaa ggauucaucc uguuguggua cucaaaucca acagggaauc 60
ucuguuacug ggguuaaggu u 81
//
ID dre-mir-460 standard; RNA; DRE; 77 BP.
XX
AC MI0002181;
XX
DE Danio rerio miR-460 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628842; mir460.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001887"
FT /product="dre-miR-460-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT miRNA 48..69
FT /accession="MIMAT0001888"
FT /product="dre-miR-460-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 77 BP; 19 A; 20 C; 21 G; 0 T; 17 other;
cuccucggcu ccugcauugu acacacugug cggaaaacau ggacaugcac agcgcauaca 60
auguggaugc uguggag 77
//
ID dre-mir-461 standard; RNA; DRE; 79 BP.
XX
AC MI0002183;
XX
DE Danio rerio miR-461 stem-loop
XX
RN [1]
RX PUBMED; 15937218.
RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T;
RT "The developmental miRNA profiles of zebrafish as determined by small RNA
RT cloning";
RL Genes Dev. 19:1288-1293(2005).
XX
DR ENTREZGENE; 100628776; mir461.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0001889"
FT /product="dre-miR-461"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 79 BP; 34 A; 12 C; 15 G; 0 T; 18 other;
auuuugaaaa ucaggaaugg gcuaaaugcc aaucaaaaua aagcaagucu uugguccaga 60
ccagguaaua caaaauaag 79
//
ID ptc-MIR156a standard; RNA; PTC; 101 BP.
XX
AC MI0002184;
XX
DE Populus trichocarpa miR156a stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..30
FT /accession="MIMAT0001890"
FT /product="ptc-miR156a"
FT /evidence=not_experimental
FT /similarity="MI0000179"
XX
SQ Sequence 101 BP; 32 A; 21 C; 25 G; 0 T; 23 other;
aaagaaagac ugacagaaga gagugagcac acacgaaagu auaugguaug aaggcauucc 60
auugcagggu gugugcucac aucucuucug ucagcuucca c 101
//
ID ptc-MIR156b standard; RNA; PTC; 101 BP.
XX
AC MI0002185;
XX
DE Populus trichocarpa miR156b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..30
FT /accession="MIMAT0001891"
FT /product="ptc-miR156b"
FT /evidence=not_experimental
FT /similarity="MI0000183"
XX
SQ Sequence 101 BP; 26 A; 26 C; 24 G; 0 T; 25 other;
guaagggagg ugacagaaga gagugagcac acaggguacu uucuugcaug acauccaugc 60
uugaaacuuu gcgugcucac ucucuaucug ucaccccacc a 101
//
ID ptc-MIR156c standard; RNA; PTC; 100 BP.
XX
AC MI0002186;
XX
DE Populus trichocarpa miR156c stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..30
FT /accession="MIMAT0001892"
FT /product="ptc-miR156c"
FT /evidence=not_experimental
FT /similarity="MI0000178"
XX
SQ Sequence 100 BP; 29 A; 22 C; 19 G; 0 T; 30 other;
cauuagaaac ugacagaaga gagugagcac acagaggcau auuuguauaa aucuauacca 60
uugcuuuugc gugcucacuu cucauucugu cagcuuccag 100
//
ID ptc-MIR156d standard; RNA; PTC; 101 BP.
XX
AC MI0002187;
XX
DE Populus trichocarpa miR156d stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..30
FT /accession="MIMAT0001893"
FT /product="ptc-miR156d"
FT /evidence=not_experimental
FT /similarity="MI0002190"
XX
SQ Sequence 101 BP; 24 A; 26 C; 24 G; 0 T; 27 other;
guaagugagu ugacagaaga gagugagcac acaggguacu uucuugcaug acguucaugc 60
uugaagcuuu gcgugcccac ccucuaucug ucaccccauc a 101
//
ID ptc-MIR156e standard; RNA; PTC; 101 BP.
XX
AC MI0002188;
XX
DE Populus trichocarpa miR156e stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..30
FT /accession="MIMAT0001894"
FT /product="ptc-miR156e"
FT /evidence=not_experimental
FT /similarity="MI0002193"
XX
SQ Sequence 101 BP; 30 A; 22 C; 19 G; 0 T; 30 other;
cauuagaaac ugacagaaga gagugagcac acagaggcau auuuguauaa aucuauacca 60
uugcuuuugc gugcucacuu cucauucugu cagcuuccag a 101
//
ID ptc-MIR156f standard; RNA; PTC; 101 BP.
XX
AC MI0002189;
XX
DE Populus trichocarpa miR156f stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..30
FT /accession="MIMAT0001895"
FT /product="ptc-miR156f"
FT /evidence=not_experimental
FT /similarity="MI0000179"
XX
SQ Sequence 101 BP; 33 A; 20 C; 24 G; 0 T; 24 other;
agagaaagac ugacagaaga gagugagcac acacgaaagc uaauuguaug aaagcauacc 60
auugcagggu gugugcucac uucucuucug ucagcuuaca u 101
//
ID ptc-MIR156g standard; RNA; PTC; 103 BP.
XX
AC MI0002190;
XX
DE Populus trichocarpa miR156g stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001896"
FT /product="ptc-miR156g"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 103 BP; 26 A; 21 C; 23 G; 0 T; 33 other;
ggugauguug uugacagaag auagagagca cagaugauga aaugcaugga gcuuaauugc 60
aucucacucc uuugugcucu cuagucuucu gucaucaccu uca 103
//
ID ptc-MIR156h standard; RNA; PTC; 103 BP.
XX
AC MI0002191;
XX
DE Populus trichocarpa miR156h stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001897"
FT /product="ptc-miR156h"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 103 BP; 25 A; 23 C; 23 G; 0 T; 32 other;
ggugaugcug uugacagaag auagagagca cugacgauga aaugcaugga gcuuaauugc 60
aucucacucc uuugugcucu cuagucuucu gucaucaccu uca 103
//
ID ptc-MIR156i standard; RNA; PTC; 99 BP.
XX
AC MI0002192;
XX
DE Populus trichocarpa miR156i stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001898"
FT /product="ptc-miR156i"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 99 BP; 21 A; 22 C; 22 G; 0 T; 34 other;
ugugauguug uugacagaag auagagagca cagaugaugu uuugcaguag acucuggauc 60
ucacuccuuu gugcucucua ugcuucugcc aucaccuuc 99
//
ID ptc-MIR156j standard; RNA; PTC; 100 BP.
XX
AC MI0002193;
XX
DE Populus trichocarpa miR156j stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001899"
FT /product="ptc-miR156j"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 100 BP; 24 A; 22 C; 22 G; 0 T; 32 other;
ggugauguug uugacagaag auagagagca cagaugauga uaugcaaugg acucugcauc 60
ccacuccuuu gugcucucua ugcuucuguc aucacuuuca 100
//
ID ptc-MIR156k standard; RNA; PTC; 101 BP.
XX
AC MI0002194;
XX
DE Populus trichocarpa miR156k stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..30
FT /accession="MIMAT0001900"
FT /product="ptc-miR156k"
FT /evidence=not_experimental
FT /similarity="MI0000178"
XX
SQ Sequence 101 BP; 26 A; 22 C; 22 G; 0 T; 31 other;
uuaugcaugc ugacagaaga gagggagcac aacccuguaa uagcuaaaga gagucuuugc 60
uuuuguugga cugugcuuuc ucuucuucug ucaccaacca a 101
//
ID ptc-MIR159a standard; RNA; PTC; 183 BP.
XX
AC MI0002195;
XX
DE Populus trichocarpa miR159a stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 154..174
FT /accession="MIMAT0001901"
FT /product="ptc-miR159a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 183 BP; 47 A; 35 C; 46 G; 0 T; 55 other;
gauuagggag uggagcuccu ugaaguccaa uagagguucu ugcuggguag auuaagcugc 60
uaagcuaugg auccacaguc cuaucuauca accgaaggau agguuugcgg cuugcauauc 120
ucaggagcuu uauugccuaa uguuagaucc cuuuuuggau ugaagggagc ucuaaaccca 180
uaa 183
//
ID ptc-MIR159b standard; RNA; PTC; 187 BP.
XX
AC MI0002196;
XX
DE Populus trichocarpa miR159b stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 158..178
FT /accession="MIMAT0001902"
FT /product="ptc-miR159b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 187 BP; 44 A; 40 C; 45 G; 0 T; 58 other;
gauuauggag uggagcuccu ugaaguccaa uagaagcucc ugcuggguag aucgagcugc 60
ugagcuauga aucccacagc ccuaucacca ucagucauuu ugaugggccu gcggcuugca 120
uaucucagga gcuuuauuac cuaauguuag aucuuuuuuu ggauugaagg gagcucuaaa 180
ccuuuga 187
//
ID ptc-MIR159d standard; RNA; PTC; 194 BP.
XX
AC MI0002198;
XX
DE Populus trichocarpa miR159d stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 165..185
FT /accession="MIMAT0001904"
FT /product="ptc-miR159d"
FT /evidence=not_experimental
FT /similarity="MI0000189"
XX
SQ Sequence 194 BP; 42 A; 34 C; 53 G; 0 T; 65 other;
uuguaaauuu gggagcuuuc uuugguucaa aaugaggaaa gaaagugggu auacucgucu 60
gcuuguucau ggauaccucu ggguugcgca ggauauauua guuagggcua cagcuuaagg 120
guuugcaugg ccaaggagac guugccugcc uucuccuuuc guuucuugga uugaagggag 180
cuccuacaug uauc 194
//
ID ptc-MIR159e standard; RNA; PTC; 192 BP.
XX
AC MI0002199;
XX
DE Populus trichocarpa miR159e stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 163..183
FT /accession="MIMAT0001905"
FT /product="ptc-miR159e"
FT /evidence=not_experimental
FT /similarity="MI0001086"
XX
SQ Sequence 192 BP; 42 A; 40 C; 58 G; 0 T; 52 other;
accauuaaau aggagcuugc ucacuccaga ucugaaagga ggugauagga aaccacuucu 60
gcuacuucau gaauacccgu gggugugcgc guagccaugg ugagcugcgc aggcuaaggg 120
ucugcaugug cuaggagaug ugguugccuu gaucuuuuug gucuuggggu gaagggagcu 180
ccuauagucc ca 192
//
ID ptc-MIR159c standard; RNA; PTC; 201 BP.
XX
AC MI0002200;
XX
DE Populus trichocarpa miR159c stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 173..193
FT /accession="MIMAT0001906"
FT /product="ptc-miR159c"
FT /evidence=not_experimental
FT /similarity="MI0001086"
XX
SQ Sequence 201 BP; 44 A; 45 C; 62 G; 0 T; 50 other;
gaggcucaau ggagcucucc ccacuccaug ccugaaagga guucgauggu agaccauggc 60
ugcuaguuca ugaauacccu ugggugcgca gaauuagcaa cggugcaggc gaaguugcgc 120
aggcuaaggg ucugcaugac cuaggagacg ugguuacccu gacccuuuuu guauuggagu 180
gaagggagcu cgauggucuu u 201
//
ID ptc-MIR160a standard; RNA; PTC; 102 BP.
XX
AC MI0002201;
XX
DE Populus trichocarpa miR160a stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001907"
FT /product="ptc-miR160a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 102 BP; 21 A; 25 C; 27 G; 0 T; 29 other;
acauggguua ugccuggcuc ccuguaugcc acaagcaaag accaaucuuu uguuuuagau 60
uggcuguugc cgguggcgug cgaggagcca agcauacucu cu 102
//
ID ptc-MIR160b standard; RNA; PTC; 98 BP.
XX
AC MI0002202;
XX
DE Populus trichocarpa miR160b stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [4]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001908"
FT /product="ptc-miR160b-5p"
FT /evidence=experimental
FT /experiment="cloned [1], miRNAseq [4]"
FT miRNA 72..92
FT /accession="MIMAT0022890"
FT /product="ptc-miR160b-3p"
FT /evidence=experimental
FT /experiment="miRNAseq [4]"
XX
SQ Sequence 98 BP; 20 A; 26 C; 26 G; 0 T; 26 other;
auauuauaug ugccuggcuc ccuguaugcc auuugcagag cccaacggau ccucgauggc 60
cuccguggau ggcguaugag gagccaugca uauucgca 98
//
ID ptc-MIR160c standard; RNA; PTC; 98 BP.
XX
AC MI0002203;
XX
DE Populus trichocarpa miR160c stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [4]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001909"
FT /product="ptc-miR160c-5p"
FT /evidence=experimental
FT /experiment="cloned [1], miRNAseq [4]"
FT miRNA 72..92
FT /accession="MIMAT0022891"
FT /product="ptc-miR160c-3p"
FT /evidence=experimental
FT /experiment="miRNAseq [4]"
XX
SQ Sequence 98 BP; 19 A; 26 C; 25 G; 0 T; 28 other;
auauuauaug ugccuggcuc ccuguaugcc auuugcagag cccaccgguu cuucgauggc 60
cuccguggau ggcguaugag gagccaugca uauucaca 98
//
ID ptc-MIR160d standard; RNA; PTC; 103 BP.
XX
AC MI0002204;
XX
DE Populus trichocarpa miR160d stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001910"
FT /product="ptc-miR160d"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 103 BP; 21 A; 28 C; 27 G; 0 T; 27 other;
aaauggguua ugccuggcuc ccuguaugcc acagcaaaga ccaaucucuu cugucuuaga 60
uuggcugcug ccgguggcgu gcgaggagcc aagcauacuc ucu 103
//
ID ptc-MIR160e standard; RNA; PTC; 100 BP.
XX
AC MI0002205;
XX
DE Populus trichocarpa miR160e stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [3]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001911"
FT /product="ptc-miR160e-5p"
FT /evidence=experimental
FT /experiment="miRNAseq [3]"
FT /similarity="MI0002202"
FT miRNA 74..94
FT /accession="MIMAT0022892"
FT /product="ptc-miR160e-3p"
FT /evidence=experimental
FT /experiment="miRNAseq [3]"
XX
SQ Sequence 100 BP; 24 A; 22 C; 29 G; 0 T; 25 other;
aagaauggcc ugccuggcuc ccugaaugcc aucuaggaag cuugucaaag aguguuggca 60
accuuucuau uuggcaugag gggagucgag caggccaauu 100
//
ID ptc-MIR160f standard; RNA; PTC; 100 BP.
XX
AC MI0002206;
XX
DE Populus trichocarpa miR160f stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001912"
FT /product="ptc-miR160f"
FT /evidence=not_experimental
FT /similarity="MI0002202"
XX
SQ Sequence 100 BP; 25 A; 26 C; 28 G; 0 T; 21 other;
aagaaugguc ugccuggcuc ccugaaugcc aucuaggaag cuugucaaag aguguuggca 60
accucucuaa cuggcaugag gggagucacg caggcccaac 100
//
ID ptc-MIR160g standard; RNA; PTC; 98 BP.
XX
AC MI0002207;
XX
DE Populus trichocarpa miR160g stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001913"
FT /product="ptc-miR160g"
FT /evidence=not_experimental
FT /similarity="MI0002202"
XX
SQ Sequence 98 BP; 23 A; 23 C; 26 G; 0 T; 26 other;
gggaucaauc ugccuggcuc ccuggaugcc aacuaagaaa uuugucgagu ggucuugacu 60
cuucauaguu ggcaucagag gagucaugca gguccaac 98
//
ID ptc-MIR160h standard; RNA; PTC; 98 BP.
XX
AC MI0002208;
XX
DE Populus trichocarpa miR160h stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001914"
FT /product="ptc-miR160h"
FT /evidence=not_experimental
FT /similarity="MI0002202"
XX
SQ Sequence 98 BP; 16 A; 26 C; 30 G; 0 T; 26 other;
gaucccugug ugccuggcuc ccugcaugcc auuugcauag cucaucagaa cgucgguggc 60
cuugguggau ggcgugcaac gagucaugca ugcuguga 98
//
ID ptc-MIR162a standard; RNA; PTC; 107 BP.
XX
AC MI0002209;
XX
DE Populus trichocarpa miR162a stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 78..98
FT /accession="MIMAT0001915"
FT /product="ptc-miR162a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 107 BP; 27 A; 28 C; 23 G; 0 T; 29 other;
ugggaagaca cuggaggcag cgguucaucg aucucuuccu ggccaauuuu uuguuuagca 60
cgaaaaacau gaaccgaucg auaaaccucu gcauccagcg cuuccuu 107
//
ID ptc-MIR162b standard; RNA; PTC; 107 BP.
XX
AC MI0002210;
XX
DE Populus trichocarpa miR162b stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 78..98
FT /accession="MIMAT0001916"
FT /product="ptc-miR162b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 107 BP; 28 A; 27 C; 21 G; 0 T; 31 other;
ugagaagaca cuggaggcag cgguucaucg aucuuuuccu gaagauuuuu uuguuuuaca 60
cgaacaacac gaaccgaucg auaaaccucu gcauccagug cuucccu 107
//
ID ptc-MIR164a standard; RNA; PTC; 85 BP.
XX
AC MI0002212;
XX
DE Populus trichocarpa miR164a stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001918"
FT /product="ptc-miR164a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 85 BP; 18 A; 24 C; 22 G; 0 T; 21 other;
gguuccuugc uggagaagca gggcacgugc aaaauccuga ugaagugcuu acacuuugca 60
cgcgcucuuc uucuccaaca cgggc 85
//
ID ptc-MIR164b standard; RNA; PTC; 162 BP.
XX
AC MI0002213;
XX
DE Populus trichocarpa miR164b stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001919"
FT /product="ptc-miR164b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 162 BP; 40 A; 35 C; 39 G; 0 T; 48 other;
gugagcaaga uggagaagca gggcacgugc acuacuaacu caugcacaca gagagggaga 60
cgcauuucuu gcuggaguua cgaguuacga cucuuaccua cuauugauuu uguuagcucc 120
agugaguuag uuauucaugu gccugucuuc cucaucauga uc 162
//
ID ptc-MIR164c standard; RNA; PTC; 82 BP.
XX
AC MI0002214;
XX
DE Populus trichocarpa miR164c stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001920"
FT /product="ptc-miR164c"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 82 BP; 13 A; 27 C; 20 G; 0 T; 22 other;
uagcucuugc uggagaagca gggcacgugc aagcucucuc cucaggcuuu ccuugcacgu 60
gcuccccuuc uccaacaugg gu 82
//
ID ptc-MIR164d standard; RNA; PTC; 99 BP.
XX
AC MI0002215;
XX
DE Populus trichocarpa miR164d stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001921"
FT /product="ptc-miR164d"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 99 BP; 21 A; 31 C; 24 G; 0 T; 23 other;
uggcucacgc uggagaagca gggcacgugc aaaauccuuc ucggcuucca gaugcugaug 60
aagcacucuu ugcacgugcu ccccuccucc aacaugagu 99
//
ID ptc-MIR164e standard; RNA; PTC; 155 BP.
XX
AC MI0002216;
XX
DE Populus trichocarpa miR164e stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [3]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [4]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001922"
FT /product="ptc-miR164e"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 155 BP; 38 A; 33 C; 38 G; 0 T; 46 other;
gugagcaaga uggagaagca gggcacgugc auuacuaacu caugcacaca gagugagaga 60
gacauuucuu gcuggaguua ugacucuuac cuacuauaga uuguguuggc uucagcgagu 120
uaguucuuca ugugccuguc uuccccauca ugauc 155
//
ID ptc-MIR164f standard; RNA; PTC; 90 BP.
XX
AC MI0002217;
XX
DE Populus trichocarpa miR164f stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001923"
FT /product="ptc-miR164f"
FT /evidence=not_experimental
FT /similarity="MI0002212"
XX
SQ Sequence 90 BP; 22 A; 20 C; 22 G; 0 T; 26 other;
ugagccaugc uggagaagca gggcacaugc uaaaucuauc agcuugaaag ucugauaguu 60
uugcaugugc ucuaucucuc cagcuuggac 90
//
ID ptc-MIR166a standard; RNA; PTC; 164 BP.
XX
AC MI0002218;
XX
DE Populus trichocarpa miR166a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 135..155
FT /accession="MIMAT0001924"
FT /product="ptc-miR166a"
FT /evidence=not_experimental
FT /similarity="MI0000203"
XX
SQ Sequence 164 BP; 42 A; 25 C; 31 G; 0 T; 66 other;
uuucuuuuga ggggaauguu gucuggcucg aggucacuaa ugggaucuau gauuuuaucu 60
caauugauug auuuucuuuu aaauucuagu aaauugaauu gagagauauc augaucaacu 120
uauauuuaau gaugucggac caggcuucau uccccccaau uguu 164
//
ID ptc-MIR166b standard; RNA; PTC; 106 BP.
XX
AC MI0002219;
XX
DE Populus trichocarpa miR166b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 77..97
FT /accession="MIMAT0001925"
FT /product="ptc-miR166b"
FT /evidence=not_experimental
FT /similarity="MI0000207"
XX
SQ Sequence 106 BP; 25 A; 20 C; 24 G; 0 T; 37 other;
uaacuguuga ggggauugcu gucugguucg augucauuca ugugaagcuu uaacauuaau 60
guaguauuga gugauuucgg accaggcuuc auucccccca acuaua 106
//
ID ptc-MIR166c standard; RNA; PTC; 134 BP.
XX
AC MI0002220;
XX
DE Populus trichocarpa miR166c stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 105..125
FT /accession="MIMAT0001926"
FT /product="ptc-miR166c"
FT /evidence=not_experimental
FT /similarity="MI0000202"
XX
SQ Sequence 134 BP; 26 A; 27 C; 29 G; 0 T; 52 other;
cuuuuuuuga ggggaauguu gucuggcucg aggacucuuu cuugaucagu cugaucaagu 60
guucuaucuu uagaucuaau aucuuagauc auguguuagg gucgucggac caggcuucau 120
uccccccaau uauu 134
//
ID ptc-MIR166d standard; RNA; PTC; 105 BP.
XX
AC MI0002221;
XX
DE Populus trichocarpa miR166d stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 76..96
FT /accession="MIMAT0001927"
FT /product="ptc-miR166d"
FT /evidence=not_experimental
FT /similarity="MI0000205"
XX
SQ Sequence 105 BP; 28 A; 24 C; 26 G; 0 T; 27 other;
cgugaguuga ggggaauguu ggcuggcucg aagcuuaagc aaagaguuuu cucucaagaa 60
acaacuguua aggcuucgga ccaggcuuca uuccccucaa ccaau 105
//
ID ptc-MIR166e standard; RNA; PTC; 106 BP.
XX
AC MI0002222;
XX
DE Populus trichocarpa miR166e stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 77..97
FT /accession="MIMAT0001928"
FT /product="ptc-miR166e"
FT /evidence=not_experimental
FT /similarity="MI0000207"
XX
SQ Sequence 106 BP; 30 A; 22 C; 23 G; 0 T; 31 other;
uaacuguuga ggggauuguc gucugguucg augucauuca ugagaagcuc aaacauaaac 60
guaauauuga augauuucgg accaggcuuc auucccccca acaaug 106
//
ID ptc-MIR166f standard; RNA; PTC; 105 BP.
XX
AC MI0002223;
XX
DE Populus trichocarpa miR166f stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 76..96
FT /accession="MIMAT0001929"
FT /product="ptc-miR166f"
FT /evidence=not_experimental
FT /similarity="MI0000205"
XX
SQ Sequence 105 BP; 29 A; 22 C; 27 G; 0 T; 27 other;
gguguguuga ggggaauguu ggcuggcucg aagcuuaagc aaagaguuuc cuaacaugaa 60
acaacuguua aggcuucgga ccaggcuuca uuccccucaa acaua 105
//
ID ptc-MIR166g standard; RNA; PTC; 103 BP.
XX
AC MI0002224;
XX
DE Populus trichocarpa miR166g stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 74..94
FT /accession="MIMAT0001930"
FT /product="ptc-miR166g"
FT /evidence=not_experimental
FT /similarity="MI0000206"
XX
SQ Sequence 103 BP; 24 A; 30 C; 23 G; 0 T; 26 other;
acacaguuga ggggaaugcu gucugguucg agaccauuca ccugaagcgc acgcauucau 60
cuuuugagug aucucggacc aggcuucauu ccccccaacu caa 103
//
ID ptc-MIR166h standard; RNA; PTC; 101 BP.
XX
AC MI0002225;
XX
DE Populus trichocarpa miR166h stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 72..92
FT /accession="MIMAT0001931"
FT /product="ptc-miR166h"
FT /evidence=not_experimental
FT /similarity="MI0000206"
XX
SQ Sequence 101 BP; 27 A; 29 C; 18 G; 0 T; 27 other;
acacaguuga ggggaaugcu gucugauucg agaccauuca cuuuaagcac acauucaucu 60
uucgaaugau cucggaccag gcuucauucc ccccaacuca a 101
//
ID ptc-MIR166i standard; RNA; PTC; 103 BP.
XX
AC MI0002226;
XX
DE Populus trichocarpa miR166i stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 74..94
FT /accession="MIMAT0001932"
FT /product="ptc-miR166i"
FT /evidence=not_experimental
FT /similarity="MI0000201"
XX
SQ Sequence 103 BP; 21 A; 25 C; 22 G; 0 T; 35 other;
ugucuuuuga ggggaauguu guuugguuca aggccuggcc accccauguc uuggaauuua 60
aaauaucaug uccucggacc aggcuucauu ccccucaauu acu 103
//
ID ptc-MIR166j standard; RNA; PTC; 143 BP.
XX
AC MI0002227;
XX
DE Populus trichocarpa miR166j stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 114..134
FT /accession="MIMAT0001933"
FT /product="ptc-miR166j"
FT /evidence=not_experimental
FT /similarity="MI0000204"
XX
SQ Sequence 143 BP; 31 A; 29 C; 28 G; 0 T; 55 other;
ucuuuuuuga ggggaauguu gucuggcucg aggacuuuuu guucaucaau cuaaucgaac 60
uuucuaccug uagaucuagu aucuuauuua agauugauca cguauuaggg uugucggacc 120
aggcuucauu ccccccaauc auu 143
//
ID ptc-MIR166k standard; RNA; PTC; 143 BP.
XX
AC MI0002228;
XX
DE Populus trichocarpa miR166k stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 114..134
FT /accession="MIMAT0001934"
FT /product="ptc-miR166k"
FT /evidence=not_experimental
FT /similarity="MI0000204"
XX
SQ Sequence 143 BP; 31 A; 29 C; 28 G; 0 T; 55 other;
ucuuuuuuga ggggaauguu gucuggcucg aggacuuuuu guucaucaau cuaaucgaac 60
uuucuaccug uagaucuagu aucuuauuua agauugauca cguauuaggg uugucggacc 120
aggcuucauu ccccccaauc auu 143
//
ID ptc-MIR166l standard; RNA; PTC; 97 BP.
XX
AC MI0002229;
XX
DE Populus trichocarpa miR166l stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 68..88
FT /accession="MIMAT0001935"
FT /product="ptc-miR166l"
FT /evidence=not_experimental
FT /similarity="MI0000199"
XX
SQ Sequence 97 BP; 21 A; 23 C; 20 G; 0 T; 33 other;
uaacuuuugu ggugaauguu gucugguuca aggcauggcc accacaucuc uuggugaaua 60
uauguccucg gaccaggcuu cauuccccuc aauuaau 97
//
ID ptc-MIR166m standard; RNA; PTC; 105 BP.
XX
AC MI0002230;
XX
DE Populus trichocarpa miR166m stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 76..96
FT /accession="MIMAT0001936"
FT /product="ptc-miR166m"
FT /evidence=not_experimental
FT /similarity="MI0000207"
XX
SQ Sequence 105 BP; 27 A; 24 C; 30 G; 0 T; 24 other;
ugaggaugug ggggaauguc gucugacucg agacaacagg uaaacugaag gaauggccgg 60
aguuuaagag uucucucgga ccaggcuuca uuccccucau ccaca 105
//
ID ptc-MIR166n standard; RNA; PTC; 331 BP.
XX
AC MI0002231;
XX
DE Populus trichocarpa miR166n stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 303..323
FT /accession="MIMAT0001937"
FT /product="ptc-miR166n"
FT /evidence=not_experimental
FT /similarity="MI0000203"
XX
SQ Sequence 331 BP; 75 A; 62 C; 65 G; 0 T; 129 other;
aagggguguu uggaaugaag uuugauccaa gauccuuguc ucucccguua acuuagucuc 60
uguuaccguu agguauucau uacugagugu auuugcagcc cccuugucug auuuuagcau 120
caugagagua ggaagugcug gugaucauag gguuugguuc aagauccauu ugacucuucu 180
cuuuauaucu cuccuguguc cuagcuggua aucuguagua gucuuaauua ucccuuacuu 240
cuuguuaauu uuuagguuug aucuugcaag uaauuauauu uggaaaauau cauaaaauga 300
ucucggacca ggcuucauuc cuuacaccuu g 331
//
ID ptc-MIR166o standard; RNA; PTC; 320 BP.
XX
AC MI0002232;
XX
DE Populus trichocarpa miR166o stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 292..312
FT /accession="MIMAT0001938"
FT /product="ptc-miR166o"
FT /evidence=not_experimental
FT /similarity="MI0000206"
XX
SQ Sequence 320 BP; 82 A; 58 C; 61 G; 0 T; 119 other;
aagggguguu uggaaugaag uuugauccaa gauccuuguc ucucccguuc auuuaguaau 60
guuacugcua gguuucgcua uguauugauc aguguauaca cagcagcuac gagcuaggcc 120
uuguguuuca gauuuuagcu ucaauauaga gugagaguga uagaguuuga uucaagaucc 180
aucucaugug ugcuagcuag cuuuuaaauu uuuaaucaua ucccuacuuc cuguuaauuc 240
uuagguuuua ucuugcaagu uauuauauuu aguaaacauc augaacugau cucggaccag 300
gcuucauucc uuacaccgaa 320
//
ID ptc-MIR166p standard; RNA; PTC; 146 BP.
XX
AC MI0002233;
XX
DE Populus trichocarpa miR166p stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 118..138
FT /accession="MIMAT0001939"
FT /product="ptc-miR166p"
FT /evidence=not_experimental
FT /similarity="MI0000204"
XX
SQ Sequence 146 BP; 40 A; 34 C; 34 G; 0 T; 38 other;
uaagguugag aggaacgcug ucugggucga ggucauggag gccaugauua uacauaaaug 60
gcauuaucug augacagccc agauaaucga ugcaccuguc uugaaccuaa augauucucg 120
gaccaggcuc cauuccuucc aaccau 146
//
ID ptc-MIR166q standard; RNA; PTC; 151 BP.
XX
AC MI0002234;
XX
DE Populus trichocarpa miR166q stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 123..143
FT /accession="MIMAT0001940"
FT /product="ptc-miR166q"
FT /evidence=not_experimental
FT /similarity="MI0000203"
XX
SQ Sequence 151 BP; 40 A; 31 C; 36 G; 0 T; 44 other;
uuagguugag aggaauguug ucuggcucga ggucauugag gccaugauua uacagacaug 60
gcauuaccug augacagccg agaaaauuca aagucugugu guaucuugua ccucgaugau 120
ucucggacca ggcuucauuc cuuccaacaa a 151
//
ID ptc-MIR167a standard; RNA; PTC; 89 BP.
XX
AC MI0002235;
XX
DE Populus trichocarpa miR167a stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001941"
FT /product="ptc-miR167a"
FT /evidence=not_experimental
FT /similarity="MI0000208"
XX
SQ Sequence 89 BP; 20 A; 18 C; 20 G; 0 T; 31 other;
cacuagcagu ugaagcugcc agcaugaucu aacuuccuug cuucuuuauc aaggauggau 60
uuagaucaug uggugguuuc accuguuga 89
//
ID ptc-MIR167b standard; RNA; PTC; 96 BP.
XX
AC MI0002236;
XX
DE Populus trichocarpa miR167b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001942"
FT /product="ptc-miR167b"
FT /evidence=not_experimental
FT /similarity="MI0000209"
XX
SQ Sequence 96 BP; 29 A; 22 C; 23 G; 0 T; 22 other;
agggaaaaag ugaagcugcc agcaugaucu aucuuugguu agagaaagaa aggacuaacc 60
cuagcuaggu caugcuguga cagccucacu ccuucc 96
//
ID ptc-MIR167c standard; RNA; PTC; 89 BP.
XX
AC MI0002237;
XX
DE Populus trichocarpa miR167c stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001943"
FT /product="ptc-miR167c"
FT /evidence=not_experimental
FT /similarity="MI0000208"
XX
SQ Sequence 89 BP; 24 A; 19 C; 18 G; 0 T; 28 other;
cacuagcagu ugaagcugcc agcaugaucu aaauuaaccu ccuucuuuau caaggaugga 60
uuagaucaug ugguaguuuc accugcuga 89
//
ID ptc-MIR167d standard; RNA; PTC; 105 BP.
XX
AC MI0002238;
XX
DE Populus trichocarpa miR167d stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001944"
FT /product="ptc-miR167d"
FT /evidence=not_experimental
FT /similarity="MI0000209"
XX
SQ Sequence 105 BP; 32 A; 24 C; 26 G; 0 T; 23 other;
agggaaaagg ugaagcugcc agcaugaucu aucuuugguu agagaaggau agaagcgaaa 60
gaacuaaccc uagcuagguc augcucugac agccucacuc cuucc 105
//
ID ptc-MIR167e standard; RNA; PTC; 91 BP.
XX
AC MI0002239;
XX
DE Populus trichocarpa miR167e stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001945"
FT /product="ptc-miR167e"
FT /evidence=not_experimental
FT /similarity="MI0000208"
XX
SQ Sequence 91 BP; 25 A; 17 C; 18 G; 0 T; 31 other;
cacuaguagu ugaagcugcc agcaugaucu gaacuuuccu uaauuuuccu auacgggaaa 60
gacuagauca ugugguaguu ucaucuauug a 91
//
ID ptc-MIR167f standard; RNA; PTC; 87 BP.
XX
AC MI0002240;
XX
DE Populus trichocarpa miR167f stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [2]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001946"
FT /product="ptc-miR167f-5p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
FT /similarity="MI0000208"
FT miRNA 61..81
FT /accession="MIMAT0022893"
FT /product="ptc-miR167f-3p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
XX
SQ Sequence 87 BP; 20 A; 20 C; 19 G; 0 T; 28 other;
cucuaucagu ugaagcugcc agcaugaucu uagccuuccu ccuuuguuga ggaaagaaac 60
agaucaugug gcaguuucac cuguugu 87
//
ID ptc-MIR167g standard; RNA; PTC; 86 BP.
XX
AC MI0002241;
XX
DE Populus trichocarpa miR167g stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [2]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001947"
FT /product="ptc-miR167g-5p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
FT /similarity="MI0000208"
FT miRNA 60..80
FT /accession="MIMAT0022894"
FT /product="ptc-miR167g-3p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
XX
SQ Sequence 86 BP; 23 A; 22 C; 18 G; 0 T; 23 other;
cacuaucagu ugaagcugcc agcaugaucu uaaccucccu ccuuugucga ggaaagaaca 60
gaucaugugg caguuucacc ugaagu 86
//
ID ptc-MIR167h standard; RNA; PTC; 91 BP.
XX
AC MI0002242;
XX
DE Populus trichocarpa miR167h stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [2]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001948"
FT /product="ptc-miR167h-5p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
FT /similarity="MI0000208"
FT miRNA 65..85
FT /accession="MIMAT0022895"
FT /product="ptc-miR167h-3p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
XX
SQ Sequence 91 BP; 25 A; 19 C; 17 G; 0 T; 30 other;
cgcuauuagu ugaagcugcc aacaugaucu gagcuuuccu uaauuuuccu auacaggaaa 60
gacuagauca uguggcaguu ucaccuauug a 91
//
ID ptc-MIR168a standard; RNA; PTC; 160 BP.
XX
AC MI0002243;
XX
DE Populus trichocarpa miR168a stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [4]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001949"
FT /product="ptc-miR168a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], miRNAseq [4]"
FT miRNA 134..154
FT /accession="MIMAT0022896"
FT /product="ptc-miR168a-3p"
FT /evidence=experimental
FT /experiment="miRNAseq [4]"
XX
SQ Sequence 160 BP; 50 A; 27 C; 48 G; 0 T; 35 other;
ggucucugau ucgcuuggug caggucggga acugauucgg cgauuugauu gccagauggc 60
ucgacaugac ugguuguugu ggaaaaagaa aaggaaggaa acaggaaaaa aaacaaagaa 120
uagcgaauug gaucccgccu ugcaucaacu gaaucggagg 160
//
ID ptc-MIR168b standard; RNA; PTC; 136 BP.
XX
AC MI0002244;
XX
DE Populus trichocarpa miR168b stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [3]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [4]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [5]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001950"
FT /product="ptc-miR168b-5p"
FT /evidence=experimental
FT /experiment="cloned [1], miRNAseq [5]"
FT miRNA 110..130
FT /accession="MIMAT0022897"
FT /product="ptc-miR168b-3p"
FT /evidence=experimental
FT /experiment="miRNAseq [5]"
XX
SQ Sequence 136 BP; 39 A; 25 C; 38 G; 0 T; 34 other;
ggucucuaau ucgcuuggug caggucggga acugauucgg cgauuugauu gccagauggc 60
uaaacacgau uggcugugag gcaaauuaua aaaagaaaga gaauuggauc ccgccuugca 120
ucaacugaau cggaga 136
//
ID ptc-MIR169a standard; RNA; PTC; 165 BP.
XX
AC MI0002245;
XX
DE Populus trichocarpa miR169a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001951"
FT /product="ptc-miR169a"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 165 BP; 53 A; 30 C; 30 G; 0 T; 52 other;
aagugguaug cagccaagga ugacuugccg acuuaacuga ucuguauaaa uuaaugcaug 60
uguagucaaa auuacuacua cuauauauua aucugaucug ugaccacaaa uuaacuaacu 120
acuagcuagu aauuaguugg caaguugucc auggcuacau gcugc 165
//
ID ptc-MIR169aa standard; RNA; PTC; 109 BP.
XX
AC MI0002246;
XX
DE Populus trichocarpa miR169aa stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0001952"
FT /product="ptc-miR169aa"
FT /evidence=not_experimental
FT /similarity="MI0000976"
XX
SQ Sequence 109 BP; 29 A; 21 C; 29 G; 0 T; 30 other;
guagagaucg agccaagaau gacuugucgg caggcuagca auugcuacgu auagagcaau 60
auguaugcua gaaugaguau uccgccaggu cguucuuggc ucaacuuug 109
//
ID ptc-MIR169ab standard; RNA; PTC; 107 BP.
XX
AC MI0002247;
XX
DE Populus trichocarpa miR169ab stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..29
FT /accession="MIMAT0001953"
FT /product="ptc-miR169ab"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 107 BP; 21 A; 24 C; 27 G; 0 T; 35 other;
cauguuuggc agccaaggaa gacuugcccg ucaucgucuu agcugguucc aguguauuac 60
uuagcaccuu uuguuugguu uuggggaagc accuugacua gcugaca 107
//
ID ptc-MIR169ac standard; RNA; PTC; 106 BP.
XX
AC MI0002248;
XX
DE Populus trichocarpa miR169ac stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0001954"
FT /product="ptc-miR169ac"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 106 BP; 21 A; 24 C; 24 G; 0 T; 37 other;
ucuuguuugu agccaaggac gacuugccca caauauguau cgugagcguu uccaauuugc 60
aaccucauac uugguuguuu ugggcagucu ccuuggcuau gcagau 106
//
ID ptc-MIR169ad standard; RNA; PTC; 101 BP.
XX
AC MI0002249;
XX
DE Populus trichocarpa miR169ad stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0001955"
FT /product="ptc-miR169ad"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 101 BP; 25 A; 20 C; 26 G; 0 T; 30 other;
guuguucggu agccaaggac gacuugccca cacuaugaga caagugguua gaauuagcaa 60
cuucuuaauu gguuauggga agucuccuug gcuaugcuga c 101
//
ID ptc-MIR169ae standard; RNA; PTC; 107 BP.
XX
AC MI0002250;
XX
DE Populus trichocarpa miR169ae stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0001956"
FT /product="ptc-miR169ae"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 107 BP; 22 A; 28 C; 25 G; 0 T; 32 other;
cuuguuuggu agccaaggac gacuugccca ccaccaucuu aguugggucc aauauauuac 60
ugggcaccuu ccauuugguu uugggcaagc accuuggcua gcugaca 107
//
ID ptc-MIR169af standard; RNA; PTC; 107 BP.
XX
AC MI0002251;
XX
DE Populus trichocarpa miR169af stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0001957"
FT /product="ptc-miR169af"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 107 BP; 22 A; 28 C; 25 G; 0 T; 32 other;
cuuguuuggu agccaaggac gacuugccca ccaccaucuc aguugggucc aauauauuac 60
ugggcaccuu ccauuugguu uugggcaagc accuuggcua guugaca 107
//
ID ptc-MIR169b standard; RNA; PTC; 113 BP.
XX
AC MI0002252;
XX
DE Populus trichocarpa miR169b stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [2]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001958"
FT /product="ptc-miR169b-5p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
FT /similarity="MI0000976"
FT miRNA 87..106
FT /accession="MIMAT0022898"
FT /product="ptc-miR169b-3p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
XX
SQ Sequence 113 BP; 30 A; 22 C; 25 G; 0 T; 36 other;
aagauugaug cagccaagga ugacuugccg acgacucguu uuugcuucca ucaauauacg 60
cauaauuaag aagagaugaa uccguuggca gguuguucuu ggcuacauuu uuc 113
//
ID ptc-MIR169c standard; RNA; PTC; 102 BP.
XX
AC MI0002253;
XX
DE Populus trichocarpa miR169c stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001959"
FT /product="ptc-miR169c"
FT /evidence=not_experimental
FT /similarity="MI0000976"
XX
SQ Sequence 102 BP; 25 A; 19 C; 25 G; 0 T; 33 other;
aaguuugaug cagccaagga ugacuugccg acgacucaau uuuugcuucc auaugguaga 60
agagaugaau agguuggcag guuuuccuug gcuacauuuu cc 102
//
ID ptc-MIR169d standard; RNA; PTC; 111 BP.
XX
AC MI0002254;
XX
DE Populus trichocarpa miR169d stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001960"
FT /product="ptc-miR169d"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 111 BP; 19 A; 30 C; 34 G; 0 T; 28 other;
gagucgaaug cagccaagga ugacuugccg gcauuuccuc cuaaguagcg agcccggcaa 60
ggcuucuauu uggcacgccc ggccggcggg uuguccuugg cuauauuugg u 111
//
ID ptc-MIR169e standard; RNA; PTC; 166 BP.
XX
AC MI0002255;
XX
DE Populus trichocarpa miR169e stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001961"
FT /product="ptc-miR169e"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 166 BP; 37 A; 33 C; 39 G; 0 T; 57 other;
uaucguggcg cagccaagga ugacuugccg gcaagcuccu cacacguauu uuguuucgag 60
uuucauugau ggcauugcua gauagauaua uaugauuucg uaauucaaac uuuugggcca 120
uugucugguu gaaaugaucg gcaagcuguc cuuggcuaug ucucua 166
//
ID ptc-MIR169f standard; RNA; PTC; 239 BP.
XX
AC MI0002256;
XX
DE Populus trichocarpa miR169f stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001962"
FT /product="ptc-miR169f"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 239 BP; 69 A; 48 C; 41 G; 0 T; 81 other;
uuauguggug cagccaagga ugacuugccg gaauaagcua ugaucaauag cuauagcuau 60
gguauuuuuc auccuagguu uggcuauaua uauauauaua uauagccagu uaauugcuau 120
aaaucucagc acauuuaugu uuuauauguc ugcacacaga cacacacauc auugaauguu 180
gauguuccac cuccuaugau caguagucaa ucggcaaguc aucucuggcu acucaacuc 239
//
ID ptc-MIR169g standard; RNA; PTC; 106 BP.
XX
AC MI0002257;
XX
DE Populus trichocarpa miR169g stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001963"
FT /product="ptc-miR169g"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 106 BP; 21 A; 25 C; 28 G; 0 T; 32 other;
gaguagaaug cagccaagga ugacuugccg gcauuuccuc cuagguagcu agcaagccuu 60
cuauuuggca ugccuguccg gcagguuguc cuuggcuaaa uuuugu 106
//
ID ptc-MIR169h standard; RNA; PTC; 118 BP.
XX
AC MI0002258;
XX
DE Populus trichocarpa miR169h stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001964"
FT /product="ptc-miR169h"
FT /evidence=not_experimental
FT /similarity="MI0000976"
XX
SQ Sequence 118 BP; 30 A; 28 C; 30 G; 0 T; 30 other;
gaguguaauu cagccaagga ugacuugccg gcagcacggg aucucagagc uuaauaacua 60
gaagaucaag gcugucauua cuuuuccggc cggcaaguug cccuuggcua cauuguac 118
//
ID ptc-MIR169i standard; RNA; PTC; 123 BP.
XX
AC MI0002259;
XX
DE Populus trichocarpa miR169i stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001965"
FT /product="ptc-miR169i"
FT /evidence=not_experimental
FT /similarity="MI0000976"
XX
SQ Sequence 123 BP; 28 A; 27 C; 28 G; 0 T; 40 other;
ucuuguuugg uagccaagga ugacuugccu gcuccauugu aggagguuuc cgaaaaaaug 60
cagacaugua uaauuucgaa accccuguuu cguuucaggc agucuccuug gcuaacuuga 120
cug 123
//
ID ptc-MIR169j standard; RNA; PTC; 137 BP.
XX
AC MI0002260;
XX
DE Populus trichocarpa miR169j stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001966"
FT /product="ptc-miR169j"
FT /evidence=not_experimental
FT /similarity="MI0000976"
XX
SQ Sequence 137 BP; 38 A; 27 C; 30 G; 0 T; 42 other;
ucuuguuuga uagccaagga ugacuugccu gcuacuugca agaguuucug caaagagauc 60
agaaccaaau augcauggaa uuauauguaa ugaaacucuu guuugauugc caggcagucu 120
ccuuggcuag ccugaca 137
//
ID ptc-MIR169k standard; RNA; PTC; 203 BP.
XX
AC MI0002261;
XX
DE Populus trichocarpa miR169k stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001967"
FT /product="ptc-miR169k"
FT /evidence=not_experimental
FT /similarity="MI0000183"
XX
SQ Sequence 203 BP; 59 A; 43 C; 55 G; 0 T; 46 other;
ucuuguuugg uagccaagga ugacuugccu guagccuccc ucggauucau gaacacgagc 60
auuuaugugg ugcucaaaag aaaaggagag aaugauccca gcuggcagcg acaaggucaa 120
uccauugaag uagcgagaag caggugauuu auagcuagaa uccacaagag guucccagca 180
aguguccuug gcuaacgaga cgg 203
//
ID ptc-MIR169l standard; RNA; PTC; 143 BP.
XX
AC MI0002262;
XX
DE Populus trichocarpa miR169l stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001968"
FT /product="ptc-miR169l"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 143 BP; 44 A; 25 C; 30 G; 0 T; 44 other;
ucuuguuuga uagccaagga ugacuugccu gcuacauaca agagaucauu augcauaaau 60
agaacgaaau auguacaugg uauuaauuaa ugcagugaaa acucuuguuu gguugccagg 120
cagucuccuu ggcuaagcug aca 143
//
ID ptc-MIR169m standard; RNA; PTC; 119 BP.
XX
AC MI0002263;
XX
DE Populus trichocarpa miR169m stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001969"
FT /product="ptc-miR169m"
FT /evidence=not_experimental
FT /similarity="MI0000976"
XX
SQ Sequence 119 BP; 24 A; 29 C; 30 G; 0 T; 36 other;
ucuuguuugg uagccaagga ugacuugccu gcucccuuca aggagguuuc augaaaugca 60
gacaugaucu cucgaaaccc cuguuggguu ucaggcgguc uccuuggcua acuugacag 119
//
ID ptc-MIR169n standard; RNA; PTC; 107 BP.
XX
AC MI0002264;
XX
DE Populus trichocarpa miR169n stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [2]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001970"
FT /product="ptc-miR169n-5p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
FT /similarity="MI0000981"
FT miRNA 82..101
FT /accession="MIMAT0022899"
FT /product="ptc-miR169n-3p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
XX
SQ Sequence 107 BP; 20 A; 24 C; 33 G; 0 T; 30 other;
agaguggauu ugagccaagg augacuugcc gcagaugcau gguccuugcu gcugaucaca 60
uaccaagggg gguuuugggu ggcaagcauc cuugguucuc cuucgcu 107
//
ID ptc-MIR169o standard; RNA; PTC; 104 BP.
XX
AC MI0002265;
XX
DE Populus trichocarpa miR169o stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001971"
FT /product="ptc-miR169o"
FT /evidence=not_experimental
FT /similarity="MI0000981"
XX
SQ Sequence 104 BP; 26 A; 17 C; 25 G; 0 T; 36 other;
ccuugcgugg aagccaagga ugacuugccu gagaauuuua ggaagguuuc uauaugaaag 60
cuuuuuauua guuuugcagg aagucaaccu uggcuuuccu auag 104
//
ID ptc-MIR169p standard; RNA; PTC; 164 BP.
XX
AC MI0002266;
XX
DE Populus trichocarpa miR169p stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 40..60
FT /accession="MIMAT0001972"
FT /product="ptc-miR169p"
FT /evidence=not_experimental
FT /similarity="MI0000981"
XX
SQ Sequence 164 BP; 33 A; 38 C; 45 G; 0 T; 48 other;
gguguaggag uuuugcauga agagguagag aguagaaugc agccaaggau gacuugccgg 60
cauuuccucc cagcuagcua gcaagccuuc uauuuggcau gccuggccgg caggaugucc 120
uuggcuauau uuuguucucu ucuucucaug ugagacucca ggcc 164
//
ID ptc-MIR169q standard; RNA; PTC; 115 BP.
XX
AC MI0002267;
XX
DE Populus trichocarpa miR169q stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001973"
FT /product="ptc-miR169q"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 115 BP; 22 A; 28 C; 31 G; 0 T; 34 other;
ucuuguuagu uagccaagga cgacuugccu guuccuagca auuugggauu ugcccuggac 60
uaagaggcag gacccucauu ccggguuuca ggcagucucc uuggcuaggu ugaca 115
//
ID ptc-MIR169r standard; RNA; PTC; 119 BP.
XX
AC MI0002268;
XX
DE Populus trichocarpa miR169r stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001974"
FT /product="ptc-miR169r"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 119 BP; 31 A; 20 C; 30 G; 0 T; 38 other;
gaggguuugg uagccaagga ugacuugccu auuuccucca uaaggcuuua aaaagcauga 60
aaugugguuu agagcucaau ugaaggguuc auaggcaguc uacuuugguu auccuagcu 119
//
ID ptc-MIR169s standard; RNA; PTC; 120 BP.
XX
AC MI0002269;
XX
DE Populus trichocarpa miR169s stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001975"
FT /product="ptc-miR169s"
FT /evidence=not_experimental
FT /similarity="MI0000976"
XX
SQ Sequence 120 BP; 29 A; 26 C; 32 G; 0 T; 33 other;
agagugugau ucagccaagg augacuugcc ggcagcaggu aagagcaaag cuccguuuuu 60
ggaaguucaa ggauaucuua acuuuuccgg ccggcaagcu guccuuggcu acauuguacu 120
//
ID ptc-MIR169t standard; RNA; PTC; 108 BP.
XX
AC MI0002270;
XX
DE Populus trichocarpa miR169t stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0001976"
FT /product="ptc-miR169t"
FT /evidence=not_experimental
FT /similarity="MI0000976"
XX
SQ Sequence 108 BP; 25 A; 25 C; 29 G; 0 T; 29 other;
cuagaguccg agccaagaau gacuugccgg caggcuagca uuugcuagcu acagggcaag 60
auguaugcua aagugacauu ccgccagguu guucuuggcu cuacuuug 108
//
ID ptc-MIR169u standard; RNA; PTC; 122 BP.
XX
AC MI0002271;
XX
DE Populus trichocarpa miR169u stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [2]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001977"
FT /product="ptc-miR169u-5p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
FT /similarity="MI0000212"
FT miRNA 97..117
FT /accession="MIMAT0022900"
FT /product="ptc-miR169u-3p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
XX
SQ Sequence 122 BP; 28 A; 26 C; 33 G; 0 T; 35 other;
gaggguuggg uagccaagga cgacuugccu auuuccucca ugggguccug aaaagaauga 60
aauacugucg uucagagcuc auugguaggg uucauaggca gucuccuuug gcuauccuaa 120
cu 122
//
ID ptc-MIR169v standard; RNA; PTC; 110 BP.
XX
AC MI0002272;
XX
DE Populus trichocarpa miR169v stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0001978"
FT /product="ptc-miR169v"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 110 BP; 23 A; 21 C; 28 G; 0 T; 38 other;
cguguuuggu agccaaggau gacuugccca cuccauugaa agaguuuuuc aagcauaugg 60
uaguguagaa cuuuucuuug guucugggca gucaucuugg cuaugcugac 110
//
ID ptc-MIR169w standard; RNA; PTC; 109 BP.
XX
AC MI0002273;
XX
DE Populus trichocarpa miR169w stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..30
FT /accession="MIMAT0001979"
FT /product="ptc-miR169w"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 109 BP; 24 A; 29 C; 30 G; 0 T; 26 other;
cguguuuggu agccaaggau gacuugccca cucuauggaa agaguucuca agcacacggc 60
agagaggacc cuuacuucgg cucugggcag ucaccuuggc uaugcugac 109
//
ID ptc-MIR169x standard; RNA; PTC; 118 BP.
XX
AC MI0002274;
XX
DE Populus trichocarpa miR169x stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001980"
FT /product="ptc-miR169x"
FT /evidence=not_experimental
FT /similarity="MI0000976"
XX
SQ Sequence 118 BP; 28 A; 25 C; 25 G; 0 T; 40 other;
ugcuguuuuc uagccaagga ugacuugcuc guuagcccuu gaaagauguu ucaaauuuag 60
gcugcauaug cucagaaccu uuuucuggcu ucaggcaauc aucuuggcua aaugacag 118
//
ID ptc-MIR169y standard; RNA; PTC; 123 BP.
XX
AC MI0002275;
XX
DE Populus trichocarpa miR169y stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001981"
FT /product="ptc-miR169y"
FT /evidence=not_experimental
FT /similarity="MI0000212"
XX
SQ Sequence 123 BP; 32 A; 27 C; 29 G; 0 T; 35 other;
ucuuguuuag uagccaugga ugaauugccu gcuuccaaaa ugagguguca agccgagaua 60
aacauacaag uuugaucccu cauugggguu cccaggcagu caucagcuug gcuaacuuga 120
cag 123
//
ID ptc-MIR169z standard; RNA; PTC; 118 BP.
XX
AC MI0002276;
XX
DE Populus trichocarpa miR169z stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0001982"
FT /product="ptc-miR169z"
FT /evidence=not_experimental
FT /similarity="MI0000976"
XX
SQ Sequence 118 BP; 30 A; 27 C; 31 G; 0 T; 30 other;
uaguagaaug cagccaagaa ugauuugccg gcgccggcca gcacuuguug caaagcaacu 60
aagcaagggc uucaaauguu uuuggcaccc cggcaaguug uucuuggcua cauuugga 118
//
ID ptc-MIR171a standard; RNA; PTC; 104 BP.
XX
AC MI0002277;
XX
DE Populus trichocarpa miR171a stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [4]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0022901"
FT /product="ptc-miR171a-5p"
FT /evidence=experimental
FT /experiment="miRNAseq [4]"
FT miRNA 75..95
FT /accession="MIMAT0001983"
FT /product="ptc-miR171a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], miRNAseq [4]"
XX
SQ Sequence 104 BP; 35 A; 19 C; 22 G; 0 T; 28 other;
ucagagaaaa cgggauauug guacgguuca aucagaaagu aaugcuccca aaaguauaga 60
guacuauugu uugauugagc cgugccaaua ucacguacac ucau 104
//
ID ptc-MIR171b standard; RNA; PTC; 103 BP.
XX
AC MI0002278;
XX
DE Populus trichocarpa miR171b stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 74..94
FT /accession="MIMAT0001984"
FT /product="ptc-miR171b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 103 BP; 30 A; 16 C; 22 G; 0 T; 35 other;
uuauauauaa cgagauauug gugcgguuca aucagauagu aaugcuccau aagcauagag 60
cucuauuguu ugauugagcc gugccaauau cacguauaug uug 103
//
ID ptc-MIR171c standard; RNA; PTC; 104 BP.
XX
AC MI0002279;
XX
DE Populus trichocarpa miR171c stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 75..95
FT /accession="MIMAT0001985"
FT /product="ptc-miR171c"
FT /evidence=not_experimental
FT /similarity="MI0002277"
XX
SQ Sequence 104 BP; 36 A; 19 C; 23 G; 0 T; 26 other;
aaaagaaagc gauguuggug agguucaauc cgaagacgga uuuacacgug aaaguaauug 60
uaaaauacga ucucagauug agccgcgcca auaucacuuu cuca 104
//
ID ptc-MIR171d standard; RNA; PTC; 105 BP.
XX
AC MI0002280;
XX
DE Populus trichocarpa miR171d stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 75..95
FT /accession="MIMAT0001986"
FT /product="ptc-miR171d"
FT /evidence=not_experimental
FT /similarity="MI0002277"
XX
SQ Sequence 105 BP; 36 A; 19 C; 24 G; 0 T; 26 other;
aaaagaaagc gauguuggug agguucaauc cgaagacgga uuuacacgug aaaguaauug 60
uaaaauacga ucucagauug agccgcgcca auaucacuuu cucag 105
//
ID ptc-MIR171e standard; RNA; PTC; 94 BP.
XX
AC MI0002281;
XX
DE Populus trichocarpa miR171e stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 65..85
FT /accession="MIMAT0001987"
FT /product="ptc-miR171e"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 94 BP; 27 A; 17 C; 21 G; 0 T; 29 other;
guggaaauuu gauguuggca gagcucaauc aaaucaaagc acucaauggu uggguucuuu 60
caucugauug agccgugcca auaucgcauu aaau 94
//
ID ptc-MIR171f standard; RNA; PTC; 130 BP.
XX
AC MI0002282;
XX
DE Populus trichocarpa miR171f stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 101..121
FT /accession="MIMAT0001988"
FT /product="ptc-miR171f"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 130 BP; 34 A; 26 C; 31 G; 0 T; 39 other;
gugucauugc gauguuggcc cgguucacuc agagaaaaga caccauuuuu uuucaagaag 60
aucaucaaag cuugaaagaa uaaugguggu cggucgucuc ugauugagcc gugccaauau 120
cuuagugcuc 130
//
ID ptc-MIR171g standard; RNA; PTC; 100 BP.
XX
AC MI0002283;
XX
DE Populus trichocarpa miR171g stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [3]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0022902"
FT /product="ptc-miR171g-5p"
FT /evidence=experimental
FT /experiment="miRNAseq [3]"
FT miRNA 71..91
FT /accession="MIMAT0001989"
FT /product="ptc-miR171g-3p"
FT /evidence=experimental
FT /experiment="cloned [1], miRNAseq [3]"
XX
SQ Sequence 100 BP; 25 A; 18 C; 24 G; 0 T; 33 other;
gaaagugggg gauguuggga uggcucaauc augucaaauc ucccaaauua ugauguuggg 60
ucuuuuaauc ugauugagcc gugccaauau cacacuucuu 100
//
ID ptc-MIR171h standard; RNA; PTC; 100 BP.
XX
AC MI0002284;
XX
DE Populus trichocarpa miR171h stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [3]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0022903"
FT /product="ptc-miR171h-5p"
FT /evidence=experimental
FT /experiment="miRNAseq [3]"
FT miRNA 71..91
FT /accession="MIMAT0001990"
FT /product="ptc-miR171h-3p"
FT /evidence=experimental
FT /experiment="cloned [1], miRNAseq [3]"
XX
SQ Sequence 100 BP; 28 A; 19 C; 24 G; 0 T; 29 other;
gaaagugggg gauguuggga uggcucaauc auaucaaauc ucccaaacua ugauguuggg 60
ucguuuaauc ugauugagcc gugccaauau cacacuaacu 100
//
ID ptc-MIR171i standard; RNA; PTC; 135 BP.
XX
AC MI0002285;
XX
DE Populus trichocarpa miR171i stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 106..126
FT /accession="MIMAT0001991"
FT /product="ptc-miR171i"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 135 BP; 24 A; 29 C; 24 G; 0 T; 58 other;
gagugacuau gauauuggcc ugguucacuc agaucacgac uucagagcaa agugucuuuc 60
uucuucuucu uuuucuucuu cuucuuguuu uauguucguu ugauuugauu gagccgugcc 120
aauaucucag uacuc 135
//
ID ptc-MIR172a standard; RNA; PTC; 129 BP.
XX
AC MI0002287;
XX
DE Populus trichocarpa miR172a stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 100..120
FT /accession="MIMAT0001993"
FT /product="ptc-miR172a"
FT /evidence=not_experimental
FT /similarity="MI0000215"
XX
SQ Sequence 129 BP; 41 A; 23 C; 27 G; 0 T; 38 other;
uuguuugcag gugcagcauc aucaagauuc acauucaaau agauguaccg aagcuauaca 60
gcuauguagc uagcuagcaa uguauaauca uuguagguga gaaucuugau gaugcugcau 120
cagccauaa 129
//
ID ptc-MIR172b standard; RNA; PTC; 140 BP.
XX
AC MI0002288;
XX
DE Populus trichocarpa miR172b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [3]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0022904"
FT /product="ptc-miR172b-5p"
FT /evidence=experimental
FT /experiment="miRNAseq [3]"
FT miRNA 111..131
FT /accession="MIMAT0001994"
FT /product="ptc-miR172b-3p"
FT /evidence=experimental
FT /experiment="miRNAseq [3]"
FT /similarity="MI0000215"
XX
SQ Sequence 140 BP; 35 A; 24 C; 34 G; 0 T; 47 other;
uuguuugcgg guggagcauc aucaagauuc acaugcaaau gcacggccgg ugauguuaag 60
aguuaaaucu uucuuuguuu cuguucaucu gccaaaguuc uuuggaagug agaaucuuga 120
ugaugcugca ucggcaauaa 140
//
ID ptc-MIR172c standard; RNA; PTC; 128 BP.
