Stem-loop sequence osa-MIR3982

Accession

MI0017258 (change log)

Description

Oryza sativa miR3982 stem-loop

Stem-loop

                  c         a       a       cccuuuugcaggacagcguggugguaauauuguacuuagccccuuugagccacaguaccaccccgaa 
5' cgauguggcgcucca guaggcaac auuuugc uccggcc                                                                   a
   ||||||||||||||| ||||||||| ||||||| |||||||                                                                   c
3' gcugcaccgcgaggu cauccguug uaaaacg aggucgg                                                                   u
                  a         a       c       aguagguuuuuaacgugaaucgaggaaacucgaggacacucccuccucccuaaaccccuaaagcccc 

Deep sequencing

21 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr11: 1384740-1384958 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0017258

Mature sequence osa-miR3982-5p

• Accession: MIMAT0019686
• Sequence: 8 - gcgcuccacguaggcaacaau - 28
• Deep sequencing: 9 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000284275_39947

Mature sequence osa-miR3982-3p

• Accession: MIMAT0019687
• Sequence: 194 - aguugccuacauggagcgcca - 214
• Deep sequencing: 11 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000487A0C_39947

References

1. PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)" Li T, Li H, Zhang YX, Liu JY Nucleic Acids Res. 39:2821-2833(2011).