Stem-loop sequence osa-MIR1427

AccessionMI0006967 (change log)
DescriptionOryza sativa miR1427 stem-loop
Literature search

4 open access papers mention osa-MIR1427
(16 sentences)

Stem-loop 
   -------------              c    c            a                             g  a       c   cguua   ccaacugaaaucugcacugauuugauuacaugcgca 
5'              uggcugcgcgcgac gcgc gucccgcaggcc gcgccgcgccaccgcgcgguuccgcagca gg caugcgc acc     cag                                    c
                |||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||| || ||||||| |||     |||                                     
3'              accgacgcgcgcug cgcg cagggcguccgg cgcggcgcgguggcgugccaaggcgucgu cc gugcgcg ugg     guc                                    g
   gccagggcaccga              a    c            c                             g  g       c   cuuag   cuugucgcgugugagcgacguacgugacguauauau
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Deep sequencing
2 reads, 0 reads per million, 1 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (MSU7) Overlapping transcripts
Chr8: 9192581-9192837 [+]
intergenic
Database links

Mature sequence osa-miR1427

Accession MIMAT0005961
Sequence

186 -  

ugcggaaccgugcgguggcgc

 - 206

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Evidence experimental; MPSS [1], Northern [1], cloned [2]

References

1
PMID:18353984 "Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)" Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ Proc Natl Acad Sci U S A. 105:4951-4956(2008).
2
PMID:18312648 "Identification of novel and candidate miRNAs in rice by high throughput sequencing" Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK BMC Plant Biol. 8:25(2008).