Stem-loop sequence osa-MIR1428e

AccessionMI0008239 (change log)
DescriptionOryza sativa miR1428e stem-loop
Gene family MIPF0000575; MIR1428
Literature search

7 open access papers mention osa-MIR1428e
(48 sentences)

Stem-loop 
                   ca   cc            u aa  g        a  a 
5' gcgcuuggcgaauuca  ggc  uaucuuguggua g  cu gguacgcg ug u
   ||||||||||||||||  |||  |||||||||||| |  || |||||||| || u
3' ugcgaacuguuuaagu  ccg  auagaauaccau c  gg uuaugcgu ac u
                   -a   ua            u gg  g        c  g
Get sequence
Deep sequencing
8 reads, 0 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (MSU7) Overlapping transcripts
Chr3: 23076870-23076979 [+]
intergenic
Clustered miRNAs
< 10kb from osa-MIR1428e
osa-MIR1428eChr3: 23076870-23076979 [+]
osa-MIR1428dChr3: 23077268-23077391 [+]
Database links

Mature sequence osa-miR1428e-5p

Accession MIMAT0007784
Sequence

11 -  

aauucacaggcccuaucuugug

 - 32

Get sequence
Evidence experimental; 454 [1], Illumina [3]

Mature sequence osa-miR1428e-3p

Accession MIMAT0007785
Sequence

82 -  

uaagauaaugccaugaauuug

 - 102

Get sequence
Deep sequencing4 reads, 2 experiments
Evidence experimental; 454 [1], cloned [2]
Database links

References

1
PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).
2
PMID:19055717 "Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice" Lacombe S, Nagasaki H, Santi C, Duval D, Piegu B, Bangratz M, Breitler JC, Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski WM, Sato Y, Echeverria M BMC Plant Biol. 8:123(2008).
3
PMID:19103661 "Characterization and expression profiles of miRNAs in rice seeds" Xue LJ, Zhang JJ, Xue HW Nucleic Acids Res. 37:916-930(2009).