Stem-loop sequence osa-MIR172b

Accession

MI0001140 (change log)

Description

Oryza sativa miR172b stem-loop

Gene family

MIPF0000035; MIR172

Literature search

77 open access papers mention osa-MIR172b
(503 sentences)

Stem-loop

   g          c ug               --      uacau       augcauaugucuaugcaucuuugagcuuguuguucugaucucaacaaccuagcuagcuaauauuucucu 
5'  ugauuucuga g  gcaucaucaagauuc  acacau     ugcaugc                                                                     c
    |||||||||| |  |||||||||||||||  ||||||     |||||||                                                                      
3'  auuaaaggcu c  cguaguaguucuaag  ugugua     guguacg                                                                     c
   a          a gu               gg      uauau       caaauuaaucgaagcuagagagagaagagagagguacgcacguugguacguaguacguccagucccggu 

Deep sequencing

5080 reads, 3.4e+03 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Comments

This sequence is a predicted paralogue of the previously identified miR172 family [1]. It is predicted to target mRNAs coding for APETALA2-like transcription factors.

Genome context

• Coordinates (MSU7): Chr1: 42923736-42923973 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001140

Mature sequence osa-miR172b

• Accession: MIMAT0001070
• Sequence: 208 - ggaaucuugaugaugcugcau - 228
• Deep sequencing: 5074 reads, 2 experiments
• Evidence: by similarity; MI0000215
• Database links:
  • RNAcentral:URS0000263070_39947

References

1. PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).