XX
AC MI0002289;
XX
DE Populus trichocarpa miR172c stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 99..119
FT /accession="MIMAT0001995"
FT /product="ptc-miR172c"
FT /evidence=not_experimental
FT /similarity="MI0000215"
XX
SQ Sequence 128 BP; 40 A; 23 C; 29 G; 0 T; 36 other;
uuguuugcag gugcagcauc aucaagauuc acauucaaac agauguacgg cagcuagcua 60
gcuagauaga uagacagcaa uguauuucuu ugaaggugag aaucuugaug augcugcauc 120
agccauaa 128
//
ID ptc-MIR172d standard; RNA; PTC; 182 BP.
XX
AC MI0002290;
XX
DE Populus trichocarpa miR172d stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 153..173
FT /accession="MIMAT0001996"
FT /product="ptc-miR172d"
FT /evidence=not_experimental
FT /similarity="MI0002294"
XX
SQ Sequence 182 BP; 43 A; 36 C; 53 G; 0 T; 50 other;
gcauuggcgg augcggcauc aucaagauuc acaagcuuua aggcuugagu gagaggggug 60
gcauacgguc accuccuuua gcaagcuuua aggcuugagu gagaggggug gcauacgguc 120
accuccuuua guccaaaggg uccuuuuuua ugggaaucuu gaugaugcug caucggcaaa 180
ua 182
//
ID ptc-MIR172e standard; RNA; PTC; 133 BP.
XX
AC MI0002291;
XX
DE Populus trichocarpa miR172e stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 104..124
FT /accession="MIMAT0001997"
FT /product="ptc-miR172e"
FT /evidence=not_experimental
FT /similarity="MI0002294"
XX
SQ Sequence 133 BP; 33 A; 28 C; 33 G; 0 T; 39 other;
auauuggccg augcggcagc aucaagauuc acaaacuuua aggcuugagu ugggguggua 60
cacggucccc uccuuuacuc gaaagguucc uuaauuucug augggaaucu ugaugaugcu 120
gcaucggcaa aua 133
//
ID ptc-MIR172f standard; RNA; PTC; 161 BP.
XX
AC MI0002292;
XX
DE Populus trichocarpa miR172f stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 132..152
FT /accession="MIMAT0001998"
FT /product="ptc-miR172f"
FT /evidence=not_experimental
FT /similarity="MI0000215"
XX
SQ Sequence 161 BP; 46 A; 26 C; 31 G; 0 T; 58 other;
uuguuugcgg gugcugcauc accaagauuc acaugcaaau gcauggccga ugauauaugu 60
uagaaauuuu uuuuauauaa aaaagauauc uuucuuucuu ucugaucauc ugccaaaguu 120
cuuuggaagu gagaaucuug augaugcugc aucggcaaua a 161
//
ID ptc-MIR172g standard; RNA; PTC; 143 BP.
XX
AC MI0002293;
XX
DE Populus trichocarpa miR172g stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [4]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0022905"
FT /product="ptc-miR172g-5p"
FT /evidence=experimental
FT /experiment="miRNAseq [4]"
FT miRNA 114..134
FT /accession="MIMAT0001999"
FT /product="ptc-miR172g-3p"
FT /evidence=experimental
FT /experiment="cloned [1], miRNAseq [4]"
XX
SQ Sequence 143 BP; 31 A; 25 C; 37 G; 0 T; 50 other;
cuguuugccu auggagcauc aucaagauuc acaagcuuua uuagggcuag ugugugguga 60
ugaugguggc uuuugguggu cccuuuuuuu caauccaaua gcccuuugaa uugggaaucu 120
ugaugaugcu gcagcggcaa uaa 143
//
ID ptc-MIR172h standard; RNA; PTC; 143 BP.
XX
AC MI0002294;
XX
DE Populus trichocarpa miR172h stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [4]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0022906"
FT /product="ptc-miR172h-5p"
FT /evidence=experimental
FT /experiment="miRNAseq [4]"
FT miRNA 114..134
FT /accession="MIMAT0002000"
FT /product="ptc-miR172h-3p"
FT /evidence=experimental
FT /experiment="cloned [1], miRNAseq [4]"
XX
SQ Sequence 143 BP; 36 A; 27 C; 36 G; 0 T; 44 other;
cuguuugccg auggagcacc aucaagauuc acaaacuuua uuagggcuaa uaagugguga 60
ugaugguggc uuuugguggu cccuucguuu caacccaaua gccauuugaa uugggaaucu 120
ugaugaugcu gcagcggcaa uaa 143
//
ID ptc-MIR172i standard; RNA; PTC; 125 BP.
XX
AC MI0002295;
XX
DE Populus trichocarpa miR172i stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 97..117
FT /accession="MIMAT0002001"
FT /product="ptc-miR172i"
FT /evidence=not_experimental
FT /similarity="MI0000216"
XX
SQ Sequence 125 BP; 34 A; 16 C; 44 G; 0 T; 31 other;
auguggugaa ggcagcaagu cgcggguugu uguuggcgaa augguucugu ugguugaaug 60
gaagaguagc ugaaggaaca guuuuggucg aagaagagaa uccugaugau gcugcaacac 120
agagc 125
//
ID ptc-MIR319a standard; RNA; PTC; 188 BP.
XX
AC MI0002296;
XX
DE Populus trichocarpa miR319a stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 160..179
FT /accession="MIMAT0002002"
FT /product="ptc-miR319a"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 188 BP; 55 A; 36 C; 43 G; 0 T; 54 other;
uaauagcuaa gagagcuuuc uucaguccac ucaugggugg uaguaggauu uaauuagcug 60
ccgacucauu cauccaaaua cugaguuaaa ggacaaggag auuacccagu aaaugaguga 120
augaugcggg agacaaauug aauccuaagc uuccuguacu uggacugaag ggagcucccu 180
uuccuuuu 188
//
ID ptc-MIR319b standard; RNA; PTC; 185 BP.
XX
AC MI0002297;
XX
DE Populus trichocarpa miR319b stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 157..176
FT /accession="MIMAT0002003"
FT /product="ptc-miR319b"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 185 BP; 61 A; 30 C; 34 G; 0 T; 60 other;
uaauagauaa gagagcuuuu uucgguccac uuauagauag uaauaugauu uaauuaguua 60
ccgacucauu cauccaaaua cugaguuaug agcuaagauu acccaguaaa ugaaugagug 120
augcgggaga caaauuaaau cuuaaacuuc cuaucauugg acugaaggga gcucccuuua 180
cuguu 185
//
ID ptc-MIR319c standard; RNA; PTC; 196 BP.
XX
AC MI0002298;
XX
DE Populus trichocarpa miR319c stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 168..187
FT /accession="MIMAT0002004"
FT /product="ptc-miR319c"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 196 BP; 49 A; 35 C; 51 G; 0 T; 61 other;
aaugguuuaa gagagcuuuc uucaguccac ucauggacgg gcgaaggguu uggauuagcu 60
gccgacucau ucauucaaac acaguagaaa uuaagggagc aguauggcug cuauugugaa 120
ugugugaaug augcgggaga uaaauuucau ccuuuucuuc ucugugcuug gacugaaggg 180
agcucccuuu aaucgu 196
//
ID ptc-MIR319d standard; RNA; PTC; 193 BP.
XX
AC MI0002299;
XX
DE Populus trichocarpa miR319d stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 165..184
FT /accession="MIMAT0002005"
FT /product="ptc-miR319d"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 193 BP; 45 A; 39 C; 51 G; 0 T; 58 other;
aaugguuuaa cagagcuucc uucaguccac ucauggacgg gcgaaggguu uggauuagcu 60
gccgacucau ucauucaaac acaguagaca aggaguggca gcggcugcua uugugaaugu 120
gugaaugacg cgggagauua auuucauccu uuucuucucu gugcuuggac ugaagggagc 180
ucccuuuaau ugu 193
//
ID ptc-MIR319e standard; RNA; PTC; 192 BP.
XX
AC MI0002300;
XX
DE Populus trichocarpa miR319e stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 164..183
FT /accession="MIMAT0002006"
FT /product="ptc-miR319e"
FT /evidence=not_experimental
FT /similarity="MI0002298"
XX
SQ Sequence 192 BP; 40 A; 44 C; 58 G; 0 T; 50 other;
ggaggggcug aggugcuccu uuuaguccaa uacggagggc ugagaagcgg cuagagcugc 60
caucucaugc auuuaggcaa ugcuuaacau uugacgaaga gagguuaagc uuggccacuu 120
gcauggugug ggagcaacuc cuuccgcaug cuuugcucgc ccauuggacu gaagggagcu 180
ccugguuuua cc 192
//
ID ptc-MIR319f standard; RNA; PTC; 202 BP.
XX
AC MI0002301;
XX
DE Populus trichocarpa miR319f stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 174..193
FT /accession="MIMAT0002007"
FT /product="ptc-miR319f"
FT /evidence=not_experimental
FT /similarity="MI0002298"
XX
SQ Sequence 202 BP; 50 A; 38 C; 52 G; 0 T; 62 other;
uaaugguggg agagagcuuc cuucagccca cucauggaua ggagaaaggg guugaauuag 60
cugccgacuc auucauucaa gcaccaguag aaaaagggga auggauauuc uuuugcuacu 120
gugauugugu gaaugaugcg ggagauaauu uuacaucccc ucuuuuucug ugcuuggacu 180
gaagggagcu ccuuccuucu au 202
//
ID ptc-MIR319g standard; RNA; PTC; 204 BP.
XX
AC MI0002302;
XX
DE Populus trichocarpa miR319g stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 176..195
FT /accession="MIMAT0002008"
FT /product="ptc-miR319g"
FT /evidence=not_experimental
FT /similarity="MI0002298"
XX
SQ Sequence 204 BP; 47 A; 43 C; 51 G; 0 T; 63 other;
uaaucguggg agagagcuuc uuucagccca cucguggaua ggacaaaggg guugaacuag 60
cugccgacuc auucauucaa gcacuaguag aaaaaaaggc gaacgguguu ucuuuugcua 120
cugugauugu gugaaugaug cgggagauaa uuuuccaucc ucuccuuuuc ugugcuugga 180
cugaagggag cuccuuccuu cucu 204
//
ID ptc-MIR319h standard; RNA; PTC; 195 BP.
XX
AC MI0002303;
XX
DE Populus trichocarpa miR319h stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 165..184
FT /accession="MIMAT0002009"
FT /product="ptc-miR319h"
FT /evidence=not_experimental
FT /similarity="MI0002298"
XX
SQ Sequence 195 BP; 43 A; 42 C; 56 G; 0 T; 54 other;
uuguaggggc uaaagugcuc cuuuuagucc aauaaggagg gcugagaagc ggcuagagcu 60
gccaucucau gcauuuaggc aaugcuuaac auuuggcaaa gagguuuaag cuuggccagg 120
ugcauggugu gggagcaacu ccuuccgcau gcuuuguucg cccauuggac ugaagggagc 180
uccugguuuu accac 195
//
ID ptc-MIR319i standard; RNA; PTC; 89 BP.
XX
AC MI0002304;
XX
DE Populus trichocarpa miR319i stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..80
FT /accession="MIMAT0002010"
FT /product="ptc-miR319i"
FT /evidence=not_experimental
FT /similarity="MI0002296"
XX
SQ Sequence 89 BP; 19 A; 19 C; 24 G; 0 T; 27 other;
gugcagaaau ggagguuccu uccagccuca agcaucuuua agaugguggc gaugucuauu 60
uugggcugaa gggagcuccc aauucuucu 89
//
ID ptc-MIR390a standard; RNA; PTC; 119 BP.
XX
AC MI0002305;
XX
DE Populus trichocarpa miR390a stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0002011"
FT /product="ptc-miR390a"
FT /evidence=not_experimental
FT /similarity="MI0001001"
XX
SQ Sequence 119 BP; 35 A; 23 C; 27 G; 0 T; 34 other;
agaaucuguu aagcucagga gggauagcgc caugagcaug acaaagucua uguuugaguu 60
aaucucaaca aaaucaaucc agucaucagu ggcgcuaucu auccugaguu cuauggguu 119
//
ID ptc-MIR390b standard; RNA; PTC; 106 BP.
XX
AC MI0002306;
XX
DE Populus trichocarpa miR390b stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0002012"
FT /product="ptc-miR390b"
FT /evidence=not_experimental
FT /similarity="MI0001001"
XX
SQ Sequence 106 BP; 22 A; 20 C; 26 G; 0 T; 38 other;
agaaucuguu aagcucagga gggauagcgc ccuaaggaua aucaugggcu cuuuuuaugu 60
gguuuuugau ucucaguggc gcuauccauc cugaguuuca uugcuu 106
//
ID ptc-MIR390c standard; RNA; PTC; 123 BP.
XX
AC MI0002307;
XX
DE Populus trichocarpa miR390c stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0002013"
FT /product="ptc-miR390c"
FT /evidence=not_experimental
FT /similarity="MI0001001"
XX
SQ Sequence 123 BP; 33 A; 19 C; 31 G; 0 T; 40 other;
aggaucuguu aagcucagga gggauagcgc caugagcuga ugauaaguug auguuugaug 60
gguuaaucuc aacauaauca aucuagucau uaguggcgcu aucuauccug aguucuauag 120
guu 123
//
ID ptc-MIR390d standard; RNA; PTC; 106 BP.
XX
AC MI0002308;
XX
DE Populus trichocarpa miR390d stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [2]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0002014"
FT /product="ptc-miR390d-5p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
FT /similarity="MI0001000"
FT miRNA 80..100
FT /accession="MIMAT0022907"
FT /product="ptc-miR390d-3p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
XX
SQ Sequence 106 BP; 23 A; 20 C; 26 G; 0 T; 37 other;
agaaucuguu aagcucagga gggauagcgc ccuaaggaua accaugggcu cuuuuuauuu 60
gguuuuugac uaucaguggc gcuauccauc cugaguuuua cugguu 106
//
ID ptc-MIR393a standard; RNA; PTC; 85 BP.
XX
AC MI0002309;
XX
DE Populus trichocarpa miR393a stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [2]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0002015"
FT /product="ptc-miR393a-5p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
FT /similarity="MI0001003"
FT miRNA 59..79
FT /accession="MIMAT0022908"
FT /product="ptc-miR393a-3p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
XX
SQ Sequence 85 BP; 19 A; 23 C; 18 G; 0 T; 25 other;
agaggaggca uccaaaggga ucgcauugau cccaaguguc ugucccccau aauuuuggau 60
caugcuaucc cuuuggauuc cuccu 85
//
ID ptc-MIR393b standard; RNA; PTC; 84 BP.
XX
AC MI0002310;
XX
DE Populus trichocarpa miR393b stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [2]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0002016"
FT /product="ptc-miR393b-5p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
FT /similarity="MI0001003"
FT miRNA 58..78
FT /accession="MIMAT0022909"
FT /product="ptc-miR393b-3p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
XX
SQ Sequence 84 BP; 18 A; 22 C; 20 G; 0 T; 24 other;
agaggaggca uccaaaggga ucgcauugau cccgaguguc ccuggccaua auuuuggauc 60
augcuauccc uuuggauucc uccu 84
//
ID ptc-MIR393c standard; RNA; PTC; 107 BP.
XX
AC MI0002311;
XX
DE Populus trichocarpa miR393c stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0002017"
FT /product="ptc-miR393c"
FT /evidence=not_experimental
FT /similarity="MI0001004"
XX
SQ Sequence 107 BP; 26 A; 19 C; 22 G; 0 T; 40 other;
gcuggagugu uccaaaggga ucgcauugau cuaaugacuc ucgaugucua aaucauauua 60
auguuuaguu uuuucguugg aucaugcgau cccuuaggaa uuuucca 107
//
ID ptc-MIR394a standard; RNA; PTC; 147 BP.
XX
AC MI0002313;
XX
DE Populus trichocarpa miR394a stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [2]
RX PUBMED; 18363789.
RA Lu S, Sun YH, Chiang VL;
RT "Stress-responsive microRNAs in Populus";
RL Plant J. 55:131-151(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 38..57
FT /accession="MIMAT0002019"
FT /product="ptc-miR394a-5p"
FT /evidence=not_experimental
FT /similarity="MI0001006"
FT miRNA 117..136
FT /accession="MIMAT0006783"
FT /product="ptc-miR394a-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 147 BP; 29 A; 32 C; 33 G; 0 T; 53 other;
ucaugugggu uuugcaaagg guuucuuaca gaguuuuuug gcauucuguc caccuccauc 60
uguagaaacu acaaguuguu cuacuuucug gaggugggca uacugccaac ugagcucugu 120
uggucucucu uuguaaaacc cucguga 147
//
ID ptc-MIR394b standard; RNA; PTC; 147 BP.
XX
AC MI0002314;
XX
DE Populus trichocarpa miR394b stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [2]
RX PUBMED; 18363789.
RA Lu S, Sun YH, Chiang VL;
RT "Stress-responsive microRNAs in Populus";
RL Plant J. 55:131-151(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 38..57
FT /accession="MIMAT0002020"
FT /product="ptc-miR394b-5p"
FT /evidence=not_experimental
FT /similarity="MI0001006"
FT miRNA 117..136
FT /accession="MIMAT0006784"
FT /product="ptc-miR394b-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 147 BP; 34 A; 31 C; 30 G; 0 T; 52 other;
ucauguggau uuagcaaagg guuucuuaca gaguuuauug gcauucuguc caccuccuau 60
cuuuagaaau uagaauaucu cuuucauaug gaggugggca uacugccaac cgagcucugu 120
uggucucucu uuguaaaacc cucguga 147
//
ID ptc-MIR395a standard; RNA; PTC; 226 BP.
XX
AC MI0002315;
XX
DE Populus trichocarpa miR395a stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 198..218
FT /accession="MIMAT0002021"
FT /product="ptc-miR395a"
FT /evidence=not_experimental
FT /similarity="MI0001012"
XX
SQ Sequence 226 BP; 55 A; 37 C; 56 G; 0 T; 78 other;
ggucacccug aguuccuccu agcuucuuca guacccgugg aaagcuaaug cuacaauuau 60
cuugagcugg uaagacuggc aggugucaga uguggaugug uuaaagguaa uauuauugau 120
uauuuacggc gccauucaag uauuuguucu acuguuagag gauuuaauca aguauaugug 180
guauuacucc ugauuugcug aaggguuugg aggaacucua ggugcu 226
//
ID ptc-MIR395b standard; RNA; PTC; 98 BP.
XX
AC MI0002316;
XX
DE Populus trichocarpa miR395b stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 69..89
FT /accession="MIMAT0002022"
FT /product="ptc-miR395b"
FT /evidence=not_experimental
FT /similarity="MI0001010"
XX
SQ Sequence 98 BP; 20 A; 26 C; 24 G; 0 T; 28 other;
guguccccua gaguucccuu gagcacuuca cugggacccu ucagaccgaa agaguauuau 60
cuuucccacu gaaguguuug ggggaacucc ugguguca 98
//
ID ptc-MIR395c standard; RNA; PTC; 101 BP.
XX
AC MI0002317;
XX
DE Populus trichocarpa miR395c stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 72..92
FT /accession="MIMAT0002023"
FT /product="ptc-miR395c"
FT /evidence=not_experimental
FT /similarity="MI0001010"
XX
SQ Sequence 101 BP; 24 A; 20 C; 24 G; 0 T; 33 other;
guguccccua gaguuccucu gagcacuuca uugggaaucu ucgauuaaau gaaagaguau 60
uaucauuccu acugaagugu uugggggaac uccugguguc a 101
//
ID ptc-MIR395d standard; RNA; PTC; 101 BP.
XX
AC MI0002318;
XX
DE Populus trichocarpa miR395d stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 72..92
FT /accession="MIMAT0002024"
FT /product="ptc-miR395d"
FT /evidence=not_experimental
FT /similarity="MI0001010"
XX
SQ Sequence 101 BP; 24 A; 22 C; 24 G; 0 T; 31 other;
guguccccua gaguuccucu gagcacuuca cugggaauuu ccgaucaaau gaaagaguau 60
uaucauuccu acugaagugu uugggggaac uccugguguc a 101
//
ID ptc-MIR395e standard; RNA; PTC; 113 BP.
XX
AC MI0002319;
XX
DE Populus trichocarpa miR395e stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 84..104
FT /accession="MIMAT0002025"
FT /product="ptc-miR395e"
FT /evidence=not_experimental
FT /similarity="MI0001012"
XX
SQ Sequence 113 BP; 20 A; 30 C; 30 G; 0 T; 33 other;
cugucccccg gaguuucccu gaccacuuca cuggggcuau aauucuacuc uucguguuua 60
aggguagagg caacccuucc ucacugaagu guuuggggga acucugggug gca 113
//
ID ptc-MIR395f standard; RNA; PTC; 113 BP.
XX
AC MI0002320;
XX
DE Populus trichocarpa miR395f stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 84..104
FT /accession="MIMAT0002026"
FT /product="ptc-miR395f"
FT /evidence=not_experimental
FT /similarity="MI0001012"
XX
SQ Sequence 113 BP; 20 A; 30 C; 30 G; 0 T; 33 other;
cugucccccg gaguuucccu gaccacuuca cuggggcuau aauucuacuc uucguguuua 60
aggguagagg caacccuucc ucacugaagu guuuggggga acucugggug gca 113
//
ID ptc-MIR395g standard; RNA; PTC; 102 BP.
XX
AC MI0002321;
XX
DE Populus trichocarpa miR395g stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 73..93
FT /accession="MIMAT0002027"
FT /product="ptc-miR395g"
FT /evidence=not_experimental
FT /similarity="MI0001010"
XX
SQ Sequence 102 BP; 21 A; 24 C; 25 G; 0 T; 32 other;
guguccccua gaguuccucu gagcacuuca uuggggaucu uccaucgacc ugaaagagua 60
uuaucauucc uacugaagug uuugggggaa cuccuggugu ca 102
//
ID ptc-MIR395h standard; RNA; PTC; 102 BP.
XX
AC MI0002322;
XX
DE Populus trichocarpa miR395h stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 73..93
FT /accession="MIMAT0002028"
FT /product="ptc-miR395h"
FT /evidence=not_experimental
FT /similarity="MI0001010"
XX
SQ Sequence 102 BP; 21 A; 24 C; 25 G; 0 T; 32 other;
guguccccua gaguuccucu gagcacuuca uuggggaucu uccaucgacc ugaaagagua 60
uuaucauucc uacugaagug uuugggggaa cuccuggugu ca 102
//
ID ptc-MIR395i standard; RNA; PTC; 102 BP.
XX
AC MI0002323;
XX
DE Populus trichocarpa miR395i stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 73..93
FT /accession="MIMAT0002029"
FT /product="ptc-miR395i"
FT /evidence=not_experimental
FT /similarity="MI0001010"
XX
SQ Sequence 102 BP; 22 A; 24 C; 25 G; 0 T; 31 other;
guguccccua gaguuccucu gagcacuuca auggggaucu uccaucgacc ugaaagagua 60
uuaucauucc uacugaagug uuugggggaa cuccuggugu ca 102
//
ID ptc-MIR395j standard; RNA; PTC; 102 BP.
XX
AC MI0002324;
XX
DE Populus trichocarpa miR395j stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 73..93
FT /accession="MIMAT0002030"
FT /product="ptc-miR395j"
FT /evidence=not_experimental
FT /similarity="MI0001010"
XX
SQ Sequence 102 BP; 21 A; 24 C; 25 G; 0 T; 32 other;
guguccccua gaguuccucu gagcacuuca uuggggaucu uccaucgacc ugaaagagua 60
uuaucauucc uacugaagug uuugggggaa cuccuggugu ca 102
//
ID ptc-MIR396a standard; RNA; PTC; 123 BP.
XX
AC MI0002325;
XX
DE Populus trichocarpa miR396a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0002031"
FT /product="ptc-miR396a"
FT /evidence=not_experimental
FT /similarity="MI0001014"
XX
SQ Sequence 123 BP; 29 A; 20 C; 26 G; 0 T; 48 other;
cuugguauuc uuccacagcu uucuugaacu gcaccuauuu gaauauuguu guugauguug 60
ccgugcaugu acauaugaca uuguauuuuu guugcgguuc aauaaagcug ugggaagaua 120
caa 123
//
ID ptc-MIR396b standard; RNA; PTC; 132 BP.
XX
AC MI0002326;
XX
DE Populus trichocarpa miR396b stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0002032"
FT /product="ptc-miR396b"
FT /evidence=not_experimental
FT /similarity="MI0001013"
XX
SQ Sequence 132 BP; 33 A; 23 C; 26 G; 0 T; 50 other;
cuuuguauuc uuccacagcu uucuugaacu gcaccuauua gauuaauguu gauguuguug 60
ugcgauaugc caugaccaua ugacauugua uucauuuuug cugcgguuca auaaagcugu 120
gggaagauac aa 132
//
ID ptc-MIR396c standard; RNA; PTC; 102 BP.
XX
AC MI0002327;
XX
DE Populus trichocarpa miR396c stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0002033"
FT /product="ptc-miR396c"
FT /evidence=not_experimental
FT /similarity="MI0001014"
XX
SQ Sequence 102 BP; 30 A; 21 C; 21 G; 0 T; 30 other;
ugccauguuu uuccacagcu uucuugaacu uccuagagcc uagaggugcu gcuagcuaua 60
cauauaacuu aagaaguuca agaaagccgu ggaauagcau ga 102
//
ID ptc-MIR396d standard; RNA; PTC; 166 BP.
XX
AC MI0002328;
XX
DE Populus trichocarpa miR396d stem-loop
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..40
FT /accession="MIMAT0002034"
FT /product="ptc-miR396d"
FT /evidence=not_experimental
FT /similarity="MI0001014"
XX
SQ Sequence 166 BP; 44 A; 34 C; 33 G; 0 T; 55 other;
gaaaguccug gucaugcuuu uccacagcuu ucuugaacuu ccuugccaug cuuaacuugu 60
guguguguau agaucacuau auaucuguau aguuauacac auuuagcuag cuagcaccau 120
ugaagcucaa gaaagccgug ggagaacaug gcaacucagg auuuuu 166
//
ID ptc-MIR396e standard; RNA; PTC; 145 BP.
XX
AC MI0002329;
XX
DE Populus trichocarpa miR396e stem-loop
XX
RN [1]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [4]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0002035"
FT /product="ptc-miR396e-5p"
FT /evidence=experimental
FT /experiment="miRNAseq [4]"
FT /similarity="MI0001014"
FT miRNA 120..139
FT /accession="MIMAT0022910"
FT /product="ptc-miR396e-3p"
FT /evidence=experimental
FT /experiment="miRNAseq [4]"
XX
SQ Sequence 145 BP; 41 A; 27 C; 28 G; 0 T; 49 other;
ggucaugcuu uuccacagcu uucuugaacu ucuuugccuu gcuuaaucug uguauauaua 60
gaucacuaca uguacagcuc cuauauauau aaauauaugu auguauagcg ccauggaagc 120
ucaagaaagc ugugggagaa caugg 145
//
ID ptc-MIR396f standard; RNA; PTC; 127 BP.
XX
AC MI0002330;
XX
DE Populus trichocarpa miR396f stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0002036"
FT /product="ptc-miR396f"
FT /evidence=not_experimental
FT /similarity="MI0001702"
XX
SQ Sequence 127 BP; 41 A; 20 C; 24 G; 0 T; 42 other;
cuuggugauu uuccacggcu uucuugaacu guauauauua ucaauggcuu uuuacaagac 60
uggaagaugg uuuccaugga gaagaauugu cacaaaaaca guucaagaaa gcccugaaaa 120
auuauuu 127
//
ID ptc-MIR396g standard; RNA; PTC; 168 BP.
XX
AC MI0002331;
XX
DE Populus trichocarpa miR396g stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [2]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0002037"
FT /product="ptc-miR396g-5p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
FT /similarity="MI0001014"
FT miRNA 143..163
FT /accession="MIMAT0022911"
FT /product="ptc-miR396g-3p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
XX
SQ Sequence 168 BP; 46 A; 34 C; 31 G; 0 T; 57 other;
uugcaugcuu uuccacggcu uucuugaacu uggcacucaa gagacaugag aguaaagggc 60
uaggcuuucu uuucuauucc uuucguucuu ugaaauuuuc cuguucaaag aauccauaca 120
uaucagucuc uuuaguacaa agcucaagaa agccguggga aaauauga 168
//
ID ptc-MIR397a standard; RNA; PTC; 120 BP.
XX
AC MI0002332;
XX
DE Populus trichocarpa miR397a stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0002038"
FT /product="ptc-miR397a"
FT /evidence=not_experimental
FT /similarity="MI0001015"
XX
SQ Sequence 120 BP; 29 A; 28 C; 23 G; 0 T; 40 other;
uggagaacca ucauugagug cagcguugau gaaauccucc auuuugugcu auuaaacugu 60
uaccaacccu uuauggggca uggcaucauu ucaccagcgc ugcauucaau cauguuuuuc 120
//
ID ptc-MIR397b standard; RNA; PTC; 114 BP.
XX
AC MI0002333;
XX
DE Populus trichocarpa miR397b stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0002039"
FT /product="ptc-miR397b"
FT /evidence=not_experimental
FT /similarity="MI0001016"
XX
SQ Sequence 114 BP; 27 A; 25 C; 20 G; 0 T; 42 other;
uaauuauaca ccauugagug cagcguugau gaaauucucu uguuagcuua cuuagcuauu 60
uucucacgau ggcguggaau cauuucacca gcgcugcauu caaccauguu uuuc 114
//
ID ptc-MIR397c standard; RNA; PTC; 71 BP.
XX
AC MI0002334;
XX
DE Populus trichocarpa miR397c stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0002040"
FT /product="ptc-miR397c"
FT /evidence=not_experimental
FT /similarity="MI0001015"
XX
SQ Sequence 71 BP; 22 A; 9 C; 14 G; 0 T; 26 other;
caaguuuagu ucaaugagug gagcuuugau gacaauuugu uuuaaaagcu cuacuguauu 60
cgaacaauau g 71
//
ID ptc-MIR398a standard; RNA; PTC; 109 BP.
XX
AC MI0002335;
XX
DE Populus trichocarpa miR398a stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 80..100
FT /accession="MIMAT0002041"
FT /product="ptc-miR398a"
FT /evidence=not_experimental
FT /similarity="MI0001017"
XX
SQ Sequence 109 BP; 26 A; 28 C; 31 G; 0 T; 24 other;
guacacccca gaggaguggc uccagagaac acaggggguu gguuuucuag cuguaagcua 60
caagauggac aaagcacucu guguucucag gucaccccuu uggggcacc 109
//
ID ptc-MIR398b standard; RNA; PTC; 85 BP.
XX
AC MI0002336;
XX
DE Populus trichocarpa miR398b stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..76
FT /accession="MIMAT0002042"
FT /product="ptc-miR398b"
FT /evidence=not_experimental
FT /similarity="MI0001018"
XX
SQ Sequence 85 BP; 12 A; 26 C; 26 G; 0 T; 21 other;
aggguuccga caggagcggc cuuggcucac auguggcggc auccaaugua cuucaugugu 60
ucucaggucg ccccugccgg gcuuc 85
//
ID ptc-MIR398c standard; RNA; PTC; 97 BP.
XX
AC MI0002337;
XX
DE Populus trichocarpa miR398c stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [2]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..33
FT /accession="MIMAT0022912"
FT /product="ptc-miR398c-5p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
FT miRNA 68..88
FT /accession="MIMAT0002043"
FT /product="ptc-miR398c-3p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
FT /similarity="MI0001018"
XX
SQ Sequence 97 BP; 18 A; 28 C; 26 G; 0 T; 25 other;
aggauuccua caggagcgac cugaaaucac augugggcug cacccuccug gguuaucuug 60
agcaacaugu guucucaggu cgccccugcc gggcuuu 97
//
ID ptc-MIR399a standard; RNA; PTC; 120 BP.
XX
AC MI0002338;
XX
DE Populus trichocarpa miR399a stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 91..111
FT /accession="MIMAT0002044"
FT /product="ptc-miR399a"
FT /evidence=not_experimental
FT /similarity="MI0001025"
XX
SQ Sequence 120 BP; 35 A; 33 C; 26 G; 0 T; 26 other;
gcaauaauua ccgggcaauu acucuuuugg cagcuggcca cucaacggcg gcaggugauc 60
aaauucacca augcaaacaa guaagcucgc ugccaaagga gauuugcccc gcaauucauc 120
//
ID ptc-MIR399b standard; RNA; PTC; 126 BP.
XX
AC MI0002339;
XX
DE Populus trichocarpa miR399b stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 97..117
FT /accession="MIMAT0002045"
FT /product="ptc-miR399b"
FT /evidence=not_experimental
FT /similarity="MI0001020"
XX
SQ Sequence 126 BP; 32 A; 33 C; 31 G; 0 T; 30 other;
ggugcaguug cauuacaggg caagcuucca uuggcaugca gccacuaaga cacgcaauau 60
cuaacacuug augcauuccu guagagugcg gcgccaugcc aaaggagauu ugcccggcaa 120
uucuuc 126
//
ID ptc-MIR399d standard; RNA; PTC; 114 BP.
XX
AC MI0002341;
XX
DE Populus trichocarpa miR399d stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 85..105
FT /accession="MIMAT0002047"
FT /product="ptc-miR399d"
FT /evidence=not_experimental
FT /similarity="MI0001023"
XX
SQ Sequence 114 BP; 28 A; 27 C; 27 G; 0 T; 32 other;
ggaugcauua cugggcaauu cuucuguugg cagcugguga cucauacugc acuagcugag 60
auuaagcagc aagaguuugc ucacugccaa agaagauuug ccccgcaauu ccuu 114
//
ID ptc-MIR399f standard; RNA; PTC; 101 BP.
XX
AC MI0002343;
XX
DE Populus trichocarpa miR399f stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 72..92
FT /accession="MIMAT0002049"
FT /product="ptc-miR399f"
FT /evidence=not_experimental
FT /similarity="MI0001023"
XX
SQ Sequence 101 BP; 32 A; 21 C; 19 G; 0 T; 29 other;
uaaagaauaa cagggcuuua uccuccuuug gcaaacagaa cauggaaaua aaugccugca 60
uauuucuguu uugccaaagg agaauugccc ugccauucga u 101
//
ID ptc-MIR399g standard; RNA; PTC; 94 BP.
XX
AC MI0002344;
XX
DE Populus trichocarpa miR399g stem-loop
XX
RN [1]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 65..85
FT /accession="MIMAT0002050"
FT /product="ptc-miR399g"
FT /evidence=not_experimental
FT /similarity="MI0001023"
XX
SQ Sequence 94 BP; 25 A; 23 C; 21 G; 0 T; 25 other;
ugaugaauaa cugugcaauu cuccuuuggc agacguauau ggcguucgga caccaacuuu 60
ggacugccaa aggagaauug cccugccauu caac 94
//
ID ptc-MIR399h standard; RNA; PTC; 132 BP.
XX
AC MI0002345;
XX
DE Populus trichocarpa miR399h stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 103..123
FT /accession="MIMAT0002051"
FT /product="ptc-miR399h"
FT /evidence=not_experimental
FT /similarity="MI0001021"
XX
SQ Sequence 132 BP; 33 A; 31 C; 33 G; 0 T; 35 other;
aaaccaguug cagggcaccu cucuuccuug gcagacagua cuaauggugc cuauagcuuc 60
aagcugagag gguaugcgag aaucuugauc ccaauauagg cuugccaaag gagaguuucc 120
cugugaccgu uu 132
//
ID ptc-MIR399i standard; RNA; PTC; 108 BP.
XX
AC MI0002346;
XX
DE Populus trichocarpa miR399i stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 79..99
FT /accession="MIMAT0002052"
FT /product="ptc-miR399i"
FT /evidence=not_experimental
FT /similarity="MI0001022"
XX
SQ Sequence 108 BP; 27 A; 20 C; 27 G; 0 T; 34 other;
aaaccaguug uaggguaccu cuuacuuggc aagcaauggu gauuguugca aacauugcag 60
aauuugaucu cggugucuug ccaaaggaga guugcccuau gacuguuu 108
//
ID ptc-MIR399j standard; RNA; PTC; 112 BP.
XX
AC MI0002347;
XX
DE Populus trichocarpa miR399j stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 82..102
FT /accession="MIMAT0002053"
FT /product="ptc-miR399j"
FT /evidence=not_experimental
FT /similarity="MI0001020"
XX
SQ Sequence 112 BP; 29 A; 27 C; 24 G; 0 T; 32 other;
ugcauuacag ggcaagaccu ccauuggcag gcagccacua aagcaugcau uuaaauuaug 60
cguucuuuua agugugcccu cugccaaagg agauuugucc ggcaaaucuu cu 112
//
ID ptc-MIR399c standard; RNA; PTC; 94 BP.
XX
AC MI0002348;
XX
DE Populus trichocarpa miR399c stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 66..86
FT /accession="MIMAT0002054"
FT /product="ptc-miR399c"
FT /evidence=not_experimental
FT /similarity="MI0001023"
XX
SQ Sequence 94 BP; 29 A; 20 C; 19 G; 0 T; 26 other;
ggagcauugc ugagcaaauu uccuuuggca gauaccacaa guaacaagag cuuaaguugu 60
ucauuugcca aaggagauuu gcucaccaau ucca 94
//
ID ptc-MIR399e standard; RNA; PTC; 109 BP.
XX
AC MI0002349;
XX
DE Populus trichocarpa miR399e stem-loop
XX
RN [1]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 81..101
FT /accession="MIMAT0002055"
FT /product="ptc-miR399e"
FT /evidence=not_experimental
FT /similarity="MI0001022"
XX
SQ Sequence 109 BP; 29 A; 23 C; 20 G; 0 T; 37 other;
aacuaguuaa auggcuucuc uucuuuggca ggugauggua uagauuacaa cuuauagcuu 60
uaaucuagua uucaguuacc cgccaaagga gaguugcccu cuaacuucc 109
//
ID ptc-MIR403a standard; RNA; PTC; 132 BP.
XX
AC MI0002350;
XX
DE Populus trichocarpa miR403a stem-loop
XX
RN [1]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [2]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [3]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 103..123
FT /accession="MIMAT0002056"
FT /product="ptc-miR403a"
FT /evidence=not_experimental
FT /similarity="MI0001072"
XX
SQ Sequence 132 BP; 52 A; 24 C; 18 G; 0 T; 38 other;
aggcauauuu cagguuugug caugaaucua auauagcuaa aaaaauccca ucaaacacaa 60
auuaaaauac uagauagcaa ucagcacuag uuuaguauag uauuagauuc acgcacaaac 120
ucguaaucug uc 132
//
ID ptc-MIR403b standard; RNA; PTC; 100 BP.
XX
AC MI0002351;
XX
DE Populus trichocarpa miR403b stem-loop
XX
RN [1]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [2]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
FH Key Location/Qualifiers
FH
FT miRNA 71..91
FT /accession="MIMAT0002057"
FT /product="ptc-miR403b"
FT /evidence=not_experimental
FT /similarity="MI0001072"
XX
SQ Sequence 100 BP; 24 A; 30 C; 17 G; 0 T; 29 other;
acucauaucu cuaguuuguu cguggaucug acgccaucac aaccguucau uucacgacca 60
uccaauggcg uuagauucac gcacaaacuc gcgaucuguc 100
//
ID ptc-MIR408 standard; RNA; PTC; 105 BP.
XX
AC MI0002352;
XX
DE Populus trichocarpa miR408 stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 15916721.
RA Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA;
RT "Identification and characterization of new plant microRNAs using EST
RT analysis";
RL Cell Res. 15:336-360(2005).
XX
RN [3]
RA Dezulian T, Palatnik JF, Huson DH, Weigel D;
RT "Conservation and divergence of microRNA families in plants";
RL http://genomebiology.com/2005/6/11/p13 (2005).
XX
RN [4]
RX PUBMED; 16973872.
RA Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U,
RA Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A,
RA Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov
RA V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho
RA PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S,
RA Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S,
RA Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J,
RA Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B,
RA Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M,
RA Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick
RA R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC,
RA Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR,
RA Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G,
RA Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P,
RA Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F,
RA Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S,
RA Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)";
RL Science. 313:1596-1604(2006).
XX
RN [5]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..36
FT /accession="MIMAT0022913"
FT /product="ptc-miR408-5p"
FT /evidence=experimental
FT /experiment="miRNAseq [5]"
FT miRNA 76..96
FT /accession="MIMAT0002058"
FT /product="ptc-miR408-3p"
FT /evidence=experimental
FT /experiment="cloned [1], miRNAseq [5]"
XX
SQ Sequence 105 BP; 26 A; 25 C; 30 G; 0 T; 24 other;
agagacagau gaagacgggg aacaggcaga gcauggaugg agcuacuaac agaaguacuu 60
guuuuggcuc uacccaugca cugccucuuc ccuggcuugu ggcuc 105
//
ID ptc-MIR472a standard; RNA; PTC; 81 BP.
XX
AC MI0002354;
XX
DE Populus trichocarpa miR472a stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..77
FT /accession="MIMAT0002060"
FT /product="ptc-miR472a"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1]"
XX
SQ Sequence 81 BP; 17 A; 16 C; 20 G; 0 T; 28 other;
uuaucgggug ggugagcggg gaagauaacu uugguuuuug agauaguacu uguuauuuuc 60
ccuacuccac ccaucccaua g 81
//
ID ptc-MIR472b standard; RNA; PTC; 71 BP.
XX
AC MI0002355;
XX
DE Populus trichocarpa miR472b stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 46..67
FT /accession="MIMAT0002061"
FT /product="ptc-miR472b"
FT /evidence=not_experimental
FT /similarity="MI0002354"
XX
SQ Sequence 71 BP; 17 A; 16 C; 16 G; 0 T; 22 other;
uuacuggaug ggugaguggg gaagauaacu aagcucuguu uguuauuuuc ccaacuccac 60
ccaucccaua g 71
//
ID ptc-MIR477e standard; RNA; PTC; 100 BP.
XX
AC MI0002356;
XX
DE Populus trichocarpa miR477e stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..27
FT /accession="MIMAT0002062"
FT /product="ptc-miR477e-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], miRNAseq [2]"
FT miRNA 75..96
FT /accession="MIMAT0022914"
FT /product="ptc-miR477e-3p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
XX
SQ Sequence 100 BP; 23 A; 25 C; 26 G; 0 T; 26 other;
auuguucacu cucccucaag gcuuccaacg caauaaccag cuacguacau guaacugugu 60
uacggcugca ggcuugaggc cuuuggggga gaguggucaa 100
//
ID ptc-MIR477f standard; RNA; PTC; 100 BP.
XX
AC MI0002357;
XX
DE Populus trichocarpa miR477f stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..25
FT /accession="MIMAT0002063"
FT /product="ptc-miR477f"
FT /evidence=not_experimental
FT /similarity="MI0002356"
XX
SQ Sequence 100 BP; 20 A; 26 C; 28 G; 0 T; 26 other;
ugcucgcucu cccucagggc uuccaacgca guaagcaggu acgugcaugu cagcauauuc 60
ucgcugcagg cucgaggucu uuggugagag uagugaucaa 100
//
ID ptc-MIR474a standard; RNA; PTC; 104 BP.
XX
AC MI0002358;
XX
DE Populus trichocarpa miR474a stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..26
FT /accession="MIMAT0002064"
FT /product="ptc-miR474a"
FT /evidence=experimental
FT /experiment="cloned [1], PCR [1]"
XX
SQ Sequence 104 BP; 22 A; 30 C; 23 G; 0 T; 29 other;
uccaaaaguu gcuggguuug gcugggcagg cggacccaau gcuauugggu ucagcaggac 60
ccaacacuuc uuuccuucuc uucuaucacc agcacccuuu gaaa 104
//
ID ptc-MIR474b standard; RNA; PTC; 107 BP.
XX
AC MI0002359;
XX
DE Populus trichocarpa miR474b stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..26
FT /accession="MIMAT0002065"
FT /product="ptc-miR474b"
FT /evidence=not_experimental
FT /similarity="MI0002358"
XX
SQ Sequence 107 BP; 23 A; 21 C; 26 G; 0 T; 37 other;
uucaaaaguu guuggguuug gcugggcagc cagauccagu gcuauugggu ccuguuagac 60
aacgcuauuu ggucuuguca agcuagaucc aacauuacuu uuugacu 107
//
ID ptc-MIR474c standard; RNA; PTC; 75 BP.
XX
AC MI0002360;
XX
DE Populus trichocarpa miR474c stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 47..70
FT /accession="MIMAT0002066"
FT /product="ptc-miR474c"
FT /evidence=not_experimental
FT /similarity="MI0002358"
XX
SQ Sequence 75 BP; 20 A; 14 C; 21 G; 0 T; 20 other;
gacaguaaag cuacauccaa uaguccugga uucuggucaa uaagugcaaa agcuguuggg 60
uuuggcuggg cagcu 75
//
ID ptc-MIR475a standard; RNA; PTC; 124 BP.
XX
AC MI0002361;
XX
DE Populus trichocarpa miR475a stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..31
FT /accession="MIMAT0022915"
FT /product="ptc-miR475a-5p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
FT miRNA 101..121
FT /accession="MIMAT0002067"
FT /product="ptc-miR475a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], miRNAseq [2]"
XX
SQ Sequence 124 BP; 39 A; 22 C; 23 G; 0 T; 40 other;
caucuugauc aauggccauu guaagaguag aaggauccau gaagcaauaa uucucuuugc 60
uaaaaugugu gauaaaacau ugacuccugg uauuucacuc uuacagugcc cauugauuaa 120
gaug 124
//
ID ptc-MIR475b standard; RNA; PTC; 136 BP.
XX
AC MI0002362;
XX
DE Populus trichocarpa miR475b stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..38
FT /accession="MIMAT0022916"
FT /product="ptc-miR475b-5p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
FT miRNA 106..126
FT /accession="MIMAT0002068"
FT /product="ptc-miR475b-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], miRNAseq [2]"
XX
SQ Sequence 136 BP; 44 A; 25 C; 24 G; 0 T; 43 other;
gucauaacau cuugaucaau ggccauugua agaguagaag gauccaugaa gcaauaacuc 60
ucuuugcuga aaugugcgac caaauagacu cuugauauuu cauucuuaca gugcccauug 120
auuaagaugu uauaac 136
//
ID ptc-MIR475c standard; RNA; PTC; 125 BP.
XX
AC MI0002363;
XX
DE Populus trichocarpa miR475c stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 100..120
FT /accession="MIMAT0002069"
FT /product="ptc-miR475c"
FT /evidence=not_experimental
FT /similarity="MI0002361"
XX
SQ Sequence 125 BP; 40 A; 25 C; 22 G; 0 T; 38 other;
uaacaucuug aacaauggcc auuguaagag uaaguggucc augagucaau aacucucuuu 60
gcagaaaugc augacaaagc auugacuccu auuucacccu uacaaugucc auugauuaag 120
agguu 125
//
ID ptc-MIR475d standard; RNA; PTC; 103 BP.
XX
AC MI0002364;
XX
DE Populus trichocarpa miR475d stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0022917"
FT /product="ptc-miR475d-5p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
FT miRNA 77..97
FT /accession="MIMAT0002070"
FT /product="ptc-miR475d-3p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
FT /similarity="MI0002362"
XX
SQ Sequence 103 BP; 36 A; 20 C; 18 G; 0 T; 29 other;
auaacauccu gaucaauggc cauuguaaga guagaaggau ccaugaagca aaacauugac 60
uccugauauu ccacucuuac agaguccauu gauuaagaug uua 103
//
ID ptc-MIR476a standard; RNA; PTC; 96 BP.
XX
AC MI0002365;
XX
DE Populus trichocarpa miR476a stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..27
FT /accession="MIMAT0002071"
FT /product="ptc-miR476a"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1]"
XX
SQ Sequence 96 BP; 31 A; 16 C; 9 G; 0 T; 40 other;
uuaagcuagu aauccuucuu ugcaaaguca uuuauuauuu uuccuucaau uacuauaauc 60
aaugacuuug caaagauaga uuuacuagcu aaaucu 96
//
ID ptc-MIR476b standard; RNA; PTC; 93 BP.
XX
AC MI0002366;
XX
DE Populus trichocarpa miR476b stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..23
FT /accession="MIMAT0002072"
FT /product="ptc-miR476b"
FT /evidence=not_experimental
FT /similarity="MI0002365"
XX
SQ Sequence 93 BP; 31 A; 15 C; 10 G; 0 T; 37 other;
gcuaguaauu cuucuuugca aaaucauuaa uuauccuagc ucuaauuacu auaauuaaug 60
gcuuugcaaa gauagauuua cuagcuaaau cuu 93
//
ID ptc-MIR477a standard; RNA; PTC; 85 BP.
XX
AC MI0002368;
XX
DE Populus trichocarpa miR477a stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 22442676.
RA Puzey JR, Karger A, Axtell M, Kramer EM;
RT "Deep annotation of Populus trichocarpa microRNAs from diverse tissue
RT sets";
RL PLoS One. 7:e33034(2012).
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..23
FT /accession="MIMAT0002074"
FT /product="ptc-miR477a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1], miRNAseq [2]"
FT miRNA 65..85
FT /accession="MIMAT0022918"
FT /product="ptc-miR477a-3p"
FT /evidence=experimental
FT /experiment="miRNAseq [2]"
XX
SQ Sequence 85 BP; 23 A; 16 C; 19 G; 0 T; 27 other;
caaucucccu cagaggcuuc caauaucuca guuuauagua auugcuucaa auaacgagaa 60
uguuggaugc cuuuggggga gauug 85
//
ID ptc-MIR477b standard; RNA; PTC; 85 BP.
XX
AC MI0002369;
XX
DE Populus trichocarpa miR477b stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..23
FT /accession="MIMAT0002075"
FT /product="ptc-miR477b"
FT /evidence=experimental
FT /experiment="cloned [1], Northern [1]"
XX
SQ Sequence 85 BP; 23 A; 15 C; 18 G; 0 T; 29 other;
caaucucccu cagaggcuuc caauaucuca guuuauagua auugcuucaa auaaugagaa 60
uguuggaugc cuuuggguga gauug 85
//
ID ptc-MIR478a standard; RNA; PTC; 96 BP.
XX
AC MI0002370;
XX
DE Populus trichocarpa miR478a stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 70..93
FT /accession="MIMAT0002076"
FT /product="ptc-miR478a"
FT /evidence=experimental
FT /experiment="cloned [1], PCR [1]"
XX
SQ Sequence 96 BP; 19 A; 15 C; 20 G; 0 T; 42 other;
cucccuuuua ggguuaaaac gucaacauuu uagacgaguc ucuuauuuuu agggacuggu 60
guuauuuuuu gacgugucuu cuauuuuuag ggacug 96
//
ID ptc-MIR478b standard; RNA; PTC; 96 BP.
XX
AC MI0002371;
XX
DE Populus trichocarpa miR478b stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 71..94
FT /accession="MIMAT0002077"
FT /product="ptc-miR478b"
FT /evidence=experimental
FT /experiment="cloned [1], PCR [1]"
XX
SQ Sequence 96 BP; 19 A; 17 C; 19 G; 0 T; 41 other;
ucucccuuuu aggguuaaaa cgucaacauu uuagacgagu cuccuauuuu uagggacugg 60
uguuauuuuu ugacgugucu ucuauuuuua gggacc 96
//
ID ptc-MIR478c standard; RNA; PTC; 95 BP.
XX
AC MI0002372;
XX
DE Populus trichocarpa miR478c stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 70..93
FT /accession="MIMAT0002078"
FT /product="ptc-miR478c"
FT /evidence=experimental
FT /experiment="cloned [1], PCR [1]"
XX
SQ Sequence 95 BP; 17 A; 12 C; 19 G; 0 T; 47 other;
ucuccuuuuu aggguuaaau gucaauauuu uagacgaguu uucuauuuuu agggucuggu 60
guuauuuuuu gacgugucuu cuauuuuuag ggacc 95
//
ID ptc-MIR478d standard; RNA; PTC; 96 BP.
XX
AC MI0002373;
XX
DE Populus trichocarpa miR478d stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 64..87
FT /accession="MIMAT0002079"
FT /product="ptc-miR478d"
FT /evidence=experimental
FT /experiment="cloned [1], PCR [1]"
XX
SQ Sequence 96 BP; 23 A; 17 C; 18 G; 0 T; 38 other;
agccuaaucg acgugucucc uacuuuuagg guuggacguu aacuuuuuua ugaauagccu 60
aguugacaug ucuucuauuu uuaguaacca agauug 96
//
ID ptc-MIR478e standard; RNA; PTC; 85 BP.
XX
AC MI0002374;
XX
DE Populus trichocarpa miR478e stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..75
FT /accession="MIMAT0002080"
FT /product="ptc-miR478e"
FT /evidence=not_experimental
FT /similarity="MI0002373"
XX
SQ Sequence 85 BP; 23 A; 14 C; 17 G; 0 T; 31 other;
gagucuucua ucuuuaagaa cggacaucau auuucucgug aauggucuaa uugacgaguc 60
uucuauuuuu agggauagac acuag 85
//
ID ptc-MIR478f standard; RNA; PTC; 63 BP.
XX
AC MI0002375;
XX
DE Populus trichocarpa miR478f stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 36..59
FT /accession="MIMAT0002081"
FT /product="ptc-miR478f"
FT /evidence=not_experimental
FT /similarity="MI0002370"
XX
SQ Sequence 63 BP; 14 A; 9 C; 12 G; 0 T; 28 other;
aaguaucuua uuuuuaggag ccgaugucau uuuuuugaca ugucuucuau uuuuagggac 60
cga 63
//
ID ptc-MIR478h standard; RNA; PTC; 95 BP.
XX
AC MI0002376;
XX
DE Populus trichocarpa miR478h stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 70..93
FT /accession="MIMAT0002082"
FT /product="ptc-miR478h"
FT /evidence=not_experimental
FT /similarity="MI0002370"
XX
SQ Sequence 95 BP; 21 A; 18 C; 18 G; 0 T; 38 other;
ucuccuuuuu agggacaaac gucaauauuu uagacgaguc uccuaauuuu uagggacugg 60
ugucauuuuu aacgugucuc cuauuuuuag ggacc 95
//
ID ptc-MIR478i standard; RNA; PTC; 59 BP.
XX
AC MI0002377;
XX
DE Populus trichocarpa miR478i stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 34..57
FT /accession="MIMAT0002083"
FT /product="ptc-miR478i"
FT /evidence=not_experimental
FT /similarity="MI0002370"
XX
SQ Sequence 59 BP; 12 A; 10 C; 11 G; 0 T; 26 other;
agucuccuaa uuuuuaggga cugauguuau uuuuaacgug ucuccuauuu uuagggacc 59
//
ID ptc-MIR478j standard; RNA; PTC; 59 BP.
XX
AC MI0002378;
XX
DE Populus trichocarpa miR478j stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 34..57
FT /accession="MIMAT0002084"
FT /product="ptc-miR478j"
FT /evidence=not_experimental
FT /similarity="MI0002370"
XX
SQ Sequence 59 BP; 12 A; 10 C; 11 G; 0 T; 26 other;
agucuccuaa uuuuuaggga cugauguuau uuuuaacgug ucuccuauuu uuagggacc 59
//
ID ptc-MIR478k standard; RNA; PTC; 59 BP.
XX
AC MI0002379;
XX
DE Populus trichocarpa miR478k stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 34..57
FT /accession="MIMAT0002085"
FT /product="ptc-miR478k"
FT /evidence=not_experimental
FT /similarity="MI0002370"
XX
SQ Sequence 59 BP; 12 A; 10 C; 11 G; 0 T; 26 other;
agucuccuaa uuuuuaggga cugauguuau uuuuaacgug ucuccuauuu uuagggacc 59
//
ID ptc-MIR478l standard; RNA; PTC; 59 BP.
XX
AC MI0002380;
XX
DE Populus trichocarpa miR478l stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 34..57
FT /accession="MIMAT0002086"
FT /product="ptc-miR478l"
FT /evidence=not_experimental
FT /similarity="MI0002370"
XX
SQ Sequence 59 BP; 12 A; 10 C; 11 G; 0 T; 26 other;
agucuccuaa uuuuuaggga cugauguuau uuuuaacgug ucuccuauuu uuagggacc 59
//
ID ptc-MIR478m standard; RNA; PTC; 59 BP.
XX
AC MI0002381;
XX
DE Populus trichocarpa miR478m stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 34..57
FT /accession="MIMAT0002087"
FT /product="ptc-miR478m"
FT /evidence=not_experimental
FT /similarity="MI0002370"
XX
SQ Sequence 59 BP; 12 A; 10 C; 11 G; 0 T; 26 other;
agucuccuaa uuuuuaggga cugauguuau uuuuaacgug ucuccuauuu uuagggacc 59
//
ID ptc-MIR478o standard; RNA; PTC; 95 BP.
XX
AC MI0002383;
XX
DE Populus trichocarpa miR478o stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 70..93
FT /accession="MIMAT0002089"
FT /product="ptc-miR478o"
FT /evidence=not_experimental
FT /similarity="MI0002370"
XX
SQ Sequence 95 BP; 24 A; 17 C; 16 G; 0 T; 38 other;
ucuccuuuuu aggaauaaac guuaauauuc uagacgaguc uccuaaauuu uagggacuga 60
ugucauuuuu aacgugucuc cuauuuuuag ggacc 95
//
ID ptc-MIR478p standard; RNA; PTC; 95 BP.
XX
AC MI0002384;
XX
DE Populus trichocarpa miR478p stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 70..93
FT /accession="MIMAT0002090"
FT /product="ptc-miR478p"
FT /evidence=not_experimental
FT /similarity="MI0002370"
XX
SQ Sequence 95 BP; 22 A; 17 C; 16 G; 0 T; 40 other;
ucuccuuuuu ugggacaaac gucaauauuu uagacgaguc uccuaauuuu uagggacuaa 60
ugucauuuuu aacgugucuu cuauuuuuag ggacc 95
//
ID ptc-MIR478q standard; RNA; PTC; 95 BP.
XX
AC MI0002385;
XX
DE Populus trichocarpa miR478q stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 70..93
FT /accession="MIMAT0002091"
FT /product="ptc-miR478q"
FT /evidence=not_experimental
FT /similarity="MI0002370"
XX
SQ Sequence 95 BP; 23 A; 16 C; 17 G; 0 T; 39 other;
ucuccuuuuu agggauaaac guuaauguuu uagacgaguc uccuaaauuu uagggacuaa 60
ugucauuuuu aacgugucuc cuauuuuuag ggacc 95
//
ID ptc-MIR478r standard; RNA; PTC; 58 BP.
XX
AC MI0002386;
XX
DE Populus trichocarpa miR478r stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 33..56
FT /accession="MIMAT0002092"
FT /product="ptc-miR478r"
FT /evidence=not_experimental
FT /similarity="MI0002370"
XX
SQ Sequence 58 BP; 12 A; 11 C; 12 G; 0 T; 23 other;
agucuccuag uuugagggac ugauaucauu uuuaacgugu cuccuauuuu uagggacc 58
//
ID ptc-MIR478s standard; RNA; PTC; 95 BP.
XX
AC MI0002387;
XX
DE Populus trichocarpa miR478s stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 70..93
FT /accession="MIMAT0002093"
FT /product="ptc-miR478s"
FT /evidence=not_experimental
FT /similarity="MI0002370"
XX
SQ Sequence 95 BP; 24 A; 15 C; 17 G; 0 T; 39 other;
ucucauuuuu agggauaaac guuaauguuu uagacgaguc uccuaaauuu uagggacuaa 60
ugucauuuuu aacgugucuc cuauuuuuag ggacc 95
//
ID ptc-MIR478n standard; RNA; PTC; 95 BP.
XX
AC MI0002388;
XX
DE Populus trichocarpa miR478n stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 70..93
FT /accession="MIMAT0002094"
FT /product="ptc-miR478n"
FT /evidence=not_experimental
FT /similarity="MI0002370"
XX
SQ Sequence 95 BP; 22 A; 17 C; 17 G; 0 T; 39 other;
ucuccuuuuu agggauaaac gucaauauuu uagacgaguc uccuaauuuu uagggacuga 60
ugucauuuuu aacgugucuc cuauuuuuag ggacc 95
//
ID ptc-MIR480 standard; RNA; PTC; 140 BP.
XX
AC MI0002390;
XX
DE Populus trichocarpa miR480 stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 111..134
FT /accession="MIMAT0002096"
FT /product="ptc-miR480"
FT /evidence=experimental
FT /experiment="cloned [1], PCR [1]"
XX
SQ Sequence 140 BP; 45 A; 25 C; 23 G; 0 T; 47 other;
uaauauguuu gggguugauc cuuguuuagu uauaauagac ccacaccuga cugcuuagaa 60
uuauuuguua ucgcauaucc gacuacauua uugacguuga aaaacagaga acuacuacau 120
cauugacguu gaaccauaaa 140
//
ID ptc-MIR481a standard; RNA; PTC; 93 BP.
XX
AC MI0002392;
XX
DE Populus trichocarpa miR481a stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 68..91
FT /accession="MIMAT0002098"
FT /product="ptc-miR481a"
FT /evidence=experimental
FT /experiment="PCR [1]"
XX
SQ Sequence 93 BP; 32 A; 11 C; 24 G; 0 T; 26 other;
gaagguuaag uguguugggg uaguggagau ggucaaagau guuagagaau aauauaaauc 60
auauccuagg accucacuua acagcuuaag cua 93
//
ID ptc-MIR481b standard; RNA; PTC; 220 BP.
