Stem-loop sequence osa-MIR5075

Accession

MI0017952 (change log)

Description

Oryza sativa miR5075 stem-loop

Literature search

2 open access papers mention osa-MIR5075
(2 sentences)

Stem-loop

   gu    --   -    g   a   -      -  u     ccgucg       cagguuccucgccgugagcggguaccgcacggcgaggcagggcggguucgagcgcgacgccgagugguucgacccggcggcgcgcgcguggcgccgccucgaccgcguccgcgccccucccuccgccgcccacgucgugguccgcggccgcgucuggugcaucgagggcgccgccgugauggaguggcucggcucg 
5'   cgga  gga gcgg acg gug cgacgg ga ggcga      ccggcga                                                                                                                                                                                                    c
     ||||  ||| |||| ||| ||| |||||| || |||||      |||||||                                                                                                                                                                                                    g
3'   gccu  ucu cgcc ugc cgc gcugcc cu ccgcu      ggccgcu                                                                                                                                                                                                    c
   --    ag   a    -   -   c      u  u     ----ua       ugagaccuccacccgcuuggugccaggucaagaaccagaaaugcagcuugugggucucccgcaccgccggccugggcggcagccucaggagcuaccgcggccacugcugcugcgcgagcggcggcggcugcgucugccgcgcccgccacggccggaacuccgggcccccccuccccggcuggagcgcggugggcgg 

Deep sequencing

9 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

• Coordinates (MSU7): Chr11: 7878336-7878823 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0017952

Mature sequence osa-miR5075

• Accession: MIMAT0020561
• Sequence: 458 - uucuccgucgccgccguccgc - 478
• Evidence: not experimental

References

1. PMID:21352554 "Discovery of barley miRNAs through deep sequencing of short reads" Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U BMC Genomics. 12:129(2011).