Stem-loop sequence osa-MIR5543

Accession

MI0019064 (change log)

Description

Oryza sativa miR5543 stem-loop

Stem-loop

   -                 g             c          auuaaua 
5'  auugaaaucauaugaau guauauuuucuug aacaugugua       c
    ||||||||||||||||| ||||||||||||| ||||||||||       c
3'  ugacuuuaguauauuug cauauaaaagaac uuguacacau       a
   u                 g             a          ccacgaa 

Deep sequencing

2 reads, 0 reads per million, 1 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr4: 16417248-16417349 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0019064

Mature sequence osa-miR5543

• Accession: MIMAT0022179
• Sequence: 11 - uaugaaugguauauuuucuug - 31
• Deep sequencing: 2 reads, 1 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000045FD25_39947

References

1. PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa" Wei LQ, Yan LF, Wang T Genome Biol. 12:R53(2011).