Stem-loop sequence osa-MIR172a

Accession

MI0001139 (change log)

Description

Oryza sativa miR172a stem-loop

Gene family

MIPF0000035; MIR172

Literature search

78 open access papers mention osa-MIR172a
(491 sentences)

Stem-loop

   g         gc ug               a  u   ---------------   auauau 
5'  uguuugcgg  g  gcaucaucaagauuc ca cca               ugc      c
    |||||||||  |  ||||||||||||||| || |||               |||       
3'  acagacgcc  c  cguaguaguucuaag gu ggu               acg      a
   a         ua gu               a  c   uuagccuacauauac   cagaac 

Deep sequencing

5292 reads, 3.4e+03 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Comments

This sequence is a predicted paralogue of the previously identified miR172 family [1]. It is predicted to target mRNAs coding for APETALA2-like transcription factors.

Genome context

• Coordinates (MSU7): Chr9: 22881834-22881942 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001139

Mature sequence osa-miR172a

• Accession: MIMAT0001069
• Sequence: 79 - agaaucuugaugaugcugcau - 99
• Deep sequencing: 5292 reads, 2 experiments
• Evidence: by similarity; MI0000215
• Database links:
  • RNAcentral:URS00004D8ACB_39947

References

1. PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).