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Other miRNAs from this paper: hsa-let-7b, hsa-mir-18a, hsa-mir-21, hsa-mir-32, hsa-mir-93, mmu-mir-130a, mmu-mir-138-2, mmu-mir-142a, mmu-mir-144, mmu-mir-150, mmu-mir-182, mmu-mir-200b, mmu-mir-205, hsa-mir-34a, hsa-mir-182, hsa-mir-205, hsa-mir-219a-1, hsa-mir-222, hsa-mir-200b, mmu-mir-301a, mmu-mir-34c, mmu-mir-34b, mmu-mir-106b, mmu-mir-130b, hsa-mir-130a, hsa-mir-138-2, hsa-mir-142, hsa-mir-144, hsa-mir-138-1, hsa-mir-150, mmu-mir-200a, mmu-let-7b, mmu-mir-18a, mmu-mir-21a, mmu-mir-93, mmu-mir-34a, mmu-mir-337, mmu-mir-339, mmu-mir-135b, hsa-mir-200c, mmu-mir-32, mmu-mir-200c, mmu-mir-219a-1, mmu-mir-222, mmu-mir-138-1, hsa-mir-106b, hsa-mir-200a, hsa-mir-219a-2, mmu-mir-219a-2, hsa-mir-34b, hsa-mir-34c, hsa-mir-301a, hsa-mir-130b, hsa-mir-302c, hsa-mir-369, hsa-mir-337, hsa-mir-135b, hsa-mir-339, hsa-mir-335, mmu-mir-335, mmu-mir-411, hsa-mir-423, hsa-mir-18b, mmu-mir-434, hsa-mir-451a, mmu-mir-451a, hsa-mir-484, mmu-mir-484, hsa-mir-487b, mmu-mir-487b, mmu-mir-369, hsa-mir-590, hsa-mir-411, mmu-mir-302c, hsa-mir-762, mmu-mir-762, mmu-mir-672, mmu-mir-677, mmu-mir-423, mmu-mir-681, mmu-mir-700, mmu-mir-707, mmu-mir-871, mmu-mir-883a, mmu-mir-18b, mmu-mir-453, mmu-mir-590, hsa-mir-875, mmu-mir-466d, mmu-mir-877, hsa-mir-877, hsa-mir-219b, hsa-mir-451b, mmu-mir-21b, mmu-mir-21c, mmu-mir-451b, mmu-mir-219b, mmu-mir-219c, mmu-mir-142b
miR-871 - ND miR-875-3p - - - ND miR-877 + ND miR-883a-5p - ND miR-93 +miR-93 was over-expressed in human T-cell leukemia virus 1- transformed human T-cell lines and primary peripheral blood mononuclear cells from adult T-cell leukemia patients [46].
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Other miRNAs from this paper: mmu-let-7g, mmu-let-7i, mmu-mir-127, mmu-mir-128-1, mmu-mir-183, mmu-let-7d, mmu-let-7a-1, mmu-let-7a-2, mmu-let-7b, mmu-let-7c-1, mmu-let-7c-2, mmu-let-7e, mmu-let-7f-1, mmu-let-7f-2, mmu-mir-31, mmu-mir-128-2, mmu-mir-489, mmu-mir-485, mmu-mir-675, mmu-mir-673, mmu-mir-691, mmu-mir-707, mmu-mir-718, mmu-mir-873a, mmu-mir-3064, mmu-mir-3074-1, mmu-mir-3074-2, mmu-let-7j, mmu-mir-873b, mmu-let-7k
Using RNAhybrid and RNAcofold, we found two miRNAs in Ifrd1 (miR-3064-5p and miR-875-3p) and one in Etv1 (miR-673-5p) with predicted differences of greater than 5 kcal/joule MFE between the two mouse strains in both tools.
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For instance, we identified 5 hub TFs/genes (Rel, Ppp1r9a, Smad7, Ndn, and Cdkn1c) and 10 hub miRNAs (mir-92a-3p, mir-377-3p, mir-17-5p, mir-96-5p, mir-875-3p, mir-875-5p, mir-721, mir-330-3p, mir-20a-5p, and mir-19a-3p) for the monocyte lineage (Figure E in S1 File).
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Other miRNAs from this paper: mmu-mir-23b, mmu-mir-30a, mmu-mir-30b, mmu-mir-182, mmu-mir-200b, mmu-mir-30e, mmu-mir-34c, mmu-mir-34b, mmu-mir-30c-1, mmu-mir-30c-2, mmu-mir-30d, mmu-mir-200a, mmu-mir-26a-1, mmu-mir-34a, mmu-mir-200c, mmu-mir-26a-2, mmu-mir-30f
El BezawyR miR-875-5p counteracts epithelial-to-mesenchymal transition and enhances radiation response in prostate cancer through repression of the EGFR-ZEB1 axisCancer Lett.
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