1 |
[+]
score:
6
Other miRNAs from this paper: ath-MIR156a, ath-MIR156b, ath-MIR156c, ath-MIR156d, ath-MIR156e, ath-MIR156f, ath-MIR159a, ath-MIR160a, ath-MIR160b, ath-MIR160c, ath-MIR164a, ath-MIR164b, ath-MIR165a, ath-MIR165b, ath-MIR166a, ath-MIR166b, ath-MIR166c, ath-MIR166d, ath-MIR166e, ath-MIR166f, ath-MIR166g, ath-MIR167a, ath-MIR167b, ath-MIR171a, ath-MIR172a, ath-MIR172b, ath-MIR159b, ath-MIR319a, ath-MIR319b, ath-MIR167d, ath-MIR171b, ath-MIR171c, ath-MIR172c, ath-MIR172d, ath-MIR393a, ath-MIR393b, ath-MIR396a, ath-MIR396b, ath-MIR156g, ath-MIR156h, ath-MIR159c, ath-MIR319c, ath-MIR164c, ath-MIR167c, ath-MIR172e, ath-MIR841b, ath-MIR5021, ath-MIR156i, ath-MIR156j
For miR841 no function or downstream target gene is known.
[score:3]
Comparing the relative abundance of all miRNAs analyzed we found 8 miRNAs less abundant in the AtERI overexpressing plants (with miR841 showing the strongest decrease by 12-fold) and 94 miRNAs without significant influence.
[score:3]
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2 |
[+]
score:
4
Other miRNAs from this paper: ath-MIR162a, ath-MIR162b, ath-MIR164a, ath-MIR164b, ath-MIR168a, ath-MIR168b, ath-MIR169a, ath-MIR170, ath-MIR173, ath-MIR169b, ath-MIR169c, ath-MIR169d, ath-MIR169e, ath-MIR169f, ath-MIR169g, ath-MIR169h, ath-MIR169i, ath-MIR169j, ath-MIR169k, ath-MIR169l, ath-MIR169m, ath-MIR169n, ath-MIR390a, ath-MIR390b, ath-MIR164c, ath-MIR828, ath-MIR841b
As demonstrated for miR164 and miR169, Figure S3B shows that the levels of two additional miRNAs, specifically miR841 and miR170 (Table 1), are elevated and reduced respectively in the absence of DRB2 expression (Figure S3A).
[score:3]
Figure S3 Comparison of miR841, miR162 and miR170 accumulation in the SAM region in drb mutant lines.
[score:1]
[1 to 20 of 2 sentences]
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3 |
[+]
score:
2
Other miRNAs from this paper: ath-MIR156a, ath-MIR156b, ath-MIR156c, ath-MIR156d, ath-MIR156e, ath-MIR156f, ath-MIR160a, ath-MIR160b, ath-MIR160c, ath-MIR165a, ath-MIR165b, ath-MIR166a, ath-MIR166b, ath-MIR166c, ath-MIR166d, ath-MIR166e, ath-MIR166f, ath-MIR166g, ath-MIR169a, ath-MIR169b, ath-MIR169c, ath-MIR169d, ath-MIR169e, ath-MIR169f, ath-MIR169g, ath-MIR169h, ath-MIR169i, ath-MIR169j, ath-MIR169k, ath-MIR169l, ath-MIR169m, ath-MIR169n, ath-MIR393a, ath-MIR393b, ath-MIR156g, ath-MIR156h, ath-MIR418, ath-MIR823, ath-MIR841b, ath-MIR156i, ath-MIR156j, ath-MIR8177
The partial results are shown in TableĀ 5, and the complete results are available in Additional file 5. Table 5 Top 5 prediction results for miRNAs responding to high-salt conditions and TMV-Cg stress Stress miRNA Score High-salt ath-miR418 0.932 ath-miR166 0.929 ath-miR160 0.908 ath-miR841 0.892 ath-miR169 0.816 TMV-Cg ath-miR165 1.000 ath-miR156 0.939 ath-miR418 0.932 ath-miR160 0.908 ath-miR8177 0.899 To our knowledge, most of the existing methods mentioned previously have not been implemented as publicly available software packages.
[score:1]
We also predicted several new miRNAs that are likely to respond to high-salt conditions, including miR418, miR166 [36, 40], miR160 [36, 38], miR841 [41], miR169 [37, 42, 43].
