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5 publications mentioning ahy-MIR156b

Open access articles that are associated with the species Arachis hypogaea and mention the gene name MIR156b. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 45
In A. thaliana, miR156 was strongly expressed during seedling development and showed weak expression in mature tissues [40]. [score:6]
The expression analysis of ahy-miR156 revealed a tissue-specific expression pattern similar to that found in A. thaliana. [score:5]
The expressions of miR156 and miR3508 had no obvious pattern during seed development with a peak of RNA accumulation at 50 and 40 DAP, respectively. [score:4]
As expected, many conserved miRNAs targeted transcription factors similar to those predicted in A. thaliana or soybean (G. max) [35], [36], such as those encoding the squamosa promoter -binding protein (SBP, ahy-miR156), the NAC domain protein (ahy-miR164), the auxin response factor (ARF, ahy-miR167), nuclear transcription factor Y (ahy-miR169), APETALA2 (AP2, ahy-miR172) and growth regulating factor (GRF, ahy-miR396), reinforcing the idea that conserved plant miRNAs are involved in essential biological processes. [score:4]
ahy-miR156 showed higher expression levels in leaf, root and stem, and lower levels in seed and flower. [score:3]
Solexa sequencing produced a large number of miRNA sequences, allowing us to determine the relative abundance of miRNAs in peanut; the frequencies of miRNA families varied from 1 (miR2914) to 1,330,176 (miR156), indicating that expression varies significantly among different miRNA families. [score:3]
We analyzed changes in the expression levels of seven identified peanut miRNAs, which included 4 known miRNAs (miR156, miR166, miR396 and miR3508) and 3 peanut-specific miRNAs (miR3, miR7, miR16 and miR16*). [score:3]
The expression levels of 3 novel miRNAs (miR3, miR7, miR16 and miR16*) and 4 conserved miRNAs (miR156, miR166, miR396 and miR3508) were examined by stem-loop RT-PCR (Figure 2; Table 3). [score:3]
Our results demonstrated that 4 miRNA families (miR156, miR159, miR171 and miR14) had a total of 4 targets, which were involved in amino acid metabolism, fatty acid metabolism and lipid metabolism. [score:3]
O. sativa miR156 showed an expression profile similar to those found in A. thaliana and peanut [41]. [score:3]
Expression of miR156 was higher in leaf, root and stem, and lower in flower and seed. [score:3]
miR156 promoted juvenile development by repressing members of the SBP family of transcription factors. [score:2]
By deep sequencing of peanut small RNAs (6,009,541 reads), Zhao et al. (2010) identified 22 conserved miRNA families (miR156–miR894) and 14 novel miRNAs (miRn1–miRn14) [25]. [score:1]
For example, abundance of the miR156 family varied from 1 read (miR156f) to 474,415 reads (miR157) in the deep sequencing, similar to the case for some other miRNA families, such as miR166 (1–120,435 reads) and miR167 (2–57,060 reads). [score:1]
The miR156 (1,330,176 reads), miR166 (215,652 reads) and miR167 (62,193 reads) families were the most frequent in the library. [score:1]
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2
[+] score: 29
As shown in Fig.   3c, miR164, miR167, miR172, miR390, miR7502 and miR9666 were up-regulated significantly, while miR156, miR396, miR894, miR1088, miR4414 and miRn8 were significantly down-regulated during early pod development (Fig.   3d). [score:8]
