Stem-loop sequence osa-MIR6249b

Accession

MI0026009 (change log)

Description

Oryza sativa miR6249b stem-loop

Stem-loop

   -   -  -   -  c ug a -   -   - -      cca   cc 
5'  cca uc ccg cg g  a g agc ucg c cggcgg   ugg  a
    ||| || ||| || |  | | ||| ||| | ||||||   |||   
3'  ggu ag ggc gc c  u c ucg agc g gccgcc   acc  u
   g   u  c   a  - gu c g   u   c c      ---   uc 

Deep sequencing

390 reads, 100 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr4: 30286459-30286540 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0026009

Mature sequence osa-miR6249b

• Accession: MIMAT0031378
• Sequence: 11 - cgugaagagcucgccggcggc - 31
• Deep sequencing: 384 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000076F78F_39947

References

1. PMID:22585409 "Novel miRNAs in the control of arsenite levels in rice" Liu Q Funct Integr Genomics. 12:649-658(2012).