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26 publications mentioning sly-MIR160a

Open access articles that are associated with the species Solanum lycopersicum and mention the gene name MIR160a. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 51
For instance, five (miR156e-3p, miR160a-3p, miR162a-5p, miR395a and miR398a-5p) and 19 (e. g., miR156b, miR156c, miR156e-3p, miR156e-5p, miR156d-5p, miR160a-3p, miR162a-5p) significantly expressed known miRNAs were specific to stamens in 2 d and 12 d libraries, respectively (Fig.   5a, Additional file 1: Table S6), whereas six significantly differentially expressed known miRNAs including miR172b, miR167a, miR319b, and miR482a were unique to pistils under heat-stress treatment for 12 d (Fig.   5a, Additional file 1: Table S7). [score:5]
The expression levels of miR156e-5p, miR160a, miR393-5p, miR397–5p, miR398b-3p, and pc-7b (pc: predicted candidates of novel miRNA) showed significant reduction at 2 d after high-temperature treatment, although these miRNAs exhibited no differential expression at the later stages. [score:5]
Thus, the expression profiles of five target genes, SlSPL15 for miR156, SlARF10 and SlARF16 for miR160, SlTIR1 for miR393, and SlCSD1 for miR398, were analyzed in stamens and pistils. [score:5]
Previous studies have demonstrated that miR160 targets ARF10, ARF16, and ARF17 to modulate the expression of early auxin response genes [67, 68]. [score:5]
RLM-5′ RACE validated that miR398b-3p, miR393-5p, miR160a, and miR156e-5p were active and directed the cleavage of their targets, except for miR397–5p (data not shown). [score:4]
Among these miRNAs, miR398b-3p, miR393-5p, miR160a, miR156e-5p, and miR397–5p were of particular interest as their predicted targets play crucial roles in plant signal transduction, flower development, and cell wall architecture [21, 41, 60, 61]. [score:4]
Meanwhile, miR393-5p and miR160a were found to target auxin receptor F-box protein SlTIR1 and ARFs, respectively, which play critical roles in auxin -mediated signaling and plant development [60, 64]. [score:4]
The cleavage products of SlARF10/16 and SlTIR1, predicted targets of miR160a and miR393-5p, respectively, were identified in both stamen and pistil libraries with the same cleavage sites (Fig.   7). [score:3]
Four differentially expressed miRNAs, namely, miR398b-3, miR393-5p, miR160a, and miR156e-5p, were examined in stamens, and miR393-5p and miR160a were examined in pistils. [score:3]
qRT-PCR and sequencing data showed that the levels of miR393-5p and miR160a in stamens and pistils were negatively correlated with the expression of SlTIR1 and SlARF10/16, respectively (Figs.   8 and 9, Additional file 1: Table S2). [score:3]
Among these differentially expressed miRNAs, four known (miR395a, miR160a-3p, miR162a-5p, and miR156e-3p) and six novel miRNAs were common in the HS-2d and HS-12d libraries (Fig.   5, Additional file 1: Table S2 and Table S4). [score:3]
RLM-5′-RACE analysis in our study showed that miR393-5p directed the cleavage of SlTIR1 transcripts, whereas miR160a guided the cleavage of SlARF10 and SlARF16 transcripts (Fig.   7). [score:2]
Computational analyses combined with experimental approaches provided evidence that the miR398b-3p/ SlCSD1, miR393-5p/ SlTIR1, miR160a/ SlARF10/16, miR156e-5p/ SlSPL15, and miR397–5p/ LACs cleavage cascades were tightly correlated with the regulation of the response to heat stress and metabolic pathways in stamens and pistils (Fig.   10). [score:2]
Whereas two miRNAs, miR397–5p and miR398b-3p, were common in the stamen and pistil libraries at 2 d after heat-stress treatment, 12 known miRNAs belonging to the miR159, miR160, miR319, miR393, miR482, miR1918, miR6026, and miR6027 families (Fig.   5a, Additional file 1: Table S5) were common at 12 d after heat-stress treatment. [score:1]
For example, miR160, miR168, and miR169 increased under 40 °C for 1 h in leaves of wheat seedlings, whereas pto-miR160, pto-miR168, pto-miR169a-b, and pto-miR169n-t showed a significant reduction in P. tomentosa subjected to 37 °C for 8 h [25, 27]. [score:1]
These observations suggest that miR393-5p/ SlTIR1 and miR160a/ SlARF10/16 cleavage cascades mediated by auxin signaling were activated by heat-stress treatment. [score:1]
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2
[+] score: 45
Other miRNAs from this paper: sly-MIR167a, sly-MIR167b
