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8 publications mentioning stu-MIR482b

Open access articles that are associated with the species Solanum tuberosum and mention the gene name MIR482b. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 74
miRNA Gene ID Annotation stu-miR482a-3p PGSC0003DMG400020935 TMV resistance protein stu-miR482b-3p PGSC0003DMG402002428 TMV resistance protein PGSC0003DMG400013543 TMV resistance protein PGSC0003DMG400015693 TMV resistance protein stu-miR482c PGSC0003DMG402026432 Disease resistance protein stu-miR482d-3p PGSC0003DMG400011527 Disease resistance protein RPP13 PGSC0003DMG400002980 Disease resistance protein RPP13 PGSC0003DMG400006531 Disease resistance protein RPP13 PGSC0003DMG400009455 Disease resistance RPP13 PGSC0003DMG400024430 Disease resistance protein RPP13 PGSC0003DMG400011527 Disease resistance protein RPP13 stu-miR482e-3p PGSC0003DMG400027407 Disease resistance protein RPP13 PGSC0003DMG400013090 TMV resistance protein PGSC0003DMG400029415 TMV resistance protein PGSC0003DMG400044837 TMV resistance protein stu-miR6024-3p PGSC0003DMG400019913 Disease resistance protein RPP13 stu-miR6025 PGSC0003DMG400018441 Putative late blight resistance protein stu-miR6027 PGSC0003DMG400011898 Putative late blight resistance protein PGSC0003DMG400016600 Tospovirus resistance protein E PGSC0003DMG400006581 Putative late blight resistance protein PGSC0003DMG402032547 Disease resistance protein RPP13 stu-miR8038a-3p PGSC0003DMG400009455 Disease resistance protein RPP13 stu-miR8038b-3p PGSC0003DMG400009455 Disease resistance protein RPP13 A comparison of the expression level of miRNAs and mRNAs revealed miRNA-mRNA interactions during the PVA infection (Fig.   8 and Table  S9). [score:27]
miRNA Gene ID Annotation stu-miR482a-3p PGSC0003DMG400020935 TMV resistance protein stu-miR482b-3p PGSC0003DMG402002428 TMV resistance protein PGSC0003DMG400013543 TMV resistance protein PGSC0003DMG400015693 TMV resistance protein stu-miR482c PGSC0003DMG402026432 Disease resistance protein stu-miR482d-3p PGSC0003DMG400011527 Disease resistance protein RPP13 PGSC0003DMG400002980 Disease resistance protein RPP13 PGSC0003DMG400006531 Disease resistance protein RPP13 PGSC0003DMG400009455 Disease resistance RPP13 PGSC0003DMG400024430 Disease resistance protein RPP13 PGSC0003DMG400011527 Disease resistance protein RPP13 stu-miR482e-3p PGSC0003DMG400027407 Disease resistance protein RPP13 PGSC0003DMG400013090 TMV resistance protein PGSC0003DMG400029415 TMV resistance protein PGSC0003DMG400044837 TMV resistance protein stu-miR6024-3p PGSC0003DMG400019913 Disease resistance protein RPP13 stu-miR6025 PGSC0003DMG400018441 Putative late blight resistance protein stu-miR6027 PGSC0003DMG400011898 Putative late blight resistance protein PGSC0003DMG400016600 Tospovirus resistance protein E PGSC0003DMG400006581 Putative late blight resistance protein PGSC0003DMG402032547 Disease resistance protein RPP13 stu-miR8038a-3p PGSC0003DMG400009455 Disease resistance protein RPP13 stu-miR8038b-3p PGSC0003DMG400009455 Disease resistance protein RPP13 A comparison of the expression level of miRNAs and mRNAs revealed miRNA-mRNA interactions during the PVA infection (Fig.   8 and Table  S9). [score:27]
In particularly, the expression level of the three miRNAs (stu-miR156a, stu-miR397-5p and stu-miR482-3p) were low at 60hpi, while their target genes were up-regulated (Fig.   10). [score:8]
Ten conserved miRNAs (stu-miR482a-3p and stu-miR482b-3p, etc) targeted the disease resistance genes, including TMV resistance protein, disease resistance protein and late blight resistance protein (Table  5). [score:7]
