Stem-loop sequence osa-MIR399h

Accession

MI0001060 (change log)

Description

Oryza sativa miR399h stem-loop

Gene family

MIPF0000015; MIR399

Literature search

60 open access papers mention osa-MIR399h
(226 sentences)

Stem-loop

   cca      a              c           ------------c    g 
5'    ugcauu cugggcaggucucc uuggcaguggc             gauc a
      |||||| |||||||||||||| |||||||||||             |||| g
3'    acguaa gacccguucagagg aaccgucaccg             cuag c
   uag      c              a           aaaacgcaccaaa    u 

Deep sequencing

7 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Comments

This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].

Genome context

• Coordinates (MSU7): Chr5: 26307936-26308034 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from osa-MIR399h

• osa-MIR399c: Chr5: 26305938-26306047 [-]
• osa-MIR399h: Chr5: 26307936-26308034 [+]
• osa-MIR399k: Chr5: 26311253-26311358 [+]

Database links

• miRBase Tracker:MI0001060

Mature sequence osa-miR399h

• Accession: MIMAT0000991
• Sequence: 69 - ugccaaaggagacuugcccag - 89
• Deep sequencing: 7 reads, 2 experiments
• Evidence: by similarity; MI0001023
• Database links:
  • RNAcentral:URS0000221C1E_39947

References

1. PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).