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7 publications mentioning tae-MIR5049

Open access articles that are associated with the species Triticum aestivum and mention the gene name MIR5049. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

[+] score: 7
In addition, the terms “regulation of flower development” [such as the targets of tae-miR167a (Traes_2DL_8434C0251), tae-miR1130b-3p (Traes_2DL_DA1A74C0D) and tae-miR156 (Traes_2BS_186EA570A)] and “recognition of pollen” [such as the targets of tae-miR1122b-3p (Traes_1DS_7868656E4.1) and tae-miR5049-3p (Traes_2AL_2A541092D. [score:7]
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[+] score: 7
Additionally, miR390, miR5071, miR2118, miR9863 and miR7757 were predicted to target the Leucine-rich Repeat Receptor-like protein kinase family (LRR) that are involved in disease resistance [53, 54], as well as miR1120, miR1127, miR1130, miR1137, miR1439, miR5049, miR5062, and miR9673 that regulated the WD domain gene for flower development and the immune system [55– 57] (Additional file 1: Table S7). [score:7]
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[+] score: 6
Functional annotation of these target transcripts revealed various molecular functions, including transporter activity (miR1131), protein kinase activity (miR1137/miR1439/miR5205), ligase activity (miR5180), hydrolase activity (miR5568/miR6197/miR6224), oxidoreductase activity (miR1118/miR1439/miR5205), RNA binding (miR1125/miR5205) and drug resistance (miR482/miR5049). [score:3]
Several others indicated roles in response to stress conditions, such as salt (miR5049/miR5205/ miR5568/miR6220; gb|EMT32034.1) and heat (miR5049/miR5205/miR6248; gb|EMT11495.1). [score:1]
miRNA names EST miR1117 gi|44888773|gb|AY534123.1|SEG_AY534122S2, gi| 442614136|gb|JX295577.1|, gi| 219814405| gb| FJ436986.1| miR1118 gi| 442614136|gb|JX295577.1| miR1120 gi|442614136|gb|JX295577.1| miR1125 gi|442614136|gb|JX295577.1| miR1128 Contig94874 miR1130 gi|300689672|gb|FJ898281.1|, gi|300689671|gb|FJ898280.1|, gi|300689650|gb|FJ898269.1| miR1135 AEGTA02478, Contig23917 miR1136 gi|22038180|gb|AY013754.1|, Contig23917, AEGTA02478 miR1436 gi|442614136|gb|JX295577.1| miR1439 gi|442614136|gb|JX295577.1| miR437 gi|13447949|gb|AF338431.1|AF338431, gi|13447949|gb|AF338431.1|AF338431 miR5049 Contig115885, Contig29895 miR5064 AEGTA07380 miR5086 gi|21779916|gb|AF497474.1| miR5174 Gb|JX295577.1, gb|GU211253.1 miR5180 Contig22176Hit names starting with “gi” were derived from NCBI A. tauschii (taxid:37682) EST database, while the others were derived from the transcriptome assembly of a recent study (Jia et al., 2013). [score:1]
Of the assembly-predicted miRNAs, miR5049 was found to be the most predominant, accounting for 16.31% of the overall representation, while 52 miRNA families contributed less than 1% each to the overall representation (Figure 4A). [score:1]
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[+] score: 2
