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score:
8
Other miRNAs from this paper: vvi-MIR156a, vvi-MIR156b, vvi-MIR156c, vvi-MIR156d, vvi-MIR156e, vvi-MIR156f, vvi-MIR156g, vvi-MIR156i, vvi-MIR164a, vvi-MIR164b, vvi-MIR164c, vvi-MIR164d, vvi-MIR166a, vvi-MIR166b, vvi-MIR166c, vvi-MIR166d, vvi-MIR166e, vvi-MIR166f, vvi-MIR166g, vvi-MIR166h, vvi-MIR167a, vvi-MIR167b, vvi-MIR167c, vvi-MIR167d, vvi-MIR167e, vvi-MIR168, vvi-MIR172a, vvi-MIR172b, vvi-MIR172c, vvi-MIR172d, vvi-MIR319b, vvi-MIR319c, vvi-MIR319f, vvi-MIR319g, vvi-MIR390, vvi-MIR394a, vvi-MIR394b, vvi-MIR396a, vvi-MIR396b, vvi-MIR396d, vvi-MIR535a, vvi-MIR535b, vvi-MIR535c, vvi-MIR156h, vvi-MIR319e, vvi-MIR394c, vvi-MIR396c, vvi-MIR397a, vvi-MIR482, vvi-MIR2111, vvi-MIR2950, vvi-MIR3624, vvi-MIR3629a, vvi-MIR3629b, vvi-MIR3629c, vvi-MIR3631a, vvi-MIR3631b, vvi-MIR3631c, vvi-MIR3633a, vvi-MIR3634, vvi-MIR3633b, vvi-MIR3637, vvi-MIR3639
In infected plants, miR166, miR319, miR396, miR3631, mi3633 and miR3639 were down-regulated in SWS, whereas miR168, miR482, miR535, miR2111, miR3624 and miR3634 were up-regulated (Fig. 2, Supplementary Fig. S4).
[score:7]
The qRT-PCR results generally confirmed the sequencing data; however, in a few cases (miR2950, miR3624, miR3631, miR3633, miR3634, miR3637), we observed some discrepancies (Table 1, Supplementary Fig. S4).
[score:1]
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score:
2
Other miRNAs from this paper: vvi-MIR156a, vvi-MIR156b, vvi-MIR156c, vvi-MIR156d, vvi-MIR156e, vvi-MIR156f, vvi-MIR156g, vvi-MIR156i, vvi-MIR159a, vvi-MIR159b, vvi-MIR159c, vvi-MIR164a, vvi-MIR164b, vvi-MIR164c, vvi-MIR164d, vvi-MIR166a, vvi-MIR166b, vvi-MIR166c, vvi-MIR166d, vvi-MIR166e, vvi-MIR166f, vvi-MIR166g, vvi-MIR166h, vvi-MIR169a, vvi-MIR169y, vvi-MIR169c, vvi-MIR169d, vvi-MIR169e, vvi-MIR169f, vvi-MIR169g, vvi-MIR169j, vvi-MIR169k, vvi-MIR169m, vvi-MIR169p, vvi-MIR169r, vvi-MIR169s, vvi-MIR169t, vvi-MIR169u, vvi-MIR171a, vvi-MIR171b, vvi-MIR171c, vvi-MIR171d, vvi-MIR171e, vvi-MIR171f, vvi-MIR171h, vvi-MIR171i, vvi-MIR172a, vvi-MIR172b, vvi-MIR172c, vvi-MIR172d, vvi-MIR319b, vvi-MIR319c, vvi-MIR319f, vvi-MIR319g, vvi-MIR390, vvi-MIR393b, vvi-MIR395a, vvi-MIR395b, vvi-MIR395c, vvi-MIR395d, vvi-MIR395e, vvi-MIR395f, vvi-MIR395g, vvi-MIR395h, vvi-MIR395i, vvi-MIR395j, vvi-MIR395k, vvi-MIR395l, vvi-MIR395m, vvi-MIR396a, vvi-MIR396b, vvi-MIR396d, vvi-MIR398a, vvi-MIR479, vvi-MIR156h, vvi-MIR169b, vvi-MIR169h, vvi-MIR169i, vvi-MIR169l, vvi-MIR169n, vvi-MIR169o, vvi-MIR169q, vvi-MIR169v, vvi-MIR169w, vvi-MIR169x, vvi-MIR171g, vvi-MIR319e, vvi-MIR393a, vvi-MIR395n, vvi-MIR396c, vvi-MIR482, vvi-MIR828a, vvi-MIR845a, vvi-MIR845b, vvi-MIR845c, vvi-MIR845d, vvi-MIR845e, vvi-MIR3626, vvi-MIR3630, vvi-MIR3631a, vvi-MIR3631b, vvi-MIR3631c, vvi-MIR3634, vvi-MIR3636, vvi-MIR3638, vvi-MIR3639, vvi-MIR171j
Seven grapevine miRNA known families (vvi-miR828, vvi-miR845, vvi-miR3626, vvi-miR3630, vvi-miR3631, vvi-miR3636 and vvi-miR3638), were not identified in our libraries.
[score:1]
The absence, in our data, of 7 annotated miRNA families is ascribed to their low abundance in the analyzed samples (i. e. for miR828; miR3626; miR3631; miR3636 and miR3638), or to their nature of siRNA-like miRNAs, since most of them are not annotated with high confidence in miRBase (as explained in Kozomara and Griffiths-Jones, [54]).
[score:1]
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