Stem-loop sequence osa-MIR1436

Accession

MI0007022 (change log)

Description

Oryza sativa miR1436 stem-loop

Gene family

MIPF0000344; MIR818

Literature search

13 open access papers mention osa-MIR1436
(45 sentences)

Stem-loop

            --------                      a                                          u 
5' aguuuaugu        gcuacucccuccgucccauaau uuaaaaccuaggacuggauaggacguuucauaguacaaugac c
   |||||||||        |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| a
3' ucaaauaua        ugaugagggaggcaggguauua aauuuuggauccugaccuauccugcaaaguaucauguuacug g
            uccaacuc                      c                                          a 

Deep sequencing

857 reads, 100 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr1: 20316586-20316746 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0007022

Mature sequence osa-miR1436

• Accession: MIMAT0005987
• Sequence: 121 - acauuaugggacggagggagu - 141
• Deep sequencing: 421 reads, 2 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000172684_39947

References

1. PMID:18312648 "Identification of novel and candidate miRNAs in rice by high throughput sequencing" Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK BMC Plant Biol. 8:25(2008).