Stem-loop sequence osa-MIR530

Accession

MI0003203 (change log)

Description

Oryza sativa miR530 stem-loop

Gene family

MIPF0000521; MIR530

Literature search

15 open access papers mention osa-MIR530
(31 sentences)

Stem-loop

         g  c         ac         ca  -g       u  agcagcaagcuagcaauacgugcuugaucgcu 
5' gugaua ag ugcauuugc  cugcaccua  ga  aggaaga ga                                a
   |||||| || |||||||||  |||||||||  ||  ||||||| ||                                u
3' uacugu uc acguagacg  gacguggau  cu  uccuucu cu                                a
         a  a         ga         cc  ag       -  gguccuuguuguaacacacguucuucgaucgc 

Deep sequencing

6 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr4: 8303538-8303694 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0003203

Mature sequence osa-miR530-5p

• Accession: MIMAT0006787
• Sequence: 11 - ugcauuugcaccugcaccua - 30
• Evidence: experimental; cloned [2]

Mature sequence osa-miR530-3p

• Accession: MIMAT0002886
• Previous IDs: osa-miR530
• Sequence: 129 - aggugcagaggcagaugcaac - 149
• Deep sequencing: 5 reads, 2 experiments
• Evidence: experimental; Northern [1]
• Database links:
  • RNAcentral:URS000035D5FB_39947

References

1. PMID:16126864 "Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice" Liu B, Li P, Li X, Liu C, Cao S, Chu C, Cao X Plant Physiol. 139:296-305(2005).
2. PMID:18363789 "Stress-responsive microRNAs in Populus" Lu S, Sun YH, Chiang VL Plant J. 55:131-151(2008).