XX
AC MI0002393;
XX
DE Populus trichocarpa miR481b stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..29
FT /accession="MIMAT0002099"
FT /product="ptc-miR481b"
FT /evidence=experimental
FT /experiment="PCR [1]"
XX
SQ Sequence 220 BP; 68 A; 37 C; 41 G; 0 T; 74 other;
auccuaggac cucacuuaac agcuuaagcu auuggguuga gaugguucuu ugacaugaua 60
ucagagccuu gauaaccaag uggucucgag uuugaaucuc aucauccuca uuuauuugau 120
aaaaaauacu uaaaggggug uguuagagaa uaauauaaau cauauucugg aaccucaccu 180
aacagcuuaa gcuauugggu ugaaaugauu cuuugacauu 220
//
ID ptc-MIR481c standard; RNA; PTC; 195 BP.
XX
AC MI0002394;
XX
DE Populus trichocarpa miR481c stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..29
FT /accession="MIMAT0002100"
FT /product="ptc-miR481c"
FT /evidence=experimental
FT /experiment="PCR [1]"
XX
SQ Sequence 195 BP; 54 A; 38 C; 44 G; 0 T; 59 other;
auccuaggac cucacuuaac agcuuaagcu uuuggguuga gaugauucuu ugacaugaua 60
ucagagcuuu gaugaccaag cggucacgag uucgaaucuc accaucccua uuuauuugau 120
aaaauuaagc acaagguaau gugagccugu gcaaguuuca agcccaaaga gcuuucacuu 180
gagggggugu guuag 195
//
ID ptc-MIR481d standard; RNA; PTC; 196 BP.
XX
AC MI0002396;
XX
DE Populus trichocarpa miR481d stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..29
FT /accession="MIMAT0002102"
FT /product="ptc-miR481d"
FT /evidence=experimental
FT /experiment="PCR [1]"
XX
SQ Sequence 196 BP; 56 A; 40 C; 44 G; 0 T; 56 other;
auccuaggac cucaccuaac agcuuaagcu auuggguuga gaugauucuu ugacauggua 60
ucagagccuu gaugaccaag uggucacgag uucgaaucuc accacuccua uuuauuugau 120
aaaaaucaag cacaagguaa ugugggccua ugcaaguuuc aagcccaaag agcuuucacu 180
ugagggggug uauuag 196
//
ID ptc-MIR482a standard; RNA; PTC; 107 BP.
XX
AC MI0002397;
XX
DE Populus trichocarpa miR482a stem-loop
XX
RN [1]
RX PUBMED; 15994906.
RA Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL;
RT "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa
RT that are absent from Arabidopsis";
RL Plant Cell. 17:2186-2203(2005).
XX
RN [2]
RX PUBMED; 18363789.
RA Lu S, Sun YH, Chiang VL;
RT "Stress-responsive microRNAs in Populus";
RL Plant J. 55:131-151(2008).
XX
FH Key Location/Qualifiers
FH
FT miRNA 68..87
FT /accession="MIMAT0006785"
FT /product="ptc-miR482a.2"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 73..89
FT /accession="MIMAT0002103"
FT /product="ptc-miR482a.1"
FT /evidence=experimental
FT /experiment="cloned [1], PCR [1]"
XX
SQ Sequence 107 BP; 27 A; 25 C; 21 G; 0 T; 34 other;
gaguccuagc aagucuuugg agaugggaga guaugcaaga aggaaaaauu caugauuuaa 60
uauuccuucu ugccuacucc ucccauucca ucugcuuucu gcgacuc 107
//
ID mmu-mir-463 standard; RNA; MMU; 75 BP.
XX
AC MI0002398;
XX
DE Mus musculus miR-463 stem-loop
XX
RN [1]
RX PUBMED; 15901636.
RA Yu Z, Raabe T, Hecht NB;
RT "MicroRNA Mirn122a reduces expression of the posttranscriptionally
RT regulated germ cell transition protein 2 (Tnp2) messenger RNA (mRNA) by
RT mRNA cleavage";
RL Biol Reprod. 73:427-433(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619451; Mir463.
DR ENTREZGENE; 723887; Mir463.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0002104"
FT /product="mmu-miR-463-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
FT miRNA 41..62
FT /accession="MIMAT0004758"
FT /product="mmu-miR-463-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 75 BP; 27 A; 12 C; 13 G; 0 T; 23 other;
cuuuaccuaa uuuguugucc aucauguaaa acauaaauga ugauagacac cauauaaggu 60
agaggaaggu ucacu 75
//
ID mmu-mir-465a standard; RNA; MMU; 74 BP.
XX
AC MI0002400;
XX
DE Mus musculus miR-465a stem-loop
XX
RN [1]
RX PUBMED; 15901636.
RA Yu Z, Raabe T, Hecht NB;
RT "MicroRNA Mirn122a reduces expression of the posttranscriptionally
RT regulated germ cell transition protein 2 (Tnp2) messenger RNA (mRNA) by
RT mRNA cleavage";
RL Biol Reprod. 73:427-433(2005).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619453; Mirn465.
DR ENTREZGENE; 723888; Mir465.
XX
CC Yu et al. identified a mature miRNA product from the 5' arm of this
CC precursor, renamed miR-465a-5p here [1]. Watanabe et al. later reported a
CC 3' miRNA product [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..27
FT /accession="MIMAT0002106"
FT /product="mmu-miR-465a-5p"
FT /evidence=experimental
FT /experiment="cloned [1,3], Illumina [4-5]"
FT miRNA 42..63
FT /accession="MIMAT0004217"
FT /product="mmu-miR-465a-3p"
FT /evidence=experimental
FT /experiment="cloned [2-3], Illumina [4-5]"
XX
SQ Sequence 74 BP; 26 A; 11 C; 16 G; 0 T; 21 other;
gcccuauuua gaauggcacu gaugugauaa aauaaaaaau ugaucagggc cuuucuaagu 60
agaguaaggc uuac 74
//
ID mmu-mir-466a standard; RNA; MMU; 73 BP.
XX
AC MI0002401;
XX
DE Mus musculus miR-466a stem-loop
XX
RN [1]
RX PUBMED; 15901636.
RA Yu Z, Raabe T, Hecht NB;
RT "MicroRNA Mirn122a reduces expression of the posttranscriptionally
RT regulated germ cell transition protein 2 (Tnp2) messenger RNA (mRNA) by
RT mRNA cleavage";
RL Biol Reprod. 73:427-433(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [4]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619454; Mirn466.
DR ENTREZGENE; 723922; Mir466.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2]. The ends of the miRNA may be offset
CC with respect to previous annotations.
XX
FH Key Location/Qualifiers
FH
FT miRNA 11..32
FT /accession="MIMAT0004759"
FT /product="mmu-miR-466a-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT miRNA 50..72
FT /accession="MIMAT0002107"
FT /product="mmu-miR-466a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Illumina [3-4]"
XX
SQ Sequence 73 BP; 25 A; 11 C; 12 G; 0 T; 25 other;
uauauguguu uaugugugug uacauguaca uaugugaaua ugauauccau auacauacac 60
gcacacauaa gac 73
//
ID mmu-mir-467a-1 standard; RNA; MMU; 73 BP.
XX
AC MI0002402;
XX
DE Mus musculus miR-467a-1 stem-loop
XX
RN [1]
RX PUBMED; 15901636.
RA Yu Z, Raabe T, Hecht NB;
RT "MicroRNA Mirn122a reduces expression of the posttranscriptionally
RT regulated germ cell transition protein 2 (Tnp2) messenger RNA (mRNA) by
RT mRNA cleavage";
RL Biol Reprod. 73:427-433(2005).
XX
RN [2]
RX PUBMED; 16582102.
RA Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K,
RA Mirochnitchenko O, Inouye M, Kato I;
RT "The expression profile of microRNAs in mouse embryos";
RL Nucleic Acids Res. 34:1765-1771(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3629612; Mirn467a.
DR ENTREZGENE; 735286; Mir467a-1.
XX
CC The sequence of miR-467 is of low complexity. The sequence maps exactly
CC to several genomic positions, and many more with 1 or 2 substitutions.
CC Confidence in this miRNA might therefore be reduced.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0003409"
FT /product="mmu-miR-467a-5p"
FT /evidence=experimental
FT /experiment="MPSS [2], cloned [3], Illumina [4-5]"
FT miRNA 45..66
FT /accession="MIMAT0002108"
FT /product="mmu-miR-467a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
XX
SQ Sequence 73 BP; 21 A; 17 C; 12 G; 0 T; 23 other;
cugugugcgu aagugccugc auguauaugc guguauauuu uaugcauaua cauacacaca 60
ccuacacaca cau 73
//
ID mmu-mir-468 standard; RNA; MMU; 78 BP.
XX
AC MI0002403;
XX
DE Mus musculus miR-468 stem-loop
XX
RN [1]
RX PUBMED; 15901636.
RA Yu Z, Raabe T, Hecht NB;
RT "MicroRNA Mirn122a reduces expression of the posttranscriptionally
RT regulated germ cell transition protein 2 (Tnp2) messenger RNA (mRNA) by
RT mRNA cleavage";
RL Biol Reprod. 73:427-433(2005).
XX
DR MGI; 3619414; Mir468.
DR ENTREZGENE; 723871; Mir468.
XX
CC The pattern of reads from deep sequencing experiments that map to the
CC mir-468 locus suggests this annotation is dubious. The entry may be
CC removed in future releases.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..48
FT /accession="MIMAT0022699"
FT /product="mmu-miR-468-5p"
FT /evidence=not_experimental
FT miRNA 53..75
FT /accession="MIMAT0002109"
FT /product="mmu-miR-468-3p"
FT /evidence=experimental
FT /experiment="cloned [1]"
XX
SQ Sequence 78 BP; 20 A; 11 C; 22 G; 0 T; 25 other;
auaagaaacu uggcgugucg ugacugaugu acugauaaga aacucagugu gauaugacug 60
augugcgugu gucugucu 78
//
ID mmu-mir-470 standard; RNA; MMU; 75 BP.
XX
AC MI0002405;
XX
DE Mus musculus miR-470 stem-loop
XX
RN [1]
RX PUBMED; 15901636.
RA Yu Z, Raabe T, Hecht NB;
RT "MicroRNA Mirn122a reduces expression of the posttranscriptionally
RT regulated germ cell transition protein 2 (Tnp2) messenger RNA (mRNA) by
RT mRNA cleavage";
RL Biol Reprod. 73:427-433(2005).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619418; Mir470.
DR ENTREZGENE; 723873; Mir470.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..31
FT /accession="MIMAT0002111"
FT /product="mmu-miR-470-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 44..65
FT /accession="MIMAT0004760"
FT /product="mmu-miR-470-3p"
FT /evidence=experimental
FT /experiment="cloned [3], Illumina [4-5]"
XX
SQ Sequence 75 BP; 23 A; 16 C; 16 G; 0 T; 20 other;
cagugcucuu cuuggacugg cacuggugag uuaaacuaaa uacaaccagu accuuucuga 60
gaagaguaaa gcuca 75
//
ID mmu-mir-471 standard; RNA; MMU; 67 BP.
XX
AC MI0002406;
XX
DE Mus musculus miR-471 stem-loop
XX
RN [1]
RX PUBMED; 15901636.
RA Yu Z, Raabe T, Hecht NB;
RT "MicroRNA Mirn122a reduces expression of the posttranscriptionally
RT regulated germ cell transition protein 2 (Tnp2) messenger RNA (mRNA) by
RT mRNA cleavage";
RL Biol Reprod. 73:427-433(2005).
XX
RN [2]
RX PUBMED; 16766679.
RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
RA Imai H;
RT "Identification and characterization of two novel classes of small RNAs in
RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
RT small RNAs in testes";
RL Genes Dev. 20:1732-1743(2006).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 20215419.
RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
RA Marra MA, Rajkovic A;
RT "MicroRNA transcriptome in the newborn mouse ovaries determined by massive
RT parallel sequencing";
RL Mol Hum Reprod. 16:463-471(2010).
XX
RN [5]
RX PUBMED; 20413612.
RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
RA DP;
RT "Mammalian microRNAs: experimental evaluation of novel and previously
RT annotated genes";
RL Genes Dev. 24:992-1009(2010).
XX
DR MGI; 3619419; Mir471.
DR ENTREZGENE; 723939; Mir471.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0002112"
FT /product="mmu-miR-471-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Illumina [4-5]"
FT miRNA 42..63
FT /accession="MIMAT0017195"
FT /product="mmu-miR-471-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 67 BP; 23 A; 9 C; 14 G; 0 T; 21 other;
gugcuuuacg uaguauagug cuuuucacau uaaacaaaaa gugaaaggug ccauacuaug 60
uauagga 67
//
ID ath-MIR447a standard; RNA; ATH; 237 BP.
XX
AC MI0002407;
XX
DE Arabidopsis thaliana miR447a stem-loop
XX
RN [1]
RX PUBMED; 15851028.
RA Allen E, Xie Z, Gustafson AM, Carrington JC;
RT "microRNA-directed phasing during trans-acting siRNA biogenesis in
RT plants";
RL Cell. 121:207-221(2005).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [4]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
RN [5]
RX PUBMED; 21357774.
RA Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD;
RT "MicroRNA activity in the Arabidopsis male germline";
RL J Exp Bot. 62:1611-1620(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 160..181
FT /accession="MIMAT0002113"
FT /product="ath-miR447a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], 5'RACE [2], 454 [3], Illumina
FT [4]"
FT miRNA 203..223
FT /accession="MIMAT0020345"
FT /product="ath-miR447a.2-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 237 BP; 62 A; 39 C; 47 G; 0 T; 89 other;
cauucuuaau auauaauacu acuuuuucau ccauuaaacc ccuuacaaug ucgaguaaac 60
gaagcaucug uccccuggua uugucuucga gcuugguguu uuuuucuagc caacuccaag 120
uucucgaguu gaucauuguu uguauucuug agacauuauu uggggacgag auguuuuguu 180
gacucgauau aagaaggggc uuuauggaag aaauuguagu auuauauauc gagagug 237
//
ID ath-MIR447b standard; RNA; ATH; 236 BP.
XX
AC MI0002408;
XX
DE Arabidopsis thaliana miR447b stem-loop
XX
RN [1]
RX PUBMED; 15851028.
RA Allen E, Xie Z, Gustafson AM, Carrington JC;
RT "microRNA-directed phasing during trans-acting siRNA biogenesis in
RT plants";
RL Cell. 121:207-221(2005).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [4]
RX PUBMED; 19815687.
RA Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
RT "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in
RT Arabidopsis";
RL J Exp Bot. 61:165-177(2010).
XX
FH Key Location/Qualifiers
FH
FT miRNA 159..180
FT /accession="MIMAT0002114"
FT /product="ath-miR447b"
FT /evidence=experimental
FT /experiment="cloned [1-2], 5'RACE [2], 454 [3], Illumina
FT [4]"
XX
SQ Sequence 236 BP; 61 A; 41 C; 47 G; 0 T; 87 other;
cauucuuaau auacaauacu acuuuuucau ccauuaaucc ccuuacaaug ucgaguaaac 60
gaagcaucug uccccuggua uugucuucga gcuuggugug uuuuucuagc cagccccaag 120
uucucgaguu gaucauuguu uguauucuga cacauuauuu ggggacgaga uguuuuguug 180
acucgauaua agaaggggcu uuauggaaga aauuguagua uuauauauug agaaug 236
//
ID ath-MIR447c standard; RNA; ATH; 198 BP.
XX
AC MI0002409;
XX
DE Arabidopsis thaliana miR447c stem-loop
XX
RN [1]
RX PUBMED; 15851028.
RA Allen E, Xie Z, Gustafson AM, Carrington JC;
RT "microRNA-directed phasing during trans-acting siRNA biogenesis in
RT plants";
RL Cell. 121:207-221(2005).
XX
RN [2]
RX PUBMED; 16040653.
RA Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
RT "Expression of Arabidopsis MIRNA genes";
RL Plant Physiol. 138:2145-2154(2005).
XX
RN [3]
RX PUBMED; 17182867.
RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
RT "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
RT thaliana";
RL Genes Dev. 20:3407-3425(2006).
XX
RN [4]
RX PUBMED; 21357774.
RA Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD;
RT "MicroRNA activity in the Arabidopsis male germline";
RL J Exp Bot. 62:1611-1620(2011).
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..59
FT /accession="MIMAT0020346"
FT /product="ath-miR447c-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 121..142
FT /accession="MIMAT0002115"
FT /product="ath-miR447c-3p"
FT /evidence=experimental
FT /experiment="cloned [1], 5'RACE [2], 454 [3]"
XX
SQ Sequence 198 BP; 56 A; 29 C; 40 G; 0 T; 73 other;
cauucuuaau auacaauacu ucuuuuucau gcauuaagcc ccuuacaaug ucgaguaaac 60
aaagcaugug uccgcuaaua uugucuucga gcuugguauu uuuguauucu gauacgguau 120
uuggggacga caucuuuugu ugacucgaua uaagaagggg guuuguggaa gaaauuguag 180
uauuauauau caagaaug 198
//
ID ssc-mir-105-1 standard; RNA; SSC; 81 BP.
XX
AC MI0002410;
XX
DE Sus scrofa miR-105-1 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
DR ENTREZGENE; 100316547; MIR105-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..32
FT /accession="MIMAT0002116"
FT /product="ssc-miR-105-1"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000111"
XX
SQ Sequence 81 BP; 15 A; 19 C; 23 G; 0 T; 24 other;
ugugcaucgu agucaaaugc ucagacuccu gugguggcug cucaugcacc acggauguuu 60
gagcaugugc uacggugucu a 81
//
ID ssc-mir-105-2 standard; RNA; SSC; 80 BP.
XX
AC MI0002411;
XX
DE Sus scrofa miR-105-2 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
DR ENTREZGENE; 100316603; MIR105-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..32
FT /accession="MIMAT0002117"
FT /product="ssc-miR-105-2"
FT /evidence=not_experimental
FT /similarity="MI0000112"
XX
SQ Sequence 80 BP; 14 A; 17 C; 23 G; 0 T; 26 other;
ugugcaucgu ggucaaaugc ucagacuccu ugguggcugc uuaugcacca cggauguuug 60
agcaugugcu auggugucua 80
//
ID ssc-mir-106a standard; RNA; SSC; 81 BP.
XX
AC MI0002412;
XX
DE Sus scrofa miR-106a stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [3]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316588; MIR106A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..36
FT /accession="MIMAT0002118"
FT /product="ssc-miR-106a"
FT /evidence=experimental
FT /experiment="Illumina [2-3]"
FT /similarity="MI0000113"
XX
SQ Sequence 81 BP; 20 A; 18 C; 18 G; 0 T; 25 other;
ccuuggccgu guaaaagugc uuacagugca gguagcuuuu ugagaucuac ugcaaugcaa 60
gcacuucuua cauuaccaug g 81
//
ID ssc-mir-122 standard; RNA; SSC; 85 BP.
XX
AC MI0002413;
XX
DE Sus scrofa miR-122 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19196471.
RA Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva
RA U, Zhang W, Sunkar R;
RT "Cloning, characterization and expression analysis of porcine microRNAs";
RL BMC Genomics. 10:65(2009).
XX
RN [3]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [4]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [5]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
RN [6]
RX PUBMED; 25230983.
RA Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M;
RT "The characteristics of the porcine (Sus scrofa) liver miRNAome with the
RT use of next generation sequencing";
RL J Appl Genet. 56:239-252(2015).
XX
DR ENTREZGENE; 100170404; MIR122.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0002119"
FT /product="ssc-miR-122-5p"
FT /evidence=experimental
FT /experiment="454 [2], Illumina [3-5]"
FT /similarity="MI0000442"
FT miRNA 51..71
FT /accession="MIMAT0037315"
FT /product="ssc-miR-122-3p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
XX
SQ Sequence 85 BP; 24 A; 18 C; 19 G; 0 T; 24 other;
ccuuagcaga gcuguggagu gugacaaugg uguuuguguc caaacuauca aacgccauua 60
ucacacuaaa uagcuacugu uaggc 85
//
ID ssc-mir-125b-2 standard; RNA; SSC; 89 BP.
XX
AC MI0002414;
XX
DE Sus scrofa miR-125b-2 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [3]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316597; MIR125B-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0002120"
FT /product="ssc-miR-125b"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000470"
XX
SQ Sequence 89 BP; 22 A; 21 C; 23 G; 0 T; 23 other;
accagacuuu uccuaguccc ugagacccua acuugugagg uauuuuagua acaucacaag 60
ucaggcucuu gggaccuagg cggagggga 89
//
ID ssc-mir-135-1 standard; RNA; SSC; 90 BP.
XX
AC MI0002415;
XX
DE Sus scrofa miR-135-1 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
DR ENTREZGENE; 100316548; MIR135-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0002121"
FT /product="ssc-miR-135"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000452"
XX
SQ Sequence 90 BP; 15 A; 21 C; 25 G; 0 T; 29 other;
aggccucgcu guucucuaug gcuuuuuauu ccuaugugau ucuacugcuc auucauauag 60
ggauuggagc cguggcgcac ggcggggaca 90
//
ID ssc-mir-135-2 standard; RNA; SSC; 100 BP.
XX
AC MI0002416;
XX
DE Sus scrofa miR-135-2 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
DR ENTREZGENE; 100316549; MIR135-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0002121"
FT /product="ssc-miR-135"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000453"
XX
SQ Sequence 100 BP; 34 A; 13 C; 19 G; 0 T; 34 other;
agauaaauuc acucuagugc uuuauggcuu uuuauuccua ugugauagua auaaagucuc 60
auguagggau ggaagccaug aaauacauug ugaaaaauca 100
//
ID ssc-mir-145 standard; RNA; SSC; 86 BP.
XX
AC MI0002417;
XX
DE Sus scrofa miR-145 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 18548309.
RA Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS;
RT "Identification and characterization of new microRNAs from pig";
RL Mamm Genome. 19:570-580(2008).
XX
RN [3]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [4]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [5]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [6]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316550; MIR145.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0002123"
FT /product="ssc-miR-145-5p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [3,5-6]"
FT /similarity="MI0000461"
FT miRNA 54..75
FT /accession="MIMAT0022919"
FT /product="ssc-miR-145-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 86 BP; 17 A; 21 C; 22 G; 0 T; 26 other;
caccuugucc ucacggucca guuuucccag gaaucccuua gaugcugaga uggggauucc 60
uggaaauacu guucuugagg ucaugg 86
//
ID ssc-mir-148a standard; RNA; SSC; 68 BP.
XX
AC MI0002418;
XX
DE Sus scrofa miR-148a stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [3]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [4]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [5]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316604; MIR148A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0022920"
FT /product="ssc-miR-148a-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 44..65
FT /accession="MIMAT0002124"
FT /product="ssc-miR-148a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2,4-5], cloned [3]"
FT /similarity="MI0000253"
XX
SQ Sequence 68 BP; 21 A; 15 C; 15 G; 0 T; 17 other;
gaggcaaagu ucugagacac uccgacucug aauaugauag aagucagugc acuacagaac 60
uuugucuc 68
//
ID ssc-mir-15b standard; RNA; SSC; 98 BP.
XX
AC MI0002419;
XX
DE Sus scrofa miR-15b stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 18548309.
RA Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS;
RT "Identification and characterization of new microRNAs from pig";
RL Mamm Genome. 19:570-580(2008).
XX
RN [3]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [4]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [5]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [6]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100170411; MIR15B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0002125"
FT /product="ssc-miR-15b"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [3,5-6]"
FT /similarity="MI0000438"
XX
SQ Sequence 98 BP; 33 A; 17 C; 17 G; 0 T; 31 other;
uugaggccuu aaaguacugu agcagcacau caugguuuac auacuacaau caagaugcga 60
aucauuauuu gcugcucuag aaauuuaagg aaauucau 98
//
ID ssc-mir-181b-2 standard; RNA; SSC; 86 BP.
XX
AC MI0002420;
XX
DE Sus scrofa miR-181b-2 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19196471.
RA Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva
RA U, Zhang W, Sunkar R;
RT "Cloning, characterization and expression analysis of porcine microRNAs";
RL BMC Genomics. 10:65(2009).
XX
RN [3]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [4]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [5]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100170405; MIR181B-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..36
FT /accession="MIMAT0002126"
FT /product="ssc-miR-181b"
FT /evidence=experimental
FT /experiment="454 [2], Illumina [3-5]"
FT /similarity="MI0000683"
XX
SQ Sequence 86 BP; 25 A; 20 C; 19 G; 0 T; 22 other;
auggcugcac ucaacauuca uugcugucgg uggguuugag ucugaaucaa cucacugauc 60
aaugaaugca aacugcggac caaaca 86
//
ID ssc-mir-184 standard; RNA; SSC; 83 BP.
XX
AC MI0002421;
XX
DE Sus scrofa miR-184 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19196471.
RA Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva
RA U, Zhang W, Sunkar R;
RT "Cloning, characterization and expression analysis of porcine microRNAs";
RL BMC Genomics. 10:65(2009).
XX
RN [3]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [4]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [5]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100170407; MIR184.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..73
FT /accession="MIMAT0002127"
FT /product="ssc-miR-184"
FT /evidence=experimental
FT /experiment="454 [2], Illumina [3-5]"
FT /similarity="MI0000481"
XX
SQ Sequence 83 BP; 21 A; 19 C; 19 G; 0 T; 24 other;
ccagucacau ccccuuauca cuuuuccagc cagcuuugug acucuaaaug uuggacggag 60
aacugauaag gguaggugau uga 83
//
ID ssc-mir-19a standard; RNA; SSC; 82 BP.
XX
AC MI0002422;
XX
DE Sus scrofa miR-19a stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
DR ENTREZGENE; 100170408; MIR19A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..71
FT /accession="MIMAT0002128"
FT /product="ssc-miR-19a"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000073"
XX
SQ Sequence 82 BP; 22 A; 15 C; 20 G; 0 T; 25 other;
gcaguccucu guuaguuuug cauaguugca cuacaagaag aauguaguug ugcaaaucua 60
ugcaaaacug augguggccu gc 82
//
ID ssc-mir-20a standard; RNA; SSC; 71 BP.
XX
AC MI0002423;
XX
DE Sus scrofa miR-20a stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [3]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [4]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [5]
RX PUBMED; 25230983.
RA Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M;
RT "The characteristics of the porcine (Sus scrofa) liver miRNAome with the
RT use of next generation sequencing";
RL J Appl Genet. 56:239-252(2015).
XX
DR ENTREZGENE; 100170409; MIR20.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0002129"
FT /product="ssc-miR-20a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2,4], cloned [3]"
FT /similarity="MI0000076"
FT miRNA 44..66
FT /accession="MIMAT0037316"
FT /product="ssc-miR-20a-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 71 BP; 20 A; 11 C; 16 G; 0 T; 24 other;
guagcacuaa agugcuuaua gugcagguag uguuuaguua ucuacugcau uaugagcacu 60
uaaaguacug c 71
//
ID ssc-mir-216-1 standard; RNA; SSC; 105 BP.
XX
AC MI0002424;
XX
DE Sus scrofa miR-216-1 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19196471.
RA Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva
RA U, Zhang W, Sunkar R;
RT "Cloning, characterization and expression analysis of porcine microRNAs";
RL BMC Genomics. 10:65(2009).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
DR ENTREZGENE; 100316589; MIR216.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0002130"
FT /product="ssc-miR-216"
FT /evidence=experimental
FT /experiment="454 [2], Illumina [3]"
FT /similarity="MI0000292"
XX
SQ Sequence 105 BP; 24 A; 25 C; 25 G; 0 T; 31 other;
gauggcugug aguuggcuua aucucagcug gcaacuguga gauguucaua caauccccca 60
caguggucuc ugggauuaug cuaaacagag caauuuccuu gcccu 105
//
ID ssc-mir-217-1 standard; RNA; SSC; 107 BP.
XX
AC MI0002425;
XX
DE Sus scrofa miR-217-1 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19196471.
RA Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva
RA U, Zhang W, Sunkar R;
RT "Cloning, characterization and expression analysis of porcine microRNAs";
RL BMC Genomics. 10:65(2009).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
DR ENTREZGENE; 100316551; MIR217.
XX
FH Key Location/Qualifiers
FH
FT miRNA 32..55
FT /accession="MIMAT0002131"
FT /product="ssc-miR-217"
FT /evidence=experimental
FT /experiment="454 [2], Illumina [3]"
FT /similarity="MI0000293"
XX
SQ Sequence 107 BP; 34 A; 19 C; 20 G; 0 T; 34 other;
auaauuauua cagaguuuuu gaugucgcag auacugcauc aggaacugau uggauaagaa 60
uuggucacca ucaguucuua augcauugcc uucagcaucu aaacaag 107
//
ID ssc-mir-224 standard; RNA; SSC; 81 BP.
XX
AC MI0002426;
XX
DE Sus scrofa miR-224 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
DR ENTREZGENE; 100316552; MIR224.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0002132"
FT /product="ssc-miR-224"
FT /evidence=not_experimental
FT /similarity="MI0000301"
XX
SQ Sequence 81 BP; 19 A; 16 C; 20 G; 0 T; 26 other;
gggcuuucaa gucacuagug guuccguuua guagaagguu uugcauuguu ucaaaauggu 60
gcccuaguga cuacaaagcc c 81
//
ID ssc-mir-23a standard; RNA; SSC; 70 BP.
XX
AC MI0002427;
XX
DE Sus scrofa miR-23a stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 18548309.
RA Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS;
RT "Identification and characterization of new microRNAs from pig";
RL Mamm Genome. 19:570-580(2008).
XX
RN [3]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [4]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [5]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [6]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316598; MIR23A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 42..62
FT /accession="MIMAT0002133"
FT /product="ssc-miR-23a"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [3,5-6]"
FT /similarity="MI0000079"
XX
SQ Sequence 70 BP; 13 A; 18 C; 21 G; 0 T; 18 other;
cggcuggggu uccuggggau gggauuugcu gccugucaca aaucacauug ccagggauuu 60
ccaaucgacc 70
//
ID ssc-mir-24-1 standard; RNA; SSC; 72 BP.
XX
AC MI0002428;
XX
DE Sus scrofa miR-24-1 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 18548309.
RA Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS;
RT "Identification and characterization of new microRNAs from pig";
RL Mamm Genome. 19:570-580(2008).
XX
RN [3]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [4]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [5]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [6]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316553; MIR24-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..35
FT /accession="MIMAT0015210"
FT /product="ssc-miR-24-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [3,5-6]"
FT miRNA 50..71
FT /accession="MIMAT0002134"
FT /product="ssc-miR-24-3p"
FT /evidence=experimental
FT /experiment="cloned [2,4], Illumina [3,5-6]"
FT /similarity="MI0000081"
XX
SQ Sequence 72 BP; 16 A; 20 C; 19 G; 0 T; 17 other;
cucugccucc cgugccuacu gagcugaaac acaguugauu ugugcagacu ggcucaguuc 60
agcaggaaca gg 72
//
ID ssc-mir-26a standard; RNA; SSC; 84 BP.
XX
AC MI0002429;
XX
DE Sus scrofa miR-26a stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316605; MIR26A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002135"
FT /product="ssc-miR-26a"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000750"
XX
SQ Sequence 84 BP; 15 A; 16 C; 24 G; 0 T; 29 other;
ggcuguggcu ggauucaagu aauccaggau aggcuguuuc caucugugag gccuauucuu 60
gauuacuugu uucuggaggc agcu 84
//
ID ssc-mir-28 standard; RNA; SSC; 86 BP.
XX
AC MI0002430;
XX
DE Sus scrofa miR-28 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [4]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316590; MIR28.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002136"
FT /product="ssc-miR-28-5p"
FT /evidence=experimental
FT /experiment="Illumina [2-3]"
FT /similarity="MI0000086"
FT miRNA 54..75
FT /accession="MIMAT0015211"
FT /product="ssc-miR-28-3p"
FT /evidence=experimental
FT /experiment="Illumina [2-4]"
XX
SQ Sequence 86 BP; 14 A; 25 C; 22 G; 0 T; 25 other;
gguccuugcc cucaaggagc ucacagucua uugaguugcc uuucugucuu ccccacuaga 60
uugugagcuc cuggagggca ggcacu 86
//
ID ssc-mir-29b-1 standard; RNA; SSC; 81 BP.
XX
AC MI0002431;
XX
DE Sus scrofa miR-29b-1 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [3]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [4]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [5]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316554; MIR29B.
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..73
FT /accession="MIMAT0002137"
FT /product="ssc-miR-29b"
FT /evidence=experimental
FT /experiment="Illumina [2,4-5], cloned [3]"
FT /similarity="MI0000105"
XX
SQ Sequence 81 BP; 20 A; 10 C; 22 G; 0 T; 29 other;
cuucaggaag cugguuucau auggugguuu agauuuaaaa agugauuguc uagcaccauu 60
ugaaaucagu guucuugggg g 81
//
ID ssc-mir-301 standard; RNA; SSC; 82 BP.
XX
AC MI0002432;
XX
DE Sus scrofa miR-301 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
DR ENTREZGENE; 100316555; MIR301.
XX
FH Key Location/Qualifiers
FH
FT miRNA 48..70
FT /accession="MIMAT0002138"
FT /product="ssc-miR-301"
FT /evidence=not_experimental
FT /similarity="MI0000745"
XX
SQ Sequence 82 BP; 25 A; 19 C; 14 G; 0 T; 24 other;
gcuaacaaau gcucugacuu uauugcacua cuguacuuua cagcuaccag uccaauagua 60
uugucaaagc aucugagagc ag 82
//
ID ssc-mir-323 standard; RNA; SSC; 86 BP.
XX
AC MI0002433;
XX
DE Sus scrofa miR-323 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316556; MIR323.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..71
FT /accession="MIMAT0002139"
FT /product="ssc-miR-323"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000807"
XX
SQ Sequence 86 BP; 14 A; 19 C; 25 G; 0 T; 28 other;
uugguacuug gagagaggug guccguggcg cguucgcuuu auuuauggcg cacauuacac 60
ggucgaccuc uuugcgguau cuaauc 86
//
ID ssc-mir-326 standard; RNA; SSC; 91 BP.
XX
AC MI0002434;
XX
DE Sus scrofa miR-326 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316606; MIR326.
XX
FH Key Location/Qualifiers
FH
FT miRNA 56..75
FT /accession="MIMAT0002140"
FT /product="ssc-miR-326"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000808"
XX
SQ Sequence 91 BP; 10 A; 26 C; 32 G; 0 T; 23 other;
ucugucuguu gggcuggagg cagggccuuu gugcaggcgg guugugcuca gaucgccucu 60
gggcccuucc uccagcccag aggcggauuc a 91
//
ID ssc-mir-7-2 standard; RNA; SSC; 109 BP.
XX
AC MI0002435;
XX
DE Sus scrofa miR-7-2 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [3]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
RN [4]
RX PUBMED; 25230983.
RA Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M;
RT "The characteristics of the porcine (Sus scrofa) liver miRNAome with the
RT use of next generation sequencing";
RL J Appl Genet. 56:239-252(2015).
XX
DR ENTREZGENE; 100316557; MIR7.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..46
FT /accession="MIMAT0002141"
FT /product="ssc-miR-7-5p"
FT /evidence=experimental
FT /experiment="Illumina [2-3]"
FT /similarity="MI0000263"
FT miRNA 65..86
FT /accession="MIMAT0037317"
FT /product="ssc-miR-7-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 109 BP; 29 A; 20 C; 25 G; 0 T; 35 other;
uggauguugg ucuaguucug uguggaagac uagugauuuu guuguuuuua gauaacuaaa 60
ucgacaacaa aucacagucu gccauauggc acaggccaug ccucuacag 109
//
ID ssc-mir-95 standard; RNA; SSC; 81 BP.
XX
AC MI0002436;
XX
DE Sus scrofa miR-95 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
DR ENTREZGENE; 100316591; MIR95.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..70
FT /accession="MIMAT0002142"
FT /product="ssc-miR-95"
FT /evidence=experimental
FT /experiment="Illumina [2-3]"
FT /similarity="MI0000097"
XX
SQ Sequence 81 BP; 23 A; 14 C; 19 G; 0 T; 25 other;
aacacagugg gcgcucaaua aauguuuguu gaauugagau gcguuaaauu caacggguau 60
uuauugagca cccacucugu g 81
//
ID ssc-mir-140 standard; RNA; SSC; 70 BP.
XX
AC MI0002437;
XX
DE Sus scrofa miR-140 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 18548309.
RA Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS;
RT "Identification and characterization of new microRNAs from pig";
RL Mamm Genome. 19:570-580(2008).
XX
RN [3]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [4]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316558; MIR140.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..27
FT /accession="MIMAT0002143"
FT /product="ssc-miR-140-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3]"
FT /similarity="MI0000456"
FT miRNA 45..67
FT /accession="MIMAT0006786"
FT /product="ssc-miR-140-3p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
XX
SQ Sequence 70 BP; 15 A; 18 C; 19 G; 0 T; 18 other;
ccugccagug guuuuacccu augguagguu acgucaugcu guucuaccac aggguagaac 60
cacggacagg 70
//
ID ssc-mir-181c standard; RNA; SSC; 87 BP.
XX
AC MI0002438;
XX
DE Sus scrofa miR-181c stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [4]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316599; MIR181C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002144"
FT /product="ssc-miR-181c"
FT /evidence=experimental
FT /experiment="Illumina [2-4]"
FT /similarity="MI0000271"
XX
SQ Sequence 87 BP; 19 A; 21 C; 30 G; 0 T; 17 other;
caaggguuug ggggaacauu caaccugucg gugaguuugg gcagcucagg caaaccaucg 60
accguugagu ggaccccgag gccugga 87
//
ID ssc-mir-183 standard; RNA; SSC; 70 BP.
XX
AC MI0002439;
XX
DE Sus scrofa miR-183 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [3]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316559; MIR183.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0002145"
FT /product="ssc-miR-183"
FT /evidence=experimental
FT /experiment="Illumina [2-3]"
FT /similarity="MI0000928"
XX
SQ Sequence 70 BP; 20 A; 14 C; 19 G; 0 T; 17 other;
cuguguaugg cacugguaga auucacugug aacagucucg gucagugaau uaccgaaggg 60
ccauaaacag 70
//
ID ssc-mir-205 standard; RNA; SSC; 69 BP.
XX
AC MI0002440;
XX
DE Sus scrofa miR-205 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19196471.
RA Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva
RA U, Zhang W, Sunkar R;
RT "Cloning, characterization and expression analysis of porcine microRNAs";
RL BMC Genomics. 10:65(2009).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [4]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316607; MIR205.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0002146"
FT /product="ssc-miR-205"
FT /evidence=experimental
FT /experiment="454 [2], Illumina [3-4]"
FT /similarity="MI0000285"
XX
SQ Sequence 69 BP; 15 A; 20 C; 15 G; 0 T; 19 other;
cucuuguccu ucauuccacc ggagucuguc ucauacccaa ccagauuuca guggagugaa 60
gcucaggag 69
//
ID ssc-mir-214 standard; RNA; SSC; 110 BP.
XX
AC MI0002441;
XX
DE Sus scrofa miR-214 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [3]
RX PUBMED; 25230983.
RA Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M;
RT "The characteristics of the porcine (Sus scrofa) liver miRNAome with the
RT use of next generation sequencing";
RL J Appl Genet. 56:239-252(2015).
XX
DR ENTREZGENE; 100316560; MIR214.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..51
FT /accession="MIMAT0037318"
FT /product="ssc-miR-214-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 71..91
FT /accession="MIMAT0002147"
FT /product="ssc-miR-214-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000290"
XX
SQ Sequence 110 BP; 24 A; 34 C; 29 G; 0 T; 23 other;
ggccuggcug gacggaguug ucaugugucu gccugucuac acuugcugug cagaacaucc 60
gcucaccugu acagcaggca cagacaggca gucacaugac aacccagccu 110
//
ID ssc-mir-27a standard; RNA; SSC; 82 BP.
XX
AC MI0002442;
XX
DE Sus scrofa miR-27a stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [4]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316592; MIR27A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..74
FT /accession="MIMAT0002148"
FT /product="ssc-miR-27a"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0000578"
XX
SQ Sequence 82 BP; 14 A; 22 C; 28 G; 0 T; 18 other;
uggccugggg agcagggcuu agcugcuugu gagcaggucc acagcaaguc guguucacag 60
uggcuaaguu ccgcccccug ga 82
//
ID ssc-mir-32 standard; RNA; SSC; 70 BP.
XX
AC MI0002443;
XX
DE Sus scrofa miR-32 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
DR ENTREZGENE; 100316561; MIR32.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0002149"
FT /product="ssc-miR-32"
FT /evidence=not_experimental
FT /similarity="MI0000090"
XX
SQ Sequence 70 BP; 16 A; 11 C; 17 G; 0 T; 26 other;
ggagauauug cacauuacua aguugcaugu ugucacggcc ucagugcaau uuagugugug 60
ugauauuuuc 70
//
ID ssc-mir-325 standard; RNA; SSC; 94 BP.
XX
AC MI0002444;
XX
DE Sus scrofa miR-325 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
DR ENTREZGENE; 100316562; MIR325.
XX
FH Key Location/Qualifiers
FH
FT miRNA 12..34
FT /accession="MIMAT0002150"
FT /product="ssc-miR-325"
FT /evidence=not_experimental
FT /similarity="MI0000596"
XX
SQ Sequence 94 BP; 20 A; 17 C; 23 G; 0 T; 34 other;
agugcuuggu uccuaguagg uguucaguaa guguuuguga cauaauucgu uuauugagca 60
ccuccuauca aucaagcacu gugcuagguu cugg 94
//
ID ssc-let-7c standard; RNA; SSC; 94 BP.
XX
AC MI0002445;
XX
DE Sus scrofa let-7c stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19196471.
RA Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva
RA U, Zhang W, Sunkar R;
RT "Cloning, characterization and expression analysis of porcine microRNAs";
RL BMC Genomics. 10:65(2009).
XX
RN [3]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [4]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [5]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [6]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100170412; MIRLET7C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..37
FT /accession="MIMAT0002151"
FT /product="ssc-let-7c"
FT /evidence=experimental
FT /experiment="454 [2], Illumina [3,5-6], cloned [4]"
FT /similarity="MI0000559"
XX
SQ Sequence 94 BP; 19 A; 17 C; 27 G; 0 T; 31 other;
ugugugcauc cggguugagg uaguagguug uaugguuuag aguuacaccg ugggaguuaa 60
cuguacaacc uucuagcuuu ccuuggagca cacu 94
//
ID ssc-let-7f-1 standard; RNA; SSC; 83 BP.
XX
AC MI0002446;
XX
DE Sus scrofa let-7f-1 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [4]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316608; MIRLET7F.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0002152"
FT /product="ssc-let-7f-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0000068"
XX
SQ Sequence 83 BP; 20 A; 15 C; 20 G; 0 T; 28 other;
ugugggauga gguaguagau uguauaguuu uagggucaua ccccaucuug gagauaacua 60
uacagucuac ugucuuuccc acg 83
//
ID ssc-let-7i standard; RNA; SSC; 85 BP.
XX
AC MI0002447;
XX
DE Sus scrofa let-7i stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [4]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
RN [5]
RX PUBMED; 25230983.
RA Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M;
RT "The characteristics of the porcine (Sus scrofa) liver miRNAome with the
RT use of next generation sequencing";
RL J Appl Genet. 56:239-252(2015).
XX
DR ENTREZGENE; 100316600; MIRLET7I.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..24
FT /accession="MIMAT0002153"
FT /product="ssc-let-7i-5p"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0000138"
FT miRNA 62..83
FT /accession="MIMAT0037319"
FT /product="ssc-let-7i-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 85 BP; 13 A; 17 C; 29 G; 0 T; 26 other;
cuggcugagg uaguaguuug ugcuguuggu cggguuguga cauugcccgc uguggagaua 60
acugcgcaag cuacugccuu gcuag 85
//
ID ssc-mir-103-1 standard; RNA; SSC; 82 BP.
XX
AC MI0002448;
XX
DE Sus scrofa miR-103-1 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [3]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [4]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [5]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316563; MIR103-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..72
FT /accession="MIMAT0002154"
FT /product="ssc-miR-103"
FT /evidence=experimental
FT /experiment="Illumina [2,4-5], cloned [3]"
FT /similarity="MI0000587"
XX
SQ Sequence 82 BP; 17 A; 20 C; 21 G; 0 T; 24 other;
cuuacugccc ucggcuucuu uacagugcug ccuuguugca uauggaucaa gcagcauugu 60
acagggcuau gaaggcacug ag 82
//
ID ssc-mir-107 standard; RNA; SSC; 87 BP.
XX
AC MI0002449;
XX
DE Sus scrofa miR-107 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 18548309.
RA Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS;
RT "Identification and characterization of new microRNAs from pig";
RL Mamm Genome. 19:570-580(2008).
XX
RN [3]
RX PUBMED; 19196471.
RA Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva
RA U, Zhang W, Sunkar R;
RT "Cloning, characterization and expression analysis of porcine microRNAs";
RL BMC Genomics. 10:65(2009).
XX
RN [4]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [5]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [6]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100170413; MIR107.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..74
FT /accession="MIMAT0002155"
FT /product="ssc-miR-107"
FT /evidence=experimental
FT /experiment="cloned [2], 454 [3], Illumina [4-6]"
FT /similarity="MI0000684"
XX
SQ Sequence 87 BP; 19 A; 20 C; 21 G; 0 T; 27 other;
uucucucugc uuucagcuuc uuuacagugu ugccuugugg cauggaguuc aagcagcauu 60
guacagggcu aucaaagcac agagagc 87
//
ID ssc-mir-124a-2 standard; RNA; SSC; 85 BP.
XX
AC MI0002450;
XX
DE Sus scrofa miR-124a-2 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19196471.
RA Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva
RA U, Zhang W, Sunkar R;
RT "Cloning, characterization and expression analysis of porcine microRNAs";
RL BMC Genomics. 10:65(2009).
XX
RN [3]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100170414; MIR124A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..73
FT /accession="MIMAT0002156"
FT /product="ssc-miR-124a"
FT /evidence=experimental
FT /experiment="454 [1], Illumina [3]"
FT /similarity="MI0000443"
XX
SQ Sequence 85 BP; 21 A; 21 C; 22 G; 0 T; 21 other;
aggccucucu cuccguguuc acagcggacc uugauuuaaa uguccauaca auuaaggcac 60
gcggugaaug ccaagaaugg ggcug 85
//
ID ssc-mir-128-1 standard; RNA; SSC; 82 BP.
XX
AC MI0002451;
XX
DE Sus scrofa miR-128-1 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19196471.
RA Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva
RA U, Zhang W, Sunkar R;
RT "Cloning, characterization and expression analysis of porcine microRNAs";
RL BMC Genomics. 10:65(2009).
XX
RN [3]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [4]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [5]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [6]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316593; MIR128-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..70
FT /accession="MIMAT0002157"
FT /product="ssc-miR-128"
FT /evidence=experimental
FT /experiment="454 [2], Illumina [3,5-6], cloned [4]"
FT /similarity="MI0000447"
XX
SQ Sequence 82 BP; 13 A; 19 C; 22 G; 0 T; 28 other;
ugagcuguug gauucggggc cguagcacug ucugagaggu uuacauuucu cacagugaac 60
cggucucuuu uucagcugcu uc 82
//
ID ssc-mir-136 standard; RNA; SSC; 82 BP.
XX
AC MI0002452;
XX
DE Sus scrofa miR-136 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [4]
RX PUBMED; 25230983.
RA Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M;
RT "The characteristics of the porcine (Sus scrofa) liver miRNAome with the
RT use of next generation sequencing";
RL J Appl Genet. 56:239-252(2015).
XX
DR ENTREZGENE; 100316564; MIR136.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0002158"
FT /product="ssc-miR-136-5p"
FT /evidence=experimental
FT /experiment="Illumina [2-3]"
FT /similarity="MI0001523"
FT miRNA 49..70
FT /accession="MIMAT0037320"
FT /product="ssc-miR-136-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 82 BP; 16 A; 19 C; 19 G; 0 T; 28 other;
ugagcccucg gaggacucca uuuguuuuga ugauggauuc uuacgcucca ucaucgucuc 60
aaaugagucu ucagaggguu cu 82
//
ID ssc-mir-139 standard; RNA; SSC; 68 BP.
XX
AC MI0002453;
XX
DE Sus scrofa miR-139 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [3]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [4]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [5]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316565; MIR139.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0002159"
FT /product="ssc-miR-139-5p"
FT /evidence=experimental
FT /experiment="Illumina [2,4-5], cloned [3]"
FT /similarity="MI0000261"
FT miRNA 43..65
FT /accession="MIMAT0022921"
FT /product="ssc-miR-139-3p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
XX
SQ Sequence 68 BP; 11 A; 16 C; 24 G; 0 T; 17 other;
guguauucua cagugcacgu gucuccagug uggcucggag gcuggagacg cggcccuguu 60
ggaguaac 68
//
ID ssc-mir-153 standard; RNA; SSC; 87 BP.
XX
AC MI0002454;
XX
DE Sus scrofa miR-153 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
DR ENTREZGENE; 100316609; MIR153.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..72
FT /accession="MIMAT0002160"
FT /product="ssc-miR-153"
FT /evidence=not_experimental
FT /similarity="MI0000464"
XX
SQ Sequence 87 BP; 23 A; 14 C; 24 G; 0 T; 26 other;
agcgguggcc agugucauuu uugugauguu gcagcuagua auaugagccc aguugcauag 60
ucacaaaagu gaucauugga aacugug 87
//
ID ssc-mir-18a standard; RNA; SSC; 92 BP.
XX
AC MI0002455;
XX
DE Sus scrofa miR-18a stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [4]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100170410; MIR18A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002161"
FT /product="ssc-miR-18a"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0000567"
XX
SQ Sequence 92 BP; 22 A; 16 C; 22 G; 0 T; 32 other;
gugcuuuuug uucuaaggug caucuagugc agauagugaa guagauuagc aucuacugcc 60
cuaagugcuc cuucuggcau aagaaguuau gu 92
//
ID ssc-mir-186 standard; RNA; SSC; 82 BP.
XX
AC MI0002456;
XX
DE Sus scrofa miR-186 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [4]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
RN [5]
RX PUBMED; 25230983.
RA Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M;
RT "The characteristics of the porcine (Sus scrofa) liver miRNAome with the
RT use of next generation sequencing";
RL J Appl Genet. 56:239-252(2015).
XX
DR ENTREZGENE; 100316566; MIR186.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0002162"
FT /product="ssc-miR-186-5p"
FT /evidence=experimental
FT /experiment="Illumina [2-4]"
FT /similarity="MI0000931"
FT miRNA 54..75
FT /accession="MIMAT0037321"
FT /product="ssc-miR-186-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 82 BP; 20 A; 11 C; 15 G; 0 T; 36 other;
ugcuuauaac uuuccaaaga auucuccuuu ugggcuuuau gauuuuauuu uaagcccaaa 60
ggugaauuuu uugggaaguu ug 82
//
ID ssc-mir-196a-2 standard; RNA; SSC; 107 BP.
XX
AC MI0002457;
XX
DE Sus scrofa miR-196a-2 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
DR ENTREZGENE; 100316567; MIR196A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0002163"
FT /product="ssc-miR-196a"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000940"
XX
SQ Sequence 107 BP; 22 A; 19 C; 31 G; 0 T; 35 other;
uugcucagcu gaucuguggc uuagguaguu ucauguuguu gggauugagu uuugaacucg 60
gcaacaagaa acugccugag uuacaucagu cgguuaucgu cgagggc 107
//
ID ssc-mir-204 standard; RNA; SSC; 109 BP.
XX
AC MI0002458;
XX
DE Sus scrofa miR-204 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19196471.
RA Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva
RA U, Zhang W, Sunkar R;
RT "Cloning, characterization and expression analysis of porcine microRNAs";
RL BMC Genomics. 10:65(2009).
XX
RN [3]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [4]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [5]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316594; MIR204.
XX
FH Key Location/Qualifiers
FH
FT miRNA 32..53
FT /accession="MIMAT0002164"
FT /product="ssc-miR-204"
FT /evidence=experimental
FT /experiment="454 [2], Illumina [3-5]"
FT /similarity="MI0000284"
XX
SQ Sequence 109 BP; 25 A; 25 C; 29 G; 0 T; 30 other;
ggcuacaguc cuucucaugu gacucgugga cuucccuuug ucauccuaug ccugagaaua 60
uaugaaggag gcugggaagg caaagggacg uucaauuguc aucacuggc 109
//
ID ssc-mir-21 standard; RNA; SSC; 92 BP.
XX
AC MI0002459;
XX
DE Sus scrofa miR-21 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 18548309.
RA Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS;
RT "Identification and characterization of new microRNAs from pig";
RL Mamm Genome. 19:570-580(2008).
XX
RN [3]
RX PUBMED; 19196471.
RA Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva
RA U, Zhang W, Sunkar R;
RT "Cloning, characterization and expression analysis of porcine microRNAs";
RL BMC Genomics. 10:65(2009).
XX
RN [4]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [5]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [6]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [7]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
RN [8]
RX PUBMED; 25230983.
RA Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M;
RT "The characteristics of the porcine (Sus scrofa) liver miRNAome with the
RT use of next generation sequencing";
RL J Appl Genet. 56:239-252(2015).
XX
DR ENTREZGENE; 100316568; MIR21.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..39
FT /accession="MIMAT0002165"
FT /product="ssc-miR-21-5p"
FT /evidence=experimental
FT /experiment="cloned [2,5], 454 [3], Illumina [4,6-7]"
FT /similarity="MI0000850"
FT miRNA 56..76
FT /accession="MIMAT0037322"
FT /product="ssc-miR-21-3p"
FT /evidence=experimental
FT /experiment="Illumina [8]"
XX
SQ Sequence 92 BP; 19 A; 19 C; 24 G; 0 T; 30 other;
uguaccaccu ugucggguag cuuaucagac ugauguugac uguugaaucu cauggcaaca 60
gcagucgaug ggcugucuga cauuuuggua uc 92
//
ID ssc-mir-29c standard; RNA; SSC; 88 BP.
XX
AC MI0002460;
XX
DE Sus scrofa miR-29c stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [4]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316569; MIR29C.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..75
FT /accession="MIMAT0002166"
FT /product="ssc-miR-29c"
FT /evidence=experimental
FT /experiment="cloned [2], Illumina [3-4]"
FT /similarity="MI0000577"
XX
SQ Sequence 88 BP; 18 A; 17 C; 22 G; 0 T; 31 other;
aucucuuaca caggcugacc gauuucuccu gguguucaga gucuguuuuu gucuagcacc 60
auuugaaauc gguuaugaug uaggggga 88
//
ID ssc-mir-30c-2 standard; RNA; SSC; 80 BP.
XX
AC MI0002461;
XX
DE Sus scrofa miR-30c-2 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19196471.
RA Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva
RA U, Zhang W, Sunkar R;
RT "Cloning, characterization and expression analysis of porcine microRNAs";
RL BMC Genomics. 10:65(2009).
XX
RN [3]
RX PUBMED; 19917043.
RA Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C,
RA Thomsen B;
RT "MicroRNA identity and abundance in porcine skeletal muscles determined by
RT deep sequencing";
RL Anim Genet. 41:159-168(2010).
XX
RN [4]
RX PUBMED; 20180025.
RA Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang
RA KY, Lee YS;
RT "Cloning and characterization of microRNAs from porcine skeletal muscle
RT and adipose tissue";
RL Mol Biol Rep. 37:3567-3574(2010).
XX
RN [5]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [6]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316601; MIR30C-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..32
FT /accession="MIMAT0002167"
FT /product="ssc-miR-30c-5p"
FT /evidence=experimental
FT /experiment="454 [2], Illumina [3,5-6], cloned [4]"
FT /similarity="MI0000871"
FT miRNA 50..71
FT /accession="MIMAT0022922"
FT /product="ssc-miR-30c-3p"
FT /evidence=experimental
FT /experiment="Illumina [5]"
XX
SQ Sequence 80 BP; 23 A; 18 C; 18 G; 0 T; 21 other;
gacagauacu guaaacaucc uacacucuca gcuguggaaa guaagaaagc ugggagaagg 60
cuguuuacuc ucucugccuu 80
//
ID ssc-mir-9-1 standard; RNA; SSC; 89 BP.
XX
AC MI0002462;
XX
DE Sus scrofa miR-9-1 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19196471.
RA Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva
RA U, Zhang W, Sunkar R;
RT "Cloning, characterization and expression analysis of porcine microRNAs";
RL BMC Genomics. 10:65(2009).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [4]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100170406; MIR9-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0002168"
FT /product="ssc-miR-9-1"
FT /evidence=experimental
FT /experiment="454 [2], Illumina [3-4]"
FT /similarity="MI0000466"
XX
SQ Sequence 89 BP; 25 A; 13 C; 23 G; 0 T; 28 other;
cgggguuggu uguuaucuuu gguuaucuag cuguaugagu gguguggagu cuucauaaag 60
cuagauaacc gaaaguaaaa auaacccca 89
//
ID ssc-mir-9-2 standard; RNA; SSC; 87 BP.
XX
AC MI0002463;
XX
DE Sus scrofa miR-9-2 stem-loop
XX
RN [1]
RX PUBMED; 15885146.
RA Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt
RA HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S,
RA Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S,
RA Yang H, Bolund L;
RT "Pigs in sequence space: a 0.66X coverage pig genome survey based on
RT shotgun sequencing";
RL BMC Genomics. 6:70(2005).
XX
RN [2]
RX PUBMED; 19196471.
RA Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva
RA U, Zhang W, Sunkar R;
RT "Cloning, characterization and expression analysis of porcine microRNAs";
RL BMC Genomics. 10:65(2009).
XX
RN [3]
RX PUBMED; 21312241.
RA Li G, Li Y, Li X, Ning X, Li M, Yang G;
RT "MicroRNA identity and abundance in developing swine adipose tissue as
RT determined by Solexa sequencing";
RL J Cell Biochem. 112:1318-1328(2011).
XX
RN [4]
RX PUBMED; 24499489.
RA Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT,
RA Jiang QY, Zhang YL;
RT "Exploration of microRNAs in porcine milk exosomes";
RL BMC Genomics. 15:100(2014).
XX
DR ENTREZGENE; 100316610; MIR9-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0002169"
FT /product="ssc-miR-9-2"
FT /evidence=experimental
FT /experiment="454 [2], Illumina [3-4]"
FT /similarity="MI0000467"
XX
SQ Sequence 87 BP; 26 A; 13 C; 19 G; 0 T; 29 other;
ggaagcgagu uguuaucuuu gguuaucuag cuguaugagu guauuggucu ucauaaagcu 60
agauaaccga aaguaaaaac uccuuca 87
//
ID hsa-mir-412 standard; RNA; HSA; 91 BP.
XX
AC MI0002464;
XX
DE Homo sapiens miR-412 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 23226537.
RA Ple H, Landry P, Benham A, Coarfa C, Gunaratne PH, Provost P;
RT "The repertoire and features of human platelet microRNAs";
RL PLoS One. 7:e50746(2012).
XX
DR HGNC; 32064; MIR412.
DR ENTREZGENE; 574433; MIR412.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..41
FT /accession="MIMAT0026557"
FT /product="hsa-miR-412-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 54..76
FT /accession="MIMAT0002170"
FT /product="hsa-miR-412-3p"
FT /evidence=not_experimental
FT /similarity="MI0001164"
XX
SQ Sequence 91 BP; 18 A; 21 C; 27 G; 0 T; 25 other;
cugggguacg gggauggaug gucgaccagu uggaaaguaa uuguuucuaa uguacuucac 60
cugguccacu agccguccgu auccgcugca g 91
//
ID hsa-mir-410 standard; RNA; HSA; 80 BP.
XX
AC MI0002465;
XX
DE Homo sapiens miR-410 stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [3]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [4]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 32065; MIR410.
DR ENTREZGENE; 574434; MIR410.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..34
FT /accession="MIMAT0026558"
FT /product="hsa-miR-410-5p"
FT /evidence=experimental
FT /experiment="Illumina [6]"
FT miRNA 50..70
FT /accession="MIMAT0002171"
FT /product="hsa-miR-410-3p"
FT /evidence=experimental
FT /experiment="array-cloned [2], cloned [3-5], Northern [3],
FT Illumina [6]"
FT /similarity="MI0001161"
XX
SQ Sequence 80 BP; 21 A; 13 C; 20 G; 0 T; 26 other;
gguaccugag aagagguugu cugugaugag uucgcuuuua uuaaugacga auauaacaca 60
gauggccugu uuucaguacc 80
//
ID hsa-mir-376b standard; RNA; HSA; 100 BP.
XX
AC MI0002466;
XX
DE Homo sapiens miR-376b stem-loop
XX
RN [1]
RX PUBMED; 15891114.
RA Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A,
RA Brownstein MJ, Tuschl T, Margalit H;
RT "Clustering and conservation patterns of human microRNAs";
RL Nucleic Acids Res. 33:2697-2706(2005).
XX
RN [2]
RX PUBMED; 17322061.
RA Kawahara Y, Zinshteyn B, Sethupathy P, Iizasa H, Hatzigeorgiou AG,
RA Nishikura K;
RT "Redirection of silencing targets by adenosine-to-inosine editing of
RT miRNAs";
RL Science. 315:1137-1140(2007).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 22282338.
RA Voellenkle C, Rooij Jv, Guffanti A, Brini E, Fasanaro P, Isaia E, Croft L,
RA David M, Capogrossi MC, Moles A, Felsani A, Martelli F;
RT "Deep-sequencing of endothelial cells exposed to hypoxia reveals the
RT complexity of known and novel microRNAs";
RL RNA. 18:472-484(2012).
XX
DR HGNC; 32066; MIR376B.
DR ENTREZGENE; 574435; MIR376B.
XX
CC The mature miR-376b products have been shown to be modified by A to I
CC edits [2].