Besides the miR482 family (stu-miR482a/b/d/e-3p and stu-miR482c), other miRNAs including stu-miR6024-3p, stu-miR6025, stu-miR6027 and stu-miR8038a-3p also targeted the disease resistance protein (Tables  5 and S8), indicating that these miRNAs may be involved in response to PVA. [score:5]
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2
[+] score: 49
Therefore, the collective regulation by miR482, miR6024 as well as tasiRNAs triggered by them may control the expression level of I2 homologues in Solanaceae, and the down-regulation of the I2 homologues by these miRNAs may make the expansion of I2 homologues less costly in fitness. [score:7]
Therefore, the I2 homologues from tomato are targeted by miR6024 and may not be targeted by miR482. [score:5]
In addition to the miR482 family targeting I2 homologues in potato [33], we identified and confirmed that miR6024 targets I2 family in tomato. [score:5]
The miR482 family has high expression level in three tissues of potato (leaf, flower and stolon) (five members, with an average of 35,760 reads per million), while miR6024 family has a much lower expression in tomato (leaf, flower and fruit) (2,540 reads per million). [score:5]
We hypothesized that miR6024 and miR482 might have facilitated the expansion of the I2 family in Solanaceae species, since they can minimize their potential toxic effects by down -regulating their expression. [score:4]
Identification of miRNAs for the I2homologuesThe resistance gene R3a from potato was shown to be targeted by members of 22-nt miR482 family [33]. [score:3]
The resistance gene R3a from potato was shown to be targeted by members of 22-nt miR482 family [33]. [score:3]
Previous study showed that I2 homologues in potato were targeted by miR482. [score:3]
However, our data showed that I2 homologues in tomato were targeted by miR6024 rather than miR482. [score:3]
However, no cleavage product was detected at the predicted target site of miR482. [score:3]
Computational analysis showed that I2 homologues from tomato may also be targeted by miR482 family, which has about 380 reads per million from three tissues (leaf, flower and fruit) of tomato (miRbase release 20). [score:3]
Whether the I2 family from tomato is regulated by miR482 or other miRNAs remains unknown. [score:2]
However, no cleavage of I2 homologues by miR482 was confirmed in tomato though the miR482 does exist in tomato genome. [score:1]
MiR482 was shown to be an ancient miRNA [64]. [score:1]
The resistance gene R3a from potato was shown to be cleaved by 22-nt miR482 family and produce phasiRNA [33]. [score:1]
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3
[+] score: 19
In our study, however, the one regulated member of the miR482 family (miR482e) targeting NBS-LRR transcripts was upregulated following PVY [NTN] infection (Dataset S1), similarly as observed in the establishment of mutualistic symbiosis in soybean roots (Li et al., 2010). [score:7]
In all of the previous studies, miR482 family members were downregulated following pathogen infection (Shivaprasad et al., 2012; Ouyang et al., 2014; Yang et al., 2015). [score:4]
Misexpression of miR482, miR1512, and miR1515 increases soybean nodulation. [score:3]
Several NBS-LRRs were predicted to be targeted by miR482, miR6024, and miR6027 family members (Datasets S6, S7). [score:3]
