Stem-loop sequence osa-MIR5528

Accession

MI0019048 (change log)

Description

Oryza sativa miR5528 stem-loop

Literature search

2 open access papers mention osa-MIR5528
(2 sentences)

Stem-loop

   g  -     uuu         -uu   aag    -  ua 
5'  ac aucag   gcaguaucu   acc   gucu gg  c
    || |||||   |||||||||   |||   |||| ||   
3'  ug uaguc   cguuguaga   ugg   caga cc  u
   -  c     cuc         uuu   ---    a  cg 

Deep sequencing

3 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr11: 9586987-9587059 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from osa-MIR5528

• osa-MIR5527: Chr11: 9589960-9590324 [+]
• osa-MIR5528: Chr11: 9586987-9587059 [-]

Database links

• miRBase Tracker:MI0019048

Mature sequence osa-miR5528

• Accession: MIMAT0022163
• Sequence: 43 - aagacgguuuuagauguugcc - 63
• Deep sequencing: 3 reads, 2 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa" Wei LQ, Yan LF, Wang T Genome Biol. 12:R53(2011).