Stem-loop sequence rno-mir-5132

Accession

MI0030364 (change log)

Description

Rattus norvegicus miR-5132 stem-loop

Gene family

MIPF0002061; mir-5132

Stem-loop

   c      ac         u    -c        ug 
5'  aggccg  guggggcgg ggac  caggcuuc  g
    ||||||  ||||||||| ||||  ||||||||  a
3'  uccggc  cgcccugcc cuug  guccgaag  g
   -      ga         c    ua        uc 

Deep sequencing

434 reads, 0 reads per million, 202 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chrX: 156716797-156716867 [+]
• Overlapping transcripts:

  sense

  ENSRNOT00000065177 ; Irak1-201; 3'UTR (exon 2)

Database links

• miRBase Tracker:MI0030364

Mature sequence rno-miR-5132-5p

• Accession: MIMAT0035750
• Sequence: 9 - cguggggcgguggacccaggcu - 30
• Deep sequencing: 203 reads, 125 experiments
• Evidence: experimental; RNAseq-metaanalysis [1]
• Predicted targets:
  • TargetScanVert:rno-miR-5132-5p
  • miRDB:rno-miR-5132-5p

Mature sequence rno-miR-5132-3p

• Accession: MIMAT0035751
• Sequence: 44 - ccugauguuccccgucccgcagc - 66
• Deep sequencing: 225 reads, 131 experiments
• Evidence: experimental; RNAseq-metaanalysis [1]
• Predicted targets:
  • TargetScanVert:rno-miR-5132-3p
  • miRDB:rno-miR-5132-3p

References

1. PMID:23329697 "Rat mir-155 generated from the lncRNA Bic is 'hidden' in the alternate genomic assembly and reveals the existence of novel mammalian miRNAs and clusters" Uva P, Da Sacco L, Del Corno M, Baldassarre A, Sestili P, Orsini M, Palma A, Gessani S, Masotti A RNA. 19:365-379(2013).