stu-miR167e—stu-miR167e-3p; stu-miR482miR482f-3p, miR482c-3p; stu-miR6022—miR6022-3p; StGA1—GA REQUIRING 1 (ent-copalyl diphosphate synthase); StGA20ox—GA20-oxidase; StGA3ox—GA3-oxidase; StGID1—GA receptor—GA INSENSITIVE DWARF1C hydrolase; StSN1—Snakin-1; StDELLA—DELLA protein; StLRR-RLK—leucine-rich repeat receptor-like protein kinase. [score:1]
Moreover, we also searched for miRNAs with the ability to trigger phasiRNA production and similarly to previous reports (Li et al., 2011; Shivaprasad et al., 2012), we observed that the vast majority of predicted miRNA triggers belong to miR482, miR6023, miR6024 and miR6027 families (Dataset S5). [score:1]
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[+] score: 16
Other miRNAs from this paper: osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR166a, osa-MIR166b, osa-MIR166c, osa-MIR166d, osa-MIR166e, osa-MIR166f, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR171a, osa-MIR393a, osa-MIR396a, osa-MIR396b, osa-MIR396c, osa-MIR397a, osa-MIR397b, osa-MIR398a, osa-MIR398b, osa-MIR399a, osa-MIR399b, osa-MIR399c, osa-MIR399d, osa-MIR399e, osa-MIR399f, osa-MIR399g, osa-MIR399h, osa-MIR399i, osa-MIR399j, osa-MIR399k, osa-MIR156k, osa-MIR156l, osa-MIR166k, osa-MIR166l, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR168a, osa-MIR168b, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR171b, osa-MIR171c, osa-MIR171d, osa-MIR171e, osa-MIR171f, osa-MIR171g, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR166g, osa-MIR166h, osa-MIR166i, osa-MIR171h, osa-MIR393b, osa-MIR408, osa-MIR172d, osa-MIR171i, osa-MIR167j, osa-MIR166m, osa-MIR166j, osa-MIR396e, mtr-MIR166a, mtr-MIR169a, mtr-MIR399b, mtr-MIR399d, mtr-MIR393a, mtr-MIR399c, mtr-MIR399a, mtr-MIR399e, mtr-MIR156a, mtr-MIR171a, mtr-MIR156b, mtr-MIR167a, mtr-MIR166b, mtr-MIR169c, mtr-MIR169d, mtr-MIR169e, mtr-MIR171b, mtr-MIR166c, mtr-MIR166d, mtr-MIR169f, mtr-MIR156c, mtr-MIR156d, mtr-MIR399f, mtr-MIR399g, mtr-MIR399h, mtr-MIR399i, mtr-MIR399j, mtr-MIR399k, mtr-MIR166e, mtr-MIR156e, mtr-MIR171c, mtr-MIR398a, mtr-MIR172a, mtr-MIR393b, mtr-MIR398b, mtr-MIR168a, mtr-MIR169g, mtr-MIR156f, mtr-MIR399l, mtr-MIR156g, mtr-MIR399m, mtr-MIR399n, mtr-MIR399o, mtr-MIR398c, mtr-MIR156h, mtr-MIR166f, mtr-MIR166g, mtr-MIR171d, mtr-MIR171e, mtr-MIR396a, mtr-MIR396b, mtr-MIR169h, mtr-MIR169b, mtr-MIR156i, mtr-MIR171f, mtr-MIR399p, osa-MIR169r, sly-MIR166a, sly-MIR166b, sly-MIR167a, sly-MIR169a, sly-MIR169b, sly-MIR169c, sly-MIR169d, sly-MIR171a, sly-MIR171b, sly-MIR171c, sly-MIR171d, sly-MIR397, sly-MIR156a, sly-MIR156b, sly-MIR156c, sly-MIR172a, sly-MIR172b, sly-MIR399, osa-MIR827, osa-MIR396f, mtr-MIR2118, osa-MIR2118a, osa-MIR2118b, osa-MIR2118c, osa-MIR2118d, osa-MIR2118e, osa-MIR2118f, osa-MIR2118g, osa-MIR2118h, osa-MIR2118i, osa-MIR2118j, osa-MIR2118k, osa-MIR2118l, osa-MIR2118m, osa-MIR2118n, osa-MIR2118o, osa-MIR2118p, osa-MIR2118q, osa-MIR2118r, mtr-MIR169k, mtr-MIR169j, mtr-MIR399q, osa-MIR396g, osa-MIR396h, osa-MIR396d, osa-MIR5072, mtr-MIR4414a, mtr-MIR4414b, mtr-MIR482, mtr-MIR172b, mtr-MIR172c, mtr-MIR171h, mtr-MIR168b, mtr-MIR399r, mtr-MIR156j, sly-MIR482e, sly-MIR482a, mtr-MIR167b, mtr-MIR168c, mtr-MIR408, mtr-MIR396c, mtr-MIR171g, stu-MIR6024, sly-MIR6024, stu-MIR482c, stu-MIR482a, stu-MIR482d, stu-MIR482e, sly-MIR482b, sly-MIR482c, stu-MIR6025, stu-MIR6026, sly-MIR6026, sly-MIR168a, sly-MIR168b, mtr-MIR169i, mtr-MIR172d, mtr-MIR397, mtr-MIR169l, mtr-MIR399s, mtr-MIR399t, stu-MIR7980a, stu-MIR7983, stu-MIR8007a, stu-MIR8007b, stu-MIR7980b, stu-MIR399a, stu-MIR399b, stu-MIR399c, stu-MIR399d, stu-MIR399e, stu-MIR399f, stu-MIR399g, stu-MIR399h, stu-MIR3627, stu-MIR171b, stu-MIR166a, stu-MIR166b, stu-MIR166c, stu-MIR166d, stu-MIR171a, stu-MIR171c, stu