Stem-loop sequence osa-MIR172d

Accession

MI0001154 (change log)

Description

Oryza sativa miR172d stem-loop

Gene family

MIPF0000035; MIR172

Literature search

79 open access papers mention osa-MIR172d
(482 sentences)

Stem-loop

   aaac     -   c    a         c           a     -----   u  u  cuaaa  a 
5'     agucg gug uugc ggugcagca caucaagauuc caucg     agu ca cc     cg g
       ||||| ||| |||| ||||||||| ||||||||||| |||||     ||| || ||     ||  
3'     ucagc cgc aacg cuacgucgu guaguucuaag guagu     uca gu gg     gc a
   -uca     u   a    a         a           a     guaua   -  c  uugga  u 

Deep sequencing

5331 reads, 3.4e+03 reads per million, 2 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (MSU7): Chr2: 35143537-35143666 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001154

Mature sequence osa-miR172d-5p

• Accession: MIMAT0022885
• Sequence: 22 - gcagcaccaucaagauucac - 41
• Deep sequencing: 41 reads, 2 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS0000002B3D_39947

Mature sequence osa-miR172d-3p

• Accession: MIMAT0001084
• Previous IDs: osa-miR172d
• Sequence: 91 - agaaucuugaugaugcugcau - 111
• Deep sequencing: 5290 reads, 2 experiments
• Evidence: by similarity; MI0000216
• Database links:
  • RNAcentral:URS00004D8ACB_39947

References

1. PMID:15685364 "Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa" Li Y, Li W, Jin YX Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005).
2. PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors" Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y PLoS Pathog. 7:e1002176(2011).