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2 publications mentioning tca-mir-309c

Open access articles that are associated with the species Tribolium castaneum and mention the gene name mir-309c. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 27
The expression pattern of Mir-309 in D. virilis showed a peak at 13–20% of development (Fig. 4b), similar to that seen for B. germanica, whereas in T. castaneum, Mir-309 expression increased at 6–11% of development and then remained more or less stable until the end of embryogenesis (Fig. 4b). [score:6]
In B. germanica, an acute expression peak of the Mir-309 cluster miRNAs (which comprises four Mir-309 paralogs) is observed at ED2 (11% of development), which might be involved in maternal mRNA clearance. [score:4]
The expression of Mir-309 followed a CoMod-B pattern, showing an acute peak in ED2 (at 11% of development) (Fig. 4b). [score:3]
In D. melanogaster, maternal mRNA clearing has been associated with the Mir-309 cluster, which includes Mir-9/4/79, Mir-5/6/2944, Mir-3/309 and Mir-279/286, which are mainly expressed between 9 and 12% of embryo development [21]. [score:3]
The libraries were prepared at 1.85%, 0–3.5% and 0–6.67% of development in B. germanica (bge), T. castaneum (tca) and D. virilis (dvi), respectively The present results indicate the embryonic presence of the MIR-309 family of miRNAs in B. germanica, plus 54 novel miRNAs [10, 11]. [score:2]
b Expression of MIR-309 miRNAs compared to that seen in T. castaneum and D. virilis. [score:2]
Four of these belonged to the MIR-309 family (Fig.   1a), which is typical of insects [11] and that in D. melanogaster is involved in the clearance of maternally loaded mRNAs [21]. [score:1]
The present results indicate the embryonic presence of the MIR-309 family of miRNAs in B. germanica, plus 54 novel miRNAs [10, 11]. [score:1]
The identification of B. germanica embryo small RNA sequences unveiled miRNAs not detected in previous studies, such as those of the MIR-309 family and 54 novel miRNAs. [score:1]
As seen for other B. germanica miRNAs [11], most of those reported herein for the first time grouped into genomic clusters, e. g., into the MIR-309 family (Fig. 1b). [score:1]
a Precursor sequences of the MIR-309 miRNAs in B. germanica, T. castaneum, D. melanogaster and D. virilis. [score:1]
Taken together, these data suggest that maternal RNA clearing would involve two successive processes, the first (taking place around ED0-ED1), in which maternal adenylated miRNAs would be degraded, and the second (in ED2), in which maternal mRNAs would be cleared by the activity of Mir-309 and associated scavenger miRNAs. [score:1]
The second wave defined the boundaries of maternal-to-zygotic transition, with maternal mRNAs being cleared, presumably by Mir-309 and associated scavenger miRNAs. [score:1]
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2
[+] score: 2
Other miRNAs from this paper: dme-mir-2a-1, dme-mir-2a-2, dme-mir-2b-1, dme-mir-2b-2, dme-mir-9a, dme-mir-10, dme-mir-12, dme-mir-13a, dme-mir-13b-1, dme-mir-13b-2, dme-mir-276a, dme-mir-133, dme-mir-276b, dme-mir-210, dme-mir-31b, dme-mir-9c, dme-mir-306, dme-mir-9b, dme-mir-31a, dme-mir-309, dme-mir-316, dme-mir-317, dme-mir-2c, ame-mir-12, ame-mir-133, ame-mir-210, ame-mir-276, ame-mir-2-1, ame-mir-2-2, ame-mir-317, ame-mir-9a, ame-mir-9b, bmo-mir-9a, bmo-mir-10, bmo-mir-276, bmo-mir-31, bmo-mir-71, ame-mir-10, ame-mir-137, ame-mir-13a, ame-mir-2-3, ame-mir-29b, ame-mir-31a, ame-mir-375, ame-mir-71, ame-mir-932, dme-mir-193, dme-mir-375, dme-mir-932, dme-mir-970, dme-mir-971, dme-mir-989, dme-mir-137, dme-mir-1006, dme-mir-1007, bmo-mir-2a-1, bmo-mir-2a-2, bmo-mir-2b, bmo-mir-13a, bmo-mir-13b, bmo-mir-133, bmo-mir-210, bmo-mir-317, tca-mir-2-3, tca-mir-2-1, tca-mir-2-2, tca-mir-10, tca-mir-12, tca-mir-13a, tca-mir-13b, tca-mir-31, tca-mir-71, tca-mir-133, tca-mir-137, tca-mir-210, tca-mir-276, tca-mir-317, tca-mir-932, tca-mir-9b, bmo-mir-12, bmo-mir-137, bmo-mir-932, bmo-mir-9b, tca-mir-9a, tca-mir-970, ame-mir-13b, ame-mir-1006, ame-mir-316, bmo-mir-970, lmi-mir-276, lmi-mir-210, lmi-mir-10, lmi-mir-9a, bmo-mir-9c, bmo-mir-306a, bmo-mir-989a, bmo-mir-316, bmo-mir-1175, bmo-mir-9d, bmo-mir-750, bmo-mir-375, bmo-mir-306b, api-mir-137, api-mir-10, api-mir-276, api-mir-13a, api-mir-210, api-mir-29, api-mir-2a, api-mir-2b, api-mir-2c, api-mir-316, api-mir-317, api-mir-71, api-mir-971, api-mir-9a, api-mir-9b, api-mir-306, api-mir-3049, bmo-mir-989b, ame-mir-1175, ame-mir-193, ame-mir-989, ame-mir-3049, ame-mir-971, ame-mir-3770, ame-mir-9c, ame-mir-306, ame-mir-750, tca-mir-9c, tca-mir-316, tca-mir-9d, tca-mir-309a, tca-mir-3049, tca-mir-375, tca-mir-29, tca-mir-1175, tca-mir-750, tca-mir-989, tca-mir-309b, tca-mir-193, tca-mir-6012, tca-mir-9e, ame-mir-6037, ame-mir-6012, ame-mir-2b, tca-mir-971b
Two miRNA families expected to be present were not found: MIR-36, which emerged with protostomes, and MIR-309, which emerged with pancrustaceans 6). [score:1]
From these 62 miRNA families, it is apparent the loss of MIR-309 in the branch leading to the paraneopteran A. pisum. [score:1]
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