-MIR399i, stu-MIR827, stu-MIR172b, stu-MIR172c, stu-MIR172a, stu-MIR172d, stu-MIR172e, stu-MIR156a, stu-MIR156b, stu-MIR156c, stu-MIR156d, stu-MIR171d, stu-MIR167c, stu-MIR167b, stu-MIR167a, stu-MIR167d, stu-MIR399j, stu-MIR399k, stu-MIR399l, stu-MIR399m, stu-MIR399n, stu-MIR399o, stu-MIR393, stu-MIR398a, stu-MIR398b, stu-MIR396, stu-MIR408a, stu-MIR408b, stu-MIR397, stu-MIR171e, stu-MIR156e, stu-MIR156f, stu-MIR156g, stu-MIR156h, stu-MIR156i, stu-MIR156j, stu-MIR156k, stu-MIR169a, stu-MIR169b, stu-MIR169c, stu-MIR169d, stu-MIR169e, stu-MIR169f, stu-MIR169g, stu-MIR169h, sly-MIR403, sly-MIR166c, sly-MIR156d, sly-MIR156e, sly-MIR396a, sly-MIR167b, sly-MIR482d, sly-MIR169e, sly-MIR396b, sly-MIR171e, sly-MIR172c, sly-MIR408, sly-MIR172d, sly-MIR827, sly-MIR393, sly-MIR398a, sly-MIR399b, sly-MIR6025, sly-MIR169f, sly-MIR171f
Five of these NBS-LRR genes were targeted by miR482, while another NBS-LRR gene (Solyc10g008240.2.1) was targeted by miR6025. [score:5]
The miR482/2118 superfamily is a conserved phasiRNA trigger that regulates NBS-LRR gene expression across different plants (Zhai et al., 2011; Shivaprasad et al., 2012). [score:4]
Five miR482 triggering and one miR6025 triggering NBS-LRR loci were identified in our dataset, which further supports the phasiRNA based NBS-LRR gene expression in tomato (Shivaprasad et al., 2012). [score:3]
Interestingly, the expression of miR482 is not compromised upon the infection of R. irregularis. [score:3]
Six miR482-triggering NBS-LRR PHAS loci were identified in tomato (Shivaprasad et al., 2012). [score:1]
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5
[+] score: 10
Additionally, the NL25 protein disease resistance gene transcript (PGSC0003DMT400006234) is targeted by miR482b which is present in our prediction [28]. [score:5]
Table S4 Predicted targets of miR172, miR482 and validated potato specific miRNAs. [score:3]
Details of miR172, miR482 and the validated miRNAs are shown in the table. [score:1]
Some have known functions in flowering and tuberization (miR172) or guiding cleavage of transcripts of immune receptors (miR482) [27], [28], [48]. [score:1]
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[+] score: 9
In addition to transcription factors, other targets included mRNA coding for F-box family protein (miR394), disease resistance protein and fiber expressed protein (miR159), laccase (miR397), salt tolerance protein (miR157), UDP-glucoronate decarboxylase 2 (miR164), DNA binding protein (miR166 and miR396), NL25 disease resistance protein (miR482), protein phosphatase and kinase (miR390), AGO1-1 (miR168), galactose oxidase (miR6149) and proteins with unknown functions (Additional file 5). [score:9]
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[+] score: 2
Products of miR159, MYB33, and/or MYB101 genes that act downstream of CBP80 have been shown to be involved in the ABA- mediated regulation of potato responses to drought and similar studies have also identified and characterized microRNA families for drought stress response and their putative target genes including miR171 (stu-miRNA171a, b, and c), miR159, miR164, miR166, miR390, miR395, miR397, miR398, miR408, and miR482 (Hwang et al., 2011a, b; Pieczynski et al., 2013; Zhang et al., 2013). [score:2]
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[+] score: 1
The majority of miRNAs involved with lncRNAs were from miR156, miR171, miR172, miR1886, miR319, miR482, miR5303, miR7984, miR8007, and miR8011 (Supplementary Table S4). [score:1]
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