Stem-loop sequence osa-MIR1428f

Accession

MI0010548 (change log)

Description

Oryza sativa miR1428f stem-loop

Gene family

MIPF0000575; MIR1428

Literature search

5 open access papers mention osa-MIR1428f
(20 sentences)

Stem-loop

   -u               a   cc            u aa  a      -cgau a 
5'   gcuuugcgaauucac ggc  uaucuuguggua g  cu aguacg     g u
     ||||||||||||||| |||  |||||||||||| |  || ||||||     |  
3'   cgaaaugcuuaagug ccg  auagaauaccau c  gg uuaugc     c u
   ug               -   ua            u gg  g      auggu u 

Deep sequencing

4 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr7: 5451329-5451437 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0010548

Mature sequence osa-miR1428f-5p

• Accession: MIMAT0010043
• Sequence: 10 - aauucacaggcccuaucuugug - 31
• Evidence: experimental; Illumina [1]

References

1. PMID:19103661 "Characterization and expression profiles of miRNAs in rice seeds" Xue LJ, Zhang JJ, Xue HW Nucleic Acids Res. 37:916-930(2009).