Stem-loop sequence osa-MIR1320

Accession

MI0009717 (change log)

Description

Oryza sativa miR1320 stem-loop

Literature search

10 open access papers mention osa-MIR1320
(17 sentences)

Stem-loop

   ---u    c    u          g             uu    cggga 
5'     uagg cuac uuggaacgga gaauuuuauagga  uuug     a
       |||| |||| |||||||||| |||||||||||||  ||||      
3'     aucc gaug aaccuugcuu cuuaaaauguccu  agac     u
   gauu    c    u          a             -u    aauuu 

Deep sequencing

107 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr6: 5073507-5073602 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0009717

Mature sequence osa-miR1320-5p

• Accession: MIMAT0009137
• Previous IDs: osa-miR1320
• Sequence: 13 - uggaacggaggaauuuuauag - 33
• Deep sequencing: 86 reads, 2 experiments
• Evidence: experimental; 454 [1], Illumina [2]
• Database links:
  • RNAcentral:URS0000123143_39947

Mature sequence osa-miR1320-3p

• Accession: MIMAT0015286
• Sequence: 62 - uguaaaauucauucguuccaa - 82
• Deep sequencing: 19 reads, 2 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS0000113796_39947

References

1. PMID:18323537 "Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa" Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ Genome Res. 18:571-584(2008).
2. PMID:19903869 "Rice MicroRNA effector complexes and targets" Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y Plant Cell. 21:3421-3435(2009).