Stem-loop sequence osa-MIR5836

Accession

MI0019857 (change log)

Description

Oryza sativa miR5836 stem-loop

Literature search

2 open access papers mention osa-MIR5836
(2 sentences)

Stem-loop

   --uuacgaggcaugagcagcc  a    -    uauuc      u 
5'                      gg ccau ggga     aggcac c
                        || |||| ||||     |||||| c
3'                      cc ggua uccu     uuugug u
   aauguaccgucgaugucaucu  -    a    uacac      g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr6: 17701867-17701955 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0019857

Mature sequence osa-miR5836

• Accession: MIMAT0023312
• Sequence: 11 - ugagcagccggaccaugggau - 31
• Evidence: experimental; Illumina [1]

References

1. PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage" Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ Plant Cell. 23:4185-4207(2011).