The expression of miR160 was also negatively correlated with the expression of its target gene SlARF10A in roots exposed to drought stress. [score:7]
In roots, SlARF10A was up-regulated during the first two hours of salt treatment while the expression of miR160 remained unchanged. [score:6]
Tomato miR160 was significantly repressed in leaves after 48 hours of drought stress whereas the expression of ARF10A showed a high induction in 5 days drought stressed roots while the expression of miR160 remained similar to the control. [score:5]
qPCR analysis showed that the expression pattern of miR160 and its target gene SlARF10A changed significantly in response to salt stress (Fig 6). [score:5]
This finding suggests that miR160 might be implicated in the post-transcriptional regulation of the expression of ARF10A gene under stress conditions. [score:4]
SlARF8 and SlARF6 are known to be targeted by miR167 and SlARF10 is specifically regulated by miR160 [41, 63]. [score:4]
Some miRNAs, including miR160 and miR167, known to regulate the levels of transcription factor transcripts and protein abundance showed altered expression profiles in salt and drought conditions. [score:4]
In leaves, miR160 was two times induced after 24 hours of salt treatment while ARF10A gene was concomitantly downregulated. [score:4]
0193517.g006 Fig 6 SlARF10A and miR160 expression under salt and drought stress conditions. [score:3]
SlARF10A and miR160 expression under salt and drought stress conditions. [score:3]
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3
[+] score: 41
The expression amounts of sha-miR6023-p5 and sha-miR6027 were also significantly higher in both CT libraries at 1 h and then obviously decreased at 12 h. At 4 h, the expression amounts of sha-miR160a, sha-miR398_nta and PC-46-5p were significantly higher in both CT libraries than that in the NT libraries and then decreased, while the expression amounts of PC-170-5p were significantly higher in the CT libraries at 8 h. Meanwhile, the expression amounts of six target genes cleaved by sha-miR160a, sha-miR398_nta, sha-miR482b, sha-miR6027 and PC-46-5p were also verified by qRT-PCR. [score:11]
As shown in Figure  5, the expression amounts of target genes cleaved by sha-miR160a and PC-46-5p were both significantly lower in the CT libraries, followed by an increase, and they were significantly higher in the CT libraries at 48 h. The expression amounts of the target genes cleaved by sha-miR398_nta and sha-miR6027 exhibited the same trend, while they were significantly higher in the CT libraries and peaked at 24 h and 12 h, respectively. [score:9]
On the other hand, sha-miR396 (sha-miR396a_nta and sha-miR396b_nta) directly targeted low-temperature -induced proteins that might play positive roles in the chilling response, and sha-miR160a and sha-miR167b_nta might participate in the stress response by targeting an auxin response factor gene. [score:6]
The decreased sha-miR160a, sha-miR167b_nta, sha-miR168 (sha-miR168a-5p and sha-miR168b-5p), sha-miR171a, sha-miR171a_nta, sha-miR171c_mtr and sha-miR171d targeted genes that function in signal transduction, regulation of the expression of miRNAs and genes encoding anti-stress proteins. [score:6]
On the other hand, the expression amounts of six target genes cleaved by sha-miR160a, sha-miR398_nta, sha-miR482b, sha-miR6027 and PC-46-5p were also verified by qRT-PCR. [score:5]
In the current study, auxin response factors genes were cleaved by decreased sha-miR160a and sha-miR167b_nta and more tag sequences were mainly detected in the NT library, while only miR167 -targeted auxin response factors genes were identified in the chilling response in rice [27]. [score:3]
To confirm and verify the sequencing result, nine miRNAs, including conserved sha-miR156a, sha-miR160a, sha-miR398_nta, sha-miR482b, sha-miR6023-p5 and sha-miR6027 and the novel PC-46-5p, PC-69-5p and PC-170-5p, were chosen for in the sequenced tomato cultivar ‘LA1777’. [score:1]
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4
[+] score: 34
The expression profiles of the B. cinerea-responsive miRNA targetsCleaveLand pipeline was performed to predict the targets of the seven known B. cinerea-responsive miRNAs (miR159, miR160, miR169, miR319, miR394, miR1919, and miR5300), thereby detecting the expression profiles of their target genes. [score:11]
