Stem-loop sequence osa-MIR5521

Accession

MI0019040 (change log)

Description

Oryza sativa miR5521 stem-loop

Literature search

1 open access papers mention osa-MIR5521
(3 sentences)

Stem-loop

   a   a       - g    --ca  uc       ccacgguaaaauccuugagcaaacuguucugcuuccgugccucucacagcgcugguuc 
5'  uga uguucag u gcug    ua  ugaugag                                                          c
    ||| ||||||| | ||||    ||  |||||||                                                          a
3'  gcu acgaguu a ugac    gu  acugcuc                                                          g
   a   g       g g    uagg  uu       agagaaggucgauauaucugcuaaauacacaacaaggagauguagacuuaguauacgu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr1: 2334077-2334260 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0019040

Mature sequence osa-miR5521

• Accession: MIMAT0022155
• Sequence: 11 - aguggcugcauaucugaugag - 31
• Evidence: experimental; Illumina [1]

References

1. PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa" Wei LQ, Yan LF, Wang T Genome Biol. 12:R53(2011).