Stem-loop sequence osa-MIR1848

Accession

MI0008225 (change log)

Description

Oryza sativa miR1848 stem-loop

Literature search

9 open access papers mention osa-MIR1848
(15 sentences)

Stem-loop

     -gc     cc    c    g      ug a 
5' cc   gggcc  cucg cggc cgcgcg  c g
   ||   |||||  |||| |||| ||||||  |  
3' gg   cucgg  gagc gccg gcgcgc  g g
     auc     -u    u    -      gu u 

Deep sequencing

10 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr4: 18131807-18131869 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0008225

Mature sequence osa-miR1848

• Accession: MIMAT0007768
• Sequence: 11 - ccucgccggcgcgcgcgugca - 31
• Deep sequencing: 9 reads, 2 experiments
• Evidence: experimental; 454 [1]

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).