CleaveLand pipeline was performed to predict the targets of the seven known B. cinerea-responsive miRNAs (miR159, miR160, miR169, miR319, miR394, miR1919, and miR5300), thereby detecting the expression profiles of their target genes. [score:7]
The psRNAtarget program was used for the second screening of the targets, only 9 CDSs were targeted by 4 known miRNAs, namely miR159, miR160, miR319, and miR394 (Additional file 6: Table S4). [score:7]
miR160 and miR5300, were downregulated; however, no significant differential expression in B. cinerea-inoculated leaves was observed for miR156 (Figure  5). [score:6]
We examined the expression patterns by subjecting 9 B. cinerea-responsive miRNAs, including 8 known miRNAs (miR156, miR159, miR160, miR169, miR319, miR394, miR1919, and miR5300) and 1 novel miRNA (miRn1), to quantitative reverse-transcription PCR (qRT-PCR) (Figure  5). [score:3]
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5
[+] score: 28
miRNA Fold (↑ or ↓) Target protein class Function References miR160 ↓, 2X Auxin response factors Hormone signaling and plant development[50] miR162 ↑, 2X Dicer-like (DCL) protein Plant development[39] miR168 ↑, 2X ARGONAUTE (AGO) protein Plant development[40, 51] miR169 ↓, 2X CBF HAP2-like factors Abiotic stress responses[52] miR171 ↓, 2X Scarecrow- like (GRAS domain) TFs Flowering time[11] miR172 ↑, ~4X APETALA-2 (AP2) like TFs Floral identity and phase transition[13, 17] miR319 ↑, ~4X TCP, bHLH TF Leaf patterning[19] miR391 ↓, 3X Not known Not known miR396 ↑, 2X GRL TFs, Rhodanase like proteins Defense responses[23] miR397 ↑, 1.5X Laccases, b -6 tubulin Fungal infection[7, 23] miR398 ↑, 3X Copper superoxide dismutases (CSD1/2) Abiotic stress[43] miR408 ↑, 1.5X Plantacyanin Stress responses[23] miR447 ↑, 2.5X 2-Phosphoglycerate kinase Metabolic pathway[7]The relative expression values of the individual miRNAs as revealed from the array analysis have been plotted as a histogram (see Additional file 1; Fig. S 2 a, b). [score:8]
miRNA Fold (↑ or ↓) Target protein class Function References miR160 ↓, 2X Auxin response factors Hormone signaling and plant development[50] miR162 ↑, 2X Dicer-like (DCL) protein Plant development[39] miR168 ↑, 2X ARGONAUTE (AGO) protein Plant development[40, 51] miR169 ↓, 2X CBF HAP2-like factors Abiotic stress responses[52] miR171 ↓, 2X Scarecrow- like (GRAS domain) TFs Flowering time[11] miR172 ↑, ~4X APETALA-2 (AP2) like TFs Floral identity and phase transition[13, 17] miR319 ↑, ~4X TCP, bHLH TF Leaf patterning[19] miR391 ↓, 3X Not known Not known miR396 ↑, 2X GRL TFs, Rhodanase like proteins Defense responses[23] miR397 ↑, 1.5X Laccases, b -6 tubulin Fungal infection[7, 23] miR398 ↑, 3X Copper superoxide dismutases (CSD1/2) Abiotic stress[43] miR408 ↑, 1.5X Plantacyanin Stress responses[23] miR447 ↑, 2.5X 2-Phosphoglycerate kinase Metabolic pathway[7] The relative expression values of the individual miRNAs as revealed from the array analysis have been plotted as a histogram (see Additional file 1; Fig. S 2 a, b). [score:8]
Microarray and northern hybridization results show that most of the deregulated miRNAs were induced and only few (miR160, miR164, miR169, miR171 and miR391) were down-regulated following ToLCNDV infection. [score:5]
For instance, the microarray data revealed that miR160 expression level in leaves appeared to be reduced by ~1.5 folds following ToLCNDV agroinfection, but the corresponding pre-miRNA levels increased by two folds (Figure 5a). [score:3]
The precursors of miR162, miR172, miR395, miR397 and miR399 were induced to more than five folds in ToLCNDV infected leaves, while those of miR159, miR160, miR167 and miR319 showed almost 2-3 times increase in ToLCNDV infected leaves (Table 3). [score:1]
Interestingly, with flower tissues, no significant changes were observed for miR160 and miR172 precursor levels (Figure 5b) during ToLCNDV infection. [score:1]
, miR160, miR169, miR170 and miR391 following ToLCNDV infection (Figure 2). [score:1]
, miR165/166, miR159/319, miR164 and miR160. [score:1]
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6
[+] score: 26
Except the previous report that miR160 was found to target ARF10, ARF16 and ARF17 (Karlova et al., 2013), we also found that miR160 targeted ARF18‐like and PSII protein (Table S4). [score:5]
In our study, we found 44 target genes, but only the targets of 4 miRNAs (sly‐miR156, sly‐miR160, sly‐miR166 and sly‐miR482) were matched with their results (Table S4). [score:5]
