Stem-loop sequence osa-MIR5505

Accession

MI0019023 (change log)

Description

Oryza sativa miR5505 stem-loop

Literature search

2 open access papers mention osa-MIR5505
(2 sentences)

Stem-loop

   ca  g   c a     c  gu   uu        gaagcauugccgauaucgauauauauuucuuugcaugggacaguagccuuuucugcggcggaucguuuc 
5'   uu gca u uggcg au  aug  gaguucuu                                                                     c
     || ||| | ||||| ||  |||  ||||||||                                                                     u
3'   ga cgu a aucgc ua  uau  cuuaggag                                                                     u
   aa  g   a a     -  gu   gg        uagauacguuaagaacaugaauaaacuacuuucuguuucuuucucuaguccaauaaauacuaaccucuu 

Deep sequencing

1 reads, 0 reads per million, 1 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr12: 13389006-13389213 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0019023

Mature sequence osa-miR5505

• Accession: MIMAT0022138
• Sequence: 176 - gaggauucgguauugaucgcua - 197
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00003917D4_39947

References

1. PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa" Wei LQ, Yan LF, Wang T Genome Biol. 12:R53(2011).