XX
FH Key Location/Qualifiers
FH
FT modified_base 67
FT /mod_base=i
FT miRNA 24..45
FT /accession="MIMAT0022923"
FT /product="hsa-miR-376b-5p"
FT /evidence=experimental
FT /experiment="SOLiD [4]"
FT miRNA 62..83
FT /accession="MIMAT0002172"
FT /product="hsa-miR-376b-3p"
FT /evidence=experimental
FT /experiment="cloned [3], SOLiD [4]"
FT /similarity="MI0001162"
XX
SQ Sequence 100 BP; 26 A; 17 C; 18 G; 0 T; 39 other;
caguccuucu uugguauuua aaacguggau auuccuucua uguuuacgug auuccugguu 60
aaucauagag gaaaauccau guuuucagua ucaaaugcug 100
//
ID hsa-mir-483 standard; RNA; HSA; 76 BP.
XX
AC MI0002467;
XX
DE Homo sapiens miR-483 stem-loop
XX
RN [1]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32340; MIR483.
DR ENTREZGENE; 619552; MIR483.
XX
CC The mature sequence shown here represents the most commonly cloned form
CC from large-scale cloning studies [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0004761"
FT /product="hsa-miR-483-5p"
FT /evidence=experimental
FT /experiment="cloned [2]"
FT miRNA 48..68
FT /accession="MIMAT0002173"
FT /product="hsa-miR-483-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
XX
SQ Sequence 76 BP; 14 A; 25 C; 21 G; 0 T; 16 other;
gagggggaag acgggaggaa agaagggagu gguuccauca cgccuccuca cuccucuccu 60
cccgucuucu ccucuc 76
//
ID hsa-mir-484 standard; RNA; HSA; 79 BP.
XX
AC MI0002468;
XX
DE Homo sapiens miR-484 stem-loop
XX
RN [1]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [3]
RX PUBMED; 17616659.
RA Lui WO, Pourmand N, Patterson BK, Fire A;
RT "Patterns of known and novel small RNAs in human cervical cancer";
RL Cancer Res. 67:6031-6043(2007).
XX
DR HGNC; 32341; MIR484.
DR ENTREZGENE; 619553; MIR484.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0002174"
FT /product="hsa-miR-484"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1]"
XX
SQ Sequence 79 BP; 13 A; 26 C; 21 G; 0 T; 19 other;
agccucguca ggcucagucc ccucccgaua aaccccuaaa uagggacuuu cccggggggu 60
gacccuggcu uuuuuggcg 79
//
ID hsa-mir-485 standard; RNA; HSA; 73 BP.
XX
AC MI0002469;
XX
DE Homo sapiens miR-485 stem-loop
XX
RN [1]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [2]
RX PUBMED; 15965474.
RA Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A,
RA Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z;
RT "Identification of hundreds of conserved and nonconserved human
RT microRNAs";
RL Nat Genet. 37:766-770(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32067; MIR485.
DR ENTREZGENE; 574436; MIR485.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..30
FT /accession="MIMAT0002175"
FT /product="hsa-miR-485-5p"
FT /evidence=experimental
FT /experiment="array-cloned [2], cloned [3]"
FT miRNA 46..67
FT /accession="MIMAT0002176"
FT /product="hsa-miR-485-3p"
FT /evidence=experimental
FT /experiment="cloned [1,3], array-cloned [2]"
XX
SQ Sequence 73 BP; 17 A; 17 C; 18 G; 0 T; 21 other;
acuuggagag aggcuggccg ugaugaauuc gauucaucaa agcgagucau acacggcucu 60
ccucucuuuu agu 73
//
ID hsa-mir-486-1 standard; RNA; HSA; 68 BP.
XX
AC MI0002470;
XX
DE Homo sapiens miR-486 stem-loop
XX
RN [1]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [2]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
DR HGNC; 32342; MIR486.
DR ENTREZGENE; 619554; MIR486.
XX
FH Key Location/Qualifiers
FH
FT miRNA 4..25
FT /accession="MIMAT0002177"
FT /product="hsa-miR-486-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2], Northern [1]"
FT miRNA 46..66
FT /accession="MIMAT0004762"
FT /product="hsa-miR-486-3p"
FT /evidence=experimental
FT /experiment="cloned [2]"
XX
SQ Sequence 68 BP; 12 A; 24 C; 19 G; 0 T; 13 other;
gcauccugua cugagcugcc ccgaggcccu ucaugcugcc cagcucgggg cagcucagua 60
caggauac 68
//
ID hsa-mir-487a standard; RNA; HSA; 80 BP.
XX
AC MI0002471;
XX
DE Homo sapiens miR-487a stem-loop
XX
RN [1]
RX PUBMED; 15978578.
RA Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X;
RT "Identification of human fetal liver miRNAs by a novel method";
RL FEBS Lett. 579:3849-3854(2005).
XX
RN [2]
RX PUBMED; 16274478.
RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
RA van Nimwegen E, Zavolan M;
RT "Identification of clustered microRNAs using an ab initio prediction
RT method";
RL BMC Bioinformatics. 6:267(2005).
XX
RN [3]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [4]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR HGNC; 32343; MIR487A.
DR ENTREZGENE; 619555; MIR487A.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0026559"
FT /product="hsa-miR-487a-5p"
FT /evidence=experimental
FT /experiment="Illumina [4]"
FT miRNA 49..70
FT /accession="MIMAT0002178"
FT /product="hsa-miR-487a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3], Northern [1], Illumina [4]"
XX
SQ Sequence 80 BP; 19 A; 15 C; 18 G; 0 T; 28 other;
gguacuugaa gagugguuau cccugcugug uucgcuuaau uuaugacgaa ucauacaggg 60
acauccaguu uuucaguauc 80
//
ID kshv-mir-K12-10a standard; RNA; VRL; 70 BP.
XX
AC MI0002472;
XX
DE Kaposi sarcoma-associated herpesvirus miR-K12-10a stem-loop
XX
RN [1]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [2]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [3]
RX PUBMED; 15994824.
RA Samols MA, Hu J, Skalsky RL, Renne R;
RT "Cloning and identification of a microRNA cluster within the
RT latency-associated region of Kaposi's sarcoma-associated herpesvirus";
RL J Virol. 79:9301-9305(2005).
XX
RN [4]
RX PUBMED; 16474131.
RA Cai X, Cullen BR;
RT "Transcriptional origin of Kaposi's sarcoma-associated herpesvirus
RT microRNAs";
RL J Virol. 80:2234-2242(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 19889781.
RA Umbach JL, Cullen BR;
RT "In-depth analysis of Kaposi's sarcoma-associated herpesvirus microRNA
RT expression provides insights into the mammalian microRNA-processing
RT machinery";
RL J Virol. 84:695-703(2010).
XX
RN [7]
RX PUBMED; 20566670.
RA Lin YT, Kincaid RP, Arasappan D, Dowd SE, Hunicke-Smith SP, Sullivan CS;
RT "Small RNA profiling reveals antisense transcription throughout the KSHV
RT genome and novel small RNAs";
RL RNA. 16:1540-1558(2010).
XX
CC Cai et al. define the likely miRNA primary transcripts in [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0015212"
FT /product="kshv-miR-K12-10a-5p"
FT /evidence=experimental
FT /experiment="Illumina [6], SOLiD [7]"
FT miRNA 46..67
FT /accession="MIMAT0002179"
FT /product="kshv-miR-K12-10a-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3,5], Illumina [6], SOLiD [7]"
XX
SQ Sequence 70 BP; 9 A; 19 C; 23 G; 0 T; 19 other;
cuggaggcuu ggggcgauac caccacucgu uugucuguug gcgauuagug uugucccccc 60
gaguggccag 70
//
ID kshv-mir-K12-10b standard; RNA; VRL; 70 BP.
XX
AC MI0002473;
XX
DE Kaposi sarcoma-associated herpesvirus miR-K12-10b stem-loop
XX
RN [1]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [2]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [3]
RX PUBMED; 16474131.
RA Cai X, Cullen BR;
RT "Transcriptional origin of Kaposi's sarcoma-associated herpesvirus
RT microRNAs";
RL J Virol. 80:2234-2242(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 19889781.
RA Umbach JL, Cullen BR;
RT "In-depth analysis of Kaposi's sarcoma-associated herpesvirus microRNA
RT expression provides insights into the mammalian microRNA-processing
RT machinery";
RL J Virol. 84:695-703(2010).
XX
RN [6]
RX PUBMED; 20566670.
RA Lin YT, Kincaid RP, Arasappan D, Dowd SE, Hunicke-Smith SP, Sullivan CS;
RT "Small RNA profiling reveals antisense transcription throughout the KSHV
RT genome and novel small RNAs";
RL RNA. 16:1540-1558(2010).
XX
CC Cai et al. define the likely miRNA primary transcripts in [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 46..67
FT /accession="MIMAT0002180"
FT /product="kshv-miR-K12-10b"
FT /evidence=experimental
FT /experiment="cloned [1-2,4], Illumina [5], SOLiD [6]"
XX
SQ Sequence 70 BP; 8 A; 19 C; 24 G; 0 T; 19 other;
cuggaggcuu ggggcgauac caccacucgu uugucuguug gcgauuggug uugucccccc 60
gaguggccag 70
//
ID kshv-mir-K12-11 standard; RNA; VRL; 71 BP.
XX
AC MI0002474;
XX
DE Kaposi sarcoma-associated herpesvirus miR-K12-11 stem-loop
XX
RN [1]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [2]
RX PUBMED; 15994824.
RA Samols MA, Hu J, Skalsky RL, Renne R;
RT "Cloning and identification of a microRNA cluster within the
RT latency-associated region of Kaposi's sarcoma-associated herpesvirus";
RL J Virol. 79:9301-9305(2005).
XX
RN [3]
RX PUBMED; 16474131.
RA Cai X, Cullen BR;
RT "Transcriptional origin of Kaposi's sarcoma-associated herpesvirus
RT microRNAs";
RL J Virol. 80:2234-2242(2006).
XX
RN [4]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [5]
RX PUBMED; 19889781.
RA Umbach JL, Cullen BR;
RT "In-depth analysis of Kaposi's sarcoma-associated herpesvirus microRNA
RT expression provides insights into the mammalian microRNA-processing
RT machinery";
RL J Virol. 84:695-703(2010).
XX
RN [6]
RX PUBMED; 20566670.
RA Lin YT, Kincaid RP, Arasappan D, Dowd SE, Hunicke-Smith SP, Sullivan CS;
RT "Small RNA profiling reveals antisense transcription throughout the KSHV
RT genome and novel small RNAs";
RL RNA. 16:1540-1558(2010).
XX
CC Samols et al. incorrectly named this sequence miR-6 [2]. Cai et al.
CC define the likely miRNA primary transcripts in [3].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..30
FT /accession="MIMAT0015213"
FT /product="kshv-miR-K12-11-5p"
FT /evidence=experimental
FT /experiment="Illumina [5], SOLiD [6]"
FT miRNA 46..67
FT /accession="MIMAT0002181"
FT /product="kshv-miR-K12-11-3p"
FT /evidence=experimental
FT /experiment="cloned [1-2,4], Illumina [5], SOLiD [6]"
XX
SQ Sequence 71 BP; 13 A; 16 C; 18 G; 0 T; 24 other;
cgcuuugguc acagcuuaaa cauuucuagg gcgguguuau gauccuuaau gcuuagccug 60
uguccgaugc g 71
//
ID kshv-mir-K12-1 standard; RNA; VRL; 67 BP.
XX
AC MI0002475;
XX
DE Kaposi sarcoma-associated herpesvirus miR-K12-1 stem-loop
XX
RN [1]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [2]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [3]
RX PUBMED; 15994824.
RA Samols MA, Hu J, Skalsky RL, Renne R;
RT "Cloning and identification of a microRNA cluster within the
RT latency-associated region of Kaposi's sarcoma-associated herpesvirus";
RL J Virol. 79:9301-9305(2005).
XX
RN [4]
RX PUBMED; 16474131.
RA Cai X, Cullen BR;
RT "Transcriptional origin of Kaposi's sarcoma-associated herpesvirus
RT microRNAs";
RL J Virol. 80:2234-2242(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 19889781.
RA Umbach JL, Cullen BR;
RT "In-depth analysis of Kaposi's sarcoma-associated herpesvirus microRNA
RT expression provides insights into the mammalian microRNA-processing
RT machinery";
RL J Virol. 84:695-703(2010).
XX
RN [7]
RX PUBMED; 20566670.
RA Lin YT, Kincaid RP, Arasappan D, Dowd SE, Hunicke-Smith SP, Sullivan CS;
RT "Small RNA profiling reveals antisense transcription throughout the KSHV
RT genome and novel small RNAs";
RL RNA. 16:1540-1558(2010).
XX
CC Cai et al. define the likely miRNA primary transcripts in [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 3..25
FT /accession="MIMAT0002182"
FT /product="kshv-miR-K12-1-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3,5], Illumina [6], SOLiD [7]"
FT miRNA 41..62
FT /accession="MIMAT0015214"
FT /product="kshv-miR-K12-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [6], SOLiD [7]"
XX
SQ Sequence 67 BP; 16 A; 20 C; 15 G; 0 T; 16 other;
cgauuacagg aaacugggug uaagcuguac auaauccccg gcagcaccug uuuccugcaa 60
cccucgu 67
//
ID kshv-miR-K12-2 standard; RNA; VRL; 91 BP.
XX
AC MI0002476;
XX
DE Kaposi sarcoma-associated herpesvirus miR-K12-2 stem-loop
XX
RN [1]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [2]
RX PUBMED; 16474131.
RA Cai X, Cullen BR;
RT "Transcriptional origin of Kaposi's sarcoma-associated herpesvirus
RT microRNAs";
RL J Virol. 80:2234-2242(2006).
XX
RN [3]
RX PUBMED; 19889781.
RA Umbach JL, Cullen BR;
RT "In-depth analysis of Kaposi's sarcoma-associated herpesvirus microRNA
RT expression provides insights into the mammalian microRNA-processing
RT machinery";
RL J Virol. 84:695-703(2010).
XX
RN [4]
RX PUBMED; 20566670.
RA Lin YT, Kincaid RP, Arasappan D, Dowd SE, Hunicke-Smith SP, Sullivan CS;
RT "Small RNA profiling reveals antisense transcription throughout the KSHV
RT genome and novel small RNAs";
RL RNA. 16:1540-1558(2010).
XX
CC Cai et al. define the likely miRNA primary transcripts in [2].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002183"
FT /product="kshv-miR-K12-2-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3], SOLiD [4]"
FT miRNA 58..78
FT /accession="MIMAT0015215"
FT /product="kshv-miR-K12-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [3], SOLiD [4]"
XX
SQ Sequence 91 BP; 18 A; 26 C; 26 G; 0 T; 21 other;
gggucuacuu cgcuaacugu aguccggguc gaucugagcc auugaagcaa gcuuccagau 60
cuuccagggc uagagcugcc gcggugacac c 91
//
ID kshv-mir-K12-9 standard; RNA; VRL; 66 BP.
XX
AC MI0002477;
XX
DE Kaposi sarcoma-associated herpesvirus miR-K12-9 stem-loop
XX
RN [1]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [2]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [3]
RX PUBMED; 15994824.
RA Samols MA, Hu J, Skalsky RL, Renne R;
RT "Cloning and identification of a microRNA cluster within the
RT latency-associated region of Kaposi's sarcoma-associated herpesvirus";
RL J Virol. 79:9301-9305(2005).
XX
RN [4]
RX PUBMED; 16474131.
RA Cai X, Cullen BR;
RT "Transcriptional origin of Kaposi's sarcoma-associated herpesvirus
RT microRNAs";
RL J Virol. 80:2234-2242(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 20566670.
RA Lin YT, Kincaid RP, Arasappan D, Dowd SE, Hunicke-Smith SP, Sullivan CS;
RT "Small RNA profiling reveals antisense transcription throughout the KSHV
RT genome and novel small RNAs";
RL RNA. 16:1540-1558(2010).
XX
CC Cai et al. define the likely miRNA primary transcripts in [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0002184"
FT /product="kshv-miR-K12-9-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,5], SOLiD [6]"
FT miRNA 41..62
FT /accession="MIMAT0002185"
FT /product="kshv-miR-K12-9-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3,5], SOLiD [6]"
XX
SQ Sequence 66 BP; 16 A; 22 C; 17 G; 0 T; 11 other;
gggucuaccc agcugcguaa accccgcugc guaaacacag cuggguauac gcagcugcgu 60
aaaccc 66
//
ID kshv-mir-K12-8 standard; RNA; VRL; 70 BP.
XX
AC MI0002478;
XX
DE Kaposi sarcoma-associated herpesvirus miR-K12-8 stem-loop
XX
RN [1]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [2]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [3]
RX PUBMED; 15994824.
RA Samols MA, Hu J, Skalsky RL, Renne R;
RT "Cloning and identification of a microRNA cluster within the
RT latency-associated region of Kaposi's sarcoma-associated herpesvirus";
RL J Virol. 79:9301-9305(2005).
XX
RN [4]
RX PUBMED; 16474131.
RA Cai X, Cullen BR;
RT "Transcriptional origin of Kaposi's sarcoma-associated herpesvirus
RT microRNAs";
RL J Virol. 80:2234-2242(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 19889781.
RA Umbach JL, Cullen BR;
RT "In-depth analysis of Kaposi's sarcoma-associated herpesvirus microRNA
RT expression provides insights into the mammalian microRNA-processing
RT machinery";
RL J Virol. 84:695-703(2010).
XX
RN [7]
RX PUBMED; 20566670.
RA Lin YT, Kincaid RP, Arasappan D, Dowd SE, Hunicke-Smith SP, Sullivan CS;
RT "Small RNA profiling reveals antisense transcription throughout the KSHV
RT genome and novel small RNAs";
RL RNA. 16:1540-1558(2010).
XX
CC Cai et al. define the likely miRNA primary transcripts in [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0015216"
FT /product="kshv-miR-K12-8-5p"
FT /evidence=experimental
FT /experiment="Illumina [6], SOLiD [7]"
FT miRNA 46..66
FT /accession="MIMAT0002186"
FT /product="kshv-miR-K12-8-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3,5], Illumina [6], SOLiD [7]"
XX
SQ Sequence 70 BP; 13 A; 24 C; 20 G; 0 T; 13 other;
cgcgcacucc cucacuaacg ccccgcuuuu gucuguugga agcagcuagg cgcgacugag 60
agagcacgcg 70
//
ID kshv-mir-K12-7 standard; RNA; VRL; 72 BP.
XX
AC MI0002479;
XX
DE Kaposi sarcoma-associated herpesvirus miR-K12-7 stem-loop
XX
RN [1]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [2]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [3]
RX PUBMED; 15994824.
RA Samols MA, Hu J, Skalsky RL, Renne R;
RT "Cloning and identification of a microRNA cluster within the
RT latency-associated region of Kaposi's sarcoma-associated herpesvirus";
RL J Virol. 79:9301-9305(2005).
XX
RN [4]
RX PUBMED; 16474131.
RA Cai X, Cullen BR;
RT "Transcriptional origin of Kaposi's sarcoma-associated herpesvirus
RT microRNAs";
RL J Virol. 80:2234-2242(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 19889781.
RA Umbach JL, Cullen BR;
RT "In-depth analysis of Kaposi's sarcoma-associated herpesvirus microRNA
RT expression provides insights into the mammalian microRNA-processing
RT machinery";
RL J Virol. 84:695-703(2010).
XX
RN [7]
RX PUBMED; 20566670.
RA Lin YT, Kincaid RP, Arasappan D, Dowd SE, Hunicke-Smith SP, Sullivan CS;
RT "Small RNA profiling reveals antisense transcription throughout the KSHV
RT genome and novel small RNAs";
RL RNA. 16:1540-1558(2010).
XX
CC Cai et al. define the likely miRNA primary transcripts in [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..30
FT /accession="MIMAT0015217"
FT /product="kshv-miR-K12-7-5p"
FT /evidence=experimental
FT /experiment="Illumina [6], SOLiD [7]"
FT miRNA 47..66
FT /accession="MIMAT0002187"
FT /product="kshv-miR-K12-7-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3,5], Illumina [6], SOLiD [7]"
XX
SQ Sequence 72 BP; 12 A; 20 C; 21 G; 0 T; 19 other;
gcguugagcg ccaccggacg gggauuuaug cuguaucuua cuaccaugau cccauguugc 60
uggcgcucac gg 72
//
ID kshv-mir-K12-6 standard; RNA; VRL; 62 BP.
XX
AC MI0002480;
XX
DE Kaposi sarcoma-associated herpesvirus miR-K12-6 stem-loop
XX
RN [1]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [2]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [3]
RX PUBMED; 15994824.
RA Samols MA, Hu J, Skalsky RL, Renne R;
RT "Cloning and identification of a microRNA cluster within the
RT latency-associated region of Kaposi's sarcoma-associated herpesvirus";
RL J Virol. 79:9301-9305(2005).
XX
RN [4]
RX PUBMED; 16474131.
RA Cai X, Cullen BR;
RT "Transcriptional origin of Kaposi's sarcoma-associated herpesvirus
RT microRNAs";
RL J Virol. 80:2234-2242(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 19889781.
RA Umbach JL, Cullen BR;
RT "In-depth analysis of Kaposi's sarcoma-associated herpesvirus microRNA
RT expression provides insights into the mammalian microRNA-processing
RT machinery";
RL J Virol. 84:695-703(2010).
XX
RN [7]
RX PUBMED; 20566670.
RA Lin YT, Kincaid RP, Arasappan D, Dowd SE, Hunicke-Smith SP, Sullivan CS;
RT "Small RNA profiling reveals antisense transcription throughout the KSHV
RT genome and novel small RNAs";
RL RNA. 16:1540-1558(2010).
XX
CC Samols et al. incorrectly named this sequence miR-5 [3]. Cai et al.
CC define the likely miRNA primary transcripts in [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0002188"
FT /product="kshv-miR-K12-6-5p"
FT /evidence=experimental
FT /experiment="cloned [1-2,5], Illumina [6], SOLiD [7]"
FT miRNA 37..58
FT /accession="MIMAT0002189"
FT /product="kshv-miR-K12-6-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3,5], Illumina [6], SOLiD [7]"
XX
SQ Sequence 62 BP; 9 A; 16 C; 21 G; 0 T; 16 other;
cuuguccagc agcaccuaau ccaucggcgg ucgggcugau gguuuucggg cuguugagcg 60
ag 62
//
ID kshv-mir-K12-5 standard; RNA; VRL; 70 BP.
XX
AC MI0002481;
XX
DE Kaposi sarcoma-associated herpesvirus miR-K12-5 stem-loop
XX
RN [1]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [2]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [3]
RX PUBMED; 15994824.
RA Samols MA, Hu J, Skalsky RL, Renne R;
RT "Cloning and identification of a microRNA cluster within the
RT latency-associated region of Kaposi's sarcoma-associated herpesvirus";
RL J Virol. 79:9301-9305(2005).
XX
RN [4]
RX PUBMED; 16474131.
RA Cai X, Cullen BR;
RT "Transcriptional origin of Kaposi's sarcoma-associated herpesvirus
RT microRNAs";
RL J Virol. 80:2234-2242(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 19889781.
RA Umbach JL, Cullen BR;
RT "In-depth analysis of Kaposi's sarcoma-associated herpesvirus microRNA
RT expression provides insights into the mammalian microRNA-processing
RT machinery";
RL J Virol. 84:695-703(2010).
XX
RN [7]
RX PUBMED; 20566670.
RA Lin YT, Kincaid RP, Arasappan D, Dowd SE, Hunicke-Smith SP, Sullivan CS;
RT "Small RNA profiling reveals antisense transcription throughout the KSHV
RT genome and novel small RNAs";
RL RNA. 16:1540-1558(2010).
XX
CC Samols et al. incorrectly named this sequence miR-4 [3]. Cai et al.
CC define the likely miRNA primary transcripts in [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0015218"
FT /product="kshv-miR-K12-5-5p"
FT /evidence=experimental
FT /experiment="Illumina [6], SOLiD [7]"
FT miRNA 46..68
FT /accession="MIMAT0002190"
FT /product="kshv-miR-K12-5-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3,5], Illumina [6], SOLiD [7]"
XX
SQ Sequence 70 BP; 15 A; 19 C; 19 G; 0 T; 17 other;
ugaccuaggu agucccuggu gcccuaaggg ucuacaucaa gcacuuagga ugccuggaac 60
uugccgguca 70
//
ID kshv-mir-K12-4 standard; RNA; VRL; 70 BP.
XX
AC MI0002482;
XX
DE Kaposi sarcoma-associated herpesvirus miR-K12-4 stem-loop
XX
RN [1]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [2]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [3]
RX PUBMED; 15994824.
RA Samols MA, Hu J, Skalsky RL, Renne R;
RT "Cloning and identification of a microRNA cluster within the
RT latency-associated region of Kaposi's sarcoma-associated herpesvirus";
RL J Virol. 79:9301-9305(2005).
XX
RN [4]
RX PUBMED; 16474131.
RA Cai X, Cullen BR;
RT "Transcriptional origin of Kaposi's sarcoma-associated herpesvirus
RT microRNAs";
RL J Virol. 80:2234-2242(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 19889781.
RA Umbach JL, Cullen BR;
RT "In-depth analysis of Kaposi's sarcoma-associated herpesvirus microRNA
RT expression provides insights into the mammalian microRNA-processing
RT machinery";
RL J Virol. 84:695-703(2010).
XX
RN [7]
RX PUBMED; 20566670.
RA Lin YT, Kincaid RP, Arasappan D, Dowd SE, Hunicke-Smith SP, Sullivan CS;
RT "Small RNA profiling reveals antisense transcription throughout the KSHV
RT genome and novel small RNAs";
RL RNA. 16:1540-1558(2010).
XX
CC Samols et al. incorrectly named this sequence miR-3 [3]. Cai et al.
CC define the likely miRNA primary transcripts in [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..28
FT /accession="MIMAT0002191"
FT /product="kshv-miR-K12-4-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3,5], Illumina [6], SOLiD [7]"
FT miRNA 45..66
FT /accession="MIMAT0002192"
FT /product="kshv-miR-K12-4-3p"
FT /evidence=experimental
FT /experiment="cloned [1-3,5], Illumina [6], SOLiD [7]"
XX
SQ Sequence 70 BP; 22 A; 14 C; 13 G; 0 T; 21 other;
auaacuagcu aaaccgcagu acucuagggc auucauuugu uacauagaau acugaggccu 60
agcugauuau 70
//
ID kshv-mir-K12-3 standard; RNA; VRL; 70 BP.
XX
AC MI0002483;
XX
DE Kaposi sarcoma-associated herpesvirus miR-K12-3 stem-loop
XX
RN [1]
RX PUBMED; 15800047.
RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR;
RT "Kaposi's sarcoma-associated herpesvirus expresses an array of viral
RT microRNAs in latently infected cells";
RL Proc Natl Acad Sci U S A. 102:5570-5575(2005).
XX
RN [2]
RX PUBMED; 15782219.
RA Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA,
RA van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G,
RA Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T;
RT "Identification of microRNAs of the herpesvirus family";
RL Nat Methods. 2:269-276(2005).
XX
RN [3]
RX PUBMED; 15994824.
RA Samols MA, Hu J, Skalsky RL, Renne R;
RT "Cloning and identification of a microRNA cluster within the
RT latency-associated region of Kaposi's sarcoma-associated herpesvirus";
RL J Virol. 79:9301-9305(2005).
XX
RN [4]
RX PUBMED; 16474131.
RA Cai X, Cullen BR;
RT "Transcriptional origin of Kaposi's sarcoma-associated herpesvirus
RT microRNAs";
RL J Virol. 80:2234-2242(2006).
XX
RN [5]
RX PUBMED; 17604727.
RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
RA JJ, Sander C, Zavolan M, Tuschl T;
RT "A mammalian microRNA expression atlas based on small RNA library
RT sequencing";
RL Cell. 129:1401-1414(2007).
XX
RN [6]
RX PUBMED; 19889781.
RA Umbach JL, Cullen BR;
RT "In-depth analysis of Kaposi's sarcoma-associated herpesvirus microRNA
RT expression provides insights into the mammalian microRNA-processing
RT machinery";
RL J Virol. 84:695-703(2010).
XX
RN [7]
RX PUBMED; 20566670.
RA Lin YT, Kincaid RP, Arasappan D, Dowd SE, Hunicke-Smith SP, Sullivan CS;
RT "Small RNA profiling reveals antisense transcription throughout the KSHV
RT genome and novel small RNAs";
RL RNA. 16:1540-1558(2010).
XX
CC Samols et al. incorrectly named this sequence miR-2 [3]. Cai et al.
CC define the likely miRNA primary transcripts in [4].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0002193"
FT /product="kshv-miR-K12-3-5p"
FT /evidence=experimental
FT /experiment="cloned [1-3,5], Illumina [6], SOLiD [7]"
FT miRNA 48..68
FT /accession="MIMAT0002194"
FT /product="kshv-miR-K12-3-3p"
FT /evidence=experimental
FT /experiment="cloned [2,5], Illumina [6], SOLiD [7]"
XX
SQ Sequence 70 BP; 17 A; 19 C; 20 G; 0 T; 14 other;
ggcuaucaca uucugaggac ggcagcgacg ugugucuaac gucaacgucg cggucacaga 60
augugacacc 70
//
ID mml-mir-200c standard; RNA; MML; 68 BP.
XX
AC MI0002484;
XX
DE Macaca mulatta miR-200c stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315484; MIR200C.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0026560"
FT /product="mml-miR-200c-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 45..66
FT /accession="MIMAT0002195"
FT /product="mml-miR-200c-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000650"
XX
SQ Sequence 68 BP; 11 A; 15 C; 23 G; 0 T; 19 other;
cccucgucuu acccagcagu guuugggugc gguugggagu cucuaauacu gccggguaau 60
gauggagg 68
//
ID mml-mir-141 standard; RNA; MML; 95 BP.
XX
AC MI0002485;
XX
DE Macaca mulatta miR-141 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315119; MIR141.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..38
FT /accession="MIMAT0026561"
FT /product="mml-miR-141-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 60..80
FT /accession="MIMAT0002196"
FT /product="mml-miR-141-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000457"
XX
SQ Sequence 95 BP; 16 A; 24 C; 28 G; 0 T; 27 other;
uggccggccc uggguccauc uuccaguaca guguuggaug gucuaauugu gaagcuccua 60
acacugucug guaaagaugg cccccggguc gguuu 95
//
ID ggo-mir-200c standard; RNA; GGO; 67 BP.
XX
AC MI0002486;
XX
DE Gorilla gorilla miR-200c stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 44..65
FT /accession="MIMAT0002197"
FT /product="ggo-miR-200c"
FT /evidence=not_experimental
FT /similarity="MI0000650"
XX
SQ Sequence 67 BP; 11 A; 14 C; 23 G; 0 T; 19 other;
ccucgucuua cccagcagug uuugggugcg guugggaguc ucuaauacug ccggguaaug 60
auggagg 67
//
ID ggo-mir-141 standard; RNA; GGO; 95 BP.
XX
AC MI0002487;
XX
DE Gorilla gorilla miR-141 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 60..80
FT /accession="MIMAT0002198"
FT /product="ggo-miR-141"
FT /evidence=not_experimental
FT /similarity="MI0000457"
XX
SQ Sequence 95 BP; 16 A; 25 C; 29 G; 0 T; 25 other;
cggccggccc uggguccauc uuccaguaca guguuggaug gucuaauugu gaagcuccua 60
acacugucug guaaagaugg cccccgggug gguuc 95
//
ID ppy-mir-200c standard; RNA; PPY; 68 BP.
XX
AC MI0002488;
XX
DE Pongo pygmaeus miR-200c stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 45..66
FT /accession="MIMAT0002199"
FT /product="ppy-miR-200c"
FT /evidence=not_experimental
FT /similarity="MI0000650"
XX
SQ Sequence 68 BP; 11 A; 15 C; 23 G; 0 T; 19 other;
cccucgucuu acccagcagu guuugggugc gguugggagu cucuaauacu gccggguaau 60
gauggagg 68
//
ID ppy-mir-141 standard; RNA; PPY; 95 BP.
XX
AC MI0002489;
XX
DE Pongo pygmaeus miR-141 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 60..80
FT /accession="MIMAT0002200"
FT /product="ppy-miR-141"
FT /evidence=not_experimental
FT /similarity="MI0000457"
XX
SQ Sequence 95 BP; 16 A; 23 C; 29 G; 0 T; 27 other;
uggccggccc uggguucauc uuccaguaca guguuggaug gucuaauugu gaagcuccua 60
acacugucug guaaagaugg cccccgggug gguuc 95
//
ID ppa-mir-141 standard; RNA; PPA; 95 BP.
XX
AC MI0002490;
XX
DE Pan paniscus miR-141 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 60..80
FT /accession="MIMAT0002201"
FT /product="ppa-miR-141"
FT /evidence=not_experimental
FT /similarity="MI0000457"
XX
SQ Sequence 95 BP; 16 A; 24 C; 29 G; 0 T; 26 other;
uggccggccc uggguccauc uuccaguaca guguuggaug gucuaauugu gaagcuccua 60
acacugucug guaaagaugg cccccgggug gguuc 95
//
ID ggo-mir-15b standard; RNA; GGO; 98 BP.
XX
AC MI0002491;
XX
DE Gorilla gorilla miR-15b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0002202"
FT /product="ggo-miR-15b"
FT /evidence=not_experimental
FT /similarity="MI0000438"
XX
SQ Sequence 98 BP; 31 A; 17 C; 19 G; 0 T; 31 other;
uugaggccuu aaaguacugu agcagcacau caugguuuac augcuacagu caagaugcga 60
aucauuauuu gcugcucuag aaauuuaagg aaauucau 98
//
ID age-mir-15b standard; RNA; AGE; 98 BP.
XX
AC MI0002492;
XX
DE Ateles geoffroyi miR-15b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0002203"
FT /product="age-miR-15b"
FT /evidence=not_experimental
FT /similarity="MI0000438"
XX
SQ Sequence 98 BP; 32 A; 17 C; 18 G; 0 T; 31 other;
uugaggccuu aaaguacugu agcagcacau caugguuuac auacuacagu caagaugcga 60
aucauuauuu gcugcucuag aaauuuaagg aaauucau 98
//
ID ppa-mir-15b standard; RNA; PPA; 98 BP.
XX
AC MI0002493;
XX
DE Pan paniscus miR-15b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0002204"
FT /product="ppa-miR-15b"
FT /evidence=not_experimental
FT /similarity="MI0000438"
XX
SQ Sequence 98 BP; 31 A; 17 C; 19 G; 0 T; 31 other;
uugaggccuu aaaguacugu agcagcacau caugguuuac augcuacagu caagaugcga 60
aucauuauuu gcugcucuag aaauuuaagg aaauucau 98
//
ID ppy-mir-15b standard; RNA; PPY; 98 BP.
XX
AC MI0002494;
XX
DE Pongo pygmaeus miR-15b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0002205"
FT /product="ppy-miR-15b"
FT /evidence=not_experimental
FT /similarity="MI0000438"
XX
SQ Sequence 98 BP; 31 A; 17 C; 19 G; 0 T; 31 other;
uugaggccuu aaaguacugu agcagcacau caugguuuac augcuacagu caagaugcga 60
aucauuauuu gcugcucuag aaauuuaagg aaauucau 98
//
ID ptr-mir-15b standard; RNA; PTR; 98 BP.
XX
AC MI0002495;
XX
DE Pan troglodytes miR-15b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751870; MIR15B.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0002206"
FT /product="ptr-miR-15b"
FT /evidence=not_experimental
FT /similarity="MI0000438"
XX
SQ Sequence 98 BP; 31 A; 17 C; 19 G; 0 T; 31 other;
uugaggccuu aaaguacugu agcagcacau caugguuuac augcuacagu caagaugcga 60
aucauuauuu gcugcucuag aaauuuaagg aaauucau 98
//
ID mml-mir-15b standard; RNA; MML; 98 BP.
XX
AC MI0002496;
XX
DE Macaca mulatta miR-15b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315379; MIR15B.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0002207"
FT /product="mml-miR-15b-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000438"
FT miRNA 58..79
FT /accession="MIMAT0026562"
FT /product="mml-miR-15b-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 98 BP; 32 A; 17 C; 18 G; 0 T; 31 other;
uugaggccuu aaaguacugu agcagcacau caugguuuac auacuacagu caagaugcga 60
aucauuauuu gcugcucuag aaauuuaagg aaauucau 98
//
ID lla-mir-15b standard; RNA; LLA; 98 BP.
XX
AC MI0002497;
XX
DE Lagothrix lagotricha miR-15b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0002208"
FT /product="lla-miR-15b"
FT /evidence=not_experimental
FT /similarity="MI0000438"
XX
SQ Sequence 98 BP; 32 A; 17 C; 18 G; 0 T; 31 other;
uugaggccuu aaaguacugu agcagcacau caugguuuac auacuacagu caagaugcga 60
aucauuauuu gcugcucuag aaauuuaagg aaauucau 98
//
ID mne-mir-15b standard; RNA; MNE; 98 BP.
XX
AC MI0002498;
XX
DE Macaca nemestrina miR-15b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 20..41
FT /accession="MIMAT0002209"
FT /product="mne-miR-15b"
FT /evidence=not_experimental
FT /similarity="MI0000438"
XX
SQ Sequence 98 BP; 32 A; 17 C; 18 G; 0 T; 31 other;
uugaggccuu aaaguacugu agcagcacau caugguuuac auacuacagu caagaugcga 60
aucauuauuu gcugcucuag aaauuuaagg aaauucau 98
//
ID ptr-mir-23b standard; RNA; PTR; 97 BP.
XX
AC MI0002499;
XX
DE Pan troglodytes miR-23b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751871; MIR23B.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 58..80
FT /accession="MIMAT0002210"
FT /product="ptr-miR-23b"
FT /evidence=not_experimental
FT /similarity="MI0000439"
XX
SQ Sequence 97 BP; 21 A; 25 C; 24 G; 0 T; 27 other;
cucaggugcu cuggcugcuu ggguuccugg caugcugauu ugugacuuaa gauuaaaauc 60
acauugccag ggauuaccac gcaaccacga ccuuggc 97
//
ID ppy-mir-23b standard; RNA; PPY; 97 BP.
XX
AC MI0002500;
XX
DE Pongo pygmaeus miR-23b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 58..80
FT /accession="MIMAT0002211"
FT /product="ppy-miR-23b"
FT /evidence=not_experimental
FT /similarity="MI0000439"
XX
SQ Sequence 97 BP; 21 A; 25 C; 24 G; 0 T; 27 other;
cucaggugcu cuggcugcuu ggguuccugg caugcugauu ugugacuuaa gauuaaaauc 60
acauugccag ggauuaccac gcaaccacga ccuuggc 97
//
ID ppa-mir-23b standard; RNA; PPA; 97 BP.
XX
AC MI0002501;
XX
DE Pan paniscus miR-23b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 58..80
FT /accession="MIMAT0002212"
FT /product="ppa-miR-23b"
FT /evidence=not_experimental
FT /similarity="MI0000439"
XX
SQ Sequence 97 BP; 21 A; 25 C; 24 G; 0 T; 27 other;
cucaggugcu cuggcugcuu ggguuccugg caugcugauu ugugacuuaa gauuaaaauc 60
acauugccag ggauuaccac gcaaccacga ccuuggc 97
//
ID mml-mir-30b standard; RNA; MML; 88 BP.
XX
AC MI0002502;
XX
DE Macaca mulatta miR-30b stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315434; MIR30B.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0002213"
FT /product="mml-miR-30b-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000441"
FT miRNA 55..76
FT /accession="MIMAT0026563"
FT /product="mml-miR-30b-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 88 BP; 23 A; 17 C; 21 G; 0 T; 27 other;
accaaguuuc aguucaugua aacauccuac acucagcugu aauacaugga uuggcuggga 60
gguggauguu uacuucagcu gacuugga 88
//
ID ptr-mir-30b standard; RNA; PTR; 88 BP.
XX
AC MI0002503;
XX
DE Pan troglodytes miR-30b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751872; MIR30B.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0002214"
FT /product="ptr-miR-30b"
FT /evidence=not_experimental
FT /similarity="MI0000441"
XX
SQ Sequence 88 BP; 23 A; 17 C; 21 G; 0 T; 27 other;
accaaguuuc aguucaugua aacauccuac acucagcugu aauacaugga uuggcuggga 60
gguggauguu uacuucagcu gacuugga 88
//
ID ggo-mir-30b standard; RNA; GGO; 88 BP.
XX
AC MI0002504;
XX
DE Gorilla gorilla miR-30b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0002215"
FT /product="ggo-miR-30b"
FT /evidence=not_experimental
FT /similarity="MI0000441"
XX
SQ Sequence 88 BP; 23 A; 18 C; 21 G; 0 T; 26 other;
accaaguucc aguucaugua aacauccuac acucagcugu aauacaugga uuggcuggga 60
gguggauguu uacuucagcu gacuugga 88
//
ID lla-mir-30b standard; RNA; LLA; 88 BP.
XX
AC MI0002505;
XX
DE Lagothrix lagotricha miR-30b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0002216"
FT /product="lla-miR-30b"
FT /evidence=not_experimental
FT /similarity="MI0000441"
XX
SQ Sequence 88 BP; 23 A; 17 C; 21 G; 0 T; 27 other;
accgaguuuc aguucaugua aacauccuac acucagcugu aauacaugga uuggcugaga 60
gguggauguu uacuucagcu gacuugga 88
//
ID mne-mir-30b standard; RNA; MNE; 88 BP.
XX
AC MI0002506;
XX
DE Macaca nemestrina miR-30b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0002217"
FT /product="mne-miR-30b"
FT /evidence=not_experimental
FT /similarity="MI0000441"
XX
SQ Sequence 88 BP; 23 A; 17 C; 21 G; 0 T; 27 other;
accaaguuuc aguucaugua aacauccuac acucagcugu aauacaugga uuggcuggga 60
gguggauguu uacuucagcu gacuugga 88
//
ID age-mir-30b standard; RNA; AGE; 88 BP.
XX
AC MI0002507;
XX
DE Ateles geoffroyi miR-30b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0002218"
FT /product="age-miR-30b"
FT /evidence=not_experimental
FT /similarity="MI0000441"
XX
SQ Sequence 88 BP; 23 A; 17 C; 21 G; 0 T; 27 other;
accgaguuuc aguucaugua aacauccuac acucagcugu aauacaugga uuggcugaga 60
gguggauguu uacuucagcu gacuugga 88
//
ID ppa-mir-30b standard; RNA; PPA; 88 BP.
XX
AC MI0002508;
XX
DE Pan paniscus miR-30b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0002219"
FT /product="ppa-miR-30b"
FT /evidence=not_experimental
FT /similarity="MI0000441"
XX
SQ Sequence 88 BP; 23 A; 17 C; 21 G; 0 T; 27 other;
accaaguuuc aguucaugua aacauccuac acucagcugu aauacaugga uuggcuggga 60
gguggauguu uacuucagcu gacuugga 88
//
ID ggo-mir-125b-1 standard; RNA; GGO; 88 BP.
XX
AC MI0002509;
XX
DE Gorilla gorilla miR-125b-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002220"
FT /product="ggo-miR-125b"
FT /evidence=not_experimental
FT /similarity="MI0000446"
XX
SQ Sequence 88 BP; 14 A; 24 C; 23 G; 0 T; 27 other;
ugcgcuccuc ucagucccug agacccuaac uugugauguu uaccguuuaa auccacgggu 60
uaggcucuug ggagcugcga gucgugcu 88
//
ID age-mir-125b-1 standard; RNA; AGE; 88 BP.
XX
AC MI0002510;
XX
DE Ateles geoffroyi miR-125b-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002221"
FT /product="age-miR-125b"
FT /evidence=not_experimental
FT /similarity="MI0000446"
XX
SQ Sequence 88 BP; 14 A; 24 C; 23 G; 0 T; 27 other;
ugcgcuccuc ucagucccug agacccuaac uugugauguu uaccguuuaa auccacgggu 60
uaggcucuug ggagcugcga gucgugcu 88
//
ID ppa-mir-125b standard; RNA; PPA; 85 BP.
XX
AC MI0002511;
XX
DE Pan paniscus miR-125b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002222"
FT /product="ppa-miR-125b"
FT /evidence=not_experimental
FT /similarity="MI0000446"
XX
SQ Sequence 85 BP; 14 A; 23 C; 22 G; 0 T; 26 other;
ugcgcuccuc ucagucccug agacccuaac uugugauguu uaccguuuaa auccacgggu 60
uaggcucuug ggagcugcga gucgu 85
//
ID ppy-mir-125b-1 standard; RNA; PPY; 88 BP.
XX
AC MI0002512;
XX
DE Pongo pygmaeus miR-125b-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002223"
FT /product="ppy-miR-125b"
FT /evidence=not_experimental
FT /similarity="MI0000446"
XX
SQ Sequence 88 BP; 14 A; 24 C; 23 G; 0 T; 27 other;
ugcgcuccuc ucagucccug agacccuaac uugugauguu uaccguuuaa auccacgggu 60
uaggcucuug ggagcugcga gucgugcu 88
//
ID ptr-mir-125b-1 standard; RNA; PTR; 88 BP.
XX
AC MI0002513;
XX
DE Pan troglodytes miR-125b-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751873; MIR125B-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002224"
FT /product="ptr-miR-125b"
FT /evidence=not_experimental
FT /similarity="MI0000446"
XX
SQ Sequence 88 BP; 14 A; 24 C; 23 G; 0 T; 27 other;
ugcgcuccuc ucagucccug agacccuaac uugugauguu uaccguuuaa auccacgggu 60
uaggcucuug ggagcugcga gucgugcu 88
//
ID mml-mir-125b-1 standard; RNA; MML; 88 BP.
XX
AC MI0002514;
XX
DE Macaca mulatta miR-125b-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315120; MIR125B-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002225"
FT /product="mml-miR-125b-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000446"
FT miRNA 55..76
FT /accession="MIMAT0026564"
FT /product="mml-miR-125b-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 88 BP; 14 A; 24 C; 23 G; 0 T; 27 other;
ugcgcuccuc ucagucccug agacccuaac uugugauguu uaccguuuaa auccacgggu 60
uaggcucuug ggagcugcga gucgugcu 88
//
ID sla-mir-125b standard; RNA; SLA; 88 BP.
XX
AC MI0002515;
XX
DE Saguinus labiatus miR-125b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002226"
FT /product="sla-miR-125b"
FT /evidence=not_experimental
FT /similarity="MI0000446"
XX
SQ Sequence 88 BP; 14 A; 24 C; 23 G; 0 T; 27 other;
ugcgcuccuc ucagucccug agacccuaac uugugauguu uaccguuuaa auccacgggu 60
uaggcucuug ggagcugcga gucgugcu 88
//
ID lla-mir-125b-1 standard; RNA; LLA; 88 BP.
XX
AC MI0002516;
XX
DE Lagothrix lagotricha miR-125b-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002227"
FT /product="lla-miR-125b"
FT /evidence=not_experimental
FT /similarity="MI0000446"
XX
SQ Sequence 88 BP; 14 A; 24 C; 23 G; 0 T; 27 other;
ugcgcuccuc ucagucccug agacccuaac uugugauguu uaccguuuaa auccacgggu 60
uaggcucuug ggagcugcga gucgugcu 88
//
ID mne-mir-125b-1 standard; RNA; MNE; 88 BP.
XX
AC MI0002517;
XX
DE Macaca nemestrina miR-125b-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002228"
FT /product="mne-miR-125b"
FT /evidence=not_experimental
FT /similarity="MI0000446"
XX
SQ Sequence 88 BP; 14 A; 24 C; 23 G; 0 T; 27 other;
ugcgcuccuc ucagucccug agacccuaac uugugauguu uaccguuuaa auccacgggu 60
uaggcucuug ggagcugcga gucgugcu 88
//
ID mml-mir-128a standard; RNA; MML; 82 BP.
XX
AC MI0002518;
XX
DE Macaca mulatta miR-128a stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315121; MIR128A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0026565"
FT /product="mml-miR-128a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 50..71
FT /accession="MIMAT0002229"
FT /product="mml-miR-128a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000447"
XX
SQ Sequence 82 BP; 13 A; 19 C; 22 G; 0 T; 28 other;
ugagcuguug gauucggggc cguagcacug ucugagaggu uuacauuucu cacagugaac 60
cggucucuuu uucagcugcu uc 82
//
ID ptr-mir-128-1 standard; RNA; PTR; 82 BP.
XX
AC MI0002519;
XX
DE Pan troglodytes miR-128-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751874; MIR128-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..70
FT /accession="MIMAT0002230"
FT /product="ptr-miR-128"
FT /evidence=not_experimental
FT /similarity="MI0000447"
XX
SQ Sequence 82 BP; 13 A; 19 C; 22 G; 0 T; 28 other;
ugagcuguug gauucggggc cguagcacug ucugagaggu uuacauuucu cacagugaac 60
cggucucuuu uucagcugcu uc 82
//
ID ppy-mir-128-1 standard; RNA; PPY; 82 BP.
XX
AC MI0002520;
XX
DE Pongo pygmaeus miR-128 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..70
FT /accession="MIMAT0002231"
FT /product="ppy-miR-128"
FT /evidence=not_experimental
FT /similarity="MI0000447"
XX
SQ Sequence 82 BP; 13 A; 19 C; 22 G; 0 T; 28 other;
ugagcuguug gauucggggc cguagcacug ucugagaggu uuacauuucu cacagugaac 60
cggucucuuu uucagcugcu uc 82
//
ID sla-mir-128 standard; RNA; SLA; 82 BP.
XX
AC MI0002521;
XX
DE Saguinus labiatus miR-128 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..71
FT /accession="MIMAT0002232"
FT /product="sla-miR-128"
FT /evidence=not_experimental
FT /similarity="MI0000447"
XX
SQ Sequence 82 BP; 13 A; 19 C; 22 G; 0 T; 28 other;
ugagcuguug gauucggggc cguagcacug ucugagaggu uuacauuucu cacagugaac 60
cggucucuuu uucagcugcu uc 82
//
ID age-mir-128 standard; RNA; AGE; 82 BP.
XX
AC MI0002522;
XX
DE Ateles geoffroyi miR-128 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..71
FT /accession="MIMAT0002233"
FT /product="age-miR-128"
FT /evidence=not_experimental
FT /similarity="MI0000447"
XX
SQ Sequence 82 BP; 13 A; 19 C; 22 G; 0 T; 28 other;
ugagcuguug gauucggggc cguagcacug ucugagaggu uuacauuucu cacagugaac 60
cggucucuuu uucagcugcu uc 82
//
ID ppa-mir-128 standard; RNA; PPA; 82 BP.
XX
AC MI0002523;
XX
DE Pan paniscus miR-128 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..71
FT /accession="MIMAT0002234"
FT /product="ppa-miR-128"
FT /evidence=not_experimental
FT /similarity="MI0000447"
XX
SQ Sequence 82 BP; 13 A; 19 C; 22 G; 0 T; 28 other;
ugagcuguug gauucggggc cguagcacug ucugagaggu uuacauuucu cacagugaac 60
cggucucuuu uucagcugcu uc 82
//
ID mml-mir-130a standard; RNA; MML; 81 BP.
XX
AC MI0002524;
XX
DE Macaca mulatta miR-130a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315485; MIR130A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0026566"
FT /product="mml-miR-130a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 55..74
FT /accession="MIMAT0002235"
FT /product="mml-miR-130a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000448"
XX
SQ Sequence 81 BP; 16 A; 21 C; 20 G; 0 T; 24 other;
ugcugcuggc cagagcucuu uucacauugu gcuacugucu gcaccuguca cuagcagugc 60
aauguuaaaa gggcauuggc c 81
//
ID ggo-mir-130a standard; RNA; GGO; 89 BP.
XX
AC MI0002525;
XX
DE Gorilla gorilla miR-130a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 55..74
FT /accession="MIMAT0002236"
FT /product="ggo-miR-130a"
FT /evidence=not_experimental
FT /similarity="MI0000448"
XX
SQ Sequence 89 BP; 17 A; 21 C; 24 G; 0 T; 27 other;
ugcugcuggc cagagcucuu uucacauugu gcuacugucu gcaccuguca cuagcagugc 60
aauguuaaaa gggcauuggc cguguagug 89
//
ID mne-mir-130a standard; RNA; MNE; 89 BP.
XX
AC MI0002526;
XX
DE Macaca nemestrina miR-130a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 55..74
FT /accession="MIMAT0002237"
FT /product="mne-miR-130a"
FT /evidence=not_experimental
FT /similarity="MI0000448"
XX
SQ Sequence 89 BP; 17 A; 21 C; 24 G; 0 T; 27 other;
ugcugcuggc cagagcucuu uucacauugu gcuacugucu gcaccuguca cuagcagugc 60
aauguuaaaa gggcauuggc cguguagug 89
//
ID ppa-mir-130a standard; RNA; PPA; 89 BP.
XX
AC MI0002527;
XX
DE Pan paniscus miR-130a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 55..74
FT /accession="MIMAT0002238"
FT /product="ppa-miR-130a"
FT /evidence=not_experimental
FT /similarity="MI0000448"
XX
SQ Sequence 89 BP; 17 A; 21 C; 24 G; 0 T; 27 other;
ugcugcuggc cagagcucuu uucacauugu gcuacugucu gcaccuguca cuagcagugc 60
aauguuaaaa gggcauuggc cguguagug 89
//
ID ggo-mir-133a standard; RNA; GGO; 88 BP.
XX
AC MI0002528;
XX
DE Gorilla gorilla miR-133a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..75
FT /accession="MIMAT0002239"
FT /product="ggo-miR-133a"
FT /evidence=not_experimental
FT /similarity="MI0000450"
XX
SQ Sequence 88 BP; 24 A; 21 C; 18 G; 0 T; 25 other;
acaaugcuuu gcuagagcug guaaaaugga accaaaucgc cucuucaaug gauuuggucc 60
ccuucaacca gcuguagcua ugcauuga 88
//
ID age-mir-133a standard; RNA; AGE; 88 BP.
XX
AC MI0002529;
XX
DE Ateles geoffroyi miR-133a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..75
FT /accession="MIMAT0002240"
FT /product="age-miR-133a"
FT /evidence=not_experimental
FT /similarity="MI0000450"
XX
SQ Sequence 88 BP; 24 A; 21 C; 18 G; 0 T; 25 other;
acaaugcuuu gcuagagcug guaaaaugga accaaaucgc cucuucaaug gauuuggucc 60
ccuucaacca gcuguagcua ugcauuga 88
//
ID ppa-mir-133a standard; RNA; PPA; 88 BP.
XX
AC MI0002530;
XX
DE Pan paniscus miR-133a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..75
FT /accession="MIMAT0002241"
FT /product="ppa-miR-133a"
FT /evidence=not_experimental
FT /similarity="MI0000450"
XX
SQ Sequence 88 BP; 24 A; 21 C; 18 G; 0 T; 25 other;
acaaugcuuu gcuagagcug guaaaaugga accaaaucgc cucuucaaug gauuuggucc 60
ccuucaacca gcuguagcua ugcauuga 88
//
ID ppy-mir-133a standard; RNA; PPY; 88 BP.
XX
AC MI0002531;
XX
DE Pongo pygmaeus miR-133a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..74
FT /accession="MIMAT0002242"
FT /product="ppy-miR-133a"
FT /evidence=not_experimental
FT /similarity="MI0000450"
XX
SQ Sequence 88 BP; 24 A; 21 C; 18 G; 0 T; 25 other;
acaaugcuuu gcuagagcug guaaaaugga accaaaucgc cucuucaaug gauuuggucc 60
ccuucaacca gcuguagcua ugcauuga 88
//
ID ptr-mir-133a-1 standard; RNA; PTR; 88 BP.
XX
AC MI0002532;
XX
DE Pan troglodytes miR-133a-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751875; MIR133A-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0002243"
FT /product="ptr-miR-133a"
FT /evidence=not_experimental
FT /similarity="MI0000450"
XX
SQ Sequence 88 BP; 24 A; 21 C; 18 G; 0 T; 25 other;
acaaugcuuu gcuagagcug guaaaaugga accaaaucgc cucuucaaug gauuuggucc 60
ccuucaacca gcuguagcua ugcauuga 88
//
ID mml-mir-133a standard; RNA; MML; 88 BP.
XX
AC MI0002533;
XX
DE Macaca mulatta miR-133a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315122; MIR133A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..74
FT /accession="MIMAT0002244"
FT /product="mml-miR-133a"
FT /evidence=not_experimental
FT /similarity="MI0000450"
XX
SQ Sequence 88 BP; 24 A; 21 C; 18 G; 0 T; 25 other;
acaaugcuuu gcuagagcug guaaaaugga accaaaucgc cucuucaaug gauuuggucc 60
ccuucaacca gcuguagcua ugcauuga 88
//
ID sla-mir-133a standard; RNA; SLA; 88 BP.
XX
AC MI0002534;
XX
DE Saguinus labiatus miR-133a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..75
FT /accession="MIMAT0002245"
FT /product="sla-miR-133a"
FT /evidence=not_experimental
FT /similarity="MI0000450"
XX
SQ Sequence 88 BP; 24 A; 21 C; 18 G; 0 T; 25 other;
acaaugcuuu gcuagagcug guaaaaugga accaaaucgc cucuucaaug gauuuggucc 60
ccuucaacca gcuguagcua ugcauuga 88
//
ID lla-mir-133a standard; RNA; LLA; 88 BP.
XX
AC MI0002535;
XX
DE Lagothrix lagotricha miR-133a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..75
FT /accession="MIMAT0002246"
FT /product="lla-miR-133a"
FT /evidence=not_experimental
FT /similarity="MI0000450"
XX
SQ Sequence 88 BP; 24 A; 21 C; 18 G; 0 T; 25 other;
acaaugcuuu gcuagagcug guaaaaugga accaaaucgc cucuucaaug gauuuggucc 60
ccuucaacca gcuguagcua ugcauuga 88
//
ID mne-mir-133a standard; RNA; MNE; 88 BP.
XX
AC MI0002536;
XX
DE Macaca nemestrina miR-133a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..75
FT /accession="MIMAT0002247"
FT /product="mne-miR-133a"
FT /evidence=not_experimental
FT /similarity="MI0000450"
XX
SQ Sequence 88 BP; 24 A; 21 C; 18 G; 0 T; 25 other;
acaaugcuuu gcuagagcug guaaaaugga accaaaucgc cucuucaaug gauuuggucc 60
ccuucaacca gcuguagcua ugcauuga 88
//
ID lla-mir-135-1 standard; RNA; LLA; 90 BP.
XX
AC MI0002537;
XX
DE Lagothrix lagotricha miR-135-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0002248"
FT /product="lla-miR-135"
FT /evidence=not_experimental
FT /similarity="MI0000452"
XX
SQ Sequence 90 BP; 15 A; 22 C; 25 G; 0 T; 28 other;
aggccucgcu guucucuaug gcuuuuuauu ccuaugugau ucuacugcuc acucauauag 60
ggauuggagc cguggcgcac ggcggggaca 90
//
ID age-mir-135-1 standard; RNA; AGE; 90 BP.
XX
AC MI0002538;
XX
DE Ateles geoffroyi miR-135-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0002249"
FT /product="age-miR-135"
FT /evidence=not_experimental
FT /similarity="MI0000452"
XX
SQ Sequence 90 BP; 15 A; 22 C; 25 G; 0 T; 28 other;
aggccucgcu guucucuaug gcuuuuuauu ccuaugugau ucuacugcuc acucauauag 60
ggauuggagc cguggcgcac ggcggggaca 90
//
ID ppa-mir-135-1 standard; RNA; PPA; 90 BP.
XX
AC MI0002539;
XX
DE Pan paniscus miR-135-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..39
FT /accession="MIMAT0002250"
FT /product="ppa-miR-135"
FT /evidence=not_experimental
FT /similarity="MI0000452"
XX
SQ Sequence 90 BP; 14 A; 22 C; 26 G; 0 T; 28 other;
aggccucgcu guucucuaug gcuuuuuauu ccuaugugau ucuacugcuc acucauauag 60
ggauuggagc cguggcgcac ggcggggacg 90
//
ID mml-mir-135a-2 standard; RNA; MML; 100 BP.
XX
AC MI0002540;
XX
DE Macaca mulatta miR-135a-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315574; MIR135A-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0002251"
FT /product="mml-miR-135a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000453"
FT miRNA 61..82
FT /accession="MIMAT0026567"
FT /product="mml-miR-135a-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 100 BP; 34 A; 13 C; 19 G; 0 T; 34 other;
agauaaauuc acucuagugc uuuauggcuu uuuauuccua ugugauagua auaaagucuc 60
auguagggau ggaagccaug aaauacauug ugaaaaauca 100
//
ID ptr-mir-135a-2 standard; RNA; PTR; 100 BP.
XX
AC MI0002541;
XX
DE Pan troglodytes miR-135a-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751876; MIR135A-2.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0002252"
FT /product="ptr-miR-135a"
FT /evidence=not_experimental
FT /similarity="MI0000453"
XX
SQ Sequence 100 BP; 34 A; 13 C; 19 G; 0 T; 34 other;
agauaaauuc acucuagugc uuuauggcuu uuuauuccua ugugauagua auaaagucuc 60
auguagggau ggaagccaug aaauacauug ugaaaaauca 100
//
ID ggo-mir-135a standard; RNA; GGO; 100 BP.
XX
AC MI0002542;
XX
DE Gorilla gorilla miR-135 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0002253"
FT /product="ggo-miR-135a"
FT /evidence=not_experimental
FT /similarity="MI0000453"
XX
SQ Sequence 100 BP; 34 A; 13 C; 19 G; 0 T; 34 other;
agauaaauuc acucuagugc uuuauggcuu uuuauuccua ugugauagua auaaagucuc 60
auguagggau ggaagccaug aaauacauug ugaaaaauca 100
//
ID ppy-mir-135a-2 standard; RNA; PPY; 100 BP.
XX
AC MI0002543;
XX
DE Pongo pygmaeus miR-135a-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0015757"
FT /product="ppy-miR-135a"
FT /evidence=not_experimental
FT /similarity="MI0000453"
XX
SQ Sequence 100 BP; 34 A; 13 C; 19 G; 0 T; 34 other;
agauaaauuc acucuagugc uuuauggcuu uuuauuccua ugugauagua auaaagucuc 60
auguagggau ggaagccaug aaauacauug ugaaaaauca 100
//
ID lla-mir-135-2 standard; RNA; LLA; 100 BP.