Our results showed that miR156-directed cleavage of SPL declined whereas miR164-directed cleavage of NAC transcripts increased during early pod development (Fig.   6), which consists with the earlier observed expression profiles of miR156 and miR164 determined by qRT-PCR (Fig.   3). [score:6]
Furthermore, we performed profiling analysis of intact and total transcripts of several target genes, demonstrating that SPL (miR156/157), NAC (miR164), PPRP (miR167 and miR1088), AP2 (miR172) and GRF (miR396) are actively modulated during early pod development, respectively. [score:4]
Indeed, miR156 -mediated regulation of SPL transcripts has been proved to play critical roles in regulating zygotic embryo development in Arabidopsis [39]. [score:4]
MiR156 and miR172 coordinately regulate the timing of juvenile-to-adult transition during shoot development [18]. [score:3]
Both miR156 and miR397 are involved in the regulation of seed development by controlling grain size and shape in rice [20, 21]. [score:3]
Based on the normalized abundance of degradome sequencing data, miR156 -mediated cleavage of SPL (Araip. [score:1]
[1 to 20 of 7 sentences]
3
[+] score: 22
Other miRNAs from this paper: osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR162a, osa-MIR164a, osa-MIR164b, osa-MIR166a, osa-MIR166b, osa-MIR166c, osa-MIR166d, osa-MIR166e, osa-MIR166f, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR393a, osa-MIR394, osa-MIR396a, osa-MIR396b, osa-MIR396c, osa-MIR156k, osa-MIR156l, osa-MIR159a, osa-MIR159b, osa-MIR159c, osa-MIR159d, osa-MIR159e, osa-MIR159f, osa-MIR162b, osa-MIR164c, osa-MIR164d, osa-MIR164e, osa-MIR166k, osa-MIR166l, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR168a, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR166g, osa-MIR166h, osa-MIR166i, osa-MIR393b, osa-MIR172d, osa-MIR167j, osa-MIR166m, osa-MIR166j, osa-MIR164f, osa-MIR396e, gma-MIR156d, gma-MIR156e, gma-MIR156c, gma-MIR159a, gma-MIR166a, gma-MIR166b, gma-MIR167a, gma-MIR167b, gma-MIR168a, gma-MIR172a, gma-MIR172b, gma-MIR156a, gma-MIR396a, gma-MIR396b, gma-MIR156b, gma-MIR169a, osa-MIR169r, gma-MIR159b, gma-MIR159c, gma-MIR162a, gma-MIR164a, gma-MIR167c, gma-MIR169b, gma-MIR169c, gma-MIR393a, gma-MIR482a, osa-MIR396f, gma-MIR167d, gma-MIR396c, gma-MIR167e, gma-MIR167f, gma-MIR172c, gma-MIR172d, gma-MIR172e, osa-MIR2118a, osa-MIR2118b, osa-MIR2118c, osa-MIR2118d, osa-MIR2118e, osa-MIR2118f, osa-MIR2118g, osa-MIR2118h, osa-MIR2118i, osa-MIR2118j, osa-MIR2118k, osa-MIR2118l, osa-MIR2118m, osa-MIR2118n, osa-MIR2118o, osa-MIR2118p, osa-MIR2118q, osa-MIR2118r, osa-MIR396g, osa-MIR396h, osa-MIR396d, ahy-MIR156a, ahy-MIR156c, ahy-MIR159, ahy-MIR167, ahy-MIR394, gma-MIR396d, gma-MIR482b, gma-MIR167g, gma-MIR156f, gma-MIR169d, gma-MIR172f, gma-MIR169e, gma-MIR394b, gma-MIR156g, gma-MIR159d, gma-MIR394a, gma-MIR396e, gma-MIR156h, gma-MIR156i, gma-MIR162b, gma-MIR164b, gma-MIR164c, gma-MIR164d, gma-MIR166c, gma-MIR166d, gma-MIR166e, gma-MIR166f, gma-MIR166g, gma-MIR166h, gma-MIR169f, gma-MIR169g, gma-MIR394c, gma-MIR2118a, gma-MIR2118b, gma-MIR482c, gma-MIR169h, gma-MIR167h, gma-MIR169i, gma-MIR396f, gma-MIR396g, gma-MIR167i, gma-MIR156j, gma-MIR156k, gma-MIR156l, gma-MIR156m, gma-MIR156n, gma-MIR156o, gma-MIR159e, gma-MIR159f, gma-MIR162c, gma-MIR166i, gma-MIR166j, gma-MIR169j, gma-MIR169k, gma-MIR169l, gma-MIR169m, gma-MIR169n, gma-MIR172g, gma-MIR172h, gma-MIR172i, gma-MIR172j, gma-MIR396h, gma-MIR396i, gma-MIR482d, gma-MIR167j, gma-MIR393b, gma-MIR156p, gma-MIR172k, gma-MIR156q, gma-MIR172l, gma-MIR169o, gma-MIR394d, gma-MIR169p, gma-MIR156r, gma-MIR396j, gma-MIR156s, gma-MIR169r, gma-MIR169s, gma-MIR396k, gma-MIR166k, gma-MIR156t, gma-MIR482e, gma-MIR394e, gma-MIR169t, gma-MIR166l, gma-MIR394f, gma-MIR166m, gma-MIR169u, gma-MIR156u, gma-MIR156v, gma-MIR156w, gma-MIR156x, gma-MIR156y, gma-MIR156z, gma-MIR156aa, gma-MIR156ab, gma-MIR164e, gma-MIR164f, gma-MIR164g, gma-MIR164h, gma-MIR164i, gma-MIR164j, gma-MIR164k, gma-MIR166n, gma-MIR166o, gma-MIR166p, gma-MIR166q, gma-MIR166r, gma-MIR166s, gma-MIR166t, gma-MIR166u, gma-MIR169v, gma-MIR393c, gma-MIR393d, gma-MIR393e, gma-MIR393f, gma-MIR393g, gma-MIR393h, gma-MIR393i, gma-MIR393j, gma-MIR393k, gma-MIR394g, gma-MIR167k, gma-MIR167l, gma-MIR169w
