Stem-loop sequence osa-MIR5542

Accession

MI0019063 (change log)

Description

Oryza sativa miR5542 stem-loop

Stem-loop

   uuc    g        a        ug  a   -aaaaaa    g      a              a     caua 
5'    uacg ucuuugag agguauca  ag uac       uuua uguaaa uuuaguaucuuaug uaccu    g
      |||| |||||||| ||||||||  || |||       |||| |||||| |||||||||||||| |||||     
3'    augc aggaacuc uccauagu  uc aug       agau acauuu aaaucauagaauac augga    u
   aaa    a        c        gu  c   guaaaaa    a      -              c     ucca 

Deep sequencing

93 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr4: 32797606-32797757 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0019063

Mature sequence osa-miR5542

• Accession: MIMAT0022178
• Sequence: 11 - uuugagaagguaucaugagau - 31
• Deep sequencing: 11 reads, 2 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa" Wei LQ, Yan LF, Wang T Genome Biol. 12:R53(2011).