In tomato degradome results, 15 target genes were related to stimulus response such as ARF and disease resistance proteins were identified in category 0 cleaved by sly‐miR160, sly‐miR168, sly‐miR172, sly‐miR396, sly‐miR482, sly‐miR6023 and sly‐miR6024 families (Figure  6, Table S4). [score:5]
Drought‐responsive miRNAs (such as sly‐miR160, sly‐miR165, sly‐miR166, sly‐miR171, sly‐miR398, sly‐miR408, sly‐miR827, sly‐miR9472, sly‐miR9476 and sly‐miR9552) regulated drought and development‐associated genes like DRP, HD‐ZIP, MYB, NAC and PSII in root and upground tissues (Figure  11a). [score:3]
For example, a stress‐responsive gene ARF which is related with auxin signalling was targeted by sly‐miR160, sly‐miR2199 and sly‐miR6426 in response to drought stress in our study. [score:3]
miR160, miR165, miR166, miR171, miR398, miR408, miR827, miR9472, miR9476 and miR9552 were the key mi RNAs functioning in regulation of these genes and involving in tomato response to drought stress. [score:2]
These transcripts included dehydration‐responsive family protein, DRP (dehydration‐responsive protein), ERD (early responsive to dehydration‐like) protein, DREB (dehydration‐responsive element binding) and Di19 protein (dehydration‐/drought‐induced 19 protein) and potentially regulated by 38 tomato miRNAs; these miRNAs included sly‐miR160a‐3p, sly‐miR170‐3p, sly‐miR1074, sly‐miR3948, sly‐miR5081, sly‐miR5758, sly‐miR8001b‐5p and sly‐miR9748. [score:2]
Other two stress‐related genes, SBP and ARF, were cleaved by sly‐miR156 and sly‐miR160 families, respectively. [score:1]
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7
[+] score: 25
Other miRNAs from this paper: sly-MIR390a, sly-MIR390b
Above mentioned inducing phenotypes were consistent with the changes of lateral root formation-related microRNA transcripts: up-regulation of miR390a and miR160, and with the opposite tendencies of their target genes (encoding auxin response factors). [score:6]
shown in Fig.   7 revealed that both NaHS and H [2]O [2] up-regulated miR390a and miR160 transcripts; while, their corresponding target genes, including SlARF4 and SlARF16, were significantly reduced. [score:6]
Several miRNAs related to ARFs have been detected via computational approaches [12], such as miR390 targeting ARF2, ARF3 and ARF4 [13], while miR160 targeting ARF10, ARF16 and ARF17 [14]. [score:5]
In this study, the results of qPCR revealed that miR390a and miR160 transcripts were increased by both H [2]S and H [2]O [2], and contrasting changes were observed in their target genes, including SlARF4 and SlARF16 (Fig. 7). [score:3]
Another miRNA, miR160, was confirmed to have a positive role in the induction of LR formation via targeting ARF16 in Arabidopsis [54]. [score:3]
Thus, several representative miRNAs correlated with ARFs and LR formation [52], including miR390a for SlARF4 [55], and miR160 for SlARF16 [54], were chosen. [score:1]
Three-day-old tomato seedlings were treated with H [2]O (Con), 1 mM NaHS, 100 μΜ H [2]O [2], 500 μΜ N,N′-dimethylthiourea (DMTU), and 0.1 μΜ diphenylene idonium (DPI), alone or their combinations for 12 h. Meanwhile, miR390a (a; black), SlARF4 (a; white), miR160 (b; black), and SlARF16 (b; white) transcript levels were analyzed by qPCR, and presented relative to the Con. [score:1]
[1 to 20 of 7 sentences]
8
[+] score: 25
For example, miR160 and miR168 were up-regulated in Triticum aestivum but down-regulated in Populus tomentosa by exposure to high temperatures 26 38. [score:7]
By comparison, spi-miR160a-3p_stu was detected only at the acutely elevated temperature, while spi-miR168a-3p was significantly down-regulated (1.07-fold) and spi-miR168a-3p_ath was significantly up-regulated (2.89-fold) under this condition (Supplementary Table S3). [score:7]
Compared to the control, the expression level of Solyc12g014120.1.1 cleaved by spi-miR159 significantly increased at 1 h and decreased at 4 h, with a significant increase at 12 h at the moderately elevated temperature; the expression level of Solyc11g013470.1.1 targeted by spi-miR160a significantly decreased at the moderately elevated temperature except at 48 h (Fig. 5A). [score:6]
In this study, miR160 showed no significant changes at the moderately elevated temperature, while spi-miR168a-5p_ath was significantly down-regulated (1.47-fold) (Supplementary Table S3). [score:4]