XX
AC MI0002544;
XX
DE Lagothrix lagotricha miR-135-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0002248"
FT /product="lla-miR-135"
FT /evidence=not_experimental
FT /similarity="MI0000453"
XX
SQ Sequence 100 BP; 33 A; 16 C; 18 G; 0 T; 33 other;
agauaaauuc acucuagugc uuuauggcuu uuuauuccua ugugauagua auaaagucuc 60
auguagggau ggaagccaug caccacauaa uguaaaauca 100
//
ID age-mir-135-2 standard; RNA; AGE; 100 BP.
XX
AC MI0002545;
XX
DE Ateles geoffroyi miR-135-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0002249"
FT /product="age-miR-135"
FT /evidence=not_experimental
FT /similarity="MI0000453"
XX
SQ Sequence 100 BP; 34 A; 13 C; 19 G; 0 T; 34 other;
agauaaauuc acucuagugc uuuauggcuu uuuauuccua ugugauagua auaaagucuc 60
auguagggau ggaagccaug aaauacauug ugaaaaauca 100
//
ID ppa-mir-135-2 standard; RNA; PPA; 100 BP.
XX
AC MI0002546;
XX
DE Pan paniscus miR-135-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 23..45
FT /accession="MIMAT0002250"
FT /product="ppa-miR-135"
FT /evidence=not_experimental
FT /similarity="MI0000453"
XX
SQ Sequence 100 BP; 34 A; 13 C; 19 G; 0 T; 34 other;
agauaaauuc acucuagugc uuuauggcuu uuuauuccua ugugauagua auaaagucuc 60
auguagggau ggaagccaug aaauacauug ugaaaaauca 100
//
ID ptr-mir-140 standard; RNA; PTR; 100 BP.
XX
AC MI0002547;
XX
DE Pan troglodytes miR-140 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751877; MIR140.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0002255"
FT /product="ptr-miR-140"
FT /evidence=not_experimental
FT /similarity="MI0000456"
XX
SQ Sequence 100 BP; 18 A; 27 C; 27 G; 0 T; 28 other;
ugugucucuc ucuguguccu gccagugguu uuacccuaug guagguuacg ucaugcuguu 60
cuaccacagg guagaaccac ggacaggaua ccggggcacc 100
//
ID mne-mir-140 standard; RNA; MNE; 100 BP.
XX
AC MI0002548;
XX
DE Macaca nemestrina miR-140 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0002256"
FT /product="mne-miR-140"
FT /evidence=not_experimental
FT /similarity="MI0000456"
XX
SQ Sequence 100 BP; 18 A; 28 C; 27 G; 0 T; 27 other;
ugugucucuc ucuguguccu gccagugguu cuacccuaug guagguuacg ucaugcuguu 60
cuaccacagg guagaaccac ggacaggaua ccggggcacc 100
//
ID ptr-mir-143 standard; RNA; PTR; 106 BP.
XX
AC MI0002549;
XX
DE Pan troglodytes miR-143 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751878; MIR143.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..82
FT /accession="MIMAT0002257"
FT /product="ptr-miR-143"
FT /evidence=not_experimental
FT /similarity="MI0000459"
XX
SQ Sequence 106 BP; 21 A; 26 C; 34 G; 0 T; 25 other;
gcgcagcgcc cugucuccca gccugaggug cagugcugca ucucugguca guugggaguc 60
ugagaugaag cacuguagcu caggaagaga gaaguuuuuc ugcagc 106
//
ID ggo-mir-143 standard; RNA; GGO; 106 BP.
XX
AC MI0002550;
XX
DE Gorilla gorilla miR-143 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..82
FT /accession="MIMAT0002258"
FT /product="ggo-miR-143"
FT /evidence=not_experimental
FT /similarity="MI0000459"
XX
SQ Sequence 106 BP; 21 A; 26 C; 35 G; 0 T; 24 other;
gcgcagcgcc cugucuccca gccugaggug cagugcugca ucucugguca guugggaguc 60
ugagaugaag cacuguagcu caggaagaga gaaguuguuc ugcagc 106
//
ID ppy-mir-143 standard; RNA; PPY; 106 BP.
XX
AC MI0002551;
XX
DE Pongo pygmaeus miR-143 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..82
FT /accession="MIMAT0002259"
FT /product="ppy-miR-143"
FT /evidence=not_experimental
FT /similarity="MI0000459"
XX
SQ Sequence 106 BP; 21 A; 26 C; 35 G; 0 T; 24 other;
gcgcagcgcc cugucuccca gccugaggug cagugcugca ucucugguca guugggaguc 60
ugagaugaag cacuguagcu caggaagaga gaaguuguuc ugcagc 106
//
ID lla-mir-143 standard; RNA; LLA; 106 BP.
XX
AC MI0002552;
XX
DE Lagothrix lagotricha miR-143 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..82
FT /accession="MIMAT0002260"
FT /product="lla-miR-143"
FT /evidence=not_experimental
FT /similarity="MI0000459"
XX
SQ Sequence 106 BP; 21 A; 26 C; 35 G; 0 T; 24 other;
gcgcagcgcc cugucuccca gccugaggug cagugcugca ucucugguca guugggaguc 60
ugagaugaag cacuguagcu caggaagaga gaaguuguuc ugcagc 106
//
ID ppa-mir-143 standard; RNA; PPA; 106 BP.
XX
AC MI0002553;
XX
DE Pan paniscus miR-143 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..82
FT /accession="MIMAT0002261"
FT /product="ppa-miR-143"
FT /evidence=not_experimental
FT /similarity="MI0000459"
XX
SQ Sequence 106 BP; 21 A; 26 C; 34 G; 0 T; 25 other;
gcgcagcgcc cugucuccca gccugaggug cagugcugca ucucugguca guugggaguc 60
ugagaugaag cacuguagcu caggaagaga gaaguuuuuc ugcagc 106
//
ID ptr-mir-144 standard; RNA; PTR; 86 BP.
XX
AC MI0002554;
XX
DE Pan troglodytes miR-144 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751879; MIR144.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..73
FT /accession="MIMAT0002262"
FT /product="ptr-miR-144"
FT /evidence=not_experimental
FT /similarity="MI0000460"
XX
SQ Sequence 86 BP; 21 A; 19 C; 23 G; 0 T; 23 other;
uggggcccug gcugggauau caucauauac uguaaguuug cgaugagaca cuacaguaua 60
gaugauguac uaguccgggc acccuc 86
//
ID ppy-mir-144 standard; RNA; PPY; 86 BP.
XX
AC MI0002555;
XX
DE Pongo pygmaeus miR-144 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..73
FT /accession="MIMAT0002263"
FT /product="ppy-miR-144"
FT /evidence=not_experimental
FT /similarity="MI0000460"
XX
SQ Sequence 86 BP; 21 A; 19 C; 23 G; 0 T; 23 other;
uggggcccug gcugggauau caucauauac uguaaguuug cgaugagaca cuacaguaua 60
gaugauguac uagucugggc accccc 86
//
ID mne-mir-144 standard; RNA; MNE; 86 BP.
XX
AC MI0002556;
XX
DE Macaca nemestrina miR-144 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..73
FT /accession="MIMAT0002264"
FT /product="mne-miR-144"
FT /evidence=not_experimental
FT /similarity="MI0000460"
XX
SQ Sequence 86 BP; 21 A; 19 C; 23 G; 0 T; 23 other;
uggggcccug gcugggauau caucauauac uguaaguuug ugaugagaca cuacaguaua 60
gaugauguac uaguccgggc accccc 86
//
ID ppa-mir-144 standard; RNA; PPA; 86 BP.
XX
AC MI0002557;
XX
DE Pan paniscus miR-144 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..73
FT /accession="MIMAT0002265"
FT /product="ppa-miR-144"
FT /evidence=not_experimental
FT /similarity="MI0000460"
XX
SQ Sequence 86 BP; 21 A; 19 C; 23 G; 0 T; 23 other;
uggggcccug gcugggauau caucauauac uguaaguuug cgaugagaca cuacaguaua 60
gaugauguac uaguccgggc acccuc 86
//
ID mml-mir-145 standard; RNA; MML; 88 BP.
XX
AC MI0002558;
XX
DE Macaca mulatta miR-145 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315123; MIR145.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0002266"
FT /product="mml-miR-145-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000461"
FT miRNA 54..76
FT /accession="MIMAT0026568"
FT /product="mml-miR-145-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 88 BP; 19 A; 21 C; 20 G; 0 T; 28 other;
caccuugucc ucacggucca guuuucccag gaaucccuua aaugcuaaga uggggauucc 60
uggaaauacu guucuugagg ucaugguu 88
//
ID ptr-mir-145 standard; RNA; PTR; 88 BP.
XX
AC MI0002559;
XX
DE Pan troglodytes miR-145 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751880; MIR145.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0002267"
FT /product="ptr-miR-145"
FT /evidence=not_experimental
FT /similarity="MI0000461"
XX
SQ Sequence 88 BP; 18 A; 21 C; 21 G; 0 T; 28 other;
caccuugucc ucacggucca guuuucccag gaaucccuua gaugcuaaga uggggauucc 60
uggaaauacu guucuugagg ucaugguu 88
//
ID ggo-mir-145 standard; RNA; GGO; 88 BP.
XX
AC MI0002560;
XX
DE Gorilla gorilla miR-145 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0002268"
FT /product="ggo-miR-145"
FT /evidence=not_experimental
FT /similarity="MI0000461"
XX
SQ Sequence 88 BP; 18 A; 21 C; 21 G; 0 T; 28 other;
caccuugucc ucacggucca guuuucccag gaaucccuua gaugcuaaga uggggauucc 60
uggaaauacu guucuugagg ucaugguu 88
//
ID ppy-mir-145 standard; RNA; PPY; 88 BP.
XX
AC MI0002561;
XX
DE Pongo pygmaeus miR-145 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0002269"
FT /product="ppy-miR-145"
FT /evidence=not_experimental
FT /similarity="MI0000461"
XX
SQ Sequence 88 BP; 18 A; 21 C; 21 G; 0 T; 28 other;
caccuugucc ucacggucca guuuucccag gaaucccuua gaugcuaaga uggggauucc 60
uggaaauacu guucuugagg ucaugguu 88
//
ID mne-mir-145 standard; RNA; MNE; 88 BP.
XX
AC MI0002562;
XX
DE Macaca nemestrina miR-145 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..39
FT /accession="MIMAT0002270"
FT /product="mne-miR-145"
FT /evidence=not_experimental
FT /similarity="MI0000461"
XX
SQ Sequence 88 BP; 19 A; 21 C; 20 G; 0 T; 28 other;
caccuugucc ucacggucca guuuucccag gaaucccuua aaugcuaaga uggggauucc 60
uggaaauacu guucuugagg ucaugguu 88
//
ID mml-mir-153-1 standard; RNA; MML; 90 BP.
XX
AC MI0002563;
XX
DE Macaca mulatta miR-153-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315124; MIR153-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..37
FT /accession="MIMAT0026569"
FT /product="mml-miR-153-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 54..73
FT /accession="MIMAT0002271"
FT /product="mml-miR-153-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000463"
XX
SQ Sequence 90 BP; 20 A; 21 C; 21 G; 0 T; 28 other;
cucacagcug ccagugucau uuuugugauc ugcagcuagu auucucacuc caguugcaua 60
gucacaaaag ugaucauugg cagguguggc 90
//
ID ppy-mir-153-1 standard; RNA; PPY; 90 BP.
XX
AC MI0002564;
XX
DE Pongo pygmaeus miR-153 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..75
FT /accession="MIMAT0002272"
FT /product="ppy-miR-153"
FT /evidence=not_experimental
FT /similarity="MI0000463"
XX
SQ Sequence 90 BP; 20 A; 21 C; 21 G; 0 T; 28 other;
cucacagcug ccagugucau uuuugugauc ugcagcuagu auucucacuc caguugcaua 60
gucacaaaag ugaucauugg cagguguggc 90
//
ID mne-mir-153-1 standard; RNA; MNE; 90 BP.
XX
AC MI0002565;
XX
DE Macaca nemestrina miR-153-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..73
FT /accession="MIMAT0002273"
FT /product="mne-miR-153"
FT /evidence=not_experimental
FT /similarity="MI0000463"
XX
SQ Sequence 90 BP; 20 A; 21 C; 21 G; 0 T; 28 other;
cucacagcug ccagugucau uuuugugauc ugcagcuagu auucucacuc caguugcaua 60
gucacaaaag ugaucauugg cagguguggc 90
//
ID mml-mir-153-2 standard; RNA; MML; 87 BP.
XX
AC MI0002566;
XX
DE Macaca mulatta miR-153-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315435; MIR153-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0031060"
FT /product="mml-miR-153-2-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 53..72
FT /accession="MIMAT0002271"
FT /product="mml-miR-153-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000464"
XX
SQ Sequence 87 BP; 23 A; 14 C; 24 G; 0 T; 26 other;
agcgguggcc agugucauuu uugugauguu gcagcuagua auaugagccc aguugcauag 60
ucacaaaagu gaucauugga aacugug 87
//
ID ggo-mir-153 standard; RNA; GGO; 87 BP.
XX
AC MI0002567;
XX
DE Gorilla gorilla miR-153 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..72
FT /accession="MIMAT0002274"
FT /product="ggo-miR-153"
FT /evidence=not_experimental
FT /similarity="MI0000464"
XX
SQ Sequence 87 BP; 23 A; 14 C; 24 G; 0 T; 26 other;
agcgguggcc agugucauuu uugugauguu gcagcuagua auaugagccc aguugcauag 60
ucacaaaagu gaucauugga aacugug 87
//
ID mne-mir-153-2 standard; RNA; MNE; 87 BP.
XX
AC MI0002568;
XX
DE Macaca nemestrina miR-153-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..72
FT /accession="MIMAT0002273"
FT /product="mne-miR-153"
FT /evidence=not_experimental
FT /similarity="MI0000464"
XX
SQ Sequence 87 BP; 23 A; 14 C; 24 G; 0 T; 26 other;
agcgguggcc agugucauuu uugugauguu gcagcuagua auaugagccc aguugcauag 60
ucacaaaagu gaucauugga aacugug 87
//
ID ptr-mir-9-2 standard; RNA; PTR; 87 BP.
XX
AC MI0002569;
XX
DE Pan troglodytes miR-9-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751881; MIR9-2.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0002275"
FT /product="ptr-miR-9"
FT /evidence=not_experimental
FT /similarity="MI0000467"
XX
SQ Sequence 87 BP; 26 A; 13 C; 19 G; 0 T; 29 other;
ggaagcgagu uguuaucuuu gguuaucuag cuguaugagu guauuggucu ucauaaagcu 60
agauaaccga aaguaaaaac uccuuca 87
//
ID ggo-mir-9 standard; RNA; GGO; 87 BP.
XX
AC MI0002570;
XX
DE Gorilla gorilla miR-9 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0002276"
FT /product="ggo-miR-9"
FT /evidence=not_experimental
FT /similarity="MI0000467"
XX
SQ Sequence 87 BP; 26 A; 13 C; 19 G; 0 T; 29 other;
ggaagcgagu uguuaucuuu gguuaucuag cuguaugagu guauuggucu ucauaaagcu 60
agauaaccga aaguaaaaac uccuuca 87
//
ID lla-mir-9 standard; RNA; LLA; 87 BP.
XX
AC MI0002571;
XX
DE Lagothrix lagotricha miR-9 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0002277"
FT /product="lla-miR-9"
FT /evidence=not_experimental
FT /similarity="MI0000467"
XX
SQ Sequence 87 BP; 26 A; 13 C; 19 G; 0 T; 29 other;
ggaagcgagu uguuaucuuu gguuaucuag cuguaugagu guauuggucu ucauaaagcu 60
agauaaccga aaguaaaaac uccuuca 87
//
ID mne-mir-9 standard; RNA; MNE; 87 BP.
XX
AC MI0002572;
XX
DE Macaca nemestrina miR-9 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0002278"
FT /product="mne-miR-9"
FT /evidence=not_experimental
FT /similarity="MI0000467"
XX
SQ Sequence 87 BP; 26 A; 13 C; 19 G; 0 T; 29 other;
ggaagcgagu uguuaucuuu gguuaucuag cuguaugagu guauuggucu ucauaaagcu 60
agauaaccga aaguaaaaac uccuuca 87
//
ID age-mir-9 standard; RNA; AGE; 87 BP.
XX
AC MI0002573;
XX
DE Ateles geoffroyi miR-9 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 16..38
FT /accession="MIMAT0002279"
FT /product="age-miR-9"
FT /evidence=not_experimental
FT /similarity="MI0000467"
XX
SQ Sequence 87 BP; 26 A; 13 C; 19 G; 0 T; 29 other;
ggaagcgagu uguuaucuuu gguuaucuag cuguaugagu guauuggucu ucauaaagcu 60
agauaaccga aaguaaaaac uccuuca 87
//
ID ggo-mir-125b-2 standard; RNA; GGO; 89 BP.
XX
AC MI0002574;
XX
DE Gorilla gorilla miR-125b-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0002220"
FT /product="ggo-miR-125b"
FT /evidence=not_experimental
FT /similarity="MI0000470"
XX
SQ Sequence 89 BP; 22 A; 21 C; 23 G; 0 T; 23 other;
accagacuuu uccuaguccc ugagacccua acuugugagg uauuuuagua acaucacaag 60
ucaggcucuu gggaccuagg cggagggga 89
//
ID age-mir-125b-2 standard; RNA; AGE; 89 BP.
XX
AC MI0002575;
XX
DE Ateles geoffroyi miR-125b-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0002221"
FT /product="age-miR-125b"
FT /evidence=not_experimental
FT /similarity="MI0000470"
XX
SQ Sequence 89 BP; 22 A; 21 C; 23 G; 0 T; 23 other;
accagacuuu uccuaguccc ugagacccua acuugugagg uauuuuagua acaucacaag 60
ucaggcucuu gggaccuagg cggagggga 89
//
ID lca-mir-125b standard; RNA; LCA; 89 BP.
XX
AC MI0002576;
XX
DE Lemur catta miR-125b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0002280"
FT /product="lca-miR-125b"
FT /evidence=not_experimental
FT /similarity="MI0000470"
XX
SQ Sequence 89 BP; 22 A; 21 C; 23 G; 0 T; 23 other;
accagacuuu uccuaguccc ugagacccua acuugugagg uauuuuagua acaucacaag 60
ucaggcucuu gggaccuagg cggagggga 89
//
ID ppy-mir-125b-2 standard; RNA; PPY; 89 BP.
XX
AC MI0002577;
XX
DE Pongo pygmaeus miR-125b-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0002223"
FT /product="ppy-miR-125b"
FT /evidence=not_experimental
FT /similarity="MI0000470"
XX
SQ Sequence 89 BP; 22 A; 21 C; 23 G; 0 T; 23 other;
accagacuuu uccuaguccc ugagacccua acuugugagg uauuuuagua acaucacaag 60
ucaggcucuu gggaccuagg cggagggga 89
//
ID ptr-mir-125b-2 standard; RNA; PTR; 89 BP.
XX
AC MI0002578;
XX
DE Pan troglodytes miR-125b-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751882; MIR125B-2.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0002224"
FT /product="ptr-miR-125b"
FT /evidence=not_experimental
FT /similarity="MI0000470"
XX
SQ Sequence 89 BP; 22 A; 21 C; 23 G; 0 T; 23 other;
accagacuuu uccuaguccc ugagacccua acuugugagg uauuuuagua acaucacaag 60
ucaggcucuu gggaccuagg cggagggga 89
//
ID mml-mir-125b-2 standard; RNA; MML; 89 BP.
XX
AC MI0002579;
XX
DE Macaca mulatta miR-125b-2 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315486; MIR125B-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0002225"
FT /product="mml-miR-125b-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000470"
FT miRNA 56..77
FT /accession="MIMAT0031073"
FT /product="mml-miR-125b-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 89 BP; 22 A; 21 C; 23 G; 0 T; 23 other;
accagacuuu uccuaguccc ugagacccua acuugugagg uauuuuagua acaucacaag 60
ucaggcucuu gggaccuagg cggagggga 89
//
ID lla-mir-125b-2 standard; RNA; LLA; 89 BP.
XX
AC MI0002580;
XX
DE Lagothrix lagotricha miR-125b-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0002227"
FT /product="lla-miR-125b"
FT /evidence=not_experimental
FT /similarity="MI0000470"
XX
SQ Sequence 89 BP; 22 A; 21 C; 23 G; 0 T; 23 other;
accagacuuu uccuaguccc ugagacccua acuugugagg uauuuuagua acaucacaag 60
ucaggcucuu gggaccuagg cggagggga 89
//
ID mne-mir-125b-2 standard; RNA; MNE; 89 BP.
XX
AC MI0002581;
XX
DE Macaca nemestrina miR-125b-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 17..38
FT /accession="MIMAT0002228"
FT /product="mne-miR-125b"
FT /evidence=not_experimental
FT /similarity="MI0000470"
XX
SQ Sequence 89 BP; 22 A; 21 C; 23 G; 0 T; 23 other;
accagacuuu uccuaguccc ugagacccua acuugugagg uauuuuagua acaucacaag 60
ucaggcucuu gggaccuagg cggagggga 89
//
ID mml-mir-127 standard; RNA; MML; 97 BP.
XX
AC MI0002582;
XX
DE Macaca mulatta miR-127 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 606739; MIR127.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..45
FT /accession="MIMAT0026570"
FT /product="mml-miR-127-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 57..78
FT /accession="MIMAT0002281"
FT /product="mml-miR-127-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000472"
XX
SQ Sequence 97 BP; 19 A; 26 C; 26 G; 0 T; 26 other;
ugugaucacu gucuccagcc ugcugaagcu cagagggcuc ugauucagaa agaucaucgg 60
auccgucuga gcuuggcugg ucggaagucu ccucauc 97
//
ID ptr-mir-127 standard; RNA; PTR; 97 BP.
XX
AC MI0002583;
XX
DE Pan troglodytes miR-127 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 606740; MIR127.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..78
FT /accession="MIMAT0002282"
FT /product="ptr-miR-127"
FT /evidence=not_experimental
FT /similarity="MI0000472"
XX
SQ Sequence 97 BP; 20 A; 25 C; 26 G; 0 T; 26 other;
ugugaucacu gucuccagcc ugcugaagcu cagagggcuc ugauucagaa agaucaucgg 60
auccgucuga gcuuggcugg ucggaagucu caucauc 97
//
ID ppy-mir-127 standard; RNA; PPY; 97 BP.
XX
AC MI0002584;
XX
DE Pongo pygmaeus miR-127 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..78
FT /accession="MIMAT0002283"
FT /product="ppy-miR-127"
FT /evidence=not_experimental
FT /similarity="MI0000472"
XX
SQ Sequence 97 BP; 20 A; 25 C; 26 G; 0 T; 26 other;
ugugaucacu gucuccagcc ugcugaagcu cagagggcuc ugauucagaa agaucaucgg 60
auccgucuga gcuuggcugg ucggaagucu caucauc 97
//
ID sla-mir-127 standard; RNA; SLA; 97 BP.
XX
AC MI0002585;
XX
DE Saguinus labiatus miR-127 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..78
FT /accession="MIMAT0002284"
FT /product="sla-miR-127"
FT /evidence=not_experimental
FT /similarity="MI0000472"
XX
SQ Sequence 97 BP; 20 A; 25 C; 26 G; 0 T; 26 other;
ugugaucacu gucuccagcc ugcugaagcu cagagggcuc ugauucagaa agaucaucgg 60
auccgucuga gcuuggcugg ucggaagucu caucauc 97
//
ID lla-mir-127 standard; RNA; LLA; 97 BP.
XX
AC MI0002586;
XX
DE Lagothrix lagotricha miR-127 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..78
FT /accession="MIMAT0002285"
FT /product="lla-miR-127"
FT /evidence=not_experimental
FT /similarity="MI0000472"
XX
SQ Sequence 97 BP; 20 A; 25 C; 26 G; 0 T; 26 other;
ugugaucacu gucuccagcc ugcugaagcu cagagggcuc ugauucagaa agaucaucgg 60
auccgucuga gcuuggcugg ucggaagucu caucauc 97
//
ID mne-mir-127 standard; RNA; MNE; 97 BP.
XX
AC MI0002587;
XX
DE Macaca nemestrina miR-127 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..78
FT /accession="MIMAT0002286"
FT /product="mne-miR-127"
FT /evidence=not_experimental
FT /similarity="MI0000472"
XX
SQ Sequence 97 BP; 19 A; 26 C; 26 G; 0 T; 26 other;
ugugaucacu gucuccagcc ugcugaagcu cagagggcuc ugauucagaa agaucaucgg 60
auccgucuga gcuuggcugg ucggaagucu ccucauc 97
//
ID age-mir-127 standard; RNA; AGE; 97 BP.
XX
AC MI0002588;
XX
DE Ateles geoffroyi miR-127 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 57..78
FT /accession="MIMAT0002287"
FT /product="age-miR-127"
FT /evidence=not_experimental
FT /similarity="MI0000472"
XX
SQ Sequence 97 BP; 20 A; 25 C; 26 G; 0 T; 26 other;
ugugaucacu gucuccagcc ugcugaagcu cagagggcuc ugauucagaa agaucaucgg 60
auccgucuga gcuuggcugg ucggaagucu caucauc 97
//
ID ggo-mir-134 standard; RNA; GGO; 73 BP.
XX
AC MI0002589;
XX
DE Gorilla gorilla miR-134 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..28
FT /accession="MIMAT0002288"
FT /product="ggo-miR-134"
FT /evidence=not_experimental
FT /similarity="MI0000474"
XX
SQ Sequence 73 BP; 13 A; 21 C; 22 G; 0 T; 17 other;
uagggugugu gacugguuga ccagaggggc augcacugug uucacccugu gggccaccua 60
gucaccaacc cuc 73
//
ID ppy-mir-134 standard; RNA; PPY; 73 BP.
XX
AC MI0002590;
XX
DE Pongo pygmaeus miR-134 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..28
FT /accession="MIMAT0002289"
FT /product="ppy-miR-134"
FT /evidence=not_experimental
FT /similarity="MI0000474"
XX
SQ Sequence 73 BP; 13 A; 22 C; 22 G; 0 T; 16 other;
cagggugugu gacugguuga ccagaggggc augcacugug uucacccugu gggccaccua 60
gucaccaacc cuc 73
//
ID mne-mir-134 standard; RNA; MNE; 73 BP.
XX
AC MI0002591;
XX
DE Macaca nemestrina miR-134 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..28
FT /accession="MIMAT0002290"
FT /product="mne-miR-134"
FT /evidence=not_experimental
FT /similarity="MI0000474"
XX
SQ Sequence 73 BP; 13 A; 22 C; 22 G; 0 T; 16 other;
cagggugugu gacugguuga ccagaggggc augcacugug uucacccugu gggccaccua 60
gucaccaacc cuc 73
//
ID ppa-mir-134 standard; RNA; PPA; 73 BP.
XX
AC MI0002592;
XX
DE Pan paniscus miR-134 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..28
FT /accession="MIMAT0002291"
FT /product="ppa-miR-134"
FT /evidence=not_experimental
FT /similarity="MI0000474"
XX
SQ Sequence 73 BP; 13 A; 22 C; 22 G; 0 T; 16 other;
cagggugugu gacugguuga ccagaggggc augcacugug uucacccugu gggccaccua 60
gucaccaacc cuc 73
//
ID ptr-mir-136 standard; RNA; PTR; 82 BP.
XX
AC MI0002593;
XX
DE Pan troglodytes miR-136 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751883; MIR136.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0002292"
FT /product="ptr-miR-136"
FT /evidence=not_experimental
FT /similarity="MI0000475"
XX
SQ Sequence 82 BP; 16 A; 18 C; 19 G; 0 T; 29 other;
ugagcccucg gaggacucca uuuguuuuga ugauggauuc uuaugcucca ucaucgucuc 60
aaaugagucu ucagaggguu cu 82
//
ID ggo-mir-136 standard; RNA; GGO; 82 BP.
XX
AC MI0002594;
XX
DE Gorilla gorilla miR-136 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0002293"
FT /product="ggo-miR-136"
FT /evidence=not_experimental
FT /similarity="MI0000475"
XX
SQ Sequence 82 BP; 16 A; 18 C; 19 G; 0 T; 29 other;
ugagcccucg gaggacucca uuuguuuuga ugauggauuc uuaugcucca ucaucgucuc 60
aaaugagucu ucagaggguu cu 82
//
ID ppy-mir-136 standard; RNA; PPY; 82 BP.
XX
AC MI0002595;
XX
DE Pongo pygmaeus miR-136 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0002294"
FT /product="ppy-miR-136"
FT /evidence=not_experimental
FT /similarity="MI0000475"
XX
SQ Sequence 82 BP; 16 A; 18 C; 19 G; 0 T; 29 other;
ugagcccucg gaggacucca uuuguuuuga ugauggauuc uuaugcucca ucaucgucuc 60
aaaugagucu ucagaggguu cu 82
//
ID ppa-mir-136 standard; RNA; PPA; 82 BP.
XX
AC MI0002596;
XX
DE Pan paniscus miR-136 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0002295"
FT /product="ppa-miR-136"
FT /evidence=not_experimental
FT /similarity="MI0000475"
XX
SQ Sequence 82 BP; 16 A; 18 C; 19 G; 0 T; 29 other;
ugagcccucg gaggacucca uuuguuuuga ugauggauuc uuaugcucca ucaucgucuc 60
aaaugagucu ucagaggguu cu 82
//
ID ptr-mir-154 standard; RNA; PTR; 84 BP.
XX
AC MI0002597;
XX
DE Pan troglodytes miR-154 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751884; MIR154.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002296"
FT /product="ptr-miR-154"
FT /evidence=not_experimental
FT /similarity="MI0000480"
XX
SQ Sequence 84 BP; 19 A; 16 C; 18 G; 0 T; 31 other;
gugguacuug aagauagguu auccguguug ccuucgcuuu auuugugacg aaucauacac 60
gguugaccua uuuuucagua ccaa 84
//
ID ggo-mir-154 standard; RNA; GGO; 84 BP.
XX
AC MI0002598;
XX
DE Gorilla gorilla miR-154 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002297"
FT /product="ggo-miR-154"
FT /evidence=not_experimental
FT /similarity="MI0000480"
XX
SQ Sequence 84 BP; 19 A; 16 C; 18 G; 0 T; 31 other;
gugguacuug aagauagguu auccguguug ccuucgcuuu auuugugacg aaucauacac 60
gguugaccua uuuuucagua ccaa 84
//
ID ppy-mir-154 standard; RNA; PPY; 84 BP.
XX
AC MI0002599;
XX
DE Pongo pygmaeus miR-154 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002298"
FT /product="ppy-miR-154"
FT /evidence=not_experimental
FT /similarity="MI0000480"
XX
SQ Sequence 84 BP; 19 A; 16 C; 18 G; 0 T; 31 other;
gugguacuug aagauagguu auccguguug ccuucgcuuu auuugugacg aaucauacac 60
gguugaccua uuuuucagua ccaa 84
//
ID mne-mir-154 standard; RNA; MNE; 84 BP.
XX
AC MI0002600;
XX
DE Macaca nemestrina miR-154 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002299"
FT /product="mne-miR-154"
FT /evidence=not_experimental
FT /similarity="MI0000480"
XX
SQ Sequence 84 BP; 20 A; 16 C; 18 G; 0 T; 30 other;
gagguacuug aagauagguu auccguguug ccuucgcuuu auuugugacg aaucauacac 60
gguugaccua uuuuucagua ccaa 84
//
ID ppa-mir-154 standard; RNA; PPA; 84 BP.
XX
AC MI0002601;
XX
DE Pan paniscus miR-154 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002300"
FT /product="ppa-miR-154"
FT /evidence=not_experimental
FT /similarity="MI0000480"
XX
SQ Sequence 84 BP; 19 A; 16 C; 18 G; 0 T; 31 other;
gugguacuug aagauagguu auccguguug ccuucgcuuu auuugugacg aaucauacac 60
gguugaccua uuuuucagua ccaa 84
//
ID ptr-mir-184 standard; RNA; PTR; 84 BP.
XX
AC MI0002602;
XX
DE Pan troglodytes miR-184 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751885; MIR184.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0002301"
FT /product="ptr-miR-184"
FT /evidence=not_experimental
FT /similarity="MI0000481"
XX
SQ Sequence 84 BP; 19 A; 19 C; 22 G; 0 T; 24 other;
ccagucacgu ccccuuauca cuuuuccagc ccagcuuugu gacuguaagu guuggacgga 60
gaacugauaa ggguagguga uuga 84
//
ID ppy-mir-184 standard; RNA; PPY; 84 BP.
XX
AC MI0002603;
XX
DE Pongo pygmaeus miR-184 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0002302"
FT /product="ppy-miR-184"
FT /evidence=not_experimental
FT /similarity="MI0000481"
XX
SQ Sequence 84 BP; 19 A; 19 C; 22 G; 0 T; 24 other;
ccagucacgu ccccuuauca cuuuuccagc ccagcuuugu gacuguaagu guuggacgga 60
gaacugauaa ggguagguga uuga 84
//
ID mne-mir-184 standard; RNA; MNE; 84 BP.
XX
AC MI0002604;
XX
DE Macaca nemestrina miR-184 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0002303"
FT /product="mne-miR-184"
FT /evidence=not_experimental
FT /similarity="MI0000481"
XX
SQ Sequence 84 BP; 20 A; 18 C; 21 G; 0 T; 25 other;
ucagucacgu ccccuuauca cuuuuccagc ccagcuuuau gacuguaagu guuggacgga 60
gaacugauaa ggguagguga uuga 84
//
ID ptr-mir-186 standard; RNA; PTR; 86 BP.
XX
AC MI0002605;
XX
DE Pan troglodytes miR-186 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751886; MIR186.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0002304"
FT /product="ptr-miR-186"
FT /evidence=not_experimental
FT /similarity="MI0000483"
XX
SQ Sequence 86 BP; 18 A; 13 C; 18 G; 0 T; 37 other;
ugcuuguaac uuuccaaaga auucuccuuu ugggcuuucu gguuuuauuu uaagcccaaa 60
ggugaauuuu uugggaaguu ugagcu 86
//
ID ggo-mir-186 standard; RNA; GGO; 86 BP.
XX
AC MI0002606;
XX
DE Gorilla gorilla miR-186 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0002305"
FT /product="ggo-miR-186"
FT /evidence=not_experimental
FT /similarity="MI0000483"
XX
SQ Sequence 86 BP; 18 A; 13 C; 18 G; 0 T; 37 other;
ugcuuguaac uuuccaaaga auucuccuuu ugggcuuucu gguuuuauuu uaagcccaaa 60
ggugaauuuu uugggaaguu ugagcu 86
//
ID ppa-mir-186 standard; RNA; PPA; 86 BP.
XX
AC MI0002607;
XX
DE Pan paniscus miR-186 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..37
FT /accession="MIMAT0002306"
FT /product="ppa-miR-186"
FT /evidence=not_experimental
FT /similarity="MI0000483"
XX
SQ Sequence 86 BP; 18 A; 13 C; 18 G; 0 T; 37 other;
ugcuuguaac uuuccaaaga auucuccuuu ugggcuuucu gguuuuauuu uaagcccaaa 60
ggugaauuuu uugggaaguu ugagcu 86
//
ID mml-mir-188 standard; RNA; MML; 86 BP.
XX
AC MI0002608;
XX
DE Macaca mulatta miR-188 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315380; MIR188.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002307"
FT /product="mml-miR-188-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000484"
FT miRNA 55..74
FT /accession="MIMAT0026571"
FT /product="mml-miR-188-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 86 BP; 16 A; 25 C; 23 G; 0 T; 22 other;
ugcucccucu cucacauccc uugcauggug gagggugagc uuuaugaaaa ccccucccac 60
augcaggguu ugcaggaugg ugagcc 86
//
ID ptr-mir-188 standard; RNA; PTR; 86 BP.
XX
AC MI0002609;
XX
DE Pan troglodytes miR-188 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751887; MIR188.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002308"
FT /product="ptr-miR-188"
FT /evidence=not_experimental
FT /similarity="MI0000484"
XX
SQ Sequence 86 BP; 16 A; 27 C; 22 G; 0 T; 21 other;
ugcucccucu cucacauccc uugcauggug gagggugaac uuucugaaaa ccccucccac 60
augcaggguu ugcaggaugg cgagcc 86
//
ID ppy-mir-188 standard; RNA; PPY; 86 BP.
XX
AC MI0002610;
XX
DE Pongo pygmaeus miR-188 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002309"
FT /product="ppy-miR-188"
FT /evidence=not_experimental
FT /similarity="MI0000484"
XX
SQ Sequence 86 BP; 15 A; 27 C; 23 G; 0 T; 21 other;
ugcucccucu cucacauccc uugcauggug gagggugagc uuucugaaaa ccccucccac 60
augcaggguu ugcaggaugg cgagcc 86
//
ID mne-mir-188 standard; RNA; MNE; 86 BP.
XX
AC MI0002611;
XX
DE Macaca nemestrina miR-188 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002310"
FT /product="mne-miR-188"
FT /evidence=not_experimental
FT /similarity="MI0000484"
XX
SQ Sequence 86 BP; 16 A; 25 C; 23 G; 0 T; 22 other;
ugcucccucu cucacauccc uugcauggug gagggugagc uuuaugaaaa ccccucccac 60
augcaggguu ugcaggaugg ugagcc 86
//
ID ppa-mir-188 standard; RNA; PPA; 86 BP.
XX
AC MI0002612;
XX
DE Pan paniscus miR-188 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002311"
FT /product="ppa-miR-188"
FT /evidence=not_experimental
FT /similarity="MI0000484"
XX
SQ Sequence 86 BP; 15 A; 27 C; 23 G; 0 T; 21 other;
ugcucccucu cucacauccc uugcauggug gagggugagc uuucugaaaa ccccucccac 60
augcaggguu ugcaggaugg cgagcc 86
//
ID mml-mir-190a standard; RNA; MML; 85 BP.
XX
AC MI0002613;
XX
DE Macaca mulatta miR-190a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315126; MIR190A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002312"
FT /product="mml-miR-190a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000486"
FT miRNA 52..72
FT /accession="MIMAT0026572"
FT /product="mml-miR-190a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 85 BP; 22 A; 15 C; 14 G; 0 T; 34 other;
ugcaggccuc ugugugauau guuugauaua uuagguuguu auuuaaucca acuauauauc 60
aaacauauuc cuacaguguc uugcc 85
//
ID ptr-mir-190a standard; RNA; PTR; 85 BP.
XX
AC MI0002614;
XX
DE Pan troglodytes miR-190a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751888; MIR190A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002313"
FT /product="ptr-miR-190a"
FT /evidence=not_experimental
FT /similarity="MI0000486"
XX
SQ Sequence 85 BP; 22 A; 15 C; 14 G; 0 T; 34 other;
ugcaggccuc ugugugauau guuugauaua uuagguuguu auuuaaucca acuauauauc 60
aaacauauuc cuacaguguc uugcc 85
//
ID ggo-mir-190a standard; RNA; GGO; 85 BP.
XX
AC MI0002615;
XX
DE Gorilla gorilla miR-190 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002314"
FT /product="ggo-miR-190a"
FT /evidence=not_experimental
FT /similarity="MI0000486"
XX
SQ Sequence 85 BP; 22 A; 15 C; 14 G; 0 T; 34 other;
ugcaggccuc ugugugauau guuugauaua uuagguuguu auuuaaucca acuauauauc 60
aaacauauuc cuacaguguc uugcc 85
//
ID ppa-mir-190 standard; RNA; PPA; 85 BP.
XX
AC MI0002616;
XX
DE Pan paniscus miR-190 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..36
FT /accession="MIMAT0002315"
FT /product="ppa-miR-190"
FT /evidence=not_experimental
FT /similarity="MI0000486"
XX
SQ Sequence 85 BP; 22 A; 15 C; 14 G; 0 T; 34 other;
ugcaggccuc ugugugauau guuugauaua uuagguuguu auuuaaucca acuauauauc 60
aaacauauuc cuacaguguc uugcc 85
//
ID ggo-mir-195 standard; RNA; GGO; 87 BP.
XX
AC MI0002617;
XX
DE Gorilla gorilla miR-195 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0002316"
FT /product="ggo-miR-195"
FT /evidence=not_experimental
FT /similarity="MI0000489"
XX
SQ Sequence 87 BP; 19 A; 21 C; 28 G; 0 T; 19 other;
agcuucccug gcucuagcag cacagaaaua uuggcacagg gaagcgaguc ugccaauauu 60
ggcugugcug cuccaggcag gguggug 87
//
ID ppa-mir-195 standard; RNA; PPA; 87 BP.
XX
AC MI0002618;
XX
DE Pan paniscus miR-195 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 15..35
FT /accession="MIMAT0002317"
FT /product="ppa-miR-195"
FT /evidence=not_experimental
FT /similarity="MI0000489"
XX
SQ Sequence 87 BP; 19 A; 21 C; 28 G; 0 T; 19 other;
agcuucccug gcucuagcag cacagaaaua uuggcacagg gaagcgaguc ugccaauauu 60
ggcugugcug cuccaggcag gguggug 87
//
ID ppy-mir-206 standard; RNA; PPY; 86 BP.
XX
AC MI0002619;
XX
DE Pongo pygmaeus miR-206 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0002318"
FT /product="ppy-miR-206"
FT /evidence=not_experimental
FT /similarity="MI0000490"
XX
SQ Sequence 86 BP; 18 A; 17 C; 22 G; 0 T; 29 other;
ugcuucccga ggccacaugc uucuuuauau ccccauaugg auuacuuugc uauggaaugu 60
aaggaagugu gugguuucgg caagug 86
//
ID mne-mir-206 standard; RNA; MNE; 86 BP.
XX
AC MI0002620;
XX
DE Macaca nemestrina miR-206 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0002319"
FT /product="mne-miR-206"
FT /evidence=not_experimental
FT /similarity="MI0000490"
XX
SQ Sequence 86 BP; 18 A; 17 C; 22 G; 0 T; 29 other;
ugcuucccga ggccacaugc uucuuuauau ccccauaugg auuacuuugc uauggaaugu 60
aaggaagugu gugguuucgg caagug 86
//
ID mml-mir-21 standard; RNA; MML; 72 BP.
XX
AC MI0002621;
XX
DE Macaca mulatta miR-21 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315127; MIR21.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0002320"
FT /product="mml-miR-21-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000077"
FT miRNA 46..67
FT /accession="MIMAT0026573"
FT /product="mml-miR-21-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 72 BP; 16 A; 15 C; 20 G; 0 T; 21 other;
ugucggguag cuuaucagac ugauguugac uguugaaucu cauggcaaca ccagucgaug 60
ggcugucuga ca 72
//
ID ptr-mir-21 standard; RNA; PTR; 72 BP.
XX
AC MI0002622;
XX
DE Pan troglodytes miR-21 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751889; MIR21.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0002321"
FT /product="ptr-miR-21"
FT /evidence=not_experimental
FT /similarity="MI0000077"
XX
SQ Sequence 72 BP; 16 A; 15 C; 20 G; 0 T; 21 other;
ugucggguag cuuaucagac ugauguugac uguugaaucu cauggcaaca ccagucgaug 60
ggcugucuga ca 72
//
ID ggo-mir-21 standard; RNA; GGO; 72 BP.
XX
AC MI0002623;
XX
DE Gorilla gorilla miR-21 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0002322"
FT /product="ggo-miR-21"
FT /evidence=not_experimental
FT /similarity="MI0000077"
XX
SQ Sequence 72 BP; 16 A; 15 C; 20 G; 0 T; 21 other;
ugucggguag cuuaucagac ugauguugac uguugaaucu cauggcaaca ccagucgaug 60
ggcugucuga ca 72
//
ID ppy-mir-21 standard; RNA; PPY; 72 BP.
XX
AC MI0002624;
XX
DE Pongo pygmaeus miR-21 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0002323"
FT /product="ppy-miR-21"
FT /evidence=not_experimental
FT /similarity="MI0000077"
XX
SQ Sequence 72 BP; 16 A; 15 C; 20 G; 0 T; 21 other;
ugucggguag cuuaucagac ugauguugac uguugaaucu cauggcaaca ccagucgaug 60
ggcugucuga ca 72
//
ID mne-mir-21 standard; RNA; MNE; 72 BP.
XX
AC MI0002625;
XX
DE Macaca nemestrina miR-21 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0002324"
FT /product="mne-miR-21"
FT /evidence=not_experimental
FT /similarity="MI0000077"
XX
SQ Sequence 72 BP; 16 A; 15 C; 20 G; 0 T; 21 other;
ugucggguag cuuaucagac ugauguugac uguugaaucu cauggcaaca ccagucgaug 60
ggcugucuga ca 72
//
ID age-mir-21 standard; RNA; AGE; 72 BP.
XX
AC MI0002626;
XX
DE Ateles geoffroyi miR-21 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0002325"
FT /product="age-miR-21"
FT /evidence=not_experimental
FT /similarity="MI0000077"
XX
SQ Sequence 72 BP; 16 A; 15 C; 20 G; 0 T; 21 other;
ugucggguag cuuaucagac ugauguugac uguugaaucu cauggcaaca ccagucgaug 60
ggcugucuga ca 72
//
ID ppa-mir-21 standard; RNA; PPA; 72 BP.
XX
AC MI0002627;
XX
DE Pan paniscus miR-21 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0002326"
FT /product="ppa-miR-21"
FT /evidence=not_experimental
FT /similarity="MI0000077"
XX
SQ Sequence 72 BP; 16 A; 15 C; 20 G; 0 T; 21 other;
ugucggguag cuuaucagac ugauguugac uguugaaucu cauggcaaca ccagucgaug 60
ggcugucuga ca 72
//
ID age-mir-22 standard; RNA; AGE; 85 BP.
XX
AC MI0002628;
XX
DE Ateles geoffroyi miR-22 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0002327"
FT /product="age-miR-22"
FT /evidence=not_experimental
FT /similarity="MI0000078"
XX
SQ Sequence 85 BP; 17 A; 24 C; 22 G; 0 T; 22 other;
ggcugagccg caguaguucu ucaguggcaa gcuuuauguc cugacccagc uaaagcugcc 60
aguugaagaa cuguugcccu cugcc 85
//
ID ppa-mir-22 standard; RNA; PPA; 85 BP.
XX
AC MI0002629;
XX
DE Pan paniscus miR-22 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0002328"
FT /product="ppa-miR-22"
FT /evidence=not_experimental
FT /similarity="MI0000078"
XX
SQ Sequence 85 BP; 17 A; 24 C; 22 G; 0 T; 22 other;
ggcugagccg caguaguucu ucaguggcaa gcuuuauguc cugacccagc uaaagcugcc 60
aguugaagaa cuguugcccu cugcc 85
//
ID lca-mir-22 standard; RNA; LCA; 85 BP.
XX
AC MI0002630;
XX
DE Lemur catta miR-22 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0002329"
FT /product="lca-miR-22"
FT /evidence=not_experimental
FT /similarity="MI0000078"
XX
SQ Sequence 85 BP; 17 A; 24 C; 22 G; 0 T; 22 other;
ggcugagccg caguaguucu ucaguggcaa gcuuuauguc cugacccagc uaaagcugcc 60
aguugaagaa cuguugcccu cugcc 85
//
ID mml-mir-22 standard; RNA; MML; 85 BP.
XX
AC MI0002631;
XX
DE Macaca mulatta miR-22 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315487; MIR22.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0002330"
FT /product="mml-miR-22"
FT /evidence=not_experimental
FT /similarity="MI0000078"
XX
SQ Sequence 85 BP; 17 A; 24 C; 22 G; 0 T; 22 other;
ggcugagccg caguaguucu ucaguggcaa gcuuuauguc cugacccagc uaaagcugcc 60
aguugaagaa cuguugcccu cugcc 85
//
ID ppy-mir-22 standard; RNA; PPY; 85 BP.
XX
AC MI0002632;
XX
DE Pongo pygmaeus miR-22 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0002331"
FT /product="ppy-miR-22"
FT /evidence=not_experimental
FT /similarity="MI0000078"
XX
SQ Sequence 85 BP; 17 A; 24 C; 22 G; 0 T; 22 other;
ggcugagccg caguaguucu ucaguggcaa gcuuuauguc cugacccagc uaaagcugcc 60
aguugaagaa cuguugcccu cugcc 85
//
ID ptr-mir-22 standard; RNA; PTR; 85 BP.
XX
AC MI0002633;
XX
DE Pan troglodytes miR-22 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751890; MIR22.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0002332"
FT /product="ptr-miR-22"
FT /evidence=not_experimental
FT /similarity="MI0000078"
XX
SQ Sequence 85 BP; 17 A; 24 C; 22 G; 0 T; 22 other;
ggcugagccg caguaguucu ucaguggcaa gcuuuauguc cugacccagc uaaagcugcc 60
aguugaagaa cuguugcccu cugcc 85
//
ID sla-mir-22 standard; RNA; SLA; 85 BP.
XX
AC MI0002634;
XX
DE Saguinus labiatus miR-22 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0002333"
FT /product="sla-miR-22"
FT /evidence=not_experimental
FT /similarity="MI0000078"
XX
SQ Sequence 85 BP; 16 A; 25 C; 22 G; 0 T; 22 other;
ggcugagccg caguaguucu ucaguggcaa gcuuuauguc cugaccccgc uaaagcugcc 60
aguugaagaa cuguugcccu cugcc 85
//
ID lla-mir-22 standard; RNA; LLA; 85 BP.
XX
AC MI0002635;
XX
DE Lagothrix lagotricha miR-22 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0002334"
FT /product="lla-miR-22"
FT /evidence=not_experimental
FT /similarity="MI0000078"
XX
SQ Sequence 85 BP; 17 A; 24 C; 22 G; 0 T; 22 other;
ggcugagccg caguaguucu ucaguggcaa gcuuuauguc cugacccagc uaaagcugcc 60
aguugaagaa cuguugcccu cugcc 85
//
ID mne-mir-22 standard; RNA; MNE; 85 BP.
XX
AC MI0002636;
XX
DE Macaca nemestrina miR-22 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..74
FT /accession="MIMAT0002335"
FT /product="mne-miR-22"
FT /evidence=not_experimental
FT /similarity="MI0000078"
XX
SQ Sequence 85 BP; 17 A; 24 C; 22 G; 0 T; 22 other;
ggcugagccg caguaguucu ucaguggcaa gcuuuauguc cugacccagc uaaagcugcc 60
aguugaagaa cuguugcccu cugcc 85
//
ID mml-mir-24-1 standard; RNA; MML; 68 BP.
XX
AC MI0002637;
XX
DE Macaca mulatta miR-24-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315128; MIR24-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0002336"
FT /product="mml-miR-24-5p"
FT /evidence=not_experimental
FT /similarity="MI0000080"
FT miRNA 44..65
FT /accession="MIMAT0002337"
FT /product="mml-miR-24-3p"
FT /evidence=not_experimental
FT /similarity="MI0000080"
XX
SQ Sequence 68 BP; 16 A; 18 C; 16 G; 0 T; 18 other;
cuccggugcc uacugagcug auaucaguuc ucauuuuaca cacuggcuca guucagcagg 60
aacaggag 68
//
ID ppy-mir-24-1 standard; RNA; PPY; 68 BP.
XX
AC MI0002638;
XX
DE Pongo pygmaeus miR-24-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0002338"
FT /product="ppy-miR-24-5p"
FT /evidence=not_experimental
FT /similarity="MI0000080"
FT miRNA 44..65
FT /accession="MIMAT0002339"
FT /product="ppy-miR-24-3p"
FT /evidence=not_experimental
FT /similarity="MI0000080"
XX
SQ Sequence 68 BP; 16 A; 18 C; 16 G; 0 T; 18 other;
cuccggugcc uacugagcug auaucaguuc ucauuuuaca cacuggcuca guucagcagg 60
aacaggag 68
//
ID mne-mir-24-1 standard; RNA; MNE; 68 BP.
XX
AC MI0002639;
XX
DE Macaca nemestrina miR-24-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0002340"
FT /product="mne-miR-24-5p"
FT /evidence=not_experimental
FT /similarity="MI0000080"
FT miRNA 44..65
FT /accession="MIMAT0002341"
FT /product="mne-miR-24-3p"
FT /evidence=not_experimental
FT /similarity="MI0000080"
XX
SQ Sequence 68 BP; 16 A; 18 C; 16 G; 0 T; 18 other;
cuccggugcc uacugagcug auaucaguuc ucauuuuaca cacuggcuca guucagcagg 60
aacaggag 68
//
ID ppa-mir-24-1 standard; RNA; PPA; 68 BP.
XX
AC MI0002640;
XX
DE Pan paniscus miR-24-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..28
FT /accession="MIMAT0002342"
FT /product="ppa-miR-24-5p"
FT /evidence=not_experimental
FT /similarity="MI0000080"
FT miRNA 44..65
FT /accession="MIMAT0002343"
FT /product="ppa-miR-24-3p"
FT /evidence=not_experimental
FT /similarity="MI0000080"
XX
SQ Sequence 68 BP; 16 A; 18 C; 16 G; 0 T; 18 other;
cuccggugcc uacugagcug auaucaguuc ucauuuuaca cacuggcuca guucagcagg 60
aacaggag 68
//
ID ptr-mir-26a-1 standard; RNA; PTR; 77 BP.
XX
AC MI0002641;
XX
DE Pan troglodytes miR-26a-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751891; MIR26A-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0002344"
FT /product="ptr-miR-26a"
FT /evidence=not_experimental
FT /similarity="MI0000083"
XX
SQ Sequence 77 BP; 14 A; 19 C; 24 G; 0 T; 20 other;
guggccucgu ucaaguaauc caggauaggc ugugcagguc ccaaugggcc uauucuuggu 60
uacuugcacg gggacgc 77
//
ID ggo-mir-26a standard; RNA; GGO; 77 BP.
XX
AC MI0002642;
XX
DE Gorilla gorilla miR-26a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0002345"
FT /product="ggo-miR-26a"
FT /evidence=not_experimental
FT /similarity="MI0000083"
XX
SQ Sequence 77 BP; 14 A; 19 C; 24 G; 0 T; 20 other;
guggccucgu ucaaguaauc caggauaggc ugugcagguc ccaaugggcc uauucuuggu 60
uacuugcacg gggacgc 77
//
ID ppy-mir-26a standard; RNA; PPY; 77 BP.
XX
AC MI0002643;
XX
DE Pongo pygmaeus miR-26a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0002346"
FT /product="ppy-miR-26a"
FT /evidence=not_experimental
FT /similarity="MI0000083"
XX
SQ Sequence 77 BP; 14 A; 19 C; 24 G; 0 T; 20 other;
guggccucgu ucaaguaauc caggauaggc ugugcagguc ccaaugggcc uauucuuggu 60
uacuugcacg gggacgc 77
//
ID lla-mir-26a standard; RNA; LLA; 77 BP.
XX
AC MI0002644;
XX
DE Lagothrix lagotricha miR-26a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0002347"
FT /product="lla-miR-26a"
FT /evidence=not_experimental
FT /similarity="MI0000083"
XX
SQ Sequence 77 BP; 14 A; 19 C; 24 G; 0 T; 20 other;
guggccucgu ucaaguaauc caggauaggc ugugcagguc ccaaugggcc uauucuuggu 60
uacuugcacg gggacgc 77
//
ID mne-mir-26a standard; RNA; MNE; 77 BP.
XX
AC MI0002645;
XX
DE Macaca nemestrina miR-26a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0002348"
FT /product="mne-miR-26a"
FT /evidence=not_experimental
FT /similarity="MI0000083"
XX
SQ Sequence 77 BP; 15 A; 19 C; 23 G; 0 T; 20 other;
guggccucgu ucaaguaauc caggauaggc ugugcagguc ccaaugggcc uauucuugau 60
uacuugcacg gggacgc 77
//
ID mml-mir-26a-1 standard; RNA; MML; 77 BP.
XX
AC MI0002646;
XX
DE Macaca mulatta miR-26a-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315436; MIR26A-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0002349"
FT /product="mml-miR-26a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000083"
FT miRNA 49..70
FT /accession="MIMAT0026574"
FT /product="mml-miR-26a-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 77 BP; 14 A; 19 C; 24 G; 0 T; 20 other;
guggccucgu ucaaguaauc caggauaggc ugugcagguc ccaaugggcc uauucuuggu 60
uacuugcacg gggacgc 77
//
ID ppa-mir-26a standard; RNA; PPA; 77 BP.
XX
AC MI0002647;
XX
DE Pan paniscus miR-26a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..31
FT /accession="MIMAT0002350"
FT /product="ppa-miR-26a"
FT /evidence=not_experimental
FT /similarity="MI0000083"
XX
SQ Sequence 77 BP; 14 A; 19 C; 24 G; 0 T; 20 other;
guggccucgu ucaaguaauc caggauaggc ugugcagguc ccaaugggcc uauucuuggu 60
uacuugcacg gggacgc 77
//
ID age-mir-28 standard; RNA; AGE; 86 BP.
XX
AC MI0002648;
XX
DE Ateles geoffroyi miR-28 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002351"
FT /product="age-miR-28"
FT /evidence=not_experimental
FT /similarity="MI0000086"
XX
SQ Sequence 86 BP; 15 A; 24 C; 22 G; 0 T; 25 other;
gguccuugcc cucaaggagc ucacagucua uugaguugcc uuucugacuu ucccacuaga 60
uugugagcuc cuggagggca ggcacu 86
//
ID mml-mir-28 standard; RNA; MML; 86 BP.
XX
AC MI0002649;
XX
DE Macaca mulatta miR-28 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315381; MIR28.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002352"
FT /product="mml-miR-28-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000086"
FT miRNA 54..75
FT /accession="MIMAT0026575"
FT /product="mml-miR-28-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 86 BP; 15 A; 23 C; 22 G; 0 T; 26 other;
gguccuugcc cucaaggagc ucacagucua uugaguuucc uuugugacuu ucccacuaga 60
uugugagcuc cuggagggca ggcacu 86
//
ID ptr-mir-28 standard; RNA; PTR; 86 BP.
XX
AC MI0002650;
XX
DE Pan troglodytes miR-28 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751892; MIR28.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002353"
FT /product="ptr-miR-28"
FT /evidence=not_experimental
FT /similarity="MI0000086"
XX
SQ Sequence 86 BP; 16 A; 24 C; 21 G; 0 T; 25 other;
gguccuugcc cucaaggagc ucacagucua uugaguuacc uuucugacuu ucccacuaga 60
uugugagcuc cuggagggca ggcacu 86
//
ID ggo-mir-28 standard; RNA; GGO; 86 BP.
XX
AC MI0002651;
XX
DE Gorilla gorilla miR-28 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 22453055.
RA Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J;
RT "Annotation of primate miRNAs by high throughput sequencing of small RNA
RT libraries";
RL BMC Genomics. 13:116(2012).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002354"
FT /product="ggo-miR-28"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000086"
XX
SQ Sequence 86 BP; 16 A; 24 C; 21 G; 0 T; 25 other;
gguccuugcc cucaaggagc ucacagucua uugaguuacc uuucugacuu ucccacuaga 60
uugugagcuc cuggagggca ggcacu 86
//
ID ppy-mir-28 standard; RNA; PPY; 86 BP.
XX
AC MI0002652;
XX
DE Pongo pygmaeus miR-28 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002355"
FT /product="ppy-miR-28"
FT /evidence=not_experimental
FT /similarity="MI0000086"
XX
SQ Sequence 86 BP; 16 A; 23 C; 21 G; 0 T; 26 other;
gguccuugcc cucaaggagc ucacagucua uugaguuacc uuucugauuu ucccacuaga 60
uugugagcuc cuggagggca ggcacu 86
//
ID mne-mir-28 standard; RNA; MNE; 86 BP.
XX
AC MI0002653;
XX
DE Macaca nemestrina miR-28 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002356"
FT /product="mne-miR-28"
FT /evidence=not_experimental
FT /similarity="MI0000086"
XX
SQ Sequence 86 BP; 15 A; 24 C; 21 G; 0 T; 26 other;
gguccuugcc cucaaggagc ucacagucua uugaguuucc uuucugacuu ucccacuaga 60
uugugagcuc cuggagggca ggcacu 86
//
ID sla-mir-28 standard; RNA; SLA; 86 BP.
XX
AC MI0002654;
XX
DE Saguinus labiatus miR-28 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002357"
FT /product="sla-miR-28"
FT /evidence=not_experimental
FT /similarity="MI0000086"
XX
SQ Sequence 86 BP; 17 A; 24 C; 20 G; 0 T; 25 other;
gguccuugcc cucaaggagc ucacagucua uugaguugcc uuucuaacuu ucccacuaga 60
uuguaagcuc cuggagggca ggcacu 86
//
ID lla-mir-28 standard; RNA; LLA; 86 BP.
XX
AC MI0002655;
XX
DE Lagothrix lagotricha miR-28 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002358"
FT /product="lla-miR-28"
FT /evidence=not_experimental
FT /similarity="MI0000086"
XX
SQ Sequence 86 BP; 15 A; 24 C; 22 G; 0 T; 25 other;
gguccuugcc cucaaggagc ucacagucua uugaguugcc uuucugacuu ucccacuaga 60
uugugagcuc cuggagggca ggcacu 86
//
ID ppa-mir-28 standard; RNA; PPA; 86 BP.
XX
AC MI0002656;
XX
DE Pan paniscus miR-28 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002359"
FT /product="ppa-miR-28"
FT /evidence=not_experimental
FT /similarity="MI0000086"
XX
SQ Sequence 86 BP; 16 A; 24 C; 21 G; 0 T; 25 other;
gguccuugcc cucaaggagc ucacagucua uugaguuacc uuucugacuu ucccacuaga 60
uugugagcuc cuggagggca ggcacu 86
//
ID ggo-mir-29a standard; RNA; GGO; 64 BP.