[score:1]
[1 to 20 of 2 sentences]
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4 |
[+]
score:
1
Other miRNAs from this paper: ath-MIR156a, ath-MIR156b, ath-MIR156c, ath-MIR156d, ath-MIR156e, ath-MIR156f, ath-MIR159a, ath-MIR160a, ath-MIR160b, ath-MIR160c, ath-MIR164a, ath-MIR164b, ath-MIR166a, ath-MIR166b, ath-MIR166c, ath-MIR166d, ath-MIR166e, ath-MIR166f, ath-MIR166g, ath-MIR167a, ath-MIR167b, ath-MIR172a, ath-MIR172b, ath-MIR173, ath-MIR159b, ath-MIR319a, ath-MIR319b, ath-MIR167d, ath-MIR172c, ath-MIR172d, ath-MIR390a, ath-MIR390b, ath-MIR391, ath-MIR393a, ath-MIR393b, ath-MIR395a, ath-MIR395b, ath-MIR395c, ath-MIR395d, ath-MIR395e, ath-MIR395f, ath-MIR396a, ath-MIR396b, ath-MIR397a, ath-MIR397b, ath-MIR398a, ath-MIR398b, ath-MIR398c, ath-MIR399a, ath-MIR399b, ath-MIR399c, ath-MIR399d, ath-MIR399e, ath-MIR399f, ath-MIR408, ath-MIR156g, ath-MIR156h, ath-MIR158b, ath-MIR159c, ath-MIR319c, ath-MIR164c, ath-MIR167c, ath-MIR172e, ath-MIR780, ath-MIR825, ath-MIR828, ath-MIR836, ath-MIR846, ath-MIR841b, ath-MIR156i, ath-MIR156j
The genes in the gene pairs include 3 miRNAs (miR780, miR836, miR841), TAS1C, one PPR gene, two genes involved in auxin response, a histone H2A gene and a phosphoribosylanthranilate isomerase gene.
[score:1]
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5 |
[+]
score:
1
Other miRNAs from this paper: ath-MIR156a, ath-MIR156b, ath-MIR156c, ath-MIR156d, ath-MIR156e, ath-MIR156f, ath-MIR160a, ath-MIR160b, ath-MIR160c, ath-MIR161, ath-MIR162a, ath-MIR162b, ath-MIR164a, ath-MIR164b, ath-MIR165a, ath-MIR165b, ath-MIR167a, ath-MIR167b, ath-MIR168a, ath-MIR168b, ath-MIR171a, ath-MIR172a, ath-MIR172b, ath-MIR167d, ath-MIR171b, ath-MIR171c, ath-MIR172c, ath-MIR172d, ath-MIR390a, ath-MIR390b, ath-MIR394a, ath-MIR394b, ath-MIR395a, ath-MIR395b, ath-MIR395c, ath-MIR395d, ath-MIR395e, ath-MIR395f, ath-MIR396a, ath-MIR396b, ath-MIR398a, ath-MIR398b, ath-MIR398c, ath-MIR403, ath-MIR408, ath-MIR156g, ath-MIR156h, ath-MIR164c, ath-MIR167c, ath-MIR172e, ath-MIR472, ath-MIR841b, ath-MIR156i, ath-MIR156j
Furthermore, miR472 and miR841 showed similar patterns of accumulation, but with low read counts and less than 2 fold-change differences between treatments (S5 Table).
[score:1]
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6 |
[+]
score:
1
Other miRNAs from this paper: ath-MIR156a, ath-MIR156b, ath-MIR156c, ath-MIR156d, ath-MIR156e, ath-MIR156f, ath-MIR157d, ath-MIR158a, ath-MIR159a, ath-MIR160a, ath-MIR160b, ath-MIR160c, ath-MIR161, ath-MIR162a, ath-MIR162b, ath-MIR163, ath-MIR164a, ath-MIR164b, ath-MIR165a, ath-MIR165b, ath-MIR166a, ath-MIR166b, ath-MIR166c, ath-MIR166d, ath-MIR166e, ath-MIR166f, ath-MIR166g, ath-MIR167a, ath-MIR167b, ath-MIR169a, ath-MIR170, ath-MIR172a, ath-MIR172b, ath-MIR173, ath-MIR159b, ath-MIR319a, ath-MIR319b, ath-MIR167d, ath-MIR169b, ath-MIR169c, ath-MIR169d, ath-MIR169e, ath-MIR169f, ath-MIR169g, ath-MIR169h, ath-MIR169i, ath-MIR169j, ath-MIR169k, ath-MIR169l, ath-MIR169m, ath-MIR169n, ath-MIR171b, ath-MIR172c, ath-MIR172d, ath-MIR391, ath-MIR395a, ath-MIR395b, ath-MIR395c, ath-MIR395d, ath-MIR395e, ath-MIR395f, ath-MIR397a, ath-MIR397b, ath-MIR398a, ath-MIR398b, ath-MIR398c, ath-MIR399a, ath-MIR399b, ath-MIR399c, ath-MIR399d, ath-MIR399e, ath-MIR399f, ath-MIR400, ath-MIR408, ath-MIR156g, ath-MIR156h, ath-MIR158b, ath-MIR159c, ath-MIR319c, ath-MIR164c, ath-MIR167c, ath-MIR172e, ath-MIR447a, ath-MIR447b, ath-MIR447c, ath-MIR773a, ath-MIR775, ath-MIR822, ath-MIR823, ath-MIR826a, ath-MIR827, ath-MIR829, ath-MIR833a, ath-MIR837, ath-MIR842, ath-MIR843, ath-MIR845a, ath-MIR848, ath-MIR852, ath-MIR824, ath-MIR854a, ath-MIR854b, ath-MIR854c, ath-MIR854d, ath-MIR857, ath-MIR864, ath-MIR2111a, ath-MIR2111b, ath-MIR773b, ath-MIR841b, ath-MIR854e, ath-MIR833b, ath-MIR156i, ath-MIR156j, ath-MIR826b
In contrast, among the remaining three repressed miRNA families, miR167 and miR172 participate in the auxin response 37 and the juvenile-to-adult transition 38, respectively, and the function of miR841 is unknown.
[score:1]
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