We found that some miRNAs (including miR156, miR167 and miR168) in tomato plants might respond when the plants are exposed to temperatures only slightly higher than the normal growing temperature, while others (miR160, miR398 and miR399) might only respond to acutely elevated temperatures. [score:1]
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9
[+] score: 17
To interpret the possible specific relationships of the targets and different phenotypes between the reciprocal hybrids, the quantitative RT-PCR analysis was used to measure the expression levels of six predicted target genes that are involved in the development of leaves, including ARF16 (miR160a), HD-ZIP (miR165a), Auxin F-box protein (miR393a), and F-box protein (miR394a) [33- 36], the development of fruits, including SBP (miR156f-3p) [37], and plant height, including SCL (miR171a-3p) [38] (Figure  5). [score:7]
In a previous study, the loss-of-function mutant of ARF16 (MIR160a gene) was used to find intriguing phenotypes in the leaf [33], suggesting that different expression levels may influence the development of the leaf. [score:4]
Meanwhile, the expressions of miR160a, miR165a, miR393a and miR394a showed dramatically different profile between the reciprocal hybrids. [score:3]
The expression levels of the other 36 miRNAs, including miR482c, miR394a, miR535b, miR169b, miR170, miR393a, miR160a and miR165a, were obviously lower in Micro-Tom × WVa700. [score:3]
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10
[+] score: 14
Moreover, the auxin response factors that indirectly control ethylene signaling were the targets of miR160a and the nat-siRNA-G2006 and nat-siRNA-G2007. [score:4]
In Arabidopsis, ARF6 and ARF8, ARF16, and ARF17 were reported to be the targets of miR167 and miR160, respectively. [score:3]
From the network mo del, it could clearly been seen that miR394, miRZ131, miR172, miR8737, miR319, miR159, miR160, and nat-siRNA-G2001 to nat-siRNA-G2017 as well as their target genes such as auxin response factors, ethylene-responsive transcription factors and GAMYB were involved in ethylene signal pathway. [score:3]
Unexpectedly, ARF10 and ARF18 were identified to be the targets of miR160. [score:3]
In addition, auxin response factors genes cleaved by miR160 were also found in our results. [score:1]
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11
[+] score: 14
The results of miRNA targets analysis suggested that miRNA160-/167 -mediated post-transcriptional regulation of ARFs was conserved between pepper and Arabidopsis. [score:4]
In soybean, miRNA160 promotes auxin activity by suppressing the levels of the ARF10/16/17 family of repressor ARF transcription factors during nodule development. [score:4]
High miR160 levels promote auxin activity and suppress cytokinin activity, but low miR160 levels did the opposite [63]. [score:3]
The phylogenetic tree showed that CaARF5, 8, 15 and 17, AtARF10, 16, and 17 were in class II; and these four CaARF genes contained a target site for miRNA160. [score:3]
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12
[+] score: 12
Other miRNAs from this paper: sly-MIR167a
Suppression of SlARF5 induces parthenocarpyTo explore the function of SlARF5 during fruit set and development, amiSlARF5 transgenic plants were generated using A. thaliana miRNA160a as a backbone to express an artificial miRNA (amiRNA) using a 125 bp SlARF5-specific fragment, which was cloned into the pCAMBIA1301-35S vector. [score:6]
To explore the function of SlARF5 during fruit set and development, amiSlARF5 transgenic plants were generated using A. thaliana miRNA160a as a backbone to express an artificial miRNA (amiRNA) using a 125 bp SlARF5-specific fragment, which was cloned into the pCAMBIA1301-35S vector. [score:4]
amiRNAs were engineered into a 128 bp fragment containing the miRNA160a stem-loop, synthesized by Invitrogen, and then cloned into the BamH I and Hind III sites of a modified pCAMBIA1301 vector with a 35 S promoter inserted using Kpn I and Sma I, which was used for plant transformation. [score:1]
Construction of amiSlARF5 vectorsamiRNAs were engineered into a 128 bp fragment containing the miRNA160a stem-loop, synthesized by Invitrogen, and then cloned into the BamH I and Hind III sites of a modified pCAMBIA1301 vector with a 35 S promoter inserted using Kpn I and Sma I, which was used for plant transformation. [score:1]