XX
AC MI0002657;
XX
DE Gorilla gorilla miR-29a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 41..62
FT /accession="MIMAT0002360"
FT /product="ggo-miR-29a"
FT /evidence=not_experimental
FT /similarity="MI0000087"
XX
SQ Sequence 64 BP; 17 A; 10 C; 11 G; 0 T; 26 other;
augacugauu ucuuuuggug uucagaguca auauaauuuu cuagcaccau cugaaaucgg 60
uuau 64
//
ID age-mir-29a standard; RNA; AGE; 64 BP.
XX
AC MI0002658;
XX
DE Ateles geoffroyi miR-29a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 41..62
FT /accession="MIMAT0002361"
FT /product="age-miR-29a"
FT /evidence=not_experimental
FT /similarity="MI0000087"
XX
SQ Sequence 64 BP; 17 A; 10 C; 11 G; 0 T; 26 other;
augacugauu ucuuuuggug uucagaguca auauaauuuu cuagcaccau cugaaaucgg 60
uuau 64
//
ID ppa-mir-29a standard; RNA; PPA; 64 BP.
XX
AC MI0002659;
XX
DE Pan paniscus miR-29a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 41..62
FT /accession="MIMAT0002362"
FT /product="ppa-miR-29a"
FT /evidence=not_experimental
FT /similarity="MI0000087"
XX
SQ Sequence 64 BP; 17 A; 10 C; 11 G; 0 T; 26 other;
augacugauu ucuuuuggug uucagaguca auauaauuuu cuagcaccau cugaaaucgg 60
uuau 64
//
ID ppy-mir-29a standard; RNA; PPY; 64 BP.
XX
AC MI0002660;
XX
DE Pongo pygmaeus miR-29a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 41..62
FT /accession="MIMAT0002363"
FT /product="ppy-miR-29a"
FT /evidence=not_experimental
FT /similarity="MI0000087"
XX
SQ Sequence 64 BP; 17 A; 10 C; 11 G; 0 T; 26 other;
augacugauu ucuuuuggug uucagaguca auauaauuuu cuagcaccau cugaaaucgg 60
uuau 64
//
ID ptr-mir-29a standard; RNA; PTR; 64 BP.
XX
AC MI0002661;
XX
DE Pan troglodytes miR-29a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751893; MIR29A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 41..62
FT /accession="MIMAT0002364"
FT /product="ptr-miR-29a"
FT /evidence=not_experimental
FT /similarity="MI0000087"
XX
SQ Sequence 64 BP; 17 A; 10 C; 11 G; 0 T; 26 other;
augacugauu ucuuuuggug uucagaguca auauaauuuu cuagcaccau cugaaaucgg 60
uuau 64
//
ID mml-mir-29a standard; RNA; MML; 64 BP.
XX
AC MI0002662;
XX
DE Macaca mulatta miR-29a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315129; MIR29A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 5..26
FT /accession="MIMAT0026576"
FT /product="mml-miR-29a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 41..62
FT /accession="MIMAT0002365"
FT /product="mml-miR-29a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000087"
XX
SQ Sequence 64 BP; 17 A; 10 C; 11 G; 0 T; 26 other;
augacugauu ucuuuuggug uucagaguca auauaauuuu cuagcaccau cugaaaucgg 60
uuau 64
//
ID sla-mir-29a standard; RNA; SLA; 64 BP.
XX
AC MI0002663;
XX
DE Saguinus labiatus miR-29a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 41..62
FT /accession="MIMAT0002366"
FT /product="sla-miR-29a"
FT /evidence=not_experimental
FT /similarity="MI0000087"
XX
SQ Sequence 64 BP; 17 A; 10 C; 11 G; 0 T; 26 other;
augacugauu ucuuuuggug uucagaguca auauaauuuu cuagcaccau cugaaaucgg 60
uuau 64
//
ID lla-mir-29a standard; RNA; LLA; 64 BP.
XX
AC MI0002664;
XX
DE Lagothrix lagotricha miR-29a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 41..62
FT /accession="MIMAT0002367"
FT /product="lla-miR-29a"
FT /evidence=not_experimental
FT /similarity="MI0000087"
XX
SQ Sequence 64 BP; 17 A; 10 C; 11 G; 0 T; 26 other;
augacugauu ucuuuuggug uucagaguca auauaauuuu cuagcaccau cugaaaucgg 60
uuau 64
//
ID mne-mir-29a standard; RNA; MNE; 64 BP.
XX
AC MI0002665;
XX
DE Macaca nemestrina miR-29a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 41..62
FT /accession="MIMAT0002368"
FT /product="mne-miR-29a"
FT /evidence=not_experimental
FT /similarity="MI0000087"
XX
SQ Sequence 64 BP; 17 A; 10 C; 11 G; 0 T; 26 other;
augacugauu ucuuuuggug uucagaguca auauaauuuu cuagcaccau cugaaaucgg 60
uuau 64
//
ID mml-mir-30a standard; RNA; MML; 71 BP.
XX
AC MI0002666;
XX
DE Macaca mulatta miR-30a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315130; MIR30A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0002369"
FT /product="mml-miR-30a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000088"
FT miRNA 47..68
FT /accession="MIMAT0002370"
FT /product="mml-miR-30a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000088"
XX
SQ Sequence 71 BP; 16 A; 16 C; 21 G; 0 T; 18 other;
gcgacuguaa acauccucga cuggaagcug ugaagccaua gaugggcuuu cagucggaug 60
uuugcagcug c 71
//
ID ptr-mir-30a standard; RNA; PTR; 71 BP.
XX
AC MI0002667;
XX
DE Pan troglodytes miR-30a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751894; MIR30A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0002371"
FT /product="ptr-miR-30a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000088"
FT miRNA 47..68
FT /accession="MIMAT0002372"
FT /product="ptr-miR-30a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000088"
XX
SQ Sequence 71 BP; 16 A; 17 C; 21 G; 0 T; 17 other;
gcgacuguaa acauccucga cuggaagcug ugaagccaca gaugggcuuu cagucggaug 60
uuugcagcug c 71
//
ID ggo-mir-30a standard; RNA; GGO; 71 BP.
XX
AC MI0002668;
XX
DE Gorilla gorilla miR-30a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0002373"
FT /product="ggo-miR-30a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000088"
FT miRNA 47..68
FT /accession="MIMAT0002374"
FT /product="ggo-miR-30a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000088"
XX
SQ Sequence 71 BP; 16 A; 17 C; 21 G; 0 T; 17 other;
gcgacuguaa acauccucga cuggaagcug ugaagccaca gaugggcuuu cagucggaug 60
uuugcagcug c 71
//
ID ppy-mir-30a standard; RNA; PPY; 71 BP.
XX
AC MI0002669;
XX
DE Pongo pygmaeus miR-30a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0002375"
FT /product="ppy-miR-30a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000088"
FT miRNA 47..68
FT /accession="MIMAT0002376"
FT /product="ppy-miR-30a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000088"
XX
SQ Sequence 71 BP; 16 A; 17 C; 21 G; 0 T; 17 other;
gcgacuguaa acauccucga cuggaagcug ugaagccaca gaugggcuuu cagucggaug 60
uuugcagcug c 71
//
ID ppa-mir-30a standard; RNA; PPA; 71 BP.
XX
AC MI0002670;
XX
DE Pan paniscus miR-30a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0002377"
FT /product="ppa-miR-30a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000088"
FT miRNA 47..68
FT /accession="MIMAT0002378"
FT /product="ppa-miR-30a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000088"
XX
SQ Sequence 71 BP; 16 A; 17 C; 21 G; 0 T; 17 other;
gcgacuguaa acauccucga cuggaagcug ugaagccaca gaugggcuuu cagucggaug 60
uuugcagcug c 71
//
ID mml-mir-31 standard; RNA; MML; 71 BP.
XX
AC MI0002671;
XX
DE Macaca mulatta miR-31 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315488; MIR31.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0002379"
FT /product="mml-miR-31-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000089"
FT miRNA 45..66
FT /accession="MIMAT0026577"
FT /product="mml-miR-31-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 71 BP; 18 A; 16 C; 20 G; 0 T; 17 other;
ggagaggagg caagaugcug gcauagcugu ugaacuggga accugcuaug ccaacauauu 60
gccaucuuuc c 71
//
ID ptr-mir-31 standard; RNA; PTR; 71 BP.
XX
AC MI0002672;
XX
DE Pan troglodytes miR-31 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751895; MIR31.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0002380"
FT /product="ptr-miR-31"
FT /evidence=not_experimental
FT /similarity="MI0000089"
XX
SQ Sequence 71 BP; 18 A; 16 C; 20 G; 0 T; 17 other;
ggagaggagg caagaugcug gcauagcugu ugaacuggga accugcuaug ccaacauauu 60
gccaucuuuc c 71
//
ID ggo-mir-31 standard; RNA; GGO; 71 BP.
XX
AC MI0002673;
XX
DE Gorilla gorilla miR-31 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0002381"
FT /product="ggo-miR-31"
FT /evidence=not_experimental
FT /similarity="MI0000089"
XX
SQ Sequence 71 BP; 18 A; 16 C; 20 G; 0 T; 17 other;
ggagaggagg caagaugcug gcauagcugu ugaacuggga accugcuaug ccaacauauu 60
gccaucuuuc c 71
//
ID ppy-mir-31 standard; RNA; PPY; 71 BP.
XX
AC MI0002674;
XX
DE Pongo pygmaeus miR-31 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0002382"
FT /product="ppy-miR-31"
FT /evidence=not_experimental
FT /similarity="MI0000089"
XX
SQ Sequence 71 BP; 18 A; 16 C; 20 G; 0 T; 17 other;
ggagaggagg caagaugcug gcauagcugu ugaacuggga accugcuaug ccaacauauu 60
gccaucuuuc c 71
//
ID mne-mir-31 standard; RNA; MNE; 71 BP.
XX
AC MI0002675;
XX
DE Macaca nemestrina miR-31 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0002383"
FT /product="mne-miR-31"
FT /evidence=not_experimental
FT /similarity="MI0000089"
XX
SQ Sequence 71 BP; 18 A; 16 C; 20 G; 0 T; 17 other;
ggagaggagg caagaugcug gcauagcugu ugaacuggga accugcuaug ccaacauauu 60
gccaucuuuc c 71
//
ID ppa-mir-31 standard; RNA; PPA; 71 BP.
XX
AC MI0002676;
XX
DE Pan paniscus miR-31 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..29
FT /accession="MIMAT0002384"
FT /product="ppa-miR-31"
FT /evidence=not_experimental
FT /similarity="MI0000089"
XX
SQ Sequence 71 BP; 18 A; 16 C; 20 G; 0 T; 17 other;
ggagaggagg caagaugcug gcauagcugu ugaacuggga accugcuaug ccaacauauu 60
gccaucuuuc c 71
//
ID mml-mir-32 standard; RNA; MML; 70 BP.
XX
AC MI0002677;
XX
DE Macaca mulatta miR-32 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315131; MIR32.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0002385"
FT /product="mml-miR-32-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000090"
FT miRNA 48..67
FT /accession="MIMAT0026578"
FT /product="mml-miR-32-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 70 BP; 17 A; 11 C; 16 G; 0 T; 26 other;
ggagauauug cacauuacua aguugcaugu ugucacggcc ucaaugcaau uuagugugug 60
ugauauuuuc 70
//
ID ptr-mir-32 standard; RNA; PTR; 70 BP.
XX
AC MI0002678;
XX
DE Pan troglodytes miR-32 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751896; MIR32.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0002386"
FT /product="ptr-miR-32"
FT /evidence=not_experimental
FT /similarity="MI0000090"
XX
SQ Sequence 70 BP; 17 A; 11 C; 16 G; 0 T; 26 other;
ggagauauug cacauuacua aguugcaugu ugucacggcc ucaaugcaau uuagugugug 60
ugauauuuuc 70
//
ID ggo-mir-32 standard; RNA; GGO; 70 BP.
XX
AC MI0002679;
XX
DE Gorilla gorilla miR-32 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0002387"
FT /product="ggo-miR-32"
FT /evidence=not_experimental
FT /similarity="MI0000090"
XX
SQ Sequence 70 BP; 17 A; 11 C; 16 G; 0 T; 26 other;
ggagauauug cacauuacua aguugcaugu ugucacggcc ucaaugcaau uuagugugug 60
ugauauuuuc 70
//
ID ppy-mir-32 standard; RNA; PPY; 70 BP.
XX
AC MI0002680;
XX
DE Pongo pygmaeus miR-32 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0002388"
FT /product="ppy-miR-32"
FT /evidence=not_experimental
FT /similarity="MI0000090"
XX
SQ Sequence 70 BP; 17 A; 11 C; 16 G; 0 T; 26 other;
ggagauauug cacauuacua aguugcaugu ugucacggcc ucaaugcaau uuagugugug 60
ugauauuuuc 70
//
ID sla-mir-32 standard; RNA; SLA; 70 BP.
XX
AC MI0002681;
XX
DE Saguinus labiatus miR-32 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0002389"
FT /product="sla-miR-32"
FT /evidence=not_experimental
FT /similarity="MI0000090"
XX
SQ Sequence 70 BP; 17 A; 11 C; 16 G; 0 T; 26 other;
ggagauauug cacauuacua aguugcaugu ugucacggcc ucaaugcaau uuagugugug 60
ugauauuuuc 70
//
ID mne-mir-32 standard; RNA; MNE; 70 BP.
XX
AC MI0002682;
XX
DE Macaca nemestrina miR-32 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0002390"
FT /product="mne-miR-32"
FT /evidence=not_experimental
FT /similarity="MI0000090"
XX
SQ Sequence 70 BP; 17 A; 11 C; 16 G; 0 T; 26 other;
ggagauauug cacauuacua aguugcaugu ugucacggcc ucaaugcaau uuagugugug 60
ugauauuuuc 70
//
ID ppa-mir-32 standard; RNA; PPA; 70 BP.
XX
AC MI0002683;
XX
DE Pan paniscus miR-32 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..26
FT /accession="MIMAT0002391"
FT /product="ppa-miR-32"
FT /evidence=not_experimental
FT /similarity="MI0000090"
XX
SQ Sequence 70 BP; 17 A; 11 C; 16 G; 0 T; 26 other;
ggagauauug cacauuacua aguugcaugu ugucacggcc ucaaugcaau uuagugugug 60
ugauauuuuc 70
//
ID mml-mir-33a standard; RNA; MML; 69 BP.
XX
AC MI0002684;
XX
DE Macaca mulatta miR-33a stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315132; MIR33A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..24
FT /accession="MIMAT0002392"
FT /product="mml-miR-33a"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT /similarity="MI0000091"
XX
SQ Sequence 69 BP; 13 A; 15 C; 18 G; 0 T; 23 other;
cugcggugca uuguaguugc auugcauguu cuggugguac ccaugcaaug uuuccacagu 60
gcauuacag 69
//
ID ptr-mir-33a standard; RNA; PTR; 69 BP.
XX
AC MI0002685;
XX
DE Pan troglodytes miR-33a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751897; MIR33A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..24
FT /accession="MIMAT0002393"
FT /product="ptr-miR-33a"
FT /evidence=not_experimental
FT /similarity="MI0000091"
XX
SQ Sequence 69 BP; 13 A; 15 C; 18 G; 0 T; 23 other;
cuguggugca uuguaguugc auugcauguu cuggugguac ccaugcaaug uuuccacagu 60
gcaucacag 69
//
ID ggo-mir-33 standard; RNA; GGO; 69 BP.
XX
AC MI0002686;
XX
DE Gorilla gorilla miR-33 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..24
FT /accession="MIMAT0002394"
FT /product="ggo-miR-33"
FT /evidence=not_experimental
FT /similarity="MI0000091"
XX
SQ Sequence 69 BP; 13 A; 15 C; 18 G; 0 T; 23 other;
cuguggugca uuguaguugc auugcauguu cuggugguac ccaugcaaug uuuccacagu 60
gcaucacag 69
//
ID ppy-mir-33a standard; RNA; PPY; 69 BP.
XX
AC MI0002687;
XX
DE Pongo pygmaeus miR-33 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..24
FT /accession="MIMAT0002395"
FT /product="ppy-miR-33a"
FT /evidence=not_experimental
FT /similarity="MI0000091"
XX
SQ Sequence 69 BP; 13 A; 16 C; 18 G; 0 T; 22 other;
cugcggugca uuguaguugc auugcauguu cuggugguac ccaugcaaug uuuccacagu 60
gcaucacag 69
//
ID mne-mir-33 standard; RNA; MNE; 69 BP.
XX
AC MI0002688;
XX
DE Macaca nemestrina miR-33 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..24
FT /accession="MIMAT0002396"
FT /product="mne-miR-33"
FT /evidence=not_experimental
FT /similarity="MI0000091"
XX
SQ Sequence 69 BP; 13 A; 15 C; 18 G; 0 T; 23 other;
cugcggugca uuguaguugc auugcauguu cuggugguac ccaugcaaug uuuccacagu 60
gcauuacag 69
//
ID ppa-mir-33 standard; RNA; PPA; 69 BP.
XX
AC MI0002689;
XX
DE Pan paniscus miR-33 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..24
FT /accession="MIMAT0002397"
FT /product="ppa-miR-33"
FT /evidence=not_experimental
FT /similarity="MI0000091"
XX
SQ Sequence 69 BP; 13 A; 15 C; 18 G; 0 T; 23 other;
cuguggugca uuguaguugc auugcauguu cuggugguac ccaugcaaug uuuccacagu 60
gcaucacag 69
//
ID ptr-mir-95 standard; RNA; PTR; 81 BP.
XX
AC MI0002690;
XX
DE Pan troglodytes miR-95 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751898; MIR95.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..70
FT /accession="MIMAT0002398"
FT /product="ptr-miR-95"
FT /evidence=not_experimental
FT /similarity="MI0000097"
XX
SQ Sequence 81 BP; 24 A; 16 C; 17 G; 0 T; 24 other;
aacacagugg gcacucaaua aaugucuguu gaauugaaau gcguuacauu caacggguau 60
uuauugagca cccacucugu g 81
//
ID ggo-mir-95 standard; RNA; GGO; 81 BP.
XX
AC MI0002691;
XX
DE Gorilla gorilla miR-95 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..70
FT /accession="MIMAT0002399"
FT /product="ggo-miR-95"
FT /evidence=not_experimental
FT /similarity="MI0000097"
XX
SQ Sequence 81 BP; 24 A; 16 C; 17 G; 0 T; 24 other;
aacacagugg gcacucaaua aaugucuguu gaauugaaau gcguuacauu caacggguau 60
uuauugagca cccacucugu g 81
//
ID ppy-mir-95 standard; RNA; PPY; 81 BP.
XX
AC MI0002692;
XX
DE Pongo pygmaeus miR-95 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..70
FT /accession="MIMAT0002400"
FT /product="ppy-miR-95"
FT /evidence=not_experimental
FT /similarity="MI0000097"
XX
SQ Sequence 81 BP; 24 A; 16 C; 17 G; 0 T; 24 other;
aacacagugg gcacucaaua aaugucuguu gaauugaaau gcguuacauu caacggguau 60
uuauugagca cccacucugu g 81
//
ID sla-mir-95 standard; RNA; SLA; 81 BP.
XX
AC MI0002693;
XX
DE Saguinus labiatus miR-95 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..70
FT /accession="MIMAT0002401"
FT /product="sla-miR-95"
FT /evidence=not_experimental
FT /similarity="MI0000097"
XX
SQ Sequence 81 BP; 24 A; 16 C; 17 G; 0 T; 24 other;
aacacagugg gcacucaaua aaugucuguu gaauugaaau gcguuacauu caacggguau 60
uuauugagca cccacucugu g 81
//
ID lla-mir-95 standard; RNA; LLA; 81 BP.
XX
AC MI0002694;
XX
DE Lagothrix lagotricha miR-95 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..70
FT /accession="MIMAT0002402"
FT /product="lla-miR-95"
FT /evidence=not_experimental
FT /similarity="MI0000097"
XX
SQ Sequence 81 BP; 24 A; 16 C; 17 G; 0 T; 24 other;
aacacagugg gcacucaaua aaugucuguu gaauugaaau gcguuacauu caacggguau 60
uuauugagca cccacucugu g 81
//
ID ppa-mir-95 standard; RNA; PPA; 81 BP.
XX
AC MI0002695;
XX
DE Pan paniscus miR-95 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..70
FT /accession="MIMAT0002403"
FT /product="ppa-miR-95"
FT /evidence=not_experimental
FT /similarity="MI0000097"
XX
SQ Sequence 81 BP; 25 A; 16 C; 16 G; 0 T; 24 other;
aacacagugg gcacucaaua aaugucuguu gaauugaaau gcauuacauu caacggguau 60
uuauugagca cccacucugu g 81
//
ID mml-mir-98 standard; RNA; MML; 80 BP.
XX
AC MI0002696;
XX
DE Macaca mulatta miR-98 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315382; MIR98.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..23
FT /accession="MIMAT0002404"
FT /product="mml-miR-98"
FT /evidence=not_experimental
FT /similarity="MI0000100"
XX
SQ Sequence 80 BP; 23 A; 11 C; 20 G; 0 T; 26 other;
gugagguagu aaguuguauu guuguggggu agggauauua ggccccaauu agaagauaac 60
uauacaacuu acuacuuucc 80
//
ID ptr-mir-98 standard; RNA; PTR; 119 BP.
XX
AC MI0002697;
XX
DE Pan troglodytes miR-98 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751899; MIR98.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0002405"
FT /product="ptr-miR-98"
FT /evidence=not_experimental
FT /similarity="MI0000100"
XX
SQ Sequence 119 BP; 30 A; 19 C; 32 G; 0 T; 38 other;
aggauucugc ucaugccagg gugagguagu aaguuguauu guuguggggu agggauauua 60
ggccccaauu agaagauaac uauacaacuu acuacuuucc cuggugugug gcauauuca 119
//
ID ggo-mir-98 standard; RNA; GGO; 80 BP.
XX
AC MI0002698;
XX
DE Gorilla gorilla miR-98 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..23
FT /accession="MIMAT0002406"
FT /product="ggo-miR-98"
FT /evidence=not_experimental
FT /similarity="MI0000100"
XX
SQ Sequence 80 BP; 23 A; 11 C; 20 G; 0 T; 26 other;
gugagguagu aaguuguauu guuguggggu agggauauua ggccccaauu agaagauaac 60
uauacaacuu acuacuuucc 80
//
ID ppy-mir-98 standard; RNA; PPY; 80 BP.
XX
AC MI0002699;
XX
DE Pongo pygmaeus miR-98 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..23
FT /accession="MIMAT0002407"
FT /product="ppy-miR-98"
FT /evidence=not_experimental
FT /similarity="MI0000100"
XX
SQ Sequence 80 BP; 23 A; 11 C; 20 G; 0 T; 26 other;
gugagguagu aaguuguauu guuguggggu agggauauua ggccccaauu agaagauaac 60
uauacaacuu acuacuuucc 80
//
ID age-mir-98 standard; RNA; AGE; 80 BP.
XX
AC MI0002700;
XX
DE Ateles geoffroyi miR-98 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..23
FT /accession="MIMAT0002408"
FT /product="age-miR-98"
FT /evidence=not_experimental
FT /similarity="MI0000100"
XX
SQ Sequence 80 BP; 23 A; 11 C; 20 G; 0 T; 26 other;
gugagguagu aaguuguauu guuguggggu agggauauua ggccccaauu agaagauaac 60
uauacaacuu acuacuuucc 80
//
ID ppa-mir-98 standard; RNA; PPA; 80 BP.
XX
AC MI0002701;
XX
DE Pan paniscus miR-98 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 2..23
FT /accession="MIMAT0002409"
FT /product="ppa-miR-98"
FT /evidence=not_experimental
FT /similarity="MI0000100"
XX
SQ Sequence 80 BP; 23 A; 11 C; 20 G; 0 T; 26 other;
gugagguagu aaguuguauu guuguggggu agggauauua ggccccaauu agaagauaac 60
uauacaacuu acuacuuucc 80
//
ID mml-mir-99a standard; RNA; MML; 81 BP.
XX
AC MI0002702;
XX
DE Macaca mulatta miR-99a stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315133; MIR99A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0002410"
FT /product="mml-miR-99a-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000101"
FT miRNA 51..71
FT /accession="MIMAT0026579"
FT /product="mml-miR-99a-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 81 BP; 16 A; 20 C; 23 G; 0 T; 22 other;
cccauuggca uaaacccgua gauccgaucu uguggugaag uggaccgcac aagcucgcuu 60
cuaugggucu gugucagugu g 81
//
ID ptr-mir-99a standard; RNA; PTR; 81 BP.
XX
AC MI0002703;
XX
DE Pan troglodytes miR-99a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751900; MIR99A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0002411"
FT /product="ptr-miR-99a"
FT /evidence=not_experimental
FT /similarity="MI0000101"
XX
SQ Sequence 81 BP; 16 A; 20 C; 23 G; 0 T; 22 other;
cccauuggca uaaacccgua gauccgaucu uguggugaag uggaccgcac aagcucgcuu 60
cuaugggucu gugucagugu g 81
//
ID ggo-mir-99a standard; RNA; GGO; 81 BP.
XX
AC MI0002704;
XX
DE Gorilla gorilla miR-99a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0002412"
FT /product="ggo-miR-99a"
FT /evidence=not_experimental
FT /similarity="MI0000101"
XX
SQ Sequence 81 BP; 16 A; 20 C; 23 G; 0 T; 22 other;
cccauuggca uaaacccgua gauccgaucu uguggugaag uggaccgcac aagcucgcuu 60
cuaugggucu gugucagugu g 81
//
ID ppy-mir-99a standard; RNA; PPY; 81 BP.
XX
AC MI0002705;
XX
DE Pongo pygmaeus miR-99a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0002413"
FT /product="ppy-miR-99a"
FT /evidence=not_experimental
FT /similarity="MI0000101"
XX
SQ Sequence 81 BP; 17 A; 20 C; 22 G; 0 T; 22 other;
cccauuggca uaaacccgua gauccgaucu ugugguaaag uggaccgcac aagcucgcuu 60
cuaugggucu gugucagugu g 81
//
ID lla-mir-99a standard; RNA; LLA; 81 BP.
XX
AC MI0002706;
XX
DE Lagothrix lagotricha miR-99a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0002414"
FT /product="lla-miR-99a"
FT /evidence=not_experimental
FT /similarity="MI0000101"
XX
SQ Sequence 81 BP; 16 A; 20 C; 23 G; 0 T; 22 other;
cccauuggca uaaacccgua gauccgaucu uguggugaag uggaccgcac aagcucgcuu 60
cuaugggucu gugucagugu g 81
//
ID mne-mir-99a standard; RNA; MNE; 81 BP.
XX
AC MI0002707;
XX
DE Macaca nemestrina miR-99a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0002415"
FT /product="mne-miR-99a"
FT /evidence=not_experimental
FT /similarity="MI0000101"
XX
SQ Sequence 81 BP; 16 A; 20 C; 23 G; 0 T; 22 other;
cccauuggca uaaacccgua gauccgaucu uguggugaag uggaccgcac aagcucgcuu 60
cuaugggucu gugucagugu g 81
//
ID ppa-mir-99a standard; RNA; PPA; 81 BP.
XX
AC MI0002708;
XX
DE Pan paniscus miR-99a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0002416"
FT /product="ppa-miR-99a"
FT /evidence=not_experimental
FT /similarity="MI0000101"
XX
SQ Sequence 81 BP; 16 A; 20 C; 23 G; 0 T; 22 other;
cccauuggca uaaacccgua gauccgaucu uguggugaag uggaccgcac aagcucgcuu 60
cuaugggucu gugucagugu g 81
//
ID ggo-mir-100 standard; RNA; GGO; 80 BP.
XX
AC MI0002709;
XX
DE Gorilla gorilla miR-100 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0002417"
FT /product="ggo-miR-100"
FT /evidence=not_experimental
FT /similarity="MI0000102"
XX
SQ Sequence 80 BP; 18 A; 18 C; 19 G; 0 T; 25 other;
ccuguugcca caaacccgua gauccgaacu ugugguauua guccgcacaa gcuuguaucu 60
auagguaugu gucuguuagg 80
//
ID age-mir-100 standard; RNA; AGE; 80 BP.
XX
AC MI0002710;
XX
DE Ateles geoffroyi miR-100 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0002418"
FT /product="age-miR-100"
FT /evidence=not_experimental
FT /similarity="MI0000102"
XX
SQ Sequence 80 BP; 16 A; 17 C; 21 G; 0 T; 26 other;
ccuguugcca caaacccgua gauccgaacu ugugguguua gucugcacaa gcuugugucu 60
auagguaugu gucuguuagg 80
//
ID ppa-mir-100 standard; RNA; PPA; 80 BP.
XX
AC MI0002711;
XX
DE Pan paniscus miR-100 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0002419"
FT /product="ppa-miR-100"
FT /evidence=not_experimental
FT /similarity="MI0000102"
XX
SQ Sequence 80 BP; 18 A; 18 C; 19 G; 0 T; 25 other;
ccuguugcca caaacccgua gauccgaacu ugugguauua guccgcacaa gcuuguaucu 60
auagguaugu gucuguuagg 80
//
ID ppy-mir-100 standard; RNA; PPY; 80 BP.
XX
AC MI0002712;
XX
DE Pongo pygmaeus miR-100 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0002420"
FT /product="ppy-miR-100"
FT /evidence=not_experimental
FT /similarity="MI0000102"
XX
SQ Sequence 80 BP; 18 A; 19 C; 19 G; 0 T; 24 other;
ccuguugcca caaacccgua gauccgaacu ugugguauua guccgcacaa gcuuguaucu 60
acagguaugu gucuguuagg 80
//
ID ptr-mir-100 standard; RNA; PTR; 80 BP.
XX
AC MI0002713;
XX
DE Pan troglodytes miR-100 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751901; MIR100.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0002421"
FT /product="ptr-miR-100"
FT /evidence=not_experimental
FT /similarity="MI0000102"
XX
SQ Sequence 80 BP; 18 A; 18 C; 19 G; 0 T; 25 other;
ccuguugcca caaacccgua gauccgaacu ugugguauua guccgcacaa gcuuguaucu 60
auagguaugu gucuguuagg 80
//
ID mml-mir-100 standard; RNA; MML; 80 BP.
XX
AC MI0002714;
XX
DE Macaca mulatta miR-100 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315489; MIR100.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0002422"
FT /product="mml-miR-100-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000102"
FT miRNA 49..69
FT /accession="MIMAT0026580"
FT /product="mml-miR-100-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 80 BP; 17 A; 18 C; 19 G; 0 T; 26 other;
ccuguugcca caaacccgua gauccgaacu ugugguauua guccgcacaa gcuugugucu 60
auagguaugu gucuuuuagg 80
//
ID sla-mir-100 standard; RNA; SLA; 80 BP.
XX
AC MI0002715;
XX
DE Saguinus labiatus miR-100 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0002423"
FT /product="sla-miR-100"
FT /evidence=not_experimental
FT /similarity="MI0000102"
XX
SQ Sequence 80 BP; 17 A; 16 C; 21 G; 0 T; 26 other;
ccuguugcca caaacccgua gauccgaacu ugugguguua augugcacaa gcuugugucu 60
auagguaugu gucuguuagg 80
//
ID lla-mir-100 standard; RNA; LLA; 80 BP.
XX
AC MI0002716;
XX
DE Lagothrix lagotricha miR-100 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..34
FT /accession="MIMAT0002424"
FT /product="lla-miR-100"
FT /evidence=not_experimental
FT /similarity="MI0000102"
XX
SQ Sequence 80 BP; 16 A; 17 C; 21 G; 0 T; 26 other;
ccuguugcca caaacccgua gauccgaacu ugugguguua gucugcacaa gcuugugucu 60
auagguaugu gucuguuagg 80
//
ID ggo-mir-101 standard; RNA; GGO; 75 BP.
XX
AC MI0002717;
XX
DE Gorilla gorilla miR-101 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 47..68
FT /accession="MIMAT0002425"
FT /product="ggo-miR-101"
FT /evidence=not_experimental
FT /similarity="MI0000103"
XX
SQ Sequence 75 BP; 19 A; 16 C; 19 G; 0 T; 21 other;
ugcccuggcu caguuaucac agugcugaug cuguccauuc uaaagguaca guacugugau 60
aacugaagga uggca 75
//
ID sla-mir-101 standard; RNA; SLA; 75 BP.
XX
AC MI0002718;
XX
DE Saguinus labiatus miR-101 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 47..68
FT /accession="MIMAT0002426"
FT /product="sla-miR-101"
FT /evidence=not_experimental
FT /similarity="MI0000103"
XX
SQ Sequence 75 BP; 19 A; 16 C; 19 G; 0 T; 21 other;
ugcccuggcu caguuaucac agugcugaug cuguccauuc uaaagguaca guacugugau 60
aacugaagga uggca 75
//
ID age-mir-101 standard; RNA; AGE; 75 BP.
XX
AC MI0002719;
XX
DE Ateles geoffroyi miR-101 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 47..68
FT /accession="MIMAT0002427"
FT /product="age-miR-101"
FT /evidence=not_experimental
FT /similarity="MI0000103"
XX
SQ Sequence 75 BP; 19 A; 15 C; 19 G; 0 T; 22 other;
ugcccuggcu caguuaucac agugcugaug cugucuauuc uaaagguaca guacugugau 60
aacugaagga uggca 75
//
ID ppa-mir-101 standard; RNA; PPA; 75 BP.
XX
AC MI0002720;
XX
DE Pan paniscus miR-101 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 47..68
FT /accession="MIMAT0002428"
FT /product="ppa-miR-101"
FT /evidence=not_experimental
FT /similarity="MI0000103"
XX
SQ Sequence 75 BP; 19 A; 16 C; 19 G; 0 T; 21 other;
ugcccuggcu caguuaucac agugcugaug cuguccauuc uaaagguaca guacugugau 60
aacugaagga uggca 75
//
ID ptr-mir-101-1 standard; RNA; PTR; 75 BP.
XX
AC MI0002722;
XX
DE Pan troglodytes miR-101-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751902; MIR101-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 47..68
FT /accession="MIMAT0002430"
FT /product="ptr-miR-101"
FT /evidence=not_experimental
FT /similarity="MI0000103"
XX
SQ Sequence 75 BP; 19 A; 16 C; 19 G; 0 T; 21 other;
ugcccuggcu caguuaucac agugcugaug cuguccauuc uaaagguaca guacugugau 60
aacugaagga uggca 75
//
ID mml-mir-101-1 standard; RNA; MML; 75 BP.
XX
AC MI0002723;
XX
DE Macaca mulatta miR-101-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315134; MIR101-1.
XX
FH Key Location/Qualifiers
FH
FT miRNA 10..32
FT /accession="MIMAT0026581"
FT /product="mml-miR-101-1-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 47..68
FT /accession="MIMAT0002431"
FT /product="mml-miR-101-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000103"
XX
SQ Sequence 75 BP; 19 A; 16 C; 19 G; 0 T; 21 other;
ugcccuggcu caguuaucac agugcugaug cuguccauuc uaaagguaca guacugugau 60
aacugaagga uggca 75
//
ID lla-mir-101 standard; RNA; LLA; 75 BP.
XX
AC MI0002724;
XX
DE Lagothrix lagotricha miR-101 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 47..68
FT /accession="MIMAT0002432"
FT /product="lla-miR-101"
FT /evidence=not_experimental
FT /similarity="MI0000103"
XX
SQ Sequence 75 BP; 19 A; 16 C; 19 G; 0 T; 21 other;
ugcccuggcu caguuaucac agugcugaug cuguccauuc uaaagguaca guacugugau 60
aacugaagga uggca 75
//
ID mne-mir-101 standard; RNA; MNE; 75 BP.
XX
AC MI0002725;
XX
DE Macaca nemestrina miR-101 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 47..68
FT /accession="MIMAT0002433"
FT /product="mne-miR-101"
FT /evidence=not_experimental
FT /similarity="MI0000103"
XX
SQ Sequence 75 BP; 19 A; 16 C; 19 G; 0 T; 21 other;
ugcccuggcu caguuaucac agugcugaug cuguccauuc uaaagguaca guacugugau 60
aacugaagga uggca 75
//
ID ppy-mir-29b-1 standard; RNA; PPY; 81 BP.
XX
AC MI0002726;
XX
DE Pongo pygmaeus miR-29b-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..70
FT /accession="MIMAT0002434"
FT /product="ppy-miR-29b"
FT /evidence=not_experimental
FT /similarity="MI0000105"
XX
SQ Sequence 81 BP; 19 A; 10 C; 22 G; 0 T; 30 other;
cuucaggaag cugguuucau auggugguuu agauuuaaau agugauuguc uagcaccauu 60
ugaaaucagu guucuugggg g 81
//
ID ptr-mir-29b-1 standard; RNA; PTR; 81 BP.
XX
AC MI0002727;
XX
DE Pan troglodytes miR-29b-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751903; MIR29B-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..70
FT /accession="MIMAT0002435"
FT /product="ptr-miR-29b"
FT /evidence=not_experimental
FT /similarity="MI0000105"
XX
SQ Sequence 81 BP; 19 A; 10 C; 22 G; 0 T; 30 other;
cuucaggaag cugguuucau auggugguuu agauuuaaau agugauuguc uagcaccauu 60
ugaaaucagu guucuugggg g 81
//
ID ggo-mir-29b-1 standard; RNA; GGO; 81 BP.
XX
AC MI0002728;
XX
DE Gorilla gorilla miR-29b-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..70
FT /accession="MIMAT0002436"
FT /product="ggo-miR-29b"
FT /evidence=not_experimental
FT /similarity="MI0000105"
XX
SQ Sequence 81 BP; 19 A; 10 C; 22 G; 0 T; 30 other;
cuucaggaag cugguuucau auggugguuu agauuuaaau agugauuguc uagcaccauu 60
ugaaaucagu guucuugggg g 81
//
ID lla-mir-29b standard; RNA; LLA; 81 BP.
XX
AC MI0002729;
XX
DE Lagothrix lagotricha miR-29b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..70
FT /accession="MIMAT0002437"
FT /product="lla-miR-29b"
FT /evidence=not_experimental
FT /similarity="MI0000105"
XX
SQ Sequence 81 BP; 19 A; 10 C; 22 G; 0 T; 30 other;
cuucaggaag cugguuucau auggugguuu agauuuaaau agugauuguc uagcaccauu 60
ugaaaucagu guucuugggg g 81
//
ID age-mir-29b standard; RNA; AGE; 81 BP.
XX
AC MI0002730;
XX
DE Ateles geoffroyi miR-29b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..70
FT /accession="MIMAT0002438"
FT /product="age-miR-29b"
FT /evidence=not_experimental
FT /similarity="MI0000105"
XX
SQ Sequence 81 BP; 19 A; 10 C; 22 G; 0 T; 30 other;
cuucaggaag cugguuucau auggugguuu agauuuaaau agugauuguc uagcaccauu 60
ugaaaucagu guucuugggg g 81
//
ID ppa-mir-29b-1 standard; RNA; PPA; 81 BP.
XX
AC MI0002731;
XX
DE Pan paniscus miR-29b-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 51..70
FT /accession="MIMAT0002439"
FT /product="ppa-miR-29b"
FT /evidence=not_experimental
FT /similarity="MI0000105"
XX
SQ Sequence 81 BP; 19 A; 10 C; 22 G; 0 T; 30 other;
cuucaggaag cugguuucau auggugguuu agauuuaaau agugauuguc uagcaccauu 60
ugaaaucagu guucuugggg g 81
//
ID ptr-mir-29b-2 standard; RNA; PTR; 81 BP.
XX
AC MI0002732;
XX
DE Pan troglodytes miR-29b-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751904; MIR29B-2.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..71
FT /accession="MIMAT0002435"
FT /product="ptr-miR-29b"
FT /evidence=not_experimental
FT /similarity="MI0000107"
XX
SQ Sequence 81 BP; 17 A; 14 C; 18 G; 0 T; 32 other;
cuucuggaag cugguuucac augguggcuu agauuuuucc aucuuuguau cuagcaccau 60
uugaaaucag uguuuuagga g 81
//
ID ggo-mir-29b-2 standard; RNA; GGO; 81 BP.
XX
AC MI0002733;
XX
DE Gorilla gorilla miR-29b-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..71
FT /accession="MIMAT0002436"
FT /product="ggo-miR-29b"
FT /evidence=not_experimental
FT /similarity="MI0000107"
XX
SQ Sequence 81 BP; 17 A; 14 C; 18 G; 0 T; 32 other;
cuucuggaag cugguuucac augguggcuu agauuuuucc aucuuuguau cuagcaccau 60
uugaaaucag uguuuuagga g 81
//
ID ppy-mir-29b-2 standard; RNA; PPY; 81 BP.
XX
AC MI0002734;
XX
DE Pongo pygmaeus miR-29b-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..71
FT /accession="MIMAT0002434"
FT /product="ppy-miR-29b"
FT /evidence=not_experimental
FT /similarity="MI0000107"
XX
SQ Sequence 81 BP; 17 A; 14 C; 18 G; 0 T; 32 other;
cuucuggaag cugguuucac augguggcuu agauuuuucc aucuuuguau cuagcaccau 60
uugaaaucag uguuuuagga g 81
//
ID sla-mir-29b standard; RNA; SLA; 81 BP.
XX
AC MI0002735;
XX
DE Saguinus labiatus miR-29b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..71
FT /accession="MIMAT0002440"
FT /product="sla-miR-29b"
FT /evidence=not_experimental
FT /similarity="MI0000107"
XX
SQ Sequence 81 BP; 17 A; 14 C; 18 G; 0 T; 32 other;
cuucuggaag cugguuucac augguggcuu agauuuuucc aucuuuguau cuagcaccau 60
uugaaaucag uguuuuagga g 81
//
ID mne-mir-29b standard; RNA; MNE; 81 BP.
XX
AC MI0002736;
XX
DE Macaca nemestrina miR-29b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..71
FT /accession="MIMAT0002441"
FT /product="mne-miR-29b"
FT /evidence=not_experimental
FT /similarity="MI0000107"
XX
SQ Sequence 81 BP; 17 A; 14 C; 18 G; 0 T; 32 other;
cuucuggaag cugguuucac augguggcuu agauuuuucc aucuuuguau cuagcaccau 60
uugaaaucag uguuuuagga g 81
//
ID ppa-mir-29b-2 standard; RNA; PPA; 81 BP.
XX
AC MI0002737;
XX
DE Pan paniscus miR-29b-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 52..71
FT /accession="MIMAT0002439"
FT /product="ppa-miR-29b"
FT /evidence=not_experimental
FT /similarity="MI0000107"
XX
SQ Sequence 81 BP; 17 A; 14 C; 18 G; 0 T; 32 other;
cuucuggaag cugguuucac augguggcuu agauuuuucc aucuuuguau cuagcaccau 60
uugaaaucag uguuuuagga g 81
//
ID age-mir-103 standard; RNA; AGE; 78 BP.
XX
AC MI0002738;
XX
DE Ateles geoffroyi miR-103 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 48..70
FT /accession="MIMAT0002442"
FT /product="age-miR-103"
FT /evidence=not_experimental
FT /similarity="MI0000109"
XX
SQ Sequence 78 BP; 16 A; 18 C; 20 G; 0 T; 24 other;
uacugcccuc ggcuucuuua cagugcugcc uuguugcaua uggaucaagc agcauuguac 60
agggcuauga aggcauug 78
//
ID ggo-mir-103 standard; RNA; GGO; 78 BP.
XX
AC MI0002739;
XX
DE Gorilla gorilla miR-103 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 48..70
FT /accession="MIMAT0002443"
FT /product="ggo-miR-103"
FT /evidence=not_experimental
FT /similarity="MI0000109"
XX
SQ Sequence 78 BP; 16 A; 18 C; 20 G; 0 T; 24 other;
uacugcccuc ggcuucuuua cagugcugcc uuguugcaua uggaucaagc agcauuguac 60
agggcuauga aggcauug 78
//
ID ppa-mir-103 standard; RNA; PPA; 78 BP.
XX
AC MI0002740;
XX
DE Pan paniscus miR-103 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 48..70
FT /accession="MIMAT0002444"
FT /product="ppa-miR-103"
FT /evidence=not_experimental
FT /similarity="MI0000109"
XX
SQ Sequence 78 BP; 16 A; 18 C; 20 G; 0 T; 24 other;
uacugcccuc ggcuucuuua cagugcugcc uuguugcaua uggaucaagc agcauuguac 60
agggcuauga aggcauug 78
//
ID ppy-mir-103-1 standard; RNA; PPY; 78 BP.
XX
AC MI0002741;
XX
DE Pongo pygmaeus miR-103 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 48..70
FT /accession="MIMAT0002445"
FT /product="ppy-miR-103"
FT /evidence=not_experimental
FT /similarity="MI0000109"
XX
SQ Sequence 78 BP; 16 A; 18 C; 20 G; 0 T; 24 other;
uacugcccuc ggcuucuuua cagugcugcc uuguugcaua uggaucaagc agcauuguac 60
agggcuauga aggcauug 78
//
ID ptr-mir-103-1 standard; RNA; PTR; 78 BP.
XX
AC MI0002742;
XX
DE Pan troglodytes miR-103-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751905; MIR103-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 48..70
FT /accession="MIMAT0002446"
FT /product="ptr-miR-103"
FT /evidence=not_experimental
FT /similarity="MI0000109"
XX
SQ Sequence 78 BP; 16 A; 18 C; 20 G; 0 T; 24 other;
uacugcccuc ggcuucuuua cagugcugcc uuguugcaua uggaucaagc agcauuguac 60
agggcuauga aggcauug 78
//
ID mml-mir-103-1 standard; RNA; MML; 78 BP.
XX
AC MI0002743;
XX
DE Macaca mulatta miR-103-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315593; MIR103-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 9..33
FT /accession="MIMAT0026582"
FT /product="mml-miR-103-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 48..70
FT /accession="MIMAT0002447"
FT /product="mml-miR-103-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000109"
XX
SQ Sequence 78 BP; 16 A; 18 C; 20 G; 0 T; 24 other;
uacugcccuc ggcuucuuua cagugcugcc uuguugcaua uggaucaagc agcauuguac 60
agggcuauga aggcauug 78
//
ID lla-mir-103 standard; RNA; LLA; 78 BP.
XX
AC MI0002744;
XX
DE Lagothrix lagotricha miR-103 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 48..70
FT /accession="MIMAT0002448"
FT /product="lla-miR-103"
FT /evidence=not_experimental
FT /similarity="MI0000109"
XX
SQ Sequence 78 BP; 16 A; 18 C; 20 G; 0 T; 24 other;
uacugcccuc ggcuucuuua cagugcugcc uuguugcaua uggaucaagc agcauuguac 60
agggcuauga aggcauug 78
//
ID mne-mir-103 standard; RNA; MNE; 78 BP.
XX
AC MI0002745;
XX
DE Macaca nemestrina miR-103 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 48..70
FT /accession="MIMAT0002449"
FT /product="mne-miR-103"
FT /evidence=not_experimental
FT /similarity="MI0000109"
XX
SQ Sequence 78 BP; 16 A; 18 C; 20 G; 0 T; 24 other;
uacugcccuc ggcuucuuua cagugcugcc uuguugcaua uggaucaagc agcauuguac 60
agggcuauga aggcauug 78
//
ID ppy-mir-105-1 standard; RNA; PPY; 81 BP.
XX
AC MI0002746;
XX
DE Pongo pygmaeus miR-105 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0002450"
FT /product="ppy-miR-105"
FT /evidence=not_experimental
FT /similarity="MI0000111"
XX
SQ Sequence 81 BP; 14 A; 19 C; 24 G; 0 T; 24 other;
ugugcaucgu ggucaaaugc ucagacuccu gugguggcug cucaugcacc acggauguuu 60
gagcaugugc uacggugucu a 81
//
ID ggo-mir-105 standard; RNA; GGO; 81 BP.
XX
AC MI0002747;
XX
DE Gorilla gorilla miR-105 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 22453055.
RA Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J;
RT "Annotation of primate miRNAs by high throughput sequencing of small RNA
RT libraries";
RL BMC Genomics. 13:116(2012).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..32
FT /accession="MIMAT0002451"
FT /product="ggo-miR-105"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000111"
XX
SQ Sequence 81 BP; 14 A; 19 C; 24 G; 0 T; 24 other;
ugugcaucgu ggucaaaugc ucagacuccu gugguggcug cucaugcacc acggauguuu 60
gagcaugugc uacggugucu a 81
//
ID ppa-mir-105 standard; RNA; PPA; 81 BP.
XX
AC MI0002748;
XX
DE Pan paniscus miR-105 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..32
FT /accession="MIMAT0002452"
FT /product="ppa-miR-105"
FT /evidence=not_experimental
FT /similarity="MI0000111"
XX
SQ Sequence 81 BP; 14 A; 19 C; 24 G; 0 T; 24 other;
ugugcaucgu ggucaaaugc ucagacuccu gugguggcug cucaugcacc acggauguuu 60
gagcaugugc uacggugucu a 81
//
ID ptr-mir-105 standard; RNA; PTR; 81 BP.
XX
AC MI0002749;
XX
DE Pan troglodytes miR-105 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751906; MIR105.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..32
FT /accession="MIMAT0002453"
FT /product="ptr-miR-105"
FT /evidence=not_experimental
FT /similarity="MI0000111"
XX
SQ Sequence 81 BP; 14 A; 17 C; 24 G; 0 T; 26 other;
ugugcaucgu ggucaaaugc ucagacuccu gugguggcug cuuaugcacc acggauguuu 60
gagcaugugc uauggugucu a 81
//
ID mml-mir-105-1 standard; RNA; MML; 81 BP.
XX
AC MI0002750;
XX
DE Macaca mulatta miR-105-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315135; MIR105-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0002454"
FT /product="mml-miR-105-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000111"
FT miRNA 51..72
FT /accession="MIMAT0026583"
FT /product="mml-miR-105-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 81 BP; 14 A; 19 C; 24 G; 0 T; 24 other;
ugugcaucgu ggucaaaugc ucagacuccu gugguggcug cucaugcacc acggauguuu 60
gagcaugugc uacggugucu a 81
//
ID sla-mir-105 standard; RNA; SLA; 81 BP.
XX
AC MI0002751;
XX
DE Saguinus labiatus miR-105 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..32
FT /accession="MIMAT0002455"
FT /product="sla-miR-105"
FT /evidence=not_experimental
FT /similarity="MI0000111"
XX
SQ Sequence 81 BP; 14 A; 19 C; 24 G; 0 T; 24 other;
ugugcaucgu ggucaaaugc ucagacuccu gugguggcug cucaugcacc acggauguuu 60
gagcaugugc uacggugucu a 81
//
ID lla-mir-105 standard; RNA; LLA; 81 BP.
XX
AC MI0002752;
XX
DE Lagothrix lagotricha miR-105 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..32
FT /accession="MIMAT0002456"
FT /product="lla-miR-105"
FT /evidence=not_experimental
FT /similarity="MI0000111"
XX
SQ Sequence 81 BP; 14 A; 19 C; 24 G; 0 T; 24 other;
ugugcaucgu ggucaaaugc ucagacuccu gugguggcug cucaugcacc acggauguuu 60
gagcaugugc uacggugucu a 81
//
ID mne-mir-105 standard; RNA; MNE; 81 BP.
XX
AC MI0002753;
XX
DE Macaca nemestrina miR-105 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..32
FT /accession="MIMAT0002457"
FT /product="mne-miR-105"
FT /evidence=not_experimental
FT /similarity="MI0000111"
XX
SQ Sequence 81 BP; 14 A; 19 C; 24 G; 0 T; 24 other;
ugugcaucgu ggucaaaugc ucagacuccu gugguggcug cucaugcacc acggauguuu 60
gagcaugugc uacggugucu a 81
//
ID mml-mir-107 standard; RNA; MML; 81 BP.
XX
AC MI0002754;
XX
DE Macaca mulatta miR-107 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315478; MIR107.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 13..35
FT /accession="MIMAT0026584"
FT /product="mml-miR-107-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 50..72
FT /accession="MIMAT0002458"
FT /product="mml-miR-107-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000114"
XX
SQ Sequence 81 BP; 18 A; 19 C; 19 G; 0 T; 25 other;
cucucugcuu ucagcuucuu uacaguguug ccuuguggca uggaguucaa gcagcauugu 60
acagggcuau caaagcacag a 81
//
ID ptr-mir-107 standard; RNA; PTR; 81 BP.
XX
AC MI0002755;
XX
DE Pan troglodytes miR-107 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751907; MIR107.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..72
FT /accession="MIMAT0002459"
FT /product="ptr-miR-107"
FT /evidence=not_experimental
FT /similarity="MI0000114"
XX
SQ Sequence 81 BP; 18 A; 19 C; 19 G; 0 T; 25 other;
cucucugcuu ucagcuucuu uacaguguug ccuuguggca uggaguucaa gcagcauugu 60
acagggcuau caaagcacag a 81
//
ID ggo-mir-107 standard; RNA; GGO; 81 BP.
XX
AC MI0002756;
XX
DE Gorilla gorilla miR-107 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..72
FT /accession="MIMAT0002460"
FT /product="ggo-miR-107"
FT /evidence=not_experimental
FT /similarity="MI0000114"
XX
SQ Sequence 81 BP; 18 A; 19 C; 19 G; 0 T; 25 other;
cucucugcuu ucagcuucuu uacaguguug ccuuguggca uggaguucaa gcagcauugu 60
acagggcuau caaagcacag a 81
//
ID ppy-mir-107 standard; RNA; PPY; 81 BP.
XX
AC MI0002757;
XX
DE Pongo pygmaeus miR-107 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..72
FT /accession="MIMAT0002461"
FT /product="ppy-miR-107"
FT /evidence=not_experimental
FT /similarity="MI0000114"
XX
SQ Sequence 81 BP; 18 A; 19 C; 19 G; 0 T; 25 other;
cucucugcuu ucagcuucuu uacaguguug ccuuguggca uggaguucaa gcagcauugu 60
acagggcuau caaagcacag a 81
//
ID lla-mir-107 standard; RNA; LLA; 81 BP.
XX
AC MI0002758;
XX
DE Lagothrix lagotricha miR-107 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..72
FT /accession="MIMAT0002462"
FT /product="lla-miR-107"
FT /evidence=not_experimental
FT /similarity="MI0000114"
XX
SQ Sequence 81 BP; 18 A; 19 C; 19 G; 0 T; 25 other;
cucucugcuu ucagcuucuu uacaguguug ccuuguggca uggaguucaa gcagcauugu 60
acagggcuau caaagcacag a 81
//
ID mne-mir-107 standard; RNA; MNE; 81 BP.
XX
AC MI0002759;
XX
DE Macaca nemestrina miR-107 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..72
FT /accession="MIMAT0002463"
FT /product="mne-miR-107"
FT /evidence=not_experimental
FT /similarity="MI0000114"
XX
SQ Sequence 81 BP; 18 A; 19 C; 19 G; 0 T; 25 other;
cucucugcuu ucagcuucuu uacaguguug ccuuguggca uggaguucaa gcagcauugu 60
acagggcuau caaagcacag a 81
//
ID ppa-mir-107 standard; RNA; PPA; 81 BP.
XX
AC MI0002760;
XX
DE Pan paniscus miR-107 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 50..72
FT /accession="MIMAT0002464"
FT /product="ppa-miR-107"
FT /evidence=not_experimental
FT /similarity="MI0000114"
XX
SQ Sequence 81 BP; 18 A; 19 C; 19 G; 0 T; 25 other;
cucucugcuu ucagcuucuu uacaguguug ccuuguggca uggaguucaa gcagcauugu 60
acagggcuau caaagcacag a 81
//
ID ggo-mir-124a standard; RNA; GGO; 109 BP.
XX
AC MI0002761;
XX
DE Gorilla gorilla miR-124a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..82
FT /accession="MIMAT0002465"
FT /product="ggo-miR-124a"
FT /evidence=not_experimental
FT /similarity="MI0000444"
XX
SQ Sequence 109 BP; 28 A; 26 C; 29 G; 0 T; 26 other;
aucaagauua gaggcucugc ucuccguguu cacagcggac cuugauuuaa ugucauacaa 60
uuaaggcacg cggugaaugc caagagcgga gccuacggcu gcgcuugaa 109
//
ID age-mir-124a standard; RNA; AGE; 107 BP.
XX
AC MI0002762;
XX
DE Ateles geoffroyi miR-124a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..82
FT /accession="MIMAT0002466"
FT /product="age-miR-124a"
FT /evidence=not_experimental
FT /similarity="MI0000444"
XX
SQ Sequence 107 BP; 27 A; 28 C; 28 G; 0 T; 24 other;
aucaagauca gaggcucugc ccuccguguu cacagcggac cuugauuuaa ugucauacaa 60
uuaaggcacg cggugaaugc caagagcgga gccuacggcu gcacuug 107
//
ID ppa-mir-124a standard; RNA; PPA; 109 BP.
XX
AC MI0002763;
XX
DE Pan paniscus miR-124a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..82
FT /accession="MIMAT0002467"
FT /product="ppa-miR-124a"
FT /evidence=not_experimental
FT /similarity="MI0000444"
XX
SQ Sequence 109 BP; 29 A; 26 C; 28 G; 0 T; 26 other;
aucaagauua gaggcucugc ucuccguguu cacagcggac cuugauuuaa ugucauacaa 60
uuaaggcacg cggugaaugc caagagcgga gccuacggcu gcacuugaa 109
//
ID ppy-mir-124a standard; RNA; PPY; 109 BP.
XX
AC MI0002764;
XX
DE Pongo pygmaeus miR-124a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..82
FT /accession="MIMAT0002468"
FT /product="ppy-miR-124a"
FT /evidence=not_experimental
FT /similarity="MI0000444"
XX
SQ Sequence 109 BP; 29 A; 27 C; 28 G; 0 T; 25 other;
aucaagauua gaggcucugc ccuccguguu cacagcggac cuugauuuaa ugucauacaa 60
uuaaggcacg cggugaaugc caagagcgga gccuacggcu gcacuugaa 109
//
ID ptr-mir-124a standard; RNA; PTR; 109 BP.
XX
AC MI0002765;
XX
DE Pan troglodytes miR-124a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751908; MIR124A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..82
FT /accession="MIMAT0002469"
FT /product="ptr-miR-124a"
FT /evidence=not_experimental
FT /similarity="MI0000444"
XX
SQ Sequence 109 BP; 29 A; 26 C; 28 G; 0 T; 26 other;
aucaagauua gaggcucugc ucuccguguu cacagcggac cuugauuuaa ugucauacaa 60
uuaaggcacg cggugaaugc caagagcgga gccuacggcu gcacuugaa 109
//
ID mml-mir-124a-1 standard; RNA; MML; 109 BP.
XX
AC MI0002766;
XX
DE Macaca mulatta miR-124a-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315490; MIR124A-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..46
FT /accession="MIMAT0026585"
FT /product="mml-miR-124a-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 61..82
FT /accession="MIMAT0002470"
FT /product="mml-miR-124a-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000444"
XX
SQ Sequence 109 BP; 29 A; 28 C; 28 G; 0 T; 24 other;
aucaagauca gaggcucugc ccuccguguu cacagcggac cuugauuuaa ugucauacaa 60
uuaaggcacg cggugaaugc caagagcgga gccuacggcu gcacuugaa 109
//
ID lla-mir-124a standard; RNA; LLA; 107 BP.
XX
AC MI0002767;
XX
DE Lagothrix lagotricha miR-124a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 61..82
FT /accession="MIMAT0002471"
FT /product="lla-miR-124a"
FT /evidence=not_experimental
FT /similarity="MI0000444"
XX
SQ Sequence 107 BP; 28 A; 28 C; 27 G; 0 T; 24 other;
aucaagauca gaggcucugc ccuccguguu cacagcggac cuugauuuaa ugucauacaa 60
uuaaggcacg cggugaaugc caagagcgga gccuacgacu gcacuug 107
//
ID lla-mir-139 standard; RNA; LLA; 68 BP.
XX
AC MI0002768;
XX
DE Lagothrix lagotricha miR-139 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..24
FT /accession="MIMAT0002472"
FT /product="lla-miR-139"
FT /evidence=not_experimental
FT /similarity="MI0000261"
XX
SQ Sequence 68 BP; 11 A; 16 C; 24 G; 0 T; 17 other;
guguauucua cagugcacgu gucuccagug uggcucggag gcuggagacg cggcccuguu 60
ggaguaac 68
//
ID ppa-mir-139 standard; RNA; PPA; 68 BP.
XX
AC MI0002769;
XX
DE Pan paniscus miR-139 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..24
FT /accession="MIMAT0002473"
FT /product="ppa-miR-139"
FT /evidence=not_experimental
FT /similarity="MI0000261"
XX
SQ Sequence 68 BP; 11 A; 16 C; 24 G; 0 T; 17 other;
guguauucua cagugcacgu gucuccagug uggcucggag gcuggagacg cggcccuguu 60
ggaguaac 68
//
ID ptr-mir-147a standard; RNA; PTR; 72 BP.
XX
AC MI0002770;
XX
DE Pan troglodytes miR-147a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751909; MIR147A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 47..66
FT /accession="MIMAT0002474"
FT /product="ptr-miR-147a"
FT /evidence=not_experimental
FT /similarity="MI0000262"
XX
SQ Sequence 72 BP; 25 A; 15 C; 14 G; 0 T; 18 other;
aaucuaaaga aaacauuucu gcacacacac cagacuaugg aagccagugu guggaaaugc 60
uucugcuaga uu 72
//
ID ppy-mir-147a standard; RNA; PPY; 72 BP.
