Stem-loop sequence rno-mir-193b

Accession

MI0030355 (change log)

Description

Rattus norvegicus miR-193b stem-loop

Gene family

MIPF0000082; mir-193

Literature search

23 open access papers mention rno-mir-193b
(127 sentences)

Stem-loop

       g       u    gu    a    g  a  ag uug 
5' gugg cccagaa cggg  uuug gggc ag ug  u   u
   |||| ||||||| ||||  |||| |||| || ||  |   g
3' uacu ggguuuu gccc  aaac cccg uc ac  a   u
       g       c    ug    a    g  a  cu uuu 

Deep sequencing

50449 reads, 9.39 reads per million, 490 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr14: 30331049-30331131 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0030355

Mature sequence rno-miR-193b-5p

• Accession: MIMAT0035733
• Sequence: 15 - gggguuuugagggcgaga - 32
• Deep sequencing: 317 reads, 157 experiments
• Evidence: experimental; RNAseq-metaanalysis [1]
• Predicted targets:
  • TargetScanVert:rno-miR-193b-5p
  • miRDB:rno-miR-193b-5p

Mature sequence rno-miR-193b-3p

• Accession: MIMAT0035734
• Sequence: 51 - aacuggcccacaaaguccc - 69
• Deep sequencing: 50130 reads, 490 experiments
• Evidence: experimental; RNAseq-metaanalysis [1]
• Predicted targets:
  • TargetScanVert:rno-miR-193b-3p
  • miRDB:rno-miR-193b-3p

References

1. PMID:23329697 "Rat mir-155 generated from the lncRNA Bic is 'hidden' in the alternate genomic assembly and reveals the existence of novel mammalian miRNAs and clusters" Uva P, Da Sacco L, Del Corno M, Baldassarre A, Sestili P, Orsini M, Palma A, Gessani S, Masotti A RNA. 19:365-379(2013).