Stem-loop sequence osa-MIR1858a

AccessionMI0008240 (change log)
DescriptionOryza sativa miR1858a stem-loop
Gene family MIPF0000650; MIR1858
Literature search

2 open access papers mention osa-MIR1858a
(2 sentences)

Stem-loop 
   --uc     a           aaagg                                   g                  a           a    -c  cg 
5'     ccguc ucgcugccggc     gagggggggugccgcaacaaggagaggaggacgga uggggcgaguggagcguc aaggggauguc ucgc  gc  a
       ||||| |||||||||||     ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||  ||  a
3'     ggcag agcgacggucg     cuuccccccacggcguuguuccucuccuccugccu accccgcucaccucguag uuccccuacag ggug  cg  u
   cucc     c           -----                                   a                  c           -    cu  uc
Get sequence
Deep sequencing
3 reads, 0 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (MSU7) Overlapping transcripts
Chr9: 13536611-13536810 [+]
intergenic
Clustered miRNAs
< 10kb from osa-MIR1858a
osa-MIR1861lChr9: 13532426-13532554 [+]
osa-MIR1861mChr9: 13532649-13532744 [+]
osa-MIR1858aChr9: 13536611-13536810 [+]
Database links

Mature sequence osa-miR1858a

Accession MIMAT0007786
Sequence

46 -  

gagaggaggacggaguggggc

 - 66

Get sequence
Deep sequencing1 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).