XX
AC MI0002771;
XX
DE Pongo pygmaeus miR-147 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 47..66
FT /accession="MIMAT0002475"
FT /product="ppy-miR-147a"
FT /evidence=not_experimental
FT /similarity="MI0000262"
XX
SQ Sequence 72 BP; 25 A; 15 C; 14 G; 0 T; 18 other;
aaucuaaaga aaacauuucu gcacacacac cagacuaugg aagccagugu guggaaaugc 60
uucugcuaga uu 72
//
ID sla-mir-147 standard; RNA; SLA; 72 BP.
XX
AC MI0002772;
XX
DE Saguinus labiatus miR-147 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 47..66
FT /accession="MIMAT0002476"
FT /product="sla-miR-147"
FT /evidence=not_experimental
FT /similarity="MI0000262"
XX
SQ Sequence 72 BP; 25 A; 17 C; 12 G; 0 T; 18 other;
aaucuaaaga aaacauuucu gcacacacac cagacuauug aagccagugu guggaaaugc 60
uucugccaca uu 72
//
ID mne-mir-147 standard; RNA; MNE; 72 BP.
XX
AC MI0002773;
XX
DE Macaca nemestrina miR-147 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 47..66
FT /accession="MIMAT0002477"
FT /product="mne-miR-147"
FT /evidence=not_experimental
FT /similarity="MI0000262"
XX
SQ Sequence 72 BP; 25 A; 16 C; 12 G; 0 T; 19 other;
aaucuaaaga aaacauuucu gcacacacac cagacuauug aagccagugu guggaaaugc 60
uucugcuaca uu 72
//
ID ppa-mir-147 standard; RNA; PPA; 72 BP.
XX
AC MI0002774;
XX
DE Pan paniscus miR-147 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 47..66
FT /accession="MIMAT0002478"
FT /product="ppa-miR-147"
FT /evidence=not_experimental
FT /similarity="MI0000262"
XX
SQ Sequence 72 BP; 25 A; 15 C; 14 G; 0 T; 18 other;
aaucuaaaga aaacauuucu gcacacacac cagacuaugg aagccagugu guggaaaugc 60
uucugcuaga uu 72
//
ID ggo-mir-7-1 standard; RNA; GGO; 110 BP.
XX
AC MI0002775;
XX
DE Gorilla gorilla miR-7-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0002479"
FT /product="ggo-miR-7"
FT /evidence=not_experimental
FT /similarity="MI0000263"
XX
SQ Sequence 110 BP; 29 A; 21 C; 25 G; 0 T; 35 other;
uuggauguug gccuaguucu guguggaaga cuagugauuu uguuguuuuu agauaacuaa 60
aucgacaaca aaucacaguc ugccauaugg cacaggccau gccucuacag 110
//
ID ppy-mir-7-1 standard; RNA; PPY; 110 BP.
XX
AC MI0002776;
XX
DE Pongo pygmaeus miR-7-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0002480"
FT /product="ppy-miR-7"
FT /evidence=not_experimental
FT /similarity="MI0000263"
XX
SQ Sequence 110 BP; 29 A; 21 C; 25 G; 0 T; 35 other;
uuggauguug gccuaguucu guguggaaga cuagugauuu uguuguuuuu agauaacuaa 60
aucgacaaca aaucacaguc ugccauaugg cacaggccau gccucuacag 110
//
ID sla-mir-7 standard; RNA; SLA; 110 BP.
XX
AC MI0002777;
XX
DE Saguinus labiatus miR-7 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0002481"
FT /product="sla-miR-7"
FT /evidence=not_experimental
FT /similarity="MI0000263"
XX
SQ Sequence 110 BP; 30 A; 20 C; 24 G; 0 T; 36 other;
uuggauauug gccuaguucu guguggaaga cuagugauuu uguuguuuuu agauaauuaa 60
aucgacaaca aaucacaguc ugccauaugg cacaggccau gccucuacag 110
//
ID lla-mir-7 standard; RNA; LLA; 110 BP.
XX
AC MI0002778;
XX
DE Lagothrix lagotricha miR-7 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0002482"
FT /product="lla-miR-7"
FT /evidence=not_experimental
FT /similarity="MI0000263"
XX
SQ Sequence 110 BP; 29 A; 21 C; 25 G; 0 T; 35 other;
uuggauguug gccuaguucu guguggaaga cuagugauuu uguuguuuuu agauaacuaa 60
aucgacaaca aaucacaguc ugccauaugg cacaggccau gccucuacag 110
//
ID mne-mir-7-1 standard; RNA; MNE; 110 BP.
XX
AC MI0002779;
XX
DE Macaca nemestrina miR-7-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0002483"
FT /product="mne-miR-7"
FT /evidence=not_experimental
FT /similarity="MI0000263"
XX
SQ Sequence 110 BP; 29 A; 20 C; 25 G; 0 T; 36 other;
uuggauguug gccuaguucu guguggaaga cuagugauuu uguuguuuuu agauaacuaa 60
auugacaaca aaucacaguc ugccauaugg cacaggccau gccucuacag 110
//
ID ppa-mir-7-1 standard; RNA; PPA; 110 BP.
XX
AC MI0002780;
XX
DE Pan paniscus miR-7-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..44
FT /accession="MIMAT0002484"
FT /product="ppa-miR-7"
FT /evidence=not_experimental
FT /similarity="MI0000263"
XX
SQ Sequence 110 BP; 29 A; 21 C; 25 G; 0 T; 35 other;
uuggauguug gccuaguucu guguggaaga cuagugauuu uguuguuuuu agauaacuaa 60
aucgacaaca aaucacaguc ugccauaugg cacaggccau gccucuacag 110
//
ID ggo-mir-7-2 standard; RNA; GGO; 110 BP.
XX
AC MI0002781;
XX
DE Gorilla gorilla miR-7-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 32..52
FT /accession="MIMAT0002479"
FT /product="ggo-miR-7"
FT /evidence=not_experimental
FT /similarity="MI0000264"
XX
SQ Sequence 110 BP; 25 A; 31 C; 26 G; 0 T; 28 other;
cugcauacag aguggaccgg cuggccccau cuggaagacu agugauuuug uuguugucuu 60
acugcgcuca acaacaaauc ccagucugcc uaauggugcc agccaucgca 110
//
ID ppy-mir-7-2 standard; RNA; PPY; 110 BP.
XX
AC MI0002782;
XX
DE Pongo pygmaeus miR-7-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 32..52
FT /accession="MIMAT0002480"
FT /product="ppy-miR-7"
FT /evidence=not_experimental
FT /similarity="MI0000264"
XX
SQ Sequence 110 BP; 24 A; 30 C; 28 G; 0 T; 28 other;
cuggauacag aguggaccgg cuggccccgu cuggaagacu agugauuuug uuguugucuu 60
acugcgcuca acaacaaauc ccagucugcc uaauggugcc agccaucgca 110
//
ID mne-mir-7-2 standard; RNA; MNE; 110 BP.
XX
AC MI0002783;
XX
DE Macaca nemestrina miR-7-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 32..52
FT /accession="MIMAT0002483"
FT /product="mne-miR-7"
FT /evidence=not_experimental
FT /similarity="MI0000264"
XX
SQ Sequence 110 BP; 24 A; 27 C; 30 G; 0 T; 29 other;
cuggauacag agugaagugg cuggccccgu cuggaagacu agugauuuug uuguugucuu 60
acugcgcuca acaacgaauc ccagucugcc gaauggugcc agccauugca 110
//
ID ppa-mir-7-2 standard; RNA; PPA; 110 BP.
XX
AC MI0002784;
XX
DE Pan paniscus miR-7-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 32..52
FT /accession="MIMAT0002484"
FT /product="ppa-miR-7"
FT /evidence=not_experimental
FT /similarity="MI0000264"
XX
SQ Sequence 110 BP; 27 A; 31 C; 25 G; 0 T; 27 other;
cuggauacag agcggaccgg cuggccccau cuggaagacu agugauuuug uuguugucuu 60
acugcgcuca acaacaaauc ccagucuacc uaauggugcc agccaucaca 110
//
ID ptr-mir-7-3 standard; RNA; PTR; 110 BP.
XX
AC MI0002785;
XX
DE Pan troglodytes miR-7-3 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751910; MIR7-3.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..53
FT /accession="MIMAT0002485"
FT /product="ptr-miR-7"
FT /evidence=not_experimental
FT /similarity="MI0000265"
XX
SQ Sequence 110 BP; 25 A; 24 C; 30 G; 0 T; 31 other;
agauuagagu ggcugugguc uagugcugug uggaagacua gugauuuugu uguucugaug 60
uacuacgaca acaagucaca gccggccuca uagcgcagac ucccuucgac 110
//
ID ggo-mir-7-3 standard; RNA; GGO; 110 BP.
XX
AC MI0002786;
XX
DE Gorilla gorilla miR-7-3 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..51
FT /accession="MIMAT0002479"
FT /product="ggo-miR-7"
FT /evidence=not_experimental
FT /similarity="MI0000265"
XX
SQ Sequence 110 BP; 24 A; 25 C; 31 G; 0 T; 30 other;
agauuggagu ggcugugguc uagugcugug uggaagacua gugauuuugu uguucugaug 60
uacuacgaca acaagucaca gccggccuca cagcgcagac ucccuucgac 110
//
ID ppa-mir-7-3 standard; RNA; PPA; 110 BP.
XX
AC MI0002787;
XX
DE Pan paniscus miR-7-3 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..51
FT /accession="MIMAT0002484"
FT /product="ppa-miR-7"
FT /evidence=not_experimental
FT /similarity="MI0000265"
XX
SQ Sequence 110 BP; 25 A; 24 C; 30 G; 0 T; 31 other;
agauuagagu ggcugugguc uagugcugug uggaagacua gugauuuugu uguucugaug 60
uacuacgaca acaagucaca gccggccuca uagcgcagac ucccuucgac 110
//
ID ggo-mir-10a standard; RNA; GGO; 110 BP.
XX
AC MI0002788;
XX
DE Gorilla gorilla miR-10a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0002486"
FT /product="ggo-miR-10a"
FT /evidence=not_experimental
FT /similarity="MI0000266"
XX
SQ Sequence 110 BP; 28 A; 20 C; 23 G; 0 T; 39 other;
gaucugucug ucuucuguau auacccugua gauccgaauu uguguaagga auuuuguggu 60
cacaaauucg uaucuagggg aauauguagu ugacauaaac acuccgcucu 110
//
ID ppy-mir-10a standard; RNA; PPY; 110 BP.
XX
AC MI0002789;
XX
DE Pongo pygmaeus miR-10a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 22453055.
RA Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J;
RT "Annotation of primate miRNAs by high throughput sequencing of small RNA
RT libraries";
RL BMC Genomics. 13:116(2012).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0002487"
FT /product="ppy-miR-10a"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000266"
XX
SQ Sequence 110 BP; 28 A; 20 C; 24 G; 0 T; 38 other;
gaucugucug ucuucuguau auacccugua gauccgaauu uguguaagga auuuuguggu 60
cacaaauucg uaucuagggg aauauguagu ugacauaaac acuccgcucg 110
//
ID sla-mir-10a standard; RNA; SLA; 110 BP.
XX
AC MI0002790;
XX
DE Saguinus labiatus miR-10a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0002488"
FT /product="sla-miR-10a"
FT /evidence=not_experimental
FT /similarity="MI0000266"
XX
SQ Sequence 110 BP; 29 A; 20 C; 23 G; 0 T; 38 other;
gaucugucug ucuucuguau auacccugua gauccgaauu uguguaagga auuuuguggu 60
cacaaauucg uaucuagggg aauauguagu ugacauaaac acuccgcuca 110
//
ID age-mir-10a standard; RNA; AGE; 110 BP.
XX
AC MI0002791;
XX
DE Ateles geoffroyi miR-10a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0002489"
FT /product="age-miR-10a"
FT /evidence=not_experimental
FT /similarity="MI0000266"
XX
SQ Sequence 110 BP; 29 A; 20 C; 23 G; 0 T; 38 other;
gaucugucug ucuucuguau auacccugua gauccgaauu uguguaagga auuuuguggu 60
cacaaauucg uaucuagggg aauauguagu ugacauaaac acuccgcuca 110
//
ID ppa-mir-10a standard; RNA; PPA; 110 BP.
XX
AC MI0002792;
XX
DE Pan paniscus miR-10a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..44
FT /accession="MIMAT0002490"
FT /product="ppa-miR-10a"
FT /evidence=not_experimental
FT /similarity="MI0000266"
XX
SQ Sequence 110 BP; 28 A; 20 C; 23 G; 0 T; 39 other;
gaucugucug ucuucuguau auacccugua gauccgaauu uguguaagga auuuuguggu 60
cacaaauucg uaucuagggg aauauguagu ugacauaaac acuccgcucu 110
//
ID ggo-mir-10b standard; RNA; GGO; 110 BP.
XX
AC MI0002793;
XX
DE Gorilla gorilla miR-10b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..48
FT /accession="MIMAT0002491"
FT /product="ggo-miR-10b"
FT /evidence=not_experimental
FT /similarity="MI0000267"
XX
SQ Sequence 110 BP; 34 A; 20 C; 22 G; 0 T; 34 other;
ccagacauug uaacguuguc uauauauacc cuguagaacc gaauuugugu gguauccaua 60
uagucacaga uucgauucua ggggaauaua uggucgaugc aaaaacuuca 110
//
ID mne-mir-10b standard; RNA; MNE; 109 BP.
XX
AC MI0002794;
XX
DE Macaca nemestrina miR-10b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..47
FT /accession="MIMAT0002492"
FT /product="mne-miR-10b"
FT /evidence=not_experimental
FT /similarity="MI0000267"
XX
SQ Sequence 109 BP; 33 A; 18 C; 24 G; 0 T; 34 other;
cagagguugu aacguugucu auauauaccc uguagaaccg aauuugugug guauccauau 60
agucacagau ucgauucuag gggaauauau ggucgaugca aaaacuuca 109
//
ID ppa-mir-10b standard; RNA; PPA; 110 BP.
XX
AC MI0002795;
XX
DE Pan paniscus miR-10b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..48
FT /accession="MIMAT0002493"
FT /product="ppa-miR-10b"
FT /evidence=not_experimental
FT /similarity="MI0000267"
XX
SQ Sequence 110 BP; 32 A; 19 C; 25 G; 0 T; 34 other;
ccagagguug uaacguuguc uauauauacc cuguagaacc gaauuugugu gguauccgua 60
uagucacaga uucgauucua ggggaauaua uggucgaugc aaaaacuuca 110
//
ID ggo-mir-34a standard; RNA; GGO; 110 BP.
XX
AC MI0002796;
XX
DE Gorilla gorilla miR-34a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0002494"
FT /product="ggo-miR-34a"
FT /evidence=not_experimental
FT /similarity="MI0000268"
XX
SQ Sequence 110 BP; 23 A; 21 C; 35 G; 0 T; 31 other;
ggccagcugu gaguguuucu uuggcagugu cuuagcuggu uguugugagc aauaguaagg 60
aagcaaucag caaguauacu gcccuagaag ugcugcacgu uguggggccc 110
//
ID age-mir-34a standard; RNA; AGE; 111 BP.
XX
AC MI0002797;
XX
DE Ateles geoffroyi miR-34a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0002495"
FT /product="age-miR-34a"
FT /evidence=not_experimental
FT /similarity="MI0000268"
XX
SQ Sequence 111 BP; 22 A; 21 C; 36 G; 0 T; 32 other;
ggccagcugu gaguguuucu uuggcagugu cuuagcuggu uguugugugc aauagugaag 60
gaagcaauca gcaaguauac ugcccuagaa gugcugcacg uuguggggcc c 111
//
ID ppa-mir-34a standard; RNA; PPA; 110 BP.
XX
AC MI0002798;
XX
DE Pan paniscus miR-34a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0002496"
FT /product="ppa-miR-34a"
FT /evidence=not_experimental
FT /similarity="MI0000268"
XX
SQ Sequence 110 BP; 23 A; 21 C; 35 G; 0 T; 31 other;
ggccagcugu gaguguuucu uuggcagugu cuuagcuggu uguugugagc aauaguaagg 60
aagcaaucag caaguauacu gcccuagaag ugcugcacgu uguggggccc 110
//
ID ppy-mir-34a standard; RNA; PPY; 110 BP.
XX
AC MI0002799;
XX
DE Pongo pygmaeus miR-34a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0002497"
FT /product="ppy-miR-34a"
FT /evidence=not_experimental
FT /similarity="MI0000268"
XX
SQ Sequence 110 BP; 23 A; 21 C; 35 G; 0 T; 31 other;
ggccagcugu gaguguuucu uuggcagugu cuuagcuggu uguugugagc aauaguaagg 60
aagcaaucag caaguauacu gcccuagaag ugcugcacgu uguggggccc 110
//
ID ptr-mir-34a standard; RNA; PTR; 110 BP.
XX
AC MI0002800;
XX
DE Pan troglodytes miR-34a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751911; MIR34A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0002498"
FT /product="ptr-miR-34a"
FT /evidence=not_experimental
FT /similarity="MI0000268"
XX
SQ Sequence 110 BP; 23 A; 21 C; 35 G; 0 T; 31 other;
ggccagcugu gaguguuucu uuggcagugu cuuagcuggu uguugugagc aauaguaagg 60
aagcaaucag caaguauacu gcccuagaag ugcugcacgu uguggggccc 110
//
ID mml-mir-34a standard; RNA; MML; 110 BP.
XX
AC MI0002801;
XX
DE Macaca mulatta miR-34a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315136; MIR34A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0002499"
FT /product="mml-miR-34a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000268"
FT miRNA 65..86
FT /accession="MIMAT0026586"
FT /product="mml-miR-34a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 110 BP; 25 A; 20 C; 33 G; 0 T; 32 other;
ggccagcugu gaguguuucu uuggcagugu cuuagcuggu uguugugagc aauaguaagg 60
aagcaaucag caaguauacu gcccuagaag ugcuacacau uguggggccu 110
//
ID sla-mir-34a standard; RNA; SLA; 111 BP.
XX
AC MI0002802;
XX
DE Saguinus labiatus miR-34a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0002500"
FT /product="sla-miR-34a"
FT /evidence=not_experimental
FT /similarity="MI0000268"
XX
SQ Sequence 111 BP; 22 A; 21 C; 37 G; 0 T; 31 other;
ggccggcugu gaguguuucu uuggcagugu cuuagcuggu uguugugagc aauagugaag 60
gaagcaauca gcaaguauac ugcccuagaa gugcugcacg uuguggggcc c 111
//
ID lla-mir-34a standard; RNA; LLA; 111 BP.
XX
AC MI0002803;
XX
DE Lagothrix lagotricha miR-34a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0002501"
FT /product="lla-miR-34a"
FT /evidence=not_experimental
FT /similarity="MI0000268"
XX
SQ Sequence 111 BP; 23 A; 21 C; 36 G; 0 T; 31 other;
ggccagcugu gaguguuucu uuggcagugu cuuagcuggu uguugugagc aauagugaag 60
gaagcaauca gcaaguauac ugcccuagaa gugcugcacg uuguggggcc c 111
//
ID mne-mir-34a standard; RNA; MNE; 110 BP.
XX
AC MI0002804;
XX
DE Macaca nemestrina miR-34a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 22..43
FT /accession="MIMAT0002502"
FT /product="mne-miR-34a"
FT /evidence=not_experimental
FT /similarity="MI0000268"
XX
SQ Sequence 110 BP; 25 A; 20 C; 33 G; 0 T; 32 other;
ggccagcugu gaguguuucu uuggcagugu cuuagcuggu uguugugagc aauaguaagg 60
aagcaaucag caaguauacu gcccuagaag ugcuacacau uguggggccu 110
//
ID ggo-mir-181a-2 standard; RNA; GGO; 110 BP.
XX
AC MI0002805;
XX
DE Gorilla gorilla miR-181a-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..61
FT /accession="MIMAT0002503"
FT /product="ggo-miR-181a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000269"
XX
SQ Sequence 110 BP; 29 A; 24 C; 31 G; 0 T; 26 other;
agaagggcua ucaggccagg cuucagagga cuccaaggaa cauucaacgc ugucggugag 60
uuugggauuu gaaaaaacca cugaccguug acuguaccuu gggguccuua 110
//
ID ppa-mir-181a-2 standard; RNA; PPA; 110 BP.
XX
AC MI0002806;
XX
DE Pan paniscus miR-181a-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..61
FT /accession="MIMAT0002504"
FT /product="ppa-miR-181a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000269"
XX
SQ Sequence 110 BP; 29 A; 25 C; 30 G; 0 T; 26 other;
agaagggcua ucaggccagc cuucagagga cuccaaggaa cauucaacgc ugucggugag 60
uuugggauuu gaaaaaacca cugaccguug acuguaccuu gggguccuua 110
//
ID ptr-mir-181a-2 standard; RNA; PTR; 110 BP.
XX
AC MI0002807;
XX
DE Pan troglodytes miR-181a-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751912; MIR181A-2.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..61
FT /accession="MIMAT0002505"
FT /product="ptr-miR-181a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000269"
XX
SQ Sequence 110 BP; 29 A; 25 C; 30 G; 0 T; 26 other;
agaagggcua ucaggccagc cuucagagga cuccaaggaa cauucaacgc ugucggugag 60
uuugggauuu gaaaaaacca cugaccguug acuguaccuu gggguccuua 110
//
ID mml-mir-181a-2 standard; RNA; MML; 110 BP.
XX
AC MI0002808;
XX
DE Macaca mulatta miR-181a-2 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315137; MIR181A-2.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..61
FT /accession="MIMAT0002506"
FT /product="mml-miR-181a-5p"
FT /evidence=experimental
FT /experiment="cloned [1]"
FT /similarity="MI0000269"
XX
SQ Sequence 110 BP; 29 A; 26 C; 30 G; 0 T; 25 other;
agaagggcua ucaggccagc cuucagagga cuccaaggaa cauucaacgc ugucggugag 60
uuugggauuu gaaaaaacca cugaccguug acuguaccuc gggguccuua 110
//
ID sla-mir-181a-2 standard; RNA; SLA; 112 BP.
XX
AC MI0002809;
XX
DE Saguinus labiatus miR-181a-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..61
FT /accession="MIMAT0002507"
FT /product="sla-miR-181a"
FT /evidence=not_experimental
FT /similarity="MI0000269"
XX
SQ Sequence 112 BP; 32 A; 27 C; 29 G; 0 T; 24 other;
agaagggcua ccaggccaac cuucagagga cuccaaggaa cauucaacgc ugucggugag 60
uuugggacuu gaaaaaaaac cacugaccgu ugacuguacc uugggguccu ua 112
//
ID mne-mir-181a-2 standard; RNA; MNE; 110 BP.
XX
AC MI0002810;
XX
DE Macaca nemestrina miR-181a-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 39..61
FT /accession="MIMAT0002508"
FT /product="mne-miR-181a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000269"
XX
SQ Sequence 110 BP; 29 A; 28 C; 30 G; 0 T; 23 other;
agaagggcua ucaggccagc cuucagagga cuccaaggaa cauucaacgc ugucggugag 60
uuugggauuu gaaaaaacca cugaccguug acuguaccuc ggggucccca 110
//
ID mml-mir-181c standard; RNA; MML; 110 BP.
XX
AC MI0002811;
XX
DE Macaca mulatta miR-181c stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315138; MIR181C.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..48
FT /accession="MIMAT0002509"
FT /product="mml-miR-181c-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000271"
FT miRNA 67..87
FT /accession="MIMAT0026587"
FT /product="mml-miR-181c-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 110 BP; 24 A; 27 C; 34 G; 0 T; 25 other;
cggagaauuu gccaaggguu ugggggaaca uucaaccugu cggugaguuu gggcagcuca 60
ggcaaaccau cgaccguuga guggacccug agaccuggac uugccauccu 110
//
ID ptr-mir-181c standard; RNA; PTR; 110 BP.
XX
AC MI0002812;
XX
DE Pan troglodytes miR-181c stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751913; MIR181C.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..48
FT /accession="MIMAT0002510"
FT /product="ptr-miR-181c"
FT /evidence=not_experimental
FT /similarity="MI0000271"
XX
SQ Sequence 110 BP; 25 A; 26 C; 34 G; 0 T; 25 other;
cggaaaauuu gccaaggguu ugggggaaca uucaaccugu cggugaguuu gggcagcuca 60
ggcaaaccau cgaccguuga guggacccug aggccuggaa uugccauccu 110
//
ID ggo-mir-181c standard; RNA; GGO; 110 BP.
XX
AC MI0002813;
XX
DE Gorilla gorilla miR-181c stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..48
FT /accession="MIMAT0002511"
FT /product="ggo-miR-181c"
FT /evidence=not_experimental
FT /similarity="MI0000271"
XX
SQ Sequence 110 BP; 25 A; 26 C; 34 G; 0 T; 25 other;
cggaaaauuu gccaaggguu ugggggaaca uucaaccugu cggugaguuu gggcagcuca 60
ggcaaaccau cgaccguuga guggacccug aggccuggaa uugccauccu 110
//
ID ppa-mir-181c standard; RNA; PPA; 110 BP.
XX
AC MI0002814;
XX
DE Pan paniscus miR-181c stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 27..48
FT /accession="MIMAT0002512"
FT /product="ppa-miR-181c"
FT /evidence=not_experimental
FT /similarity="MI0000271"
XX
SQ Sequence 110 BP; 25 A; 26 C; 34 G; 0 T; 25 other;
cggaaaauuu gccaaggguu ugggggaaca uucaaccugu cggugaguuu gggcagcuca 60
ggcaaaccau cgaccguuga guggacccug aggccuggaa uugccauccu 110
//
ID mml-mir-182 standard; RNA; MML; 112 BP.
XX
AC MI0002815;
XX
DE Macaca mulatta miR-182 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315437; MIR182.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0002513"
FT /product="mml-miR-182"
FT /evidence=not_experimental
FT /similarity="MI0000272"
XX
SQ Sequence 112 BP; 21 A; 31 C; 34 G; 0 T; 26 other;
cacagcugcu ugccuccccc uguuuuuggc aaugguagaa cucacacugg ugagguaaug 60
ggauccggug guucuagacu ugccaacuac ggggcgaggg cucagccggc ac 112
//
ID ppy-mir-182 standard; RNA; PPY; 112 BP.
XX
AC MI0002816;
XX
DE Pongo pygmaeus miR-182 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0002514"
FT /product="ppy-miR-182"
FT /evidence=not_experimental
FT /similarity="MI0000272"
XX
SQ Sequence 112 BP; 23 A; 31 C; 32 G; 0 T; 26 other;
cacagcugcu ugccuucccc cguuuuuggc aaugguagaa cucacacugg ugagguaaca 60
ggauccggug guucuagacu ugccaacuau ggggcgagga cucagccggc ac 112
//
ID ggo-mir-187 standard; RNA; GGO; 109 BP.
XX
AC MI0002817;
XX
DE Gorilla gorilla miR-187 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 71..91
FT /accession="MIMAT0002515"
FT /product="ggo-miR-187"
FT /evidence=not_experimental
FT /similarity="MI0000274"
XX
SQ Sequence 109 BP; 19 A; 35 C; 36 G; 0 T; 19 other;
ggucgggcuc accaugacac agugugagac cucgggcuac aacacaggac ccgggcgcug 60
cucugacccc ucgugucuug uguugcagcc ggagggacgc agguccgca 109
//
ID ppy-mir-187 standard; RNA; PPY; 109 BP.
XX
AC MI0002818;
XX
DE Pongo pygmaeus miR-187 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 71..91
FT /accession="MIMAT0002516"
FT /product="ppy-miR-187"
FT /evidence=not_experimental
FT /similarity="MI0000274"
XX
SQ Sequence 109 BP; 19 A; 33 C; 36 G; 0 T; 21 other;
gguugggcuc accaugacac agugugagac cucgggcuac aacauaggac ccgggcgcug 60
cucugacccc ucgugucuug uguugcagcc ggagggacgc agguccgca 109
//
ID mne-mir-187 standard; RNA; MNE; 109 BP.
XX
AC MI0002819;
XX
DE Macaca nemestrina miR-187 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 71..91
FT /accession="MIMAT0002517"
FT /product="mne-miR-187"
FT /evidence=not_experimental
FT /similarity="MI0000274"
XX
SQ Sequence 109 BP; 20 A; 33 C; 35 G; 0 T; 21 other;
ggucaggcuc acuaugacac agugugagac cucgggcuac aacacaggac ccgggugcug 60
cucugacccc ucgugucuug uguugcagcc ggagggacgc agguccgca 109
//
ID ppa-mir-187 standard; RNA; PPA; 109 BP.
XX
AC MI0002820;
XX
DE Pan paniscus miR-187 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 71..91
FT /accession="MIMAT0002518"
FT /product="ppa-miR-187"
FT /evidence=not_experimental
FT /similarity="MI0000274"
XX
SQ Sequence 109 BP; 19 A; 35 C; 36 G; 0 T; 19 other;
ggucgggcuc accaugacac agugugagac cucgggcuac aacacaggac ccgggcgcug 60
cucugacccc ucgugucuug uguugcagcc ggagggacgc agguccgca 109
//
ID mml-mir-196a-1 standard; RNA; MML; 70 BP.
XX
AC MI0002821;
XX
DE Macaca mulatta miR-196a-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315575; MIR196A-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..27
FT /accession="MIMAT0002519"
FT /product="mml-miR-196a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000238"
XX
SQ Sequence 70 BP; 19 A; 15 C; 15 G; 0 T; 21 other;
gugaauuagg uaguuucaug uuguugggcc uggguuucug aacacaacaa cauuaaacca 60
cccgauucac 70
//
ID ggo-mir-196-1 standard; RNA; GGO; 70 BP.
XX
AC MI0002822;
XX
DE Gorilla gorilla miR-196-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..27
FT /accession="MIMAT0002520"
FT /product="ggo-miR-196"
FT /evidence=not_experimental
FT /similarity="MI0000238"
XX
SQ Sequence 70 BP; 19 A; 15 C; 15 G; 0 T; 21 other;
gugaauuagg uaguuucaug uuguugggcc uggguuucug aacacaacaa cauuaaacca 60
cccgauucac 70
//
ID ppy-mir-196-1 standard; RNA; PPY; 70 BP.
XX
AC MI0002823;
XX
DE Pongo pygmaeus miR-196-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..27
FT /accession="MIMAT0002521"
FT /product="ppy-miR-196"
FT /evidence=not_experimental
FT /similarity="MI0000238"
XX
SQ Sequence 70 BP; 19 A; 15 C; 15 G; 0 T; 21 other;
gugaauuagg uaguuucaug uuguugggcc uggguuucug aacacaacaa cauuaaacca 60
cccgauucac 70
//
ID ptr-mir-196a-2 standard; RNA; PTR; 110 BP.
XX
AC MI0002824;
XX
DE Pan troglodytes miR-196a-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751914; MIR196A-2.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0002522"
FT /product="ptr-miR-196a"
FT /evidence=not_experimental
FT /similarity="MI0000279"
XX
SQ Sequence 110 BP; 21 A; 21 C; 32 G; 0 T; 36 other;
ugcucgcuca gcugaucugu ggcuuaggua guuucauguu guugggauug aguuuugaac 60
ucggcaacaa gaaacugccu gaguuacauc agucgguuuu cgucgagggc 110
//
ID ggo-mir-196-2 standard; RNA; GGO; 110 BP.
XX
AC MI0002825;
XX
DE Gorilla gorilla miR-196-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0002520"
FT /product="ggo-miR-196"
FT /evidence=not_experimental
FT /similarity="MI0000279"
XX
SQ Sequence 110 BP; 21 A; 21 C; 32 G; 0 T; 36 other;
ugcucgcuca gcugaucugu ggcuuaggua guuucauguu guugggauug aguuuugaac 60
ucggcaacaa gaaacugccu gaguuacauc agucgguuuu cgucgagggc 110
//
ID ppy-mir-196-2 standard; RNA; PPY; 110 BP.
XX
AC MI0002826;
XX
DE Pongo pygmaeus miR-196-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0002523"
FT /product="ppy-miR-196-2"
FT /evidence=not_experimental
FT /similarity="MI0000279"
XX
SQ Sequence 110 BP; 21 A; 21 C; 32 G; 0 T; 36 other;
ugcucgcuca gcugaucugu ggcuuaggua guuucauguu guugggauug aguuuugaac 60
ucggcaacaa gaaacugccu gaguuacauc agucgguuuu cgucgagggc 110
//
ID lla-mir-196 standard; RNA; LLA; 110 BP.
XX
AC MI0002827;
XX
DE Lagothrix lagotricha miR-196 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0002524"
FT /product="lla-miR-196"
FT /evidence=not_experimental
FT /similarity="MI0000279"
XX
SQ Sequence 110 BP; 21 A; 20 C; 32 G; 0 T; 37 other;
ugcuugcuca gcugaucugu ggcuuaggua guuucauguu guugggauug aguuuugaac 60
ucggcaacaa gaaacugccu gaguuacauc agucgguuuu cgucgagggc 110
//
ID age-mir-196 standard; RNA; AGE; 110 BP.
XX
AC MI0002828;
XX
DE Ateles geoffroyi miR-196 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0002525"
FT /product="age-miR-196"
FT /evidence=not_experimental
FT /similarity="MI0000279"
XX
SQ Sequence 110 BP; 21 A; 19 C; 33 G; 0 T; 37 other;
ugcuugcuca gcugaucugu ggcuuaggua guuucauguu guugggauug aguuuugaac 60
ucggcaacaa gaaacugccu gaguuacauc agucgguuuu cgucgagggg 110
//
ID ppa-mir-196 standard; RNA; PPA; 110 BP.
XX
AC MI0002829;
XX
DE Pan paniscus miR-196 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0002526"
FT /product="ppa-miR-196"
FT /evidence=not_experimental
FT /similarity="MI0000279"
XX
SQ Sequence 110 BP; 21 A; 21 C; 32 G; 0 T; 36 other;
ugcucgcuca gcugaucugu ggcuuaggua guuucauguu guugggauug aguuuugaac 60
ucggcaacaa gaaacugccu gaguuacauc agucgguuuu cgucgagggc 110
//
ID ggo-mir-199a standard; RNA; GGO; 110 BP.
XX
AC MI0002830;
XX
DE Gorilla gorilla miR-199a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..53
FT /accession="MIMAT0002527"
FT /product="ggo-miR-199a"
FT /evidence=not_experimental
FT /similarity="MI0000281"
XX
SQ Sequence 110 BP; 25 A; 27 C; 32 G; 0 T; 26 other;
aggaagcuuc uggagauccu gcuccgucgc cccaguguuc agacuaccug uucaggacaa 60
ugccguugua caguagucug cacauugguu agacugggca agggagagca 110
//
ID ppa-mir-199a standard; RNA; PPA; 110 BP.
XX
AC MI0002831;
XX
DE Pan paniscus miR-199a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..53
FT /accession="MIMAT0002528"
FT /product="ppa-miR-199a"
FT /evidence=not_experimental
FT /similarity="MI0000281"
XX
SQ Sequence 110 BP; 25 A; 27 C; 32 G; 0 T; 26 other;
aggaagcuuc uggagauccu gcuccgucgc cccaguguuc agacuaccug uucaggacaa 60
ugccguugua caguagucug cacauugguu agacugggca agggagagca 110
//
ID ppy-mir-199a standard; RNA; PPY; 110 BP.
XX
AC MI0002832;
XX
DE Pongo pygmaeus miR-199a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..53
FT /accession="MIMAT0002529"
FT /product="ppy-miR-199a"
FT /evidence=not_experimental
FT /similarity="MI0000281"
XX
SQ Sequence 110 BP; 25 A; 27 C; 32 G; 0 T; 26 other;
aggaagcuuc uggagauccu gcuccgucgc cccaguguuc agacuaccug uucaggacaa 60
ugccguugua caguagucug cacauugguu agacugggca agggagagca 110
//
ID ptr-mir-199a-2 standard; RNA; PTR; 110 BP.
XX
AC MI0002833;
XX
DE Pan troglodytes miR-199a-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751915; MIR199A-2.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..53
FT /accession="MIMAT0002530"
FT /product="ptr-miR-199a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000281"
XX
SQ Sequence 110 BP; 25 A; 27 C; 32 G; 0 T; 26 other;
aggaagcuuc uggagauccu gcuccgucgc cccaguguuc agacuaccug uucaggacaa 60
ugccguugua caguagucug cacauugguu agacugggca agggagagca 110
//
ID mml-mir-199a-1 standard; RNA; MML; 110 BP.
XX
AC MI0002834;
XX
DE Macaca mulatta miR-199a-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315491; MIR199A-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..53
FT /accession="MIMAT0002531"
FT /product="mml-miR-199a"
FT /evidence=not_experimental
FT /similarity="MI0000281"
XX
SQ Sequence 110 BP; 25 A; 27 C; 32 G; 0 T; 26 other;
aggaagcuuc uggagauccu gcuccgucgc cccaguguuc agacuaccug uucaggacaa 60
ugccguugua caguagucug cacauugguu agacugggca agggagagca 110
//
ID sla-mir-199a standard; RNA; SLA; 110 BP.
XX
AC MI0002835;
XX
DE Saguinus labiatus miR-199a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..53
FT /accession="MIMAT0002532"
FT /product="sla-miR-199a"
FT /evidence=not_experimental
FT /similarity="MI0000281"
XX
SQ Sequence 110 BP; 25 A; 27 C; 32 G; 0 T; 26 other;
aggaagcuuc uggagauccu gcuccgucgc cccaguguuc agacuaccug uucaggacaa 60
ugccguugua caguagucug cacauugguu agacugggca agggagagca 110
//
ID lla-mir-199a standard; RNA; LLA; 110 BP.
XX
AC MI0002836;
XX
DE Lagothrix lagotricha miR-199a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..53
FT /accession="MIMAT0002533"
FT /product="lla-miR-199a"
FT /evidence=not_experimental
FT /similarity="MI0000281"
XX
SQ Sequence 110 BP; 26 A; 27 C; 31 G; 0 T; 26 other;
aggaagcuuc uggagauccu gcuccgucgc cccaguguuc agacuaccug uucaggacaa 60
ugccguugua caguagucug cacauugguu agacugggca agggagaaca 110
//
ID mne-mir-199a standard; RNA; MNE; 110 BP.
XX
AC MI0002837;
XX
DE Macaca nemestrina miR-199a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 31..53
FT /accession="MIMAT0002534"
FT /product="mne-miR-199a"
FT /evidence=not_experimental
FT /similarity="MI0000281"
XX
SQ Sequence 110 BP; 25 A; 27 C; 32 G; 0 T; 26 other;
aggaagcuuc uggagauccu gcuccgucgc cccaguguuc agacuaccug uucaggacaa 60
ugccguugua caguagucug cacauugguu agacugggca agggagagca 110
//
ID ptr-mir-204 standard; RNA; PTR; 110 BP.
XX
AC MI0002838;
XX
DE Pan troglodytes miR-204 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751916; MIR204.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 33..54
FT /accession="MIMAT0002535"
FT /product="ptr-miR-204"
FT /evidence=not_experimental
FT /similarity="MI0000284"
XX
SQ Sequence 110 BP; 25 A; 24 C; 29 G; 0 T; 32 other;
ggcuacaguc uuucuucaug ugacucgugg acuucccuuu gucauccuau gccugagaau 60
auaugaagga ggcugggaag gcaaagggac guucaauugu caucacuggc 110
//
ID ggo-mir-204 standard; RNA; GGO; 110 BP.
XX
AC MI0002839;
XX
DE Gorilla gorilla miR-204 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 33..54
FT /accession="MIMAT0002536"
FT /product="ggo-miR-204"
FT /evidence=not_experimental
FT /similarity="MI0000284"
XX
SQ Sequence 110 BP; 25 A; 24 C; 29 G; 0 T; 32 other;
ggcuacaguc uuucuucaug ugacucgugg acuucccuuu gucauccuau gccugagaau 60
auaugaagga ggcugggaag gcaaagggac guucaauugu caucacuggc 110
//
ID ppy-mir-204 standard; RNA; PPY; 110 BP.
XX
AC MI0002840;
XX
DE Pongo pygmaeus miR-204 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 33..54
FT /accession="MIMAT0002537"
FT /product="ppy-miR-204"
FT /evidence=not_experimental
FT /similarity="MI0000284"
XX
SQ Sequence 110 BP; 25 A; 24 C; 29 G; 0 T; 32 other;
ggcuacaguc uuucuucaug ugacucgugg acuucccuuu gucauccuau gccugagaau 60
auaugaagga ggcugggaag gcaaagggac guucaauugu caucacuggc 110
//
ID sla-mir-204 standard; RNA; SLA; 110 BP.
XX
AC MI0002841;
XX
DE Saguinus labiatus miR-204 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 33..54
FT /accession="MIMAT0002538"
FT /product="sla-miR-204"
FT /evidence=not_experimental
FT /similarity="MI0000284"
XX
SQ Sequence 110 BP; 25 A; 24 C; 29 G; 0 T; 32 other;
ggcuacaguc uuucuucaug ugacucgugg acuucccuuu gucauccuau gccugagaau 60
auaugaagga ggcugggaag gcaaagggac guucaauugu caucacuggc 110
//
ID mne-mir-204 standard; RNA; MNE; 110 BP.
XX
AC MI0002842;
XX
DE Macaca nemestrina miR-204 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 33..54
FT /accession="MIMAT0002539"
FT /product="mne-miR-204"
FT /evidence=not_experimental
FT /similarity="MI0000284"
XX
SQ Sequence 110 BP; 25 A; 24 C; 29 G; 0 T; 32 other;
ggcuacaguc uuucuucaug ugacucgugg acuucccuuu gucauccuau gccugagaau 60
auaugaagga ggcugggaag gcaaagggac guucaauugu caucacuggc 110
//
ID ppa-mir-204 standard; RNA; PPA; 110 BP.
XX
AC MI0002843;
XX
DE Pan paniscus miR-204 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 33..54
FT /accession="MIMAT0002540"
FT /product="ppa-miR-204"
FT /evidence=not_experimental
FT /similarity="MI0000284"
XX
SQ Sequence 110 BP; 25 A; 24 C; 29 G; 0 T; 32 other;
ggcuacaguc uuucuucaug ugacucgugg acuucccuuu gucauccuau gccugagaau 60
auaugaagga ggcugggaag gcaaagggac guucaauugu caucacuggc 110
//
ID ggo-mir-205 standard; RNA; GGO; 110 BP.
XX
AC MI0002844;
XX
DE Gorilla gorilla miR-205 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 34..55
FT /accession="MIMAT0002541"
FT /product="ggo-miR-205"
FT /evidence=not_experimental
FT /similarity="MI0000285"
XX
SQ Sequence 110 BP; 28 A; 29 C; 24 G; 0 T; 29 other;
aaagauccuc agacaaucca ugugcuucuc uuguccuuca uuccaccgga gucugucuca 60
uacccaacca gauuucagug gagugaaguu caggaggcau ggagcugaca 110
//
ID age-mir-205 standard; RNA; AGE; 109 BP.
XX
AC MI0002845;
XX
DE Ateles geoffroyi miR-205 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 34..55
FT /accession="MIMAT0002542"
FT /product="age-miR-205"
FT /evidence=not_experimental
FT /similarity="MI0000285"
XX
SQ Sequence 109 BP; 25 A; 29 C; 27 G; 0 T; 28 other;
aaagauccuc gggcaaucca ugugcuucuc uuguccuuca uuccaccgga gucugucuca 60
uacccaacca gauuucagug gagugaaguc aggaggcaug gagcugacg 109
//
ID ppa-mir-205 standard; RNA; PPA; 110 BP.
XX
AC MI0002846;
XX
DE Pan paniscus miR-205 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 34..55
FT /accession="MIMAT0002543"
FT /product="ppa-miR-205"
FT /evidence=not_experimental
FT /similarity="MI0000285"
XX
SQ Sequence 110 BP; 28 A; 29 C; 24 G; 0 T; 29 other;
aaagauccuc agacaaucca ugugcuucuc uuguccuuca uuccaccgga gucugucuca 60
uacccaacca gauuucagug gagugaaguu caggaggcau ggagcugaca 110
//
ID ptr-mir-205 standard; RNA; PTR; 110 BP.
XX
AC MI0002847;
XX
DE Pan troglodytes miR-205 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751917; MIR205.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 34..55
FT /accession="MIMAT0002544"
FT /product="ptr-miR-205"
FT /evidence=not_experimental
FT /similarity="MI0000285"
XX
SQ Sequence 110 BP; 28 A; 29 C; 24 G; 0 T; 29 other;
aaagauccuc agacaaucca ugugcuucuc uuguccuuca uuccaccgga gucugucuca 60
uacccaacca gauuucagug gagugaaguu caggaggcau ggagcugaca 110
//
ID lla-mir-205 standard; RNA; LLA; 110 BP.
XX
AC MI0002848;
XX
DE Lagothrix lagotricha miR-205 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 34..55
FT /accession="MIMAT0002545"
FT /product="lla-miR-205"
FT /evidence=not_experimental
FT /similarity="MI0000285"
XX
SQ Sequence 110 BP; 25 A; 29 C; 27 G; 0 T; 29 other;
aaagauccuc gggcaaucca ugugcuucuc uuguccuuca uuccaccgga gucugucuca 60
uacccaacca gauuucagug gagugaaguu caggaggcau ggagcugacg 110
//
ID mne-mir-205 standard; RNA; MNE; 110 BP.
XX
AC MI0002849;
XX
DE Macaca nemestrina miR-205 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 34..55
FT /accession="MIMAT0002546"
FT /product="mne-miR-205"
FT /evidence=not_experimental
FT /similarity="MI0000285"
XX
SQ Sequence 110 BP; 26 A; 29 C; 26 G; 0 T; 29 other;
aaagauccuc aggcaaucca ugugcuucuc uuguccuuca uuccaccgga gucugucuca 60
uacccaacca gauuucagug gagugaaguu caggaggcau ggagcugacg 110
//
ID mml-mir-211 standard; RNA; MML; 109 BP.
XX
AC MI0002850;
XX
DE Macaca mulatta miR-211 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315139; MIR211.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0002547"
FT /product="mml-miR-211"
FT /evidence=not_experimental
FT /similarity="MI0000287"
XX
SQ Sequence 109 BP; 20 A; 30 C; 32 G; 0 T; 27 other;
ucacuggcca ugugacuugu gggcuucccu uugucauccu uugccuaggg cucugagcag 60
ggcagggaca gcaaaggggu gcucaguugu cacuucccac agcacagag 109
//
ID ppy-mir-211 standard; RNA; PPY; 110 BP.
XX
AC MI0002851;
XX
DE Pongo pygmaeus miR-211 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 26..47
FT /accession="MIMAT0002548"
FT /product="ppy-miR-211"
FT /evidence=not_experimental
FT /similarity="MI0000287"
XX
SQ Sequence 110 BP; 21 A; 33 C; 31 G; 0 T; 25 other;
ucacccagcc augugacuug uggacuuccc uuugucaucc uucgccuagg gcucugagca 60
gggcagggac agcaaagggg ugcucaguug ucacuuccca cagcacggag 110
//
ID mne-mir-211 standard; RNA; MNE; 109 BP.
XX
AC MI0002852;
XX
DE Macaca nemestrina miR-211 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..46
FT /accession="MIMAT0002549"
FT /product="mne-miR-211"
FT /evidence=not_experimental
FT /similarity="MI0000287"
XX
SQ Sequence 109 BP; 20 A; 31 C; 32 G; 0 T; 26 other;
ucacuggcca ugugacuugu gggcuucccu uugucauccu ucgccuaggg cucugagcag 60
ggcagggaca gcaaaggggu gcucaguugu cacuucccac agcacagag 109
//
ID ggo-mir-214 standard; RNA; GGO; 110 BP.
XX
AC MI0002853;
XX
DE Gorilla gorilla miR-214 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 71..91
FT /accession="MIMAT0002550"
FT /product="ggo-miR-214"
FT /evidence=not_experimental
FT /similarity="MI0000290"
XX
SQ Sequence 110 BP; 25 A; 34 C; 28 G; 0 T; 23 other;
ggccuggcug gacagaguug ucaugugucu gccugucuac acuugcugug cagaacaucc 60
gcucaccugu acagcaggca cagacaggca gucacaugac aacccagccu 110
//
ID age-mir-214 standard; RNA; AGE; 110 BP.
XX
AC MI0002854;
XX
DE Ateles geoffroyi miR-214 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 71..91
FT /accession="MIMAT0002551"
FT /product="age-miR-214"
FT /evidence=not_experimental
FT /similarity="MI0000290"
XX
SQ Sequence 110 BP; 25 A; 34 C; 28 G; 0 T; 23 other;
ggccuggcug gacagaguug ucaugugucu gccugucuac acuugcugug cagaacaucc 60
gcucaccugu acagcaggca cagacaggca gucacaugac aacccagccu 110
//
ID ppa-mir-214 standard; RNA; PPA; 110 BP.
XX
AC MI0002855;
XX
DE Pan paniscus miR-214 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 71..91
FT /accession="MIMAT0002552"
FT /product="ppa-miR-214"
FT /evidence=not_experimental
FT /similarity="MI0000290"
XX
SQ Sequence 110 BP; 25 A; 34 C; 28 G; 0 T; 23 other;
ggccuggcug gacagaguug ucaugugucu gccugucuac acuugcugug cagaacaucc 60
gcucaccugu acagcaggca cagacaggca gucacaugac aacccagccu 110
//
ID ppy-mir-214 standard; RNA; PPY; 110 BP.
XX
AC MI0002856;
XX
DE Pongo pygmaeus miR-214 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 71..91
FT /accession="MIMAT0002553"
FT /product="ppy-miR-214"
FT /evidence=not_experimental
FT /similarity="MI0000290"
XX
SQ Sequence 110 BP; 25 A; 34 C; 28 G; 0 T; 23 other;
ggccuggcug gacagaguug ucaugugucu gccugucuac acuugcugug cagaacaucc 60
gcucaccugu acagcaggca cagacaggca gucacaugac aacccagccu 110
//
ID ptr-mir-214 standard; RNA; PTR; 110 BP.
XX
AC MI0002857;
XX
DE Pan troglodytes miR-214 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751918; MIR214.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 71..91
FT /accession="MIMAT0002554"
FT /product="ptr-miR-214"
FT /evidence=not_experimental
FT /similarity="MI0000290"
XX
SQ Sequence 110 BP; 25 A; 34 C; 28 G; 0 T; 23 other;
ggccuggcug gacagaguug ucaugugucu gccugucuac acuugcugug cagaacaucc 60
gcucaccugu acagcaggca cagacaggca gucacaugac aacccagccu 110
//
ID mml-mir-214 standard; RNA; MML; 110 BP.
XX
AC MI0002858;
XX
DE Macaca mulatta miR-214 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315140; MIR214.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 30..51
FT /accession="MIMAT0026588"
FT /product="mml-miR-214-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT miRNA 71..91
FT /accession="MIMAT0002555"
FT /product="mml-miR-214-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000290"
XX
SQ Sequence 110 BP; 25 A; 34 C; 28 G; 0 T; 23 other;
ggccuggcug gacagaguug ucaugugucu gccugucuac acuugcugug cagaacaucc 60
gcucaccugu acagcaggca cagacaggca gucacaugac aacccagccu 110
//
ID sla-mir-214 standard; RNA; SLA; 110 BP.
XX
AC MI0002859;
XX
DE Saguinus labiatus miR-214 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 71..91
FT /accession="MIMAT0002556"
FT /product="sla-miR-214"
FT /evidence=not_experimental
FT /similarity="MI0000290"
XX
SQ Sequence 110 BP; 25 A; 34 C; 28 G; 0 T; 23 other;
ggccuggcug gacagaguug ucaugugucu gccugucuac acuugcugug cagaacaucc 60
gcucaccugu acagcaggca cagacaggca gucacaugac aacccagccu 110
//
ID mne-mir-214 standard; RNA; MNE; 110 BP.
XX
AC MI0002860;
XX
DE Macaca nemestrina miR-214 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 71..91
FT /accession="MIMAT0002557"
FT /product="mne-miR-214"
FT /evidence=not_experimental
FT /similarity="MI0000290"
XX
SQ Sequence 110 BP; 25 A; 34 C; 28 G; 0 T; 23 other;
ggccuggcug gacagaguug ucaugugucu gccugucuac acuugcugug cagaacaucc 60
gcucaccugu acagcaggca cagacaggca gucacaugac aacccagccu 110
//
ID lca-mir-216 standard; RNA; LCA; 110 BP.
XX
AC MI0002861;
XX
DE Lemur catta miR-216 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0002558"
FT /product="lca-miR-216"
FT /evidence=not_experimental
FT /similarity="MI0000292"
XX
SQ Sequence 110 BP; 27 A; 26 C; 26 G; 0 T; 31 other;
gauggcugug aguuggcuua aucucagcug gcaacuguga gauguucaua caaucccuca 60
caguggucuc ugggauuaug cuaaacagag caauuuccua gcccucacga 110
//
ID ptr-mir-216a standard; RNA; PTR; 110 BP.
XX
AC MI0002862;
XX
DE Pan troglodytes miR-216a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751919; MIR216A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 18..38
FT /accession="MIMAT0002559"
FT /product="ptr-miR-216a"
FT /evidence=not_experimental
FT /similarity="MI0000292"
XX
SQ Sequence 110 BP; 27 A; 26 C; 26 G; 0 T; 31 other;
gauggcugug aguuggcuua aucucagcug gcaacuguga gauguucaua caaucccuca 60
caguggucuc ugggauuaug cuaaacagag caauuuccua gcccucacga 110
//
ID ggo-mir-216 standard; RNA; GGO; 110 BP.
XX
AC MI0002863;
XX
DE Gorilla gorilla miR-216 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0002560"
FT /product="ggo-miR-216"
FT /evidence=not_experimental
FT /similarity="MI0000292"
XX
SQ Sequence 110 BP; 27 A; 26 C; 26 G; 0 T; 31 other;
gauggcugug aguuggcuua aucucagcug gcaacuguga gauguucaua caaucccuca 60
caguggucuc ugggauuaug cuaaacagag caauuuccua gcccucacga 110
//
ID ppy-mir-216a standard; RNA; PPY; 110 BP.
XX
AC MI0002864;
XX
DE Pongo pygmaeus miR-216 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0002561"
FT /product="ppy-miR-216a"
FT /evidence=not_experimental
FT /similarity="MI0000292"
XX
SQ Sequence 110 BP; 26 A; 26 C; 26 G; 0 T; 32 other;
gauggcugug aguuggcuua aucucagcug gcaacuguga gauguucaua caaucccuca 60
caguggucuc ugggauuaug cuaaacagag caauuuccuu gcccucacga 110
//
ID ppa-mir-216 standard; RNA; PPA; 110 BP.
XX
AC MI0002865;
XX
DE Pan paniscus miR-216 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 19..39
FT /accession="MIMAT0002562"
FT /product="ppa-miR-216"
FT /evidence=not_experimental
FT /similarity="MI0000292"
XX
SQ Sequence 110 BP; 27 A; 26 C; 26 G; 0 T; 31 other;
gauggcugug aguuggcuua aucucagcug gcaacuguga gauguucaua caaucccuca 60
caguggucuc ugggauuaug cuaaacagag caauuuccua gcccucacga 110
//
ID ggo-mir-217 standard; RNA; GGO; 110 BP.
XX
AC MI0002866;
XX
DE Gorilla gorilla miR-217 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 35..58
FT /accession="MIMAT0002563"
FT /product="ggo-miR-217"
FT /evidence=not_experimental
FT /similarity="MI0000293"
XX
SQ Sequence 110 BP; 36 A; 21 C; 19 G; 0 T; 34 other;
aguauaauua uuacauaguu uuugaugucg cagauacugc aucaggaacu gauuggauaa 60
gaaucaguca ccaucaguuc cuaaugcauu gccuucagca ucuaaacaag 110
//
ID ppa-mir-217 standard; RNA; PPA; 110 BP.
XX
AC MI0002867;
XX
DE Pan paniscus miR-217 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 35..58
FT /accession="MIMAT0002564"
FT /product="ppa-miR-217"
FT /evidence=not_experimental
FT /similarity="MI0000293"
XX
SQ Sequence 110 BP; 36 A; 21 C; 19 G; 0 T; 34 other;
aguauaauua uuacauaguu uuugaugucg cagauacugc aucaggaacu gauuggauaa 60
gaaucaguca ccaucaguuc cuaaugcauu gccuucagca ucuaaacaag 110
//
ID ggo-mir-218 standard; RNA; GGO; 110 BP.
XX
AC MI0002868;
XX
DE Gorilla gorilla miR-218 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0002565"
FT /product="ggo-miR-218"
FT /evidence=not_experimental
FT /similarity="MI0000294"
XX
SQ Sequence 110 BP; 28 A; 21 C; 28 G; 0 T; 33 other;
gugauaaugu agcgagauuu ucuguugugc uugaucuaac caugugguug cgagguauga 60
guaaaacaug guuccgucaa gcaccaugga acgucacgca gcuuucuaca 110
//
ID age-mir-218 standard; RNA; AGE; 110 BP.
XX
AC MI0002869;
XX
DE Ateles geoffroyi miR-218 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0002566"
FT /product="age-miR-218"
FT /evidence=not_experimental
FT /similarity="MI0000294"
XX
SQ Sequence 110 BP; 28 A; 21 C; 28 G; 0 T; 33 other;
gugauaaugu agcgagauuu ucuguugugc uugaucuaac caugugguug cgagguauga 60
guaaaacaug guuccgucaa gcaccaugga acgucacgca gcuuucuaca 110
//
ID ppa-mir-218-1 standard; RNA; PPA; 110 BP.
XX
AC MI0002870;
XX
DE Pan paniscus miR-218-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0002567"
FT /product="ppa-miR-218"
FT /evidence=not_experimental
FT /similarity="MI0000294"
XX
SQ Sequence 110 BP; 28 A; 21 C; 28 G; 0 T; 33 other;
gugauaaugu agcgagauuu ucuguugugc uugaucuaac caugugguug cgagguauga 60
guaaaacaug guuccgucaa gcaccaugga acgucacgca gcuuucuaca 110
//
ID lca-mir-218 standard; RNA; LCA; 110 BP.
XX
AC MI0002871;
XX
DE Lemur catta miR-218 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0002568"
FT /product="lca-miR-218"
FT /evidence=not_experimental
FT /similarity="MI0000294"
XX
SQ Sequence 110 BP; 28 A; 22 C; 27 G; 0 T; 33 other;
gugauaaugu agcgagauuu ucuguugugc uugaucuaac caugugguug ccagguauga 60
guaaaacaug guuccgucaa gcaccaugga acgucacgca gcuuucuaca 110
//
ID ppy-mir-218-1 standard; RNA; PPY; 110 BP.
XX
AC MI0002872;
XX
DE Pongo pygmaeus miR-218-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0002569"
FT /product="ppy-miR-218"
FT /evidence=not_experimental
FT /similarity="MI0000294"
XX
SQ Sequence 110 BP; 28 A; 21 C; 28 G; 0 T; 33 other;
gugauaaugu agcgagauuu ucuguugugc uugaucuaac caugugguug cgagguauga 60
guaaaacaug guuccgucaa gcaccaugga acgucacgca gcuuucuaca 110
//
ID ptr-mir-218-1 standard; RNA; PTR; 110 BP.
XX
AC MI0002873;
XX
DE Pan troglodytes miR-218-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751920; MIR218-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0002570"
FT /product="ptr-miR-218"
FT /evidence=not_experimental
FT /similarity="MI0000294"
XX
SQ Sequence 110 BP; 28 A; 21 C; 28 G; 0 T; 33 other;
gugauaaugu agcgagauuu ucuguugugc uugaucuaac caugugguug cgagguauga 60
guaaaacaug guuccgucaa gcaccaugga acgucacgca gcuuucuaca 110
//
ID sla-mir-218-1 standard; RNA; SLA; 110 BP.
XX
AC MI0002874;
XX
DE Saguinus labiatus miR-218-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0002571"
FT /product="sla-miR-218"
FT /evidence=not_experimental
FT /similarity="MI0000294"
XX
SQ Sequence 110 BP; 28 A; 21 C; 28 G; 0 T; 33 other;
gugauaaugu agcgagauuu ucuguugugc uugaucuaac caugugguug cgagguauga 60
guaaaacaug guuccgucaa gcaccaugga acgucacgca gcuuucuaca 110
//
ID lla-mir-218-1 standard; RNA; LLA; 110 BP.
XX
AC MI0002875;
XX
DE Lagothrix lagotricha miR-218-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0002572"
FT /product="lla-miR-218"
FT /evidence=not_experimental
FT /similarity="MI0000294"
XX
SQ Sequence 110 BP; 28 A; 21 C; 28 G; 0 T; 33 other;
gugauaaugu agcgagauuu ucuguugugc uugaucuaac caugugguug cgagguauga 60
guaaaacaug guuccgucaa gcaccaugga acgucacgca gcuuucuaca 110
//
ID mne-mir-218-1 standard; RNA; MNE; 110 BP.
XX
AC MI0002876;
XX
DE Macaca nemestrina miR-218-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0002573"
FT /product="mne-miR-218"
FT /evidence=not_experimental
FT /similarity="MI0000294"
XX
SQ Sequence 110 BP; 28 A; 22 C; 28 G; 0 T; 32 other;
gugacaaugu agcgagauuu ucuguugugc uugaucuaac caugugguug cgagguauga 60
guaaaacaug guuccgucaa gcaccaugga acgucacgca gcuuucuaca 110
//
ID ppa-mir-218-2 standard; RNA; PPA; 110 BP.
XX
AC MI0002877;
XX
DE Pan paniscus miR-218-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0002567"
FT /product="ppa-miR-218"
FT /evidence=not_experimental
FT /similarity="MI0000295"
XX
SQ Sequence 110 BP; 23 A; 29 C; 32 G; 0 T; 26 other;
gaccagucgc ugcggggcuu uccuuugugc uugaucuaac cauguggugg aacgauggaa 60
acggaacaug guucugucaa gcaccgcgga aagcaccgug cucuccugca 110
//
ID ppy-mir-218-2 standard; RNA; PPY; 113 BP.