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13
[+] score: 11
Nevertheless, significant up-regulation of SlARF3, SlARF4, and SlARF10 was not detected in these primordia, most probably due to insufficient down-regulation of sly-miR390 and sly-miR160a, respectively (Fig. 6D). [score:7]
Indeed, perturbation of the post-transcriptional regulation of SlARF10, and SlARF3 and SlARF4, which are normally cleaved by sly-miR160a and tasiARF, respectively, has been shown to reduce blade outgrowth dramatically in tomato leaves (Hen delman et al., 2012; Yifhar et al., 2012). [score:2]
Molecular analysis of young leaf primordia confirmed the silencing of SlDCL1 (Fig. 6B) and, accordingly, revealed reduced accumulation of sly-miR160a and sly-miR390, which is required for ta-siARF biogenesis (Fig. 6C) (Yifhar et al., 2012). [score:1]
Reduced tomato leaf lamina outgrowth has also been associated with ectopic accumulation of miR160-resistant SlARF10 (Hen delman et al., 2012). [score:1]
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14
[+] score: 8
In Arabidopsis, 36 lncRNAs were identified as endogenous target mimic for 11 conserved miRNAs, and eTMs of miR160 and miR166 are functional in the regulation of plant development [50]. [score:5]
In rice, several lncRNAs were also identified as competing endogenous RNAs, which bound miR160 and miR164 in a type of target mimicry [11]. [score:3]
[1 to 20 of 2 sentences]
15
[+] score: 7
Other miRNAs from this paper: osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR162a, osa-MIR164a, osa-MIR164b, osa-MIR166a, osa-MIR166b, osa-MIR166c, osa-MIR166d, osa-MIR166e, osa-MIR166f, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR171a, osa-MIR394, osa-MIR395b, osa-MIR395d, osa-MIR395e, osa-MIR395g, osa-MIR395h, osa-MIR395i, osa-MIR395j, osa-MIR395k, osa-MIR395l, osa-MIR395s, osa-MIR395t, osa-MIR395c, osa-MIR395a, osa-MIR395f, osa-MIR395u, osa-MIR396a, osa-MIR396b, osa-MIR396c, osa-MIR156k, osa-MIR156l, osa-MIR159a, osa-MIR159b, osa-MIR159c, osa-MIR159d, osa-MIR159e, osa-MIR159f, osa-MIR160e, osa-MIR160f, osa-MIR162b, osa-MIR164c, osa-MIR164d, osa-MIR164e, osa-MIR166k, osa-MIR166l, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR171b, osa-MIR171c, osa-MIR171d, osa-MIR171e, osa-MIR171f, osa-MIR171g, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR166g, osa-MIR166h, osa-MIR166i, osa-MIR171h, osa-MIR408, osa-MIR172d, osa-MIR171i, osa-MIR167j, osa-MIR166m, osa-MIR166j, osa-MIR164f, osa-MIR396e, gma-MIR156d, gma-MIR156e, gma-MIR156c, gma-MIR159a, gma-MIR160a, gma-MIR166a, gma-MIR166b, gma-MIR167a, gma-MIR167b, gma-MIR172a, gma-MIR172b, gma-MIR156a, gma-MIR396a, gma-MIR396b, gma-MIR156b, gma-MIR169a, osa-MIR395m, osa-MIR395n, osa-MIR395o, osa-MIR395p, osa-MIR395q, osa-MIR395v, osa-MIR395w, osa-MIR395r, osa-MIR169r, gma-MIR159b, gma-MIR159c, gma-MIR162a, gma-MIR164a, gma-MIR167c, gma-MIR169b, gma-MIR169c, gma-MIR171a, gma-MIR171b, gma-MIR482a, sly-MIR166a, sly-MIR166b, sly-MIR167a, sly-MIR169a, sly-MIR169b, sly-MIR169c, sly-MIR169d, sly-MIR171a, sly-MIR171b, sly-MIR171c, sly-MIR171d, sly-MIR395a, sly-MIR395b, sly-MIR156a, sly-MIR156b, sly-MIR156c, sly-MIR159, sly-MIR162, sly-MIR172a, sly-MIR172b, osa-MIR396f, gma-MIR167d, gma-MIR396c, mdm-MIR482a, gma-MIR167e, gma-MIR167f, gma-MIR172c, gma-MIR172d, gma-MIR172e, osa-MIR396g, osa-MIR396h, osa-MIR396d, osa-MIR395x, osa-MIR395y, gma-MIR396d, gma-MIR482b, gma-MIR167g, gma-MIR156f, gma-MIR169d, gma-MIR172f, gma-MIR171c, gma-MIR169e, gma-MIR394b, gma-MIR156g, gma-MIR159d, gma-MIR394a, gma-MIR396e, gma-MIR156h, gma-MIR156i, gma-MIR160b, gma-MIR160c, gma-MIR160d, gma-MIR160e, gma-MIR162b, gma-MIR164b, gma-MIR164c, gma-MIR164d, gma-MIR166c, gma-MIR166d, gma-MIR166e, gma-MIR166f, gma-MIR166g, gma-MIR166h, gma-MIR169f, gma-MIR169g, gma-MIR171d, gma-MIR171e, gma-MIR171f, gma-MIR171g, gma-MIR394c, gma-MIR408d, gma-MIR482c, gma-MIR171h, gma-MIR171i, gma-MIR169h, gma-MIR167h, gma-MIR169i, gma-MIR396f, gma-MIR396g, gma-MIR167i, sly-MIR482e, sly-MIR482a, gma-MIR171j, gma-MIR395a, gma-MIR395b, gma-MIR395c, gma-MIR408a, gma-MIR408b, gma-MIR408c, gma-MIR156j, gma-MIR156k, gma-MIR156l, gma-MIR156m, gma-MIR156n, gma-MIR156o, gma-MIR159e, gma-MIR159f, gma-MIR162c, gma-MIR166i, gma-MIR166j, gma-MIR169j, gma-MIR169k, gma-MIR169l, gma-MIR169m, gma-MIR169n, gma-MIR171k, gma-MIR172g, gma-MIR172h, gma-MIR172i, gma-MIR172j, gma-MIR396h, gma-MIR396i, gma-MIR482d, gma-MIR167j, gma-MIR171l, gma-MIR156p, gma-MIR171m, gma-MIR172k, gma-MIR171n, gma-MIR156q, gma-MIR171o, gma-MIR172l, gma-MIR169o, gma-MIR171p, gma-MIR394d, gma-MIR169p, gma-MIR156r, gma-MIR396j, gma-MIR171q, gma-MIR156s, gma-MIR169r, gma-MIR169s, gma-MIR396k, gma-MIR166k, gma-MIR156t, gma-MIR482e, gma-MIR171r, gma-MIR394e, gma-MIR169t, gma-MIR171s, gma-MIR166l, gma-MIR171t, gma-MIR394f, gma-MIR171u, gma-MIR395d, gma-MIR395e, gma-MIR395f, gma-MIR395g, gma-MIR166m, gma-MIR169u, sly-MIR482b, sly-MIR482c, gma-MIR156u, gma-MIR156v, gma-MIR156w, gma-MIR156x, gma-MIR156y, gma-MIR156z, gma-MIR156aa, gma-MIR156ab, gma-MIR160f, gma-MIR164e, gma-MIR164f, gma-MIR164g, gma-MIR164h, gma-MIR164i, gma-MIR164j, gma-MIR164k, gma-MIR166n, gma-MIR166o, gma-MIR166p, gma-MIR166q, gma-MIR166r, gma-MIR166s, gma-MIR166t, gma-MIR166u, gma-MIR169v, gma-MIR394g, gma-MIR395h, gma-MIR395i, gma-MIR395j, gma-MIR395k, gma-MIR395l, gma-MIR395m, mdm-MIR156a, mdm-MIR156b, mdm-MIR156c, mdm-MIR156d, mdm-MIR156e, mdm-MIR156f, mdm-MIR156g, mdm-MIR156h, mdm-MIR156i, mdm-MIR156j, mdm-MIR156k, mdm-MIR156l, mdm-MIR156m, mdm-MIR156n, mdm-MIR156o, mdm-MIR156p, mdm-MIR156q, mdm-MIR156r, mdm-MIR156s, mdm-MIR156t, mdm-MIR156u, mdm-MIR156v, mdm-MIR156w, mdm-MIR156x, mdm-MIR156y, mdm-MIR156z, mdm-MIR156aa, mdm-MIR156ab, mdm-MIR156ac, mdm-MIR156ad, mdm-MIR156ae, mdm-MIR159a, mdm-MIR159b, mdm-MIR160a, mdm-MIR160b, mdm-MIR160c, mdm-MIR160d, mdm-MIR160e, mdm-MIR162a, mdm-MIR162b, mdm-MIR164a, mdm-MIR164b, mdm-MIR164c, mdm-MIR164d, mdm-MIR164e, mdm-MIR164f, mdm-MIR166a, mdm-MIR166b, mdm-MIR166c, mdm-MIR166d, mdm-MIR166e, mdm-MIR166f, mdm-MIR166g, mdm-MIR166h, mdm-MIR166i, mdm-MIR167a, mdm-MIR167b, mdm-MIR167c, mdm-MIR167d, mdm-MIR167e, mdm-MIR167f, mdm-MIR167g, mdm-MIR167h, mdm-MIR167i, mdm-MIR167j, mdm-MIR169a, mdm-MIR169b, mdm-MIR169c, mdm-MIR169d, mdm-MIR171a, mdm-MIR171b, mdm-MIR171c, mdm-MIR171d, mdm-MIR171e, mdm-MIR171f, mdm-MIR171g, mdm-MIR171h, mdm-MIR171i, mdm-MIR171j, mdm-MIR171k, mdm-MIR171l, mdm-MIR171m, mdm-MIR171n, mdm-MIR172a, mdm-MIR172b, mdm-MIR172c, mdm-MIR172d, mdm-MIR172e, mdm-MIR172f, mdm-MIR172g, mdm-MIR172h, mdm-MIR172i, mdm-MIR172j, mdm-MIR172k, mdm-MIR172l, mdm-MIR172m, mdm-MIR172n, mdm-MIR172o, mdm-MIR394a, mdm-MIR394b, mdm-MIR395a, mdm-MIR395b, mdm-MIR395c, mdm-MIR395d, mdm-MIR395e, mdm-MIR395f, mdm-MIR395g, mdm-MIR395h, mdm-MIR395i, mdm-MIR396a, mdm-MIR396b, mdm-MIR396c, mdm-MIR396d, mdm-MIR396e, mdm-MIR396f, mdm-MIR396g, mdm-MIR408a, mdm-MIR482b, mdm-MIR482c, mdm-MIR408b, mdm-MIR408c, mdm-MIR408d, mdm-MIR482d, mdm-MIR159c, mdm-MIR171o, mdm-MIR169e, mdm-MIR169f, sly-MIR164a, sly-MIR164b, sly-MIR394, sly-MIR166c, sly-MIR156d, sly-MIR156e, sly-MIR396a, sly-MIR167b, sly-MIR482d, sly-MIR169e, sly-MIR396b, sly-MIR171e, gma-MIR167k, gma-MIR167l, gma-MIR169w, sly-MIR172c, sly-MIR408, sly-MIR172d, sly-MIR169f, sly-MIR171f, mdm-MIR159d, mdm-MIR159e, mdm-MIR159f, mdm-MIR166j, mdm-MIR395j, mdm-MIR169g, mdm-MIR169h, mdm-MIR169i, mdm-MIR169j, mdm-MIR171p, mdm-MIR395k, mdm-MIR171q, mdm-MIR169k, mdm-MIR169l, mdm-MIR169m, mdm-MIR169n, mdm-MIR172p, mdm-MIR395l, mdm-MIR169o
Targeted gene families were mostly involved in developmental processes and auxin response factors were targeted by two miRNA families - miR160 and miR167. [score:6]
These thirteen conserved pre-miRNAs belonged to the miR156 (6), miR159 (4), miR160 (2) and miR170 (1) families. [score:1]
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16
[+] score: 7
Most of the conserved miRNAs (such as miR156, miR159, miR160, miR164, miR167, miR171, miR172, miR319, and some others) usually target a range of transcription factors like MYBs, ARFs, SBPs, NACs, AP2-like factors, GRFs, and GRASs, and their miRNAs -mediated regulations are important for plant growth and development and may act in the core gene expression networks (Liu et al., 2013). [score:7]
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[+] score: 5
miR393, miR160 and miR167 are up-regulated in leaves challenged with the virulent bacterial pathogen Pseudomonas syringae pv. [score:4]
Similarly, miR393, miR319, miR158, miR160, miR167, miR165/166 and miR159 are induced, while miR390, miR408 and miR398 are repressed, in Arabidopsis thaliana (Arabidopsis) leaves infected with Pst DC3000 [20]. [score:1]
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[+] score: 5