Aberrant expression of miR156 and miR172 in plants disrupts normal leaf and flower development. [score:4]
Compared with miR156 and miR172, the expression levels of miR157 and miR162 are moderate while the expression of miR396 is low. [score:4]
Based on the threshold cycle (C [T]), miR172 and miR156 were highly expressed with C [T ]values of 19.6 ± 3.5 and 20.5 ± 5.3, respectively. [score:3]
miR156 is involved in Arabidopsis leaf development by negatively regulating the Squamosa-promoter binding protein (SBP) [38, 42]. [score:3]
Other studies have shown that conserved miR172 and miR156 play very important roles in plant growth and development [41]. [score:2]
For example, miR156/157, miR159/319, miR166, miR169, and miR394 have been found in 51, 45, 41, 40, and 40 plant species, respectively [34, 38, 41]. [score:1]
In comparison to other plant species, tae-miR169b in wheat and osa-miR169 in rice were the most frequently sequenced miRNAs while miR156 in rice and wheat exhibited low abundance [46]. [score:1]
In this study, we adopted this technique to validate and measure the expression of 4 novel miRNAs (miRn1, miRn2 and miRn2*, miRn3, and miRn4) as well as 5 conserved miRNAs (miR156, miR157, miR162, miR172, and miR396). [score:1]
Of the 22 miRNA families, three miRNA families (miR156/157, miR166, and miR167) were predicted [34, 38, 41] using a comparative genomics -based strategy [38]. [score:1]
In this study, 5 conserved miRNAs (miR156, miR157, miR162, miR172, and miR396) and 4 peanut-specific miRNAs (miRn1, miRn2 and miRn2*, miRn3, and miRn4) were validated using qRT-PCR (Table 3). [score:1]
For example, the abundance of miR156 family varied from 4 read (ahy-miR156f) to 17,058 reads (ahy-miR156a) in the deep sequencing. [score:1]
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4
[+] score: 10
Temporal regulation of shoot development in Arabidopsis thaliana by miR156 and its target SPL3. [score:5]
miR156-regulated SPL transcription factors define an endogenous flowering pathway in Arabidopsis thaliana. [score:2]
For example, in Arabidopsis, 33 different miRNA families have been detected in mature pollen, and several (miR156, miR2939, miR158, and miR845) showed elevated expression levels in pollen compared with leaves (Grant-Downton et al., 2009). [score:2]
In addition, 337 miRNAs were also confirmed, but their sequences were different from those reported in miRbase, including miR156b-5p_R+1, miR167-3p_L-1, miR394_L+1_2, miR408-5p_L+1R-1, and miR3508_2ss20CT21AT, among others. [score:1]
[1 to 20 of 4 sentences]
5
[+] score: 6
Other miRNAs from this paper: ahy-MIR156a, ahy-MIR156c
miR156, one of the stress responsive miRNAs (Stief et al., 2014), was seen to target a wide range of genes which include AGO genes in groundnut, and RDR genes in chickpea and pigeonpea suggesting the involvement of various mechanisms in sRNA regulation (Supplementary Table 9). [score:4]
Arabidopsis miR156 regulates tolerance to recurring environmental stress through SPL transcription factors. [score:2]
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