XX
AC MI0002878;
XX
DE Pongo pygmaeus miR-218-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 28..48
FT /accession="MIMAT0002569"
FT /product="ppy-miR-218"
FT /evidence=not_experimental
FT /similarity="MI0000295"
XX
SQ Sequence 113 BP; 24 A; 29 C; 32 G; 0 T; 28 other;
gaccagucgc uuaugcgggg cuuuccuuug ugcuugaucu aaccaugugg uggaacgaug 60
gaaacggaac augguucugu caagcaccgc ggaaagcacc gugcucuccu gca 113
//
ID ptr-mir-218-2 standard; RNA; PTR; 110 BP.
XX
AC MI0002879;
XX
DE Pan troglodytes miR-218-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751921; MIR218-2.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0002570"
FT /product="ptr-miR-218"
FT /evidence=not_experimental
FT /similarity="MI0000295"
XX
SQ Sequence 110 BP; 23 A; 29 C; 32 G; 0 T; 26 other;
gaccagucgc ugcggggcuu uccuuugugc uugaucuaac cauguggugg aacgauggaa 60
acggaacaug guucugucaa gcaccgcgga aagcaccgug cucuccugca 110
//
ID mml-mir-218-2 standard; RNA; MML; 110 BP.
XX
AC MI0002880;
XX
DE Macaca mulatta miR-218-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315141; MIR218-2.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0002574"
FT /product="mml-miR-218-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000295"
FT miRNA 68..88
FT /accession="MIMAT0026589"
FT /product="mml-miR-218-2-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 110 BP; 23 A; 29 C; 32 G; 0 T; 26 other;
gaccagucgc ugcggggcuu uccuuugugc uugaucuaac cauguggugg aacgauggaa 60
acggaacaug guucugucaa gcaccgcgga aagcaccgug cucuccugca 110
//
ID sla-mir-218-2 standard; RNA; SLA; 110 BP.
XX
AC MI0002881;
XX
DE Saguinus labiatus miR-218-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0002571"
FT /product="sla-miR-218"
FT /evidence=not_experimental
FT /similarity="MI0000295"
XX
SQ Sequence 110 BP; 24 A; 29 C; 31 G; 0 T; 26 other;
gaccagucgc ugcggagcuu uccuuugugc uugaucuaac cauguggugg aacgauggaa 60
acggaacaug guucugucaa gcaccgcgga aagcaccgug cucuccugca 110
//
ID lla-mir-218-2 standard; RNA; LLA; 110 BP.
XX
AC MI0002882;
XX
DE Lagothrix lagotricha miR-218-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0002572"
FT /product="lla-miR-218"
FT /evidence=not_experimental
FT /similarity="MI0000295"
XX
SQ Sequence 110 BP; 23 A; 29 C; 32 G; 0 T; 26 other;
gaccagucgc ugcggggcuu uccuuugugc uugaucuaac cauguggugg aacgauggaa 60
acggaacaug guucugucaa gcaccgcgga aagcaccgug cucuccugca 110
//
ID mne-mir-218-2 standard; RNA; MNE; 110 BP.
XX
AC MI0002883;
XX
DE Macaca nemestrina miR-218-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..45
FT /accession="MIMAT0002573"
FT /product="mne-miR-218"
FT /evidence=not_experimental
FT /similarity="MI0000295"
XX
SQ Sequence 110 BP; 23 A; 29 C; 32 G; 0 T; 26 other;
gaccagucgc ugcggggcuu uccuuugugc uugaucuaac cauguggugg aacgauggaa 60
acggaacaug guucugucaa gcaccgcgga aagcaccgug cucuccugca 110
//
ID mml-mir-219-1 standard; RNA; MML; 110 BP.
XX
AC MI0002884;
XX
DE Macaca mulatta miR-219-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315492; MIR219-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0002575"
FT /product="mml-miR-219"
FT /evidence=not_experimental
FT /similarity="MI0000296"
XX
SQ Sequence 110 BP; 17 A; 40 C; 34 G; 0 T; 19 other;
ccgccccggg ccgcggcucc ugauugucca aacgcaauuc ucgagucuau ggcucuggcc 60
gagaguugag ucuggacguc ccgagccgcc gcccccaaac cucgaggggg 110
//
ID ggo-mir-219 standard; RNA; GGO; 110 BP.
XX
AC MI0002885;
XX
DE Gorilla gorilla miR-219 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0002576"
FT /product="ggo-miR-219"
FT /evidence=not_experimental
FT /similarity="MI0000296"
XX
SQ Sequence 110 BP; 17 A; 42 C; 33 G; 0 T; 18 other;
ccgccccggg ccgcggcucc ugauugucca aacgcaauuc ucgagucuau ggcuccggcc 60
gagaguugag ucuggacguc ccgagccgcc gcccccaaac cucgagcggg 110
//
ID ppy-mir-219-1 standard; RNA; PPY; 110 BP.
XX
AC MI0002886;
XX
DE Pongo pygmaeus miR-219 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 21..41
FT /accession="MIMAT0002577"
FT /product="ppy-miR-219"
FT /evidence=not_experimental
FT /similarity="MI0000296"
XX
SQ Sequence 110 BP; 17 A; 43 C; 33 G; 0 T; 17 other;
ccgccccggg ccgcggcucc ugauugucca aacgcaauuc ucgagucuau ggccccggcc 60
gagaguugag ucuggacguc ccgagccgcc gcccccaaac cucgagcggg 110
//
ID mml-mir-221 standard; RNA; MML; 110 BP.
XX
AC MI0002892;
XX
DE Macaca mulatta miR-221 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315142; MIR221.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 25..50
FT /accession="MIMAT0026590"
FT /product="mml-miR-221-5p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
FT miRNA 65..87
FT /accession="MIMAT0002583"
FT /product="mml-miR-221-3p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000298"
XX
SQ Sequence 110 BP; 25 A; 24 C; 28 G; 0 T; 33 other;
ugaacaucca ggucuggggc augaaccugg cauacaaugu agauuucugu guucguuagg 60
caacagcuac auugucugcu ggguuucagg cuaccuggaa acauguucuc 110
//
ID ggo-mir-221 standard; RNA; GGO; 110 BP.
XX
AC MI0002893;
XX
DE Gorilla gorilla miR-221 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 65..87
FT /accession="MIMAT0002584"
FT /product="ggo-miR-221"
FT /evidence=not_experimental
FT /similarity="MI0000298"
XX
SQ Sequence 110 BP; 25 A; 24 C; 28 G; 0 T; 33 other;
ugaacaucca ggucuggggc augaaccugg cauacaaugu agauuucugu guucguuagg 60
caacagcuac auugucugcu ggguuucagg cuaccuggaa acauguucuc 110
//
ID ppy-mir-221 standard; RNA; PPY; 110 BP.
XX
AC MI0002894;
XX
DE Pongo pygmaeus miR-221 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 65..87
FT /accession="MIMAT0002585"
FT /product="ppy-miR-221"
FT /evidence=not_experimental
FT /similarity="MI0000298"
XX
SQ Sequence 110 BP; 25 A; 24 C; 28 G; 0 T; 33 other;
ugaacaucca ggucuggggc augaaccugg cauacaaugu agauuucugu guucguuagg 60
caacagcuac auugucugcu ggguuucagg cuaccuggaa acauguucuc 110
//
ID ppa-mir-221 standard; RNA; PPA; 110 BP.
XX
AC MI0002895;
XX
DE Pan paniscus miR-221 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 65..87
FT /accession="MIMAT0002586"
FT /product="ppa-miR-221"
FT /evidence=not_experimental
FT /similarity="MI0000298"
XX
SQ Sequence 110 BP; 25 A; 24 C; 28 G; 0 T; 33 other;
ugaacaucca ggucuggggc augaaccugg cauacaaugu agauuucugu guucguuagg 60
caacagcuac auugucugcu ggguuucagg cuaccuggaa acauguucuc 110
//
ID age-mir-222 standard; RNA; AGE; 110 BP.
XX
AC MI0002896;
XX
DE Ateles geoffroyi miR-222 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 69..92
FT /accession="MIMAT0002587"
FT /product="age-miR-222"
FT /evidence=not_experimental
FT /similarity="MI0000299"
XX
SQ Sequence 110 BP; 19 A; 25 C; 30 G; 0 T; 36 other;
ucugccggaa ggugugggua cccucagugg cucaguagcc aguguagauc cugucuuuug 60
uaaucaguag cuacaucugg cuacuggguc ucugauggca ucuuuuagcu 110
//
ID mml-mir-223 standard; RNA; MML; 110 BP.
XX
AC MI0002897;
XX
DE Macaca mulatta miR-223 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315438; MIR223.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 68..88
FT /accession="MIMAT0002588"
FT /product="mml-miR-223"
FT /evidence=not_experimental
FT /similarity="MI0000300"
XX
SQ Sequence 110 BP; 22 A; 31 C; 29 G; 0 T; 28 other;
cccggccucc ugcagugcca cgcuccgugu auuugacaag cugaguugga cacuccgugu 60
gguagagugu caguuuguca aauaccccaa gugcggcaua ugcuuaccag 110
//
ID ptr-mir-223 standard; RNA; PTR; 110 BP.
XX
AC MI0002898;
XX
DE Pan troglodytes miR-223 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751923; MIR223.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 68..88
FT /accession="MIMAT0002589"
FT /product="ptr-miR-223"
FT /evidence=not_experimental
FT /similarity="MI0000300"
XX
SQ Sequence 110 BP; 23 A; 31 C; 28 G; 0 T; 28 other;
ccuggccucc ugcagugcca cgcuccgugu auuugacaag cugaguugga cacuccaugu 60
gguagagugu caguuuguca aauaccccaa gugcggcaca ugcuuaccag 110
//
ID ggo-mir-223 standard; RNA; GGO; 110 BP.
XX
AC MI0002899;
XX
DE Gorilla gorilla miR-223 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 68..88
FT /accession="MIMAT0002590"
FT /product="ggo-miR-223"
FT /evidence=not_experimental
FT /similarity="MI0000300"
XX
SQ Sequence 110 BP; 23 A; 31 C; 28 G; 0 T; 28 other;
ccuggccucc ugcagugcca cgcuccgugu auuugacaag cugaguugga cacuccaugu 60
gguagagugu caguuuguca aauaccccaa gugcggcaca ugcuuaccag 110
//
ID ppy-mir-223 standard; RNA; PPY; 110 BP.
XX
AC MI0002900;
XX
DE Pongo pygmaeus miR-223 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 68..88
FT /accession="MIMAT0002591"
FT /product="ppy-miR-223"
FT /evidence=not_experimental
FT /similarity="MI0000300"
XX
SQ Sequence 110 BP; 23 A; 31 C; 28 G; 0 T; 28 other;
ccuggccucc ugcagugcca cgcuccgugu auuugacaag cugaguuaga cacuccgugu 60
gguagagugu caguuuguca aauaccccaa gugcggcaca ugcuuaccag 110
//
ID sla-mir-223 standard; RNA; SLA; 110 BP.
XX
AC MI0002901;
XX
DE Saguinus labiatus miR-223 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 68..88
FT /accession="MIMAT0002592"
FT /product="sla-miR-223"
FT /evidence=not_experimental
FT /similarity="MI0000300"
XX
SQ Sequence 110 BP; 23 A; 30 C; 29 G; 0 T; 28 other;
ccuggccucc ugcagugcca cgcuccgugu auuugacaag cugaguugga cacuccgugu 60
gguagagugu caguuuguca aauaccccaa gugcgacaca ugcuuagcag 110
//
ID ppa-mir-223 standard; RNA; PPA; 110 BP.
XX
AC MI0002902;
XX
DE Pan paniscus miR-223 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 68..88
FT /accession="MIMAT0002593"
FT /product="ppa-miR-223"
FT /evidence=not_experimental
FT /similarity="MI0000300"
XX
SQ Sequence 110 BP; 23 A; 31 C; 28 G; 0 T; 28 other;
ccuggccucc ugcagugcca cgcuccgugu auuugacaag cugaguugga cacuccaugu 60
gguagagugu caguuuguca aauaccccaa gugcggcaca ugcuuaccag 110
//
ID mml-mir-224 standard; RNA; MML; 81 BP.
XX
AC MI0002903;
XX
DE Macaca mulatta miR-224 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315143; MIR224.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0002594"
FT /product="mml-miR-224-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000301"
FT miRNA 56..76
FT /accession="MIMAT0026591"
FT /product="mml-miR-224-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 81 BP; 19 A; 16 C; 20 G; 0 T; 26 other;
gggcuuucaa gucacuagug guuccguuua guagaugauu gugcauuguu ucaaaauggu 60
gcccuaguga cuacaaagcc c 81
//
ID ptr-mir-224 standard; RNA; PTR; 81 BP.
XX
AC MI0002904;
XX
DE Pan troglodytes miR-224 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751924; MIR224.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0002595"
FT /product="ptr-miR-224"
FT /evidence=not_experimental
FT /similarity="MI0000301"
XX
SQ Sequence 81 BP; 19 A; 16 C; 20 G; 0 T; 26 other;
gggcuuucaa gucacuagug guuccguuua guagaugauu gugcauuguu ucaaaauggu 60
gcccuaguga cuacaaagcc c 81
//
ID ggo-mir-224 standard; RNA; GGO; 81 BP.
XX
AC MI0002905;
XX
DE Gorilla gorilla miR-224 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0002596"
FT /product="ggo-miR-224"
FT /evidence=not_experimental
FT /similarity="MI0000301"
XX
SQ Sequence 81 BP; 19 A; 16 C; 20 G; 0 T; 26 other;
gggcuuucaa gucacuagug guuccguuua guagaugauu gugcauuguu ucaaaauggu 60
gcccuaguga cuacaaagcc c 81
//
ID ppy-mir-224 standard; RNA; PPY; 81 BP.
XX
AC MI0002906;
XX
DE Pongo pygmaeus miR-224 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0002597"
FT /product="ppy-miR-224"
FT /evidence=not_experimental
FT /similarity="MI0000301"
XX
SQ Sequence 81 BP; 19 A; 16 C; 20 G; 0 T; 26 other;
gggcuuucaa gucacuagug guuccguuua guagaugauu gugcauuguu ucaaaauggu 60
gcccuaguga cuacaaagcc c 81
//
ID mne-mir-224 standard; RNA; MNE; 81 BP.
XX
AC MI0002907;
XX
DE Macaca nemestrina miR-224 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0002598"
FT /product="mne-miR-224"
FT /evidence=not_experimental
FT /similarity="MI0000301"
XX
SQ Sequence 81 BP; 19 A; 16 C; 20 G; 0 T; 26 other;
gggcuuucaa gucacuagug guuccguuua guagaugauu gugcauuguu ucaaaauggu 60
gcccuaguga cuacaaagcc c 81
//
ID ppa-mir-224 standard; RNA; PPA; 81 BP.
XX
AC MI0002908;
XX
DE Pan paniscus miR-224 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..30
FT /accession="MIMAT0002599"
FT /product="ppa-miR-224"
FT /evidence=not_experimental
FT /similarity="MI0000301"
XX
SQ Sequence 81 BP; 19 A; 16 C; 20 G; 0 T; 26 other;
gggcuuucaa gucacuagug guuccguuua guagaugauu gugcauuguu ucaaaauggu 60
gcccuaguga cuacaaagcc c 81
//
ID ptr-mir-197 standard; RNA; PTR; 75 BP.
XX
AC MI0002909;
XX
DE Pan troglodytes miR-197 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751925; MIR197.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 48..69
FT /accession="MIMAT0002600"
FT /product="ptr-miR-197"
FT /evidence=not_experimental
FT /similarity="MI0000239"
XX
SQ Sequence 75 BP; 14 A; 24 C; 23 G; 0 T; 14 other;
ggcugugccg gguagagagg gcagugggag guaagagcuc uucacccuuc accaccuucu 60
ccacccagca uggcc 75
//
ID ppy-mir-197 standard; RNA; PPY; 75 BP.
XX
AC MI0002910;
XX
DE Pongo pygmaeus miR-197 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 48..69
FT /accession="MIMAT0002601"
FT /product="ppy-miR-197"
FT /evidence=not_experimental
FT /similarity="MI0000239"
XX
SQ Sequence 75 BP; 14 A; 24 C; 23 G; 0 T; 14 other;
ggcugugccg gguagagagg gcagugggag guaagagcuc uucacccuuc accaccuucu 60
ccacccagca uggcc 75
//
ID mne-mir-197 standard; RNA; MNE; 75 BP.
XX
AC MI0002911;
XX
DE Macaca nemestrina miR-197 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 48..69
FT /accession="MIMAT0002602"
FT /product="mne-miR-197"
FT /evidence=not_experimental
FT /similarity="MI0000239"
XX
SQ Sequence 75 BP; 13 A; 24 C; 24 G; 0 T; 14 other;
ggcugugccg gguagagagg gcagugggag guaagagcuc uucacccuuc accaccuucu 60
ccacccggca uggcc 75
//
ID age-mir-197 standard; RNA; AGE; 75 BP.
XX
AC MI0002912;
XX
DE Ateles geoffroyi miR-197 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 48..69
FT /accession="MIMAT0002603"
FT /product="age-miR-197"
FT /evidence=not_experimental
FT /similarity="MI0000239"
XX
SQ Sequence 75 BP; 14 A; 24 C; 23 G; 0 T; 14 other;
ggcugugccg gguagagagg gcagugggag guaagagcuc uucacccuuc accaccuucu 60
ccacccagca uggcc 75
//
ID ppa-mir-197 standard; RNA; PPA; 75 BP.
XX
AC MI0002913;
XX
DE Pan paniscus miR-197 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 48..69
FT /accession="MIMAT0002604"
FT /product="ppa-miR-197"
FT /evidence=not_experimental
FT /similarity="MI0000239"
XX
SQ Sequence 75 BP; 14 A; 24 C; 23 G; 0 T; 14 other;
ggcugugccg gguagagagg gcagugggag guaagagcuc uucacccuuc accaccuucu 60
ccacccagca uggcc 75
//
ID ggo-mir-198 standard; RNA; GGO; 62 BP.
XX
AC MI0002914;
XX
DE Gorilla gorilla miR-198 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..24
FT /accession="MIMAT0002605"
FT /product="ggo-miR-198"
FT /evidence=not_experimental
FT /similarity="MI0000240"
XX
SQ Sequence 62 BP; 15 A; 10 C; 14 G; 0 T; 23 other;
ucauuggucc agaggggaga uagguuccug ugauuuuucc uucuucucua uagaauaaau 60
ga 62
//
ID age-mir-198 standard; RNA; AGE; 62 BP.
XX
AC MI0002915;
XX
DE Ateles geoffroyi miR-198 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..24
FT /accession="MIMAT0002606"
FT /product="age-miR-198"
FT /evidence=not_experimental
FT /similarity="MI0000240"
XX
SQ Sequence 62 BP; 14 A; 11 C; 15 G; 0 T; 22 other;
ucacuggucc agaggggagc uagguaccug ugauuuuucc uucuuuucug uagaauaaau 60
ga 62
//
ID ppa-mir-198 standard; RNA; PPA; 62 BP.
XX
AC MI0002916;
XX
DE Pan paniscus miR-198 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..24
FT /accession="MIMAT0002607"
FT /product="ppa-miR-198"
FT /evidence=not_experimental
FT /similarity="MI0000240"
XX
SQ Sequence 62 BP; 14 A; 10 C; 15 G; 0 T; 23 other;
ucauuggucc agaggggaga uagguuccug ugauuuuucc uucuucucug uagaauaaau 60
ga 62
//
ID ppy-mir-198 standard; RNA; PPY; 62 BP.
XX
AC MI0002917;
XX
DE Pongo pygmaeus miR-198 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..24
FT /accession="MIMAT0002608"
FT /product="ppy-miR-198"
FT /evidence=not_experimental
FT /similarity="MI0000240"
XX
SQ Sequence 62 BP; 14 A; 10 C; 15 G; 0 T; 23 other;
ucauuggucc agaggggaga uagguuccug ugauuuuucc uucuucucug uagaauaaau 60
ga 62
//
ID ptr-mir-198 standard; RNA; PTR; 62 BP.
XX
AC MI0002918;
XX
DE Pan troglodytes miR-198 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751926; MIR198.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..24
FT /accession="MIMAT0002609"
FT /product="ptr-miR-198"
FT /evidence=not_experimental
FT /similarity="MI0000240"
XX
SQ Sequence 62 BP; 14 A; 10 C; 15 G; 0 T; 23 other;
ucauuggucc agaggggaga uagguuccug ugauuuuucc uucuucucug uagaauaaau 60
ga 62
//
ID mml-mir-198 standard; RNA; MML; 62 BP.
XX
AC MI0002919;
XX
DE Macaca mulatta miR-198 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315144; MIR198.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..24
FT /accession="MIMAT0002610"
FT /product="mml-miR-198"
FT /evidence=not_experimental
FT /similarity="MI0000240"
XX
SQ Sequence 62 BP; 15 A; 10 C; 14 G; 0 T; 23 other;
ucauuggucc agaggggaaa uagguuccug ugauuuuucc uucuucucug uagaauaaau 60
ga 62
//
ID sla-mir-198 standard; RNA; SLA; 62 BP.
XX
AC MI0002920;
XX
DE Saguinus labiatus miR-198 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..24
FT /accession="MIMAT0002611"
FT /product="sla-miR-198"
FT /evidence=not_experimental
FT /similarity="MI0000240"
XX
SQ Sequence 62 BP; 14 A; 11 C; 14 G; 0 T; 23 other;
ucauuggucc agaggggagc ucgauaccug ugauuuuucc uucuuuucug uagaauaaau 60
ga 62
//
ID lla-mir-198 standard; RNA; LLA; 62 BP.
XX
AC MI0002921;
XX
DE Lagothrix lagotricha miR-198 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..24
FT /accession="MIMAT0002612"
FT /product="lla-miR-198"
FT /evidence=not_experimental
FT /similarity="MI0000240"
XX
SQ Sequence 62 BP; 15 A; 10 C; 14 G; 0 T; 23 other;
ucacuggucc agaagggagc uagguacuug ugauuuuucc uucuuuucug uagaauaaau 60
ga 62
//
ID mne-mir-198 standard; RNA; MNE; 62 BP.
XX
AC MI0002922;
XX
DE Macaca nemestrina miR-198 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..24
FT /accession="MIMAT0002613"
FT /product="mne-miR-198"
FT /evidence=not_experimental
FT /similarity="MI0000240"
XX
SQ Sequence 62 BP; 15 A; 10 C; 14 G; 0 T; 23 other;
ucauuggucc agaggggaaa uagguuccug ugauuuuucc uucuucucug uagaauaaau 60
ga 62
//
ID ptr-mir-30c-2 standard; RNA; PTR; 72 BP.
XX
AC MI0002923;
XX
DE Pan troglodytes miR-30c-2 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751927; MIR30C-2.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0002614"
FT /product="ptr-miR-30c"
FT /evidence=not_experimental
FT /similarity="MI0000254"
XX
SQ Sequence 72 BP; 22 A; 14 C; 16 G; 0 T; 20 other;
agauacugua aacauccuac acucucagcu guggaaagua agaaagcugg gagaaggcug 60
uuuacucuuu cu 72
//
ID lla-mir-30c standard; RNA; LLA; 72 BP.
XX
AC MI0002924;
XX
DE Lagothrix lagotricha miR-30c stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0002615"
FT /product="lla-miR-30c"
FT /evidence=not_experimental
FT /similarity="MI0000254"
XX
SQ Sequence 72 BP; 22 A; 14 C; 16 G; 0 T; 20 other;
agauacugua aacauccuac acucucagcu guggaaagua agaaagcugg gagaaggcug 60
uuuacucuuu cu 72
//
ID mne-mir-30c standard; RNA; MNE; 72 BP.
XX
AC MI0002925;
XX
DE Macaca nemestrina miR-30c stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 7..29
FT /accession="MIMAT0002616"
FT /product="mne-miR-30c"
FT /evidence=not_experimental
FT /similarity="MI0000254"
XX
SQ Sequence 72 BP; 22 A; 14 C; 16 G; 0 T; 20 other;
agauacugua aacauccuac acucucagcu guggaaagua agaaagcugg gagaaggcug 60
uuuacucuuu cu 72
//
ID ptr-mir-30d standard; RNA; PTR; 70 BP.
XX
AC MI0002926;
XX
DE Pan troglodytes miR-30d stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751928; MIR30D.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0002617"
FT /product="ptr-miR-30d"
FT /evidence=not_experimental
FT /similarity="MI0000255"
XX
SQ Sequence 70 BP; 18 A; 16 C; 16 G; 0 T; 20 other;
guuguuguaa acauccccga cuggaagcug uaagacacag cuaagcuuuc agucagaugu 60
uugcugcuac 70
//
ID ggo-mir-30d standard; RNA; GGO; 70 BP.
XX
AC MI0002927;
XX
DE Gorilla gorilla miR-30d stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0002618"
FT /product="ggo-miR-30d"
FT /evidence=not_experimental
FT /similarity="MI0000255"
XX
SQ Sequence 70 BP; 18 A; 16 C; 16 G; 0 T; 20 other;
guuguuguaa acauccccga cuggaagcug uaagacacag cuaagcuuuc agucagaugu 60
uugcugcuac 70
//
ID mne-mir-30d standard; RNA; MNE; 70 BP.
XX
AC MI0002928;
XX
DE Macaca nemestrina miR-30d stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0002619"
FT /product="mne-miR-30d"
FT /evidence=not_experimental
FT /similarity="MI0000255"
XX
SQ Sequence 70 BP; 18 A; 16 C; 16 G; 0 T; 20 other;
guuguuguaa acauccccga cuggaagcug uaagacacag cuaagcuuuc agucagaugu 60
uugcugcuac 70
//
ID ppa-mir-30d standard; RNA; PPA; 70 BP.
XX
AC MI0002929;
XX
DE Pan paniscus miR-30d stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0002620"
FT /product="ppa-miR-30d"
FT /evidence=not_experimental
FT /similarity="MI0000255"
XX
SQ Sequence 70 BP; 18 A; 16 C; 16 G; 0 T; 20 other;
guuguuguaa acauccccga cuggaagcug uaagacacag cuaagcuuuc agucagaugu 60
uugcugcuac 70
//
ID ppa-mir-1 standard; RNA; PPA; 85 BP.
XX
AC MI0002930;
XX
DE Pan paniscus miR-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 53..73
FT /accession="MIMAT0002621"
FT /product="ppa-miR-1"
FT /evidence=not_experimental
FT /similarity="MI0000437"
XX
SQ Sequence 85 BP; 28 A; 14 C; 15 G; 0 T; 28 other;
accuacucag aguacauacu ucuuuaugua cccauaugaa cauacaaugc uauggaaugu 60
aaagaaguau guauuuuugg uaggc 85
//
ID mml-mir-181a-1 standard; RNA; MML; 110 BP.
XX
AC MI0002931;
XX
DE Macaca mulatta miR-181a-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 100315493; MIR181A-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0002506"
FT /product="mml-miR-181a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000289"
FT miRNA 64..85
FT /accession="MIMAT0002622"
FT /product="mml-miR-181a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000289"
XX
SQ Sequence 110 BP; 30 A; 24 C; 22 G; 0 T; 34 other;
ugaguuuuga gguugcuuca gugaacauuc aacgcugucg gugaguuugg aauuaaaauc 60
aaaaccaucg accguugauu guacccuaug gcuaaccauc aucuacucca 110
//
ID mml-mir-181b-1 standard; RNA; MML; 110 BP.
XX
AC MI0002932;
XX
DE Macaca mulatta miR-181b-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315384; MIR181B-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 36..59
FT /accession="MIMAT0002623"
FT /product="mml-miR-181b-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000270"
FT miRNA 79..97
FT /accession="MIMAT0026592"
FT /product="mml-miR-181b-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 110 BP; 30 A; 23 C; 25 G; 0 T; 32 other;
ccugugcaga gauuauuuuu uaaaagguca caaucaacau ucauugcugu cgguggguug 60
aacuguguag acaagcucac ugaacaauga augcaacugu ggccccgcuu 110
//
ID ptr-mir-181a-1 standard; RNA; PTR; 110 BP.
XX
AC MI0002933;
XX
DE Pan troglodytes miR-181a-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751929; MIR181A-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0002505"
FT /product="ptr-miR-181a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000289"
FT miRNA 64..85
FT /accession="MIMAT0002624"
FT /product="ptr-miR-181a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000289"
XX
SQ Sequence 110 BP; 30 A; 24 C; 22 G; 0 T; 34 other;
ugaguuuuga gguugcuuca gugaacauuc aacgcugucg gugaguuugg aauuaaaauc 60
aaaaccaucg accguugauu guacccuaug gcuaaccauc aucuacucca 110
//
ID ptr-mir-181b-1 standard; RNA; PTR; 108 BP.
XX
AC MI0002934;
XX
DE Pan troglodytes miR-181b-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751930; MIR181B-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 36..58
FT /accession="MIMAT0002625"
FT /product="ptr-miR-181b"
FT /evidence=not_experimental
FT /similarity="MI0000270"
XX
SQ Sequence 108 BP; 29 A; 23 C; 26 G; 0 T; 30 other;
ccugugcaga gauuauuuuu uaaaagguca caaucaacau ucauugcugu cgguggguug 60
aacugugugg acaagcucac ugaacaauga augcaacugu ggccccgc 108
//
ID ppy-mir-181a-1 standard; RNA; PPY; 110 BP.
XX
AC MI0002935;
XX
DE Pongo pygmaeus miR-181a-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0002626"
FT /product="ppy-miR-181a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000289"
FT miRNA 64..85
FT /accession="MIMAT0002627"
FT /product="ppy-miR-181a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000289"
XX
SQ Sequence 110 BP; 30 A; 24 C; 22 G; 0 T; 34 other;
ugaguuuuga gguugcuuca gugaacauuc aacgcugucg gugaguuugg aauuaaaauc 60
aaaaccaucg accguugauu guacccuaug gcuaaccauc aucuacucca 110
//
ID ppy-mir-181b standard; RNA; PPY; 110 BP.
XX
AC MI0002936;
XX
DE Pongo pygmaeus miR-181b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 36..58
FT /accession="MIMAT0002628"
FT /product="ppy-miR-181b"
FT /evidence=not_experimental
FT /similarity="MI0000270"
XX
SQ Sequence 110 BP; 29 A; 23 C; 27 G; 0 T; 31 other;
ccugugcaga gauuauuguu uaaaagguca caaucaacau ucauugcugu cgguggguug 60
aacugugugg acaagcucac ugaacaauga augcaacugu ggccccgcuu 110
//
ID ggo-mir-181a-1 standard; RNA; GGO; 110 BP.
XX
AC MI0002937;
XX
DE Gorilla gorilla miR-181a-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0002503"
FT /product="ggo-miR-181a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000289"
FT miRNA 64..85
FT /accession="MIMAT0002629"
FT /product="ggo-miR-181a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000289"
XX
SQ Sequence 110 BP; 29 A; 24 C; 22 G; 0 T; 35 other;
ugaguuuuga gguugcuuca gugaacauuc aacgcugucg gugaguuugg aauuaaaauc 60
aaaaccaucg accguugauu guacccuaug gcuaaccauc aucuucucca 110
//
ID ggo-mir-181b standard; RNA; GGO; 110 BP.
XX
AC MI0002938;
XX
DE Gorilla gorilla miR-181b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 36..59
FT /accession="MIMAT0002630"
FT /product="ggo-miR-181b"
FT /evidence=not_experimental
FT /similarity="MI0000270"
XX
SQ Sequence 110 BP; 29 A; 23 C; 26 G; 0 T; 32 other;
ccugugcaga gauuauuuuu uaaaagguca caaucaacau ucauugcugu cgguggguug 60
aacugugugg acaagcucac ugaacaauga augcaacugu ggccccgcuu 110
//
ID lla-mir-181a-1 standard; RNA; LLA; 110 BP.
XX
AC MI0002939;
XX
DE Lagothrix lagotricha miR-181a-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0002631"
FT /product="lla-miR-181a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000289"
FT miRNA 64..85
FT /accession="MIMAT0002632"
FT /product="lla-miR-181a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000289"
XX
SQ Sequence 110 BP; 30 A; 24 C; 22 G; 0 T; 34 other;
ugaguuuuga gguugcuuca gugaacauuc aacgcugucg gugaguuugg aauuaaaauc 60
aaaaccaucg accguugauu guacccuaug gcuaaccauc aucuacucca 110
//
ID lla-mir-181b standard; RNA; LLA; 110 BP.
XX
AC MI0002940;
XX
DE Lagothrix lagotricha miR-181b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 36..59
FT /accession="MIMAT0002633"
FT /product="lla-miR-181b"
FT /evidence=not_experimental
FT /similarity="MI0000270"
XX
SQ Sequence 110 BP; 29 A; 23 C; 26 G; 0 T; 32 other;
ccugugcaga gauuauuuuu uaaaagguca caaucaacau ucauugcugu cgguggguug 60
aacugugugg acaagcucac ugaacaauga augcaacugu ggccccgcuu 110
//
ID mne-mir-181a-1 standard; RNA; MNE; 110 BP.
XX
AC MI0002941;
XX
DE Macaca nemestrina miR-181a-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0002508"
FT /product="mne-miR-181a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000289"
FT miRNA 64..85
FT /accession="MIMAT0002634"
FT /product="mne-miR-181a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000289"
XX
SQ Sequence 110 BP; 30 A; 24 C; 22 G; 0 T; 34 other;
ugaguuuuga gguugcuuca gugaacauuc aacgcugucg gugaguuugg aauuaaaauc 60
aaaaccaucg accguugauu guacccuaug gcuaaccauc aucuacucca 110
//
ID mne-mir-181b standard; RNA; MNE; 110 BP.
XX
AC MI0002942;
XX
DE Macaca nemestrina miR-181b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 36..59
FT /accession="MIMAT0002635"
FT /product="mne-miR-181b"
FT /evidence=not_experimental
FT /similarity="MI0000270"
XX
SQ Sequence 110 BP; 30 A; 23 C; 25 G; 0 T; 32 other;
ccugugcaga gauuauuuuu uaaaagguca caaucaacau ucauugcugu cgguggguug 60
aacuguguag acaagcucac ugaacaauga augcaacugu ggccccgcuu 110
//
ID ppa-mir-181a-1 standard; RNA; PPA; 110 BP.
XX
AC MI0002943;
XX
DE Pan paniscus miR-181a-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 24..46
FT /accession="MIMAT0002504"
FT /product="ppa-miR-181a-5p"
FT /evidence=not_experimental
FT /similarity="MI0000289"
FT miRNA 64..85
FT /accession="MIMAT0002636"
FT /product="ppa-miR-181a-3p"
FT /evidence=not_experimental
FT /similarity="MI0000289"
XX
SQ Sequence 110 BP; 30 A; 24 C; 22 G; 0 T; 34 other;
ugaguuuuga gguugcuuca gugaacauuc aacgcugucg gugaguuugg aauuaaaauc 60
aaaaccaucg accguugauu guacccuaug gcuaaccauc aucuacucca 110
//
ID ppa-mir-181b standard; RNA; PPA; 110 BP.
XX
AC MI0002944;
XX
DE Pan paniscus miR-181b stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 36..59
FT /accession="MIMAT0002637"
FT /product="ppa-miR-181b"
FT /evidence=not_experimental
FT /similarity="MI0000270"
XX
SQ Sequence 110 BP; 29 A; 23 C; 26 G; 0 T; 32 other;
ccugugcaga gauuauuuuu uaaaagguca caaucaacau ucauugcugu cgguggguug 60
aacugugugg acaagcucac ugaacaauga augcaacugu ggccccgcuu 110
//
ID age-mir-15a standard; RNA; AGE; 83 BP.
XX
AC MI0002945;
XX
DE Ateles geoffroyi miR-15a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002638"
FT /product="age-miR-15a"
FT /evidence=not_experimental
FT /similarity="MI0000069"
XX
SQ Sequence 83 BP; 26 A; 13 C; 22 G; 0 T; 22 other;
ccuuggagua aaguagcagc acauaauggu uuguggauuu ugaaaaggug caggccauau 60
ugugcugccu caaaaauaca agg 83
//
ID age-mir-16 standard; RNA; AGE; 89 BP.
XX
AC MI0002946;
XX
DE Ateles geoffroyi miR-16 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002639"
FT /product="age-miR-16"
FT /evidence=not_experimental
FT /similarity="MI0000070"
XX
SQ Sequence 89 BP; 26 A; 16 C; 20 G; 0 T; 27 other;
gucagcagug ccuuagcagc acguaaauau uggcguuaag auucuaaaau uaucuccagu 60
auuaacugug cugcugaagu aagguugac 89
//
ID ggo-mir-15a standard; RNA; GGO; 83 BP.
XX
AC MI0002947;
XX
DE Gorilla gorilla miR-15a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002640"
FT /product="ggo-miR-15a"
FT /evidence=not_experimental
FT /similarity="MI0000069"
XX
SQ Sequence 83 BP; 26 A; 13 C; 22 G; 0 T; 22 other;
ccuuggagua aaguagcagc acauaauggu uuguggauuu ugaaaaggug caggccauau 60
ugugcugccu caaaaauaca agg 83
//
ID ggo-mir-16 standard; RNA; GGO; 89 BP.
XX
AC MI0002948;
XX
DE Gorilla gorilla miR-16 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002641"
FT /product="ggo-miR-16"
FT /evidence=not_experimental
FT /similarity="MI0000070"
XX
SQ Sequence 89 BP; 26 A; 16 C; 20 G; 0 T; 27 other;
gucagcagug ccuuagcagc acguaaauau uggcguuaag auucuaaaau uaucuccagu 60
auuaacugug cugcugaagu aagguugac 89
//
ID mne-mir-15a standard; RNA; MNE; 83 BP.
XX
AC MI0002949;
XX
DE Macaca nemestrina miR-15a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002642"
FT /product="mne-miR-15a"
FT /evidence=not_experimental
FT /similarity="MI0000069"
XX
SQ Sequence 83 BP; 26 A; 13 C; 22 G; 0 T; 22 other;
ccuuggagua aaguagcagc acauaauggu uuguggauuu ugaaaaggug caggccauau 60
ugugcugccu caaaaauaca agg 83
//
ID mne-mir-16 standard; RNA; MNE; 89 BP.
XX
AC MI0002950;
XX
DE Macaca nemestrina miR-16 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002643"
FT /product="mne-miR-16"
FT /evidence=not_experimental
FT /similarity="MI0000070"
XX
SQ Sequence 89 BP; 26 A; 16 C; 20 G; 0 T; 27 other;
gucagcagug ccuuagcagc acguaaauau uggcguuaag auucuaaaau uaucuccagu 60
auuaacugug cugcugaagu aagguugac 89
//
ID sla-mir-15a standard; RNA; SLA; 83 BP.
XX
AC MI0002951;
XX
DE Saguinus labiatus miR-15a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002644"
FT /product="sla-miR-15a"
FT /evidence=not_experimental
FT /similarity="MI0000069"
XX
SQ Sequence 83 BP; 26 A; 13 C; 22 G; 0 T; 22 other;
ccuuggagua aaguagcagc acauaauggu uuguggauuu ugaaaaggug caggccauau 60
ugugcugccu caaaaauaca agg 83
//
ID sla-mir-16 standard; RNA; SLA; 89 BP.
XX
AC MI0002952;
XX
DE Saguinus labiatus miR-16 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002645"
FT /product="sla-miR-16"
FT /evidence=not_experimental
FT /similarity="MI0000070"
XX
SQ Sequence 89 BP; 26 A; 16 C; 20 G; 0 T; 27 other;
gucagcagug ccuuagcagc acguaaauau uggcguuaag auucuaaaau uaucuccagu 60
auuaacugug cugcugaagu aagguugac 89
//
ID ppa-mir-15a standard; RNA; PPA; 83 BP.
XX
AC MI0002953;
XX
DE Pan paniscus miR-15a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002646"
FT /product="ppa-miR-15a"
FT /evidence=not_experimental
FT /similarity="MI0000069"
XX
SQ Sequence 83 BP; 26 A; 13 C; 22 G; 0 T; 22 other;
ccuuggagua aaguagcagc acauaauggu uuguggauuu ugaaaaggug caggccauau 60
ugugcugccu caaaaauaca agg 83
//
ID ppa-mir-16 standard; RNA; PPA; 89 BP.
XX
AC MI0002954;
XX
DE Pan paniscus miR-16 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002647"
FT /product="ppa-miR-16"
FT /evidence=not_experimental
FT /similarity="MI0000070"
XX
SQ Sequence 89 BP; 26 A; 16 C; 20 G; 0 T; 27 other;
gucagcagug ccuuagcagc acguaaauau uggcguuaag auucuaaaau uaucuccagu 60
auuaacugug cugcugaagu aagguugac 89
//
ID lca-mir-15a standard; RNA; LCA; 83 BP.
XX
AC MI0002955;
XX
DE Lemur catta miR-15a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002648"
FT /product="lca-miR-15a"
FT /evidence=not_experimental
FT /similarity="MI0000069"
XX
SQ Sequence 83 BP; 26 A; 13 C; 22 G; 0 T; 22 other;
ccuuggagua aaguagcagc acauaauggu uuguggauuu ugaaaaggug caggccauau 60
ugugcugccu caaaaauaca agg 83
//
ID lca-mir-16 standard; RNA; LCA; 74 BP.
XX
AC MI0002956;
XX
DE Lemur catta miR-16 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002649"
FT /product="lca-miR-16"
FT /evidence=not_experimental
FT /similarity="MI0000070"
XX
SQ Sequence 74 BP; 22 A; 13 C; 15 G; 0 T; 24 other;
gucagcagug ccuuagcagc acguaaauau ugguguuaag auucuaaaau uaucucuaag 60
uauuaacugu gccg 74
//
ID mml-mir-15a standard; RNA; MML; 83 BP.
XX
AC MI0002957;
XX
DE Macaca mulatta miR-15a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [2]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315145; MIR15A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002650"
FT /product="mml-miR-15a-5p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
FT /similarity="MI0000069"
FT miRNA 50..72
FT /accession="MIMAT0026593"
FT /product="mml-miR-15a-3p"
FT /evidence=experimental
FT /experiment="Illumina [2]"
XX
SQ Sequence 83 BP; 26 A; 13 C; 22 G; 0 T; 22 other;
ccuuggagua aaguagcagc acauaauggu uuguggauuu ugaaaaggug caggccauau 60
ugugcugccu caaaaauaca agg 83
//
ID mml-mir-16-1 standard; RNA; MML; 89 BP.
XX
AC MI0002958;
XX
DE Macaca mulatta miR-16-1 stem-loop
XX
RN [1]
RX PUBMED; 15345052.
RA Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P,
RA Constantine-Paton M, Horvitz HR;
RT "Microarray analysis of microRNA expression in the developing mammalian
RT brain";
RL Genome Biol. 5:R68(2004).
XX
RN [2]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
RN [3]
RX PUBMED; 23034410.
RA Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H,
RA Khaitovich P, Kaessmann H;
RT "Birth and expression evolution of mammalian microRNA genes";
RL Genome Res. 23:34-45(2013).
XX
DR ENTREZGENE; 100315146; MIR16-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [2]. The
CC expression of this mature miRNA was validated by Miska et al [1].
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002651"
FT /product="mml-miR-16-5p"
FT /evidence=experimental
FT /experiment="cloned [1], Illumina [3]"
FT /similarity="MI0000070"
FT miRNA 56..78
FT /accession="MIMAT0026594"
FT /product="mml-miR-16-1-3p"
FT /evidence=experimental
FT /experiment="Illumina [3]"
XX
SQ Sequence 89 BP; 26 A; 16 C; 20 G; 0 T; 27 other;
gucagcagug ccuuagcagc acguaaauau uggcguuaag auucuaaaau uaucuccagu 60
auuaacugug cugcugaagu aagguugac 89
//
ID ppy-mir-15a standard; RNA; PPY; 83 BP.
XX
AC MI0002959;
XX
DE Pongo pygmaeus miR-15a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002652"
FT /product="ppy-miR-15a"
FT /evidence=not_experimental
FT /similarity="MI0000069"
XX
SQ Sequence 83 BP; 26 A; 13 C; 22 G; 0 T; 22 other;
ccuuggagua aaguagcagc acauaauggu uuguggauuu ugaaaaggug caggccauau 60
ugugcugccu caaaaauaca agg 83
//
ID ppy-mir-16-1 standard; RNA; PPY; 89 BP.
XX
AC MI0002960;
XX
DE Pongo pygmaeus miR-16 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..33
FT /accession="MIMAT0002653"
FT /product="ppy-miR-16"
FT /evidence=not_experimental
FT /similarity="MI0000070"
XX
SQ Sequence 89 BP; 26 A; 16 C; 20 G; 0 T; 27 other;
gucagcagug ccuuagcagc acguaaauau uggcguuaag auucuaaaau uaucuccagu 60
auuaacugug cugcugaagu aagguugac 89
//
ID ptr-mir-15a standard; RNA; PTR; 83 BP.
XX
AC MI0002961;
XX
DE Pan troglodytes miR-15a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751931; MIR15A.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002654"
FT /product="ptr-miR-15a"
FT /evidence=not_experimental
FT /similarity="MI0000069"
XX
SQ Sequence 83 BP; 26 A; 13 C; 22 G; 0 T; 22 other;
ccuuggagua aaguagcagc acauaauggu uuguggauuu ugaaaaggug caggccauau 60
ugugcugccu caaaaauaca agg 83
//
ID ptr-mir-16-1 standard; RNA; PTR; 89 BP.
XX
AC MI0002962;
XX
DE Pan troglodytes miR-16-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
DR ENTREZGENE; 751932; MIR16-1.
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002655"
FT /product="ptr-miR-16"
FT /evidence=not_experimental
FT /similarity="MI0000070"
XX
SQ Sequence 89 BP; 26 A; 16 C; 20 G; 0 T; 27 other;
gucagcagug ccuuagcagc acguaaauau uggcguuaag auucuaaaau uaucuccagu 60
auuaacugug cugcugaagu aagguugac 89
//
ID lla-mir-15a standard; RNA; LLA; 83 BP.
XX
AC MI0002963;
XX
DE Lagothrix lagotricha miR-15a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002656"
FT /product="lla-miR-15a"
FT /evidence=not_experimental
FT /similarity="MI0000069"
XX
SQ Sequence 83 BP; 26 A; 13 C; 22 G; 0 T; 22 other;
ccuuggagua aaguagcagc acauaauggu uuguggauuu ugaaaaggug caggccauau 60
ugugcugccu caaaaauaca agg 83
//
ID lla-mir-16 standard; RNA; LLA; 89 BP.
XX
AC MI0002964;
XX
DE Lagothrix lagotricha miR-16 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..35
FT /accession="MIMAT0002657"
FT /product="lla-miR-16"
FT /evidence=not_experimental
FT /similarity="MI0000070"
XX
SQ Sequence 89 BP; 25 A; 17 C; 21 G; 0 T; 26 other;
gucagcagug ccuuagcagc acguaaauau uggcgcuaag auucuaaaau uaucuccagu 60
auuaacugug cugcugaagu aagguuggc 89
//
ID ggo-mir-17 standard; RNA; GGO; 84 BP.
XX
AC MI0002965;
XX
DE Gorilla gorilla miR-17 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..37
FT /accession="MIMAT0002658"
FT /product="ggo-miR-17-5p"
FT /evidence=not_experimental
FT /similarity="MI0000071"
FT miRNA 51..70
FT /accession="MIMAT0002659"
FT /product="ggo-miR-17-3p"
FT /evidence=not_experimental
FT /similarity="MI0000071"
XX
SQ Sequence 84 BP; 24 A; 13 C; 23 G; 0 T; 24 other;
gucagaauaa ugucaaagug cuuacagugc agguagugau augugcaucu acugcaguga 60
aggcacuugu agcauuaugg ugac 84
//
ID ggo-mir-18a standard; RNA; GGO; 71 BP.
XX
AC MI0002966;
XX
DE Gorilla gorilla miR-18 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0002660"
FT /product="ggo-miR-18a"
FT /evidence=not_experimental
FT /similarity="MI0000072"
XX
SQ Sequence 71 BP; 17 A; 15 C; 17 G; 0 T; 22 other;
uguucuaagg ugcaucuagu gcagauagug aaguagauua gcaucuacug cccuaagugc 60
uccuucuggc a 71
//
ID ggo-mir-19a standard; RNA; GGO; 82 BP.
XX
AC MI0002967;
XX
DE Gorilla gorilla miR-19a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..71
FT /accession="MIMAT0002661"
FT /product="ggo-miR-19a"
FT /evidence=not_experimental
FT /similarity="MI0000073"
XX
SQ Sequence 82 BP; 22 A; 15 C; 20 G; 0 T; 25 other;
gcaguccucu guuaguuuug cauaguugca cuacaagaag aauguaguug ugcaaaucua 60
ugcaaaacug augguggccu gc 82
//
ID ggo-mir-20a standard; RNA; GGO; 71 BP.
XX
AC MI0002968;
XX
DE Gorilla gorilla miR-20 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0002662"
FT /product="ggo-miR-20a"
FT /evidence=not_experimental
FT /similarity="MI0000076"
XX
SQ Sequence 71 BP; 20 A; 11 C; 16 G; 0 T; 24 other;
guagcacuaa agugcuuaua gugcagguag uguuuaguua ucuacugcau uaugagcacu 60
uaaaguacug c 71
//
ID ggo-mir-19b-1 standard; RNA; GGO; 87 BP.
XX
AC MI0002969;
XX
DE Gorilla gorilla miR-19b-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..76
FT /accession="MIMAT0002663"
FT /product="ggo-miR-19b"
FT /evidence=not_experimental
FT /similarity="MI0000074"
XX
SQ Sequence 87 BP; 18 A; 16 C; 22 G; 0 T; 31 other;
cacuguucua ugguuaguuu ugcagguuug cauccagcug ugugauauuc ugcugugcaa 60
auccaugcaa aacugacugu gguagug 87
//
ID ggo-mir-92-1 standard; RNA; GGO; 78 BP.
XX
AC MI0002970;
XX
DE Gorilla gorilla miR-92-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 48..69
FT /accession="MIMAT0002664"
FT /product="ggo-miR-92"
FT /evidence=not_experimental
FT /similarity="MI0000093"
XX
SQ Sequence 78 BP; 10 A; 15 C; 23 G; 0 T; 30 other;
cuuucuacac agguugggau cgguugcaau gcuguguuuc uguaugguau ugcacuuguc 60
ccggccuguu gaguuugg 78
//
ID lca-mir-17 standard; RNA; LCA; 84 BP.
XX
AC MI0002971;
XX
DE Lemur catta miR-17 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..37
FT /accession="MIMAT0002665"
FT /product="lca-miR-17-5p"
FT /evidence=not_experimental
FT /similarity="MI0000071"
FT miRNA 51..70
FT /accession="MIMAT0002666"
FT /product="lca-miR-17-3p"
FT /evidence=not_experimental
FT /similarity="MI0000071"
XX
SQ Sequence 84 BP; 24 A; 13 C; 23 G; 0 T; 24 other;
gucagaauaa ugucaaagug cuuacagugc agguagugau augugcaucu acugcaguga 60
aggcacuugu agcauuaugg ugac 84
//
ID lca-mir-18 standard; RNA; LCA; 71 BP.
XX
AC MI0002972;
XX
DE Lemur catta miR-18 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0002667"
FT /product="lca-miR-18"
FT /evidence=not_experimental
FT /similarity="MI0000072"
XX
SQ Sequence 71 BP; 17 A; 15 C; 17 G; 0 T; 22 other;
uguucuaagg ugcaucuagu gcagauagug aaguagauua gcaucuacug cccuaagugc 60
uccuucuggc a 71
//
ID lca-mir-19a standard; RNA; LCA; 82 BP.
XX
AC MI0002973;
XX
DE Lemur catta miR-19a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..71
FT /accession="MIMAT0002668"
FT /product="lca-miR-19a"
FT /evidence=not_experimental
FT /similarity="MI0000073"
XX
SQ Sequence 82 BP; 22 A; 15 C; 20 G; 0 T; 25 other;
gcaguccucu guuaguuuug cauaguugca cuacaagaag aauguaguug ugcaaaucua 60
ugcaaaacug augguggccu gc 82
//
ID lca-mir-20 standard; RNA; LCA; 71 BP.
XX
AC MI0002974;
XX
DE Lemur catta miR-20 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0002669"
FT /product="lca-miR-20"
FT /evidence=not_experimental
FT /similarity="MI0000076"
XX
SQ Sequence 71 BP; 20 A; 12 C; 16 G; 0 T; 23 other;
guagcacuaa agugcuuaua gugcagguag uguuuaguua ucuacugcau caugagcacu 60
uaaaguacug c 71
//
ID lca-mir-19b-1 standard; RNA; LCA; 87 BP.
XX
AC MI0002975;
XX
DE Lemur catta miR-19b-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..76
FT /accession="MIMAT0002670"
FT /product="lca-miR-19b"
FT /evidence=not_experimental
FT /similarity="MI0000074"
XX
SQ Sequence 87 BP; 19 A; 16 C; 21 G; 0 T; 31 other;
cacuguucua ugguuaguuu ugcagguuug cauccagcug uguaauauuc ugcugugcaa 60
auccaugcaa aacugacugu gguagug 87
//
ID lca-mir-92-1 standard; RNA; LCA; 78 BP.
XX
AC MI0002976;
XX
DE Lemur catta miR-92-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 48..69
FT /accession="MIMAT0002671"
FT /product="lca-miR-92"
FT /evidence=not_experimental
FT /similarity="MI0000093"
XX
SQ Sequence 78 BP; 10 A; 15 C; 23 G; 0 T; 30 other;
cuuucuacac agguugggau cgguugcaau gcuguguuuc uguaugguau ugcacuuguc 60
ccggccuguu gaguuugg 78
//
ID age-mir-17 standard; RNA; AGE; 84 BP.
XX
AC MI0002977;
XX
DE Ateles geoffroyi miR-17 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..37
FT /accession="MIMAT0002672"
FT /product="age-miR-17-5p"
FT /evidence=not_experimental
FT /similarity="MI0000071"
FT miRNA 51..70
FT /accession="MIMAT0002673"
FT /product="age-miR-17-3p"
FT /evidence=not_experimental
FT /similarity="MI0000071"
XX
SQ Sequence 84 BP; 24 A; 13 C; 23 G; 0 T; 24 other;
gucagaauaa ugucaaagug cuuacagugc agguagugau augugcaucu acugcaguga 60
aggcacuugu agcauuaugg ugac 84
//
ID age-mir-18 standard; RNA; AGE; 71 BP.
XX
AC MI0002978;
XX
DE Ateles geoffroyi miR-18 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0002674"
FT /product="age-miR-18"
FT /evidence=not_experimental
FT /similarity="MI0000072"
XX
SQ Sequence 71 BP; 17 A; 15 C; 17 G; 0 T; 22 other;
uguucuaagg ugcaucuagu gcagauagug aaguagauua gcaucuacug cccuaagugc 60
uccuucuggc a 71
//
ID age-mir-19a standard; RNA; AGE; 82 BP.
XX
AC MI0002979;
XX
DE Ateles geoffroyi miR-19a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..71
FT /accession="MIMAT0002675"
FT /product="age-miR-19a"
FT /evidence=not_experimental
FT /similarity="MI0000073"
XX
SQ Sequence 82 BP; 21 A; 16 C; 20 G; 0 T; 25 other;
gcaguccucu guuaguuuug cauaguugca cuacaagaag cauguaguug ugcaaaucua 60
ugcaaaacug augguggccu gc 82
//
ID age-mir-20 standard; RNA; AGE; 71 BP.
XX
AC MI0002980;
XX
DE Ateles geoffroyi miR-20 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0002676"
FT /product="age-miR-20"
FT /evidence=not_experimental
FT /similarity="MI0000076"
XX
SQ Sequence 71 BP; 20 A; 11 C; 16 G; 0 T; 24 other;
guagcacuaa agugcuuaua gugcagguag uguuuaguua ucuacugcau uaugagcacu 60
uaaaguacug c 71
//
ID age-mir-19b-1 standard; RNA; AGE; 87 BP.
XX
AC MI0002981;
XX
DE Ateles geoffroyi miR-19b-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..76
FT /accession="MIMAT0002677"
FT /product="age-miR-19b"
FT /evidence=not_experimental
FT /similarity="MI0000074"
XX
SQ Sequence 87 BP; 18 A; 16 C; 22 G; 0 T; 31 other;
cacuguucua ugguuaguuu ugcagguuug cauccagcug ugugauauuc ugcugugcaa 60
auccaugcaa aacugacugu gguagug 87
//
ID age-mir-92-1 standard; RNA; AGE; 78 BP.
XX
AC MI0002982;
XX
DE Ateles geoffroyi miR-92-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 48..69
FT /accession="MIMAT0002678"
FT /product="age-miR-92"
FT /evidence=not_experimental
FT /similarity="MI0000093"
XX
SQ Sequence 78 BP; 10 A; 15 C; 23 G; 0 T; 30 other;
cuuucuacac agguugggau cgguugcaau gcuguguuuc uguaugguau ugcacuuguc 60
ccggccuguu gaguuugg 78
//
ID ppa-mir-17 standard; RNA; PPA; 84 BP.
XX
AC MI0002983;
XX
DE Pan paniscus miR-17 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..37
FT /accession="MIMAT0002679"
FT /product="ppa-miR-17-5p"
FT /evidence=not_experimental
FT /similarity="MI0000071"
FT miRNA 51..70
FT /accession="MIMAT0002680"
FT /product="ppa-miR-17-3p"
FT /evidence=not_experimental
FT /similarity="MI0000071"
XX
SQ Sequence 84 BP; 24 A; 13 C; 23 G; 0 T; 24 other;
gucagaauaa ugucaaagug cuuacagugc agguagugau augugcaucu acugcaguga 60
aggcacuugu agcauuaugg ugac 84
//
ID ppa-mir-18 standard; RNA; PPA; 71 BP.
XX
AC MI0002984;
XX
DE Pan paniscus miR-18 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 6..27
FT /accession="MIMAT0002681"
FT /product="ppa-miR-18"
FT /evidence=not_experimental
FT /similarity="MI0000072"
XX
SQ Sequence 71 BP; 17 A; 15 C; 17 G; 0 T; 22 other;
uguucuaagg ugcaucuagu gcagauagug aaguagauua gcaucuacug cccuaagugc 60
uccuucuggc a 71
//
ID ppa-mir-19a standard; RNA; PPA; 82 BP.
XX
AC MI0002985;
XX
DE Pan paniscus miR-19a stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 49..71
FT /accession="MIMAT0002682"
FT /product="ppa-miR-19a"
FT /evidence=not_experimental
FT /similarity="MI0000073"
XX
SQ Sequence 82 BP; 22 A; 15 C; 20 G; 0 T; 25 other;
gcaguccucu guuaguuuug cauaguugca cuacaagaag aauguaguug ugcaaaucua 60
ugcaaaacug augguggccu gc 82
//
ID ppa-mir-20 standard; RNA; PPA; 71 BP.
XX
AC MI0002986;
XX
DE Pan paniscus miR-20 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 8..29
FT /accession="MIMAT0002683"
FT /product="ppa-miR-20"
FT /evidence=not_experimental
FT /similarity="MI0000076"
XX
SQ Sequence 71 BP; 20 A; 11 C; 16 G; 0 T; 24 other;
guagcacuaa agugcuuaua gugcagguag uguuuaguua ucuacugcau uaugagcacu 60
uaaaguacug c 71
//
ID ppa-mir-19b-1 standard; RNA; PPA; 87 BP.
XX
AC MI0002987;
XX
DE Pan paniscus miR-19b-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 54..76
FT /accession="MIMAT0002684"
FT /product="ppa-miR-19b"
FT /evidence=not_experimental
FT /similarity="MI0000074"
XX
SQ Sequence 87 BP; 18 A; 16 C; 22 G; 0 T; 31 other;
cacuguucua ugguuaguuu ugcagguuug cauccagcug ugugauauuc ugcugugcaa 60
auccaugcaa aacugacugu gguagug 87
//
ID ppa-mir-92a-1 standard; RNA; PPA; 78 BP.
XX
AC MI0002988;
XX
DE Pan paniscus miR-92a-1 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 48..69
FT /accession="MIMAT0002685"
FT /product="ppa-miR-92a"
FT /evidence=not_experimental
FT /similarity="MI0000093"
XX
SQ Sequence 78 BP; 10 A; 15 C; 23 G; 0 T; 30 other;
cuuucuacac agguugggau cgguugcaau gcuguguuuc uguaugguau ugcacuuguc 60
ccggccuguu gaguuugg 78
//
ID ppy-mir-17 standard; RNA; PPY; 84 BP.
XX
AC MI0002989;
XX
DE Pongo pygmaeus miR-17 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
CC sequence to amplify miRNA precursor regions in primates [1]. The
CC expression of the mature miRNA was not validated.
XX
FH Key Location/Qualifiers
FH
FT miRNA 14..37
FT /accession="MIMAT0002686"
FT /product="ppy-miR-17-5p"
FT /evidence=not_experimental
FT /similarity="MI0000071"
FT miRNA 51..70
FT /accession="MIMAT0002687"
FT /product="ppy-miR-17-3p"
FT /evidence=not_experimental
FT /similarity="MI0000071"
XX
SQ Sequence 84 BP; 24 A; 14 C; 23 G; 0 T; 23 other;
gucagaauaa ugucaaagug cuuacagugc agguagugau acgugcaucu acugcaguga 60
aggcacuugu agcauuaugg ugac 84
//
ID ppy-mir-18a standard; RNA; PPY; 71 BP.
XX
AC MI0002990;
XX
DE Pongo pygmaeus miR-18 stem-loop
XX
RN [1]
RX PUBMED; 15652478.
RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E;
RT "Phylogenetic shadowing and computational identification of human microRNA
RT genes";
RL Cell. 120:21-24(2005).
XX
CC Berezikov et al. used primers designed from human miRNA gene flanking
C