Other miRNAs from this paper: sly-MIR167a, sly-MIR156a, sly-MIR156b, sly-MIR156c, sly-MIR172a, sly-MIR172b, sly-MIR399, mdm-MIR156a, mdm-MIR156b, mdm-MIR156c, mdm-MIR156d, mdm-MIR156e, mdm-MIR156f, mdm-MIR156g, mdm-MIR156h, mdm-MIR156i, mdm-MIR156j, mdm-MIR156k, mdm-MIR156l, mdm-MIR156m, mdm-MIR156n, mdm-MIR156o, mdm-MIR156p, mdm-MIR156q, mdm-MIR156r, mdm-MIR156s, mdm-MIR156t, mdm-MIR156u, mdm-MIR156v, mdm-MIR156w, mdm-MIR156x, mdm-MIR156y, mdm-MIR156z, mdm-MIR156aa, mdm-MIR156ab, mdm-MIR156ac, mdm-MIR156ad, mdm-MIR156ae, mdm-MIR160a, mdm-MIR160b, mdm-MIR160c, mdm-MIR160d, mdm-MIR160e, mdm-MIR167a, mdm-MIR167b, mdm-MIR167c, mdm-MIR167d, mdm-MIR167e, mdm-MIR167f, mdm-MIR167g, mdm-MIR167h, mdm-MIR167i, mdm-MIR167j, mdm-MIR168a, mdm-MIR168b, mdm-MIR172a, mdm-MIR172b, mdm-MIR172c, mdm-MIR172d, mdm-MIR172e, mdm-MIR172f, mdm-MIR172g, mdm-MIR172h, mdm-MIR172i, mdm-MIR172j, mdm-MIR172k, mdm-MIR172l, mdm-MIR172m, mdm-MIR172n, mdm-MIR172o, mdm-MIR399a, mdm-MIR399b, mdm-MIR399c, mdm-MIR399d, mdm-MIR399e, mdm-MIR399f, mdm-MIR399g, mdm-MIR399h, mdm-MIR399i, mdm-MIR399j, sly-MIR168a, sly-MIR168b, ppe-MIR156a, ppe-MIR156b, ppe-MIR156c, ppe-MIR156d, ppe-MIR156e, ppe-MIR156f, ppe-MIR156g, ppe-MIR156h, ppe-MIR156i, ppe-MIR160a, ppe-MIR160b, ppe-MIR167a, ppe-MIR167b, ppe-MIR167c, ppe-MIR167d, ppe-MIR168, ppe-MIR172a, ppe-MIR172b, ppe-MIR172c, ppe-MIR172d, ppe-MIR399a, ppe-MIR399b, ppe-MIR399c, ppe-MIR399d, ppe-MIR399e, ppe-MIR399f, ppe-MIR399g, ppe-MIR399h, ppe-MIR399i, ppe-MIR399j, ppe-MIR399k, ppe-MIR399l, ppe-MIR399m, ppe-MIR399n, sly-MIR156d, sly-MIR156e, sly-MIR167b, sly-MIR172c, sly-MIR172d, mdm-MIR399k, mdm-MIR172p
In addition, several members of ARF family predicted to be targets of miR160, and in particular miR167 (whose target is the ARF8) (Mallory et al., 2005). [score:5]
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[+] score: 4
In previous studies, STTM had been used to silence miR165/166, miR160, and miR159 in A. thaliana, cotton, soybean, tobacco and these miRNAs were found functioning as regulators of plant growth and development 17– 21. [score:3]
A number of plant miRNAs, such as miR159, miR160, miR166, miR169, miR172, and miR396, are involved in the response to drought, water deficit, and salt stresses 23, 24. [score:1]
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20
[+] score: 4
Other miRNAs from this paper: sly-MIR167a, sly-MIR167b
That is, Sl-ARF2A, Sl-ARF2B, Sl-ARF3 and Sl-ARF4 are predicted to be potentially targeted by TAS3; Sl-ARF6A, Sl-ARF8A and Sl-ARF8B by miR167; and Sl-ARF10A, Sl-ARF10B, Sl-ARF16A, Sl-ARF16B and Sl-ARF17 by miR160. [score:3]
The marker in Sl-ARF family shows Sl-ARF2A, 2B, 3 and 4genes are spliced by TAS 3, Sl-ARF8A and 8B spliced by miRl67, and Sl-ARF10A, 10B, 16A, 16B and 17 spliced by miR160. [score:1]
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21
[+] score: 4
In Arabidopsis calli grown on SIM, MIR160a levels were more downregulated in totipotent calli than in non-totipotent calli [15]. [score:4]
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22
[+] score: 4
Moreover, the balance between repressing (ARF17) and activating (ARF6 and ARF8) factors is post-transcriptionally regulated by miR160 and miR167 (Gutierrez et al., 2009). [score:2]
Because ARF17 is a target of miRNA160, a selection of other ARFs regulated by miRNAs were investigated and AR numbers were recorded in ARF6, 8, 10, and 16 mutants. [score:2]
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23
[+] score: 3
For example, two reproduction-related rice lncRNAs were confirmed to be target mimics of miR160 and miR164 11. [score:3]
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24
[+] score: 1
miR156-miR160 coexisted in 110 unique genes and transcripts, enriched for molecular functions like RNA polymerase activity (P-value: 1.7E-03). [score:1]
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25
[+] score: 1
In addition, some miRNAs such as miR160, miR167, miRNA172, miR158, miR159, miR165/166, miR319, and miR393 are involved in pathogen defense [5, 7]. [score:1]
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[+] score: 1
The members of each family were different, the miR156, miR166 and miR171 had more than ten members, in the contrary, miR160, miR319, miR394, miR395, miR399, miR408, miR472, miR482, miR827 had only one member in their corresponding family. [score:1]
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