Stem-loop sequence osa-MIR1428g

Accession

MI0010549 (change log)

Description

Oryza sativa miR1428g stem-loop

Gene family

MIPF0000575; MIR1428

Literature search

5 open access papers mention osa-MIR1428g
(18 sentences)

Stem-loop

   -                  g cc      g     u aa  g    --   g     
5'  cgcuuugcgaauucacag c  uaucuu uggua g  cu agua  cgc auga 
    |||||||||||||||||| |  |||||| ||||| |  || ||||  ||| ||| u
3'  gcgaaacguuuaaguguc g  auagaa accau c  gg uuau  gcg uauu 
   c                  - ua      a     u gg  g    ac   g     

Deep sequencing

5 reads, 0 reads per million, 1 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr10: 3961370-3961478 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0010549

Mature sequence osa-miR1428g-5p

• Accession: MIMAT0010044
• Sequence: 10 - aauucacaggcccuaucuugug - 31
• Evidence: experimental; Illumina [1]

References

1. PMID:19103661 "Characterization and expression profiles of miRNAs in rice seeds" Xue LJ, Zhang JJ, Xue HW Nucleic Acids Res. 37:916-930(2009).