Other miRNAs from this paper: osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR395b, osa-MIR395d, osa-MIR395e, osa-MIR395g, osa-MIR395h, osa-MIR395i, osa-MIR395j, osa-MIR395k, osa-MIR395l, osa-MIR395s, osa-MIR395t, osa-MIR395c, osa-MIR395a, osa-MIR395f, osa-MIR395u, osa-MIR398a, osa-MIR398b, osa-MIR160e, osa-MIR160f, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR167j, osa-MIR437, osa-MIR395m, osa-MIR395n, osa-MIR395o, osa-MIR395p, osa-MIR395q, osa-MIR395v, osa-MIR395w, osa-MIR395r, osa-MIR818a, osa-MIR818b, osa-MIR818c, osa-MIR818d, osa-MIR818e, tae-MIR160, tae-MIR167a, tae-MIR1117, tae-MIR1118, tae-MIR1120a, tae-MIR1122a, tae-MIR1125, tae-MIR1127a, tae-MIR1128, tae-MIR1131, tae-MIR1133, tae-MIR1135, tae-MIR1136, tae-MIR1139, osa-MIR169r, osa-MIR1436, osa-MIR1439, osa-MIR2118a, osa-MIR2118b, osa-MIR2118c, osa-MIR2118d, osa-MIR2118e, osa-MIR2118f, osa-MIR2118g, osa-MIR2118h, osa-MIR2118i, osa-MIR2118j, osa-MIR2118k, osa-MIR2118l, osa-MIR2118m, osa-MIR2118n, osa-MIR2118o, osa-MIR2118p, osa-MIR2118q, osa-MIR2118r, bdi-MIR167a, bdi-MIR1139, bdi-MIR1122, bdi-MIR437, bdi-MIR169b, bdi-MIR1127, bdi-MIR1135, osa-MIR395x, osa-MIR395y, tae-MIR167b, tae-MIR169, tae-MIR395a, tae-MIR395b, tae-MIR398, tae-MIR5085, bdi-MIR5070, bdi-MIR169d, bdi-MIR169i, bdi-MIR395a, bdi-MIR169j, bdi-MIR160a, bdi-MIR395b, bdi-MIR167b, bdi-MIR160b, bdi-MIR167c, bdi-MIR169k, bdi-MIR160c, bdi-MIR167d, bdi-MIR169g, bdi-MIR160d, bdi-MIR160e, bdi-MIR169e, bdi-MIR398a, bdi-MIR169a, bdi-MIR169h, bdi-MIR169c, bdi-MIR395c, bdi-MIR5180b, bdi-MIR5175a, bdi-MIR5175b, bdi-MIR395d, bdi-MIR398b, bdi-MIR5180a, bdi-MIR169f, bdi-MIR395m, bdi-MIR395e, bdi-MIR395f, bdi-MIR395g, bdi-MIR395h, bdi-MIR395j, bdi-MIR395k, bdi-MIR395l, bdi-MIR395n, osa-MIR818f, bdi-MIR167e, bdi-MIR395o, bdi-MIR395p, bdi-MIR5049, bdi-MIR160f, bdi-MIR167f, bdi-MIR167g, bdi-MIR169l, bdi-MIR169m, bdi-MIR169n, bdi-MIR395q, bdi-MIR2118a, bdi-MIR2118b, tae-MIR1122b, tae-MIR1127b, tae-MIR1122c, tae-MIR167c, tae-MIR5175, tae-MIR1120b, tae-MIR1120c, tae-MIR6197
5D miRNAs with the highest apparent representation (over 100 copies) were miR1117, miR1120, miR1139, miR1436, miR5049 in 5DS; miR1117, miR1120, miR1122, miR1131, miR1135, miR1136, miR1436, miR5049 in 5DL (Data S3; Table 1). [score:1]
Chr1 Chr2 Chr3 Chr4 Chr5 miR1127 * miR1128 * * * * * miR1133 * miR1135 * miR1139 * * * miR1439 * * * * * miR167 * miR395 * * miR5049 * * * * * miR5175 * * * miR5180 * * * miR5203 * * * * Bold miRNAs gave the best results that they were syntenic to Bd4. [score:1]
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[+] score: 1
Of these miR437, miR2118, miR2905, miR5049, miR5050, miR5075 & miR5200 have not previously been reported from wheat EST sequences, while miR399k is also a new representative of the miR399 family. [score:1]
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[+] score: 1
durum and dicocoides –Akpinar et al. 2015 miR5049 H. vulgare –Hackenberg et al. 2014 miR528 T. turgidum ssp. [score:1]
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[+] score: 1
Interestingly, wheat has several less-conserved miRNAs which were reported previously only in monocots, such as miR5054, miR5062, miR5064, miR5200, miR5203 in Brachypodium distachyon [40], miR5049, miR5048, miR6191, miR6203 in Hordeum vulgare [23, 41], miR1318, miR5071, miR5072, miR5073, miR5077, miR5082, miR5083, miR5538, miR818 in Oryza sativa [42], miR1125, miR1127, miR1136 in wheat [18]. [score:1]
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