Stem-loop sequence osa-MIR167a

Accession

MI0000676 (change log)

Description

Oryza sativa miR167a stem-loop

Gene family

MIPF0000023; MIR167_1

Literature search

85 open access papers mention osa-MIR167a
(269 sentences)

Stem-loop

            u      a    c  -            uc     a  cg    --ug      uac    g 
5' uagugugaa gaguga gcug ca gcaugaucuagc  ugauu au  gcac    uuggcg   aguc a
   ||||||||| |||||| |||| || ||||||||||||  ||||| ||  ||||    ||||||   ||||  
3' gucacacuu uuuacu cgac gu cguacuagauug  acuaa ug  ugug    gacugc   ucag u
            c      c    a  a            uc     a  ug    ucua      uaa    u 

Deep sequencing

86681 reads, 5.86e+04 reads per million, 2 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr12: 25476808-25476948 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from osa-MIR167a

• osa-MIR167a: Chr12: 25476808-25476948 [+]
• osa-MIR167h: Chr12: 25480618-25480737 [+]

Database links

• miRBase Tracker:MI0000676

Mature sequence osa-miR167a-5p

• Accession: MIMAT0000641
• Previous IDs: osa-miR167a
• Sequence: 14 - ugaagcugccagcaugaucua - 34
• Deep sequencing: 86656 reads, 2 experiments
• Evidence: by similarity; MI0000208
• Database links:
  • RNAcentral:URS000013A25F_39947

Mature sequence osa-miR167a-3p

• Accession: MIMAT0006780
• Previous IDs: osa-miR167a*
• Sequence: 110 - aucaugcaugacagccucauuu - 131
• Deep sequencing: 23 reads, 2 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS00004D99DE_39947

References

1. PMID:12101121 "MicroRNAs in plants" Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP Genes Dev. 16:1616-1626(2002).
2. PMID:18312648 "Identification of novel and candidate miRNAs in rice by high throughput sequencing" Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK BMC Plant Biol. 8:25(2008).