Stem-loop sequence osa-MIR2097

Accession

MI0010557 (change log)

Description

Oryza sativa miR2097 stem-loop

Stem-loop

   -guggg         g    g c     ag    uaga  gauagag       a   g ---g   -ag gg u g  uu    g     cg 
5'       gaagagaug gacg g aggga  gaag    ug       uuugggg uag a    gga   g  a a au  gguu uuuuu  g
         ||||||||| |||| | |||||  ||||    ||       ||||||| ||| |    |||   |  | | ||  |||| |||||   
3'       uuucuuuac cugu c uucuu  cuuu    ac       gaauccc guc u    uuu   c  u u ug  ccaa aaaaa  a
   cgaaaa         g    g -     cu    uaag  -----ga       c   g gaca   gua uu u g  uu    a     aa 

Deep sequencing

4 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr1: 9055603-9055779 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0010557

Mature sequence osa-miR2097-5p

• Accession: MIMAT0010058
• Sequence: 8 - agagaugggacgggcagggaag - 29
• Deep sequencing: 2 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000056DE36_39947

Mature sequence osa-miR2097-3p

• Accession: MIMAT0010059
• Sequence: 146 - uucucuucuucgugucgcauuu - 167
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:19103661 "Characterization and expression profiles of miRNAs in rice seeds" Xue LJ, Zhang JJ, Xue HW Nucleic Acids Res. 37:916-930(2009).