Stem-loop sequence rno-mir-148a

Accession

MI0030350 (change log)

Description

Rattus norvegicus miR-148a stem-loop

Gene family

MIPF0000056; mir-148

Literature search

26 open access papers mention rno-mir-148a
(46 sentences)

Stem-loop

   ag   guu        u              -  aca u      -   ag 
5'   cca   uggucuuu gagacaaaguucug ag   c cugacu cug  u
     |||   |||||||| |||||||||||||| ||   | |||||| |||  a
3'   ggu   gucggaga cucuguuucaagac uc   g gacuga gau  u
   --   ---        u              a  -ac u      a   ag 

Deep sequencing

33747272 reads, 4.03e+04 reads per million, 509 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr4: 81013269-81013365 [-]
• Overlapping transcripts:

  sense

  ENSRNOT00000073699 ; exon 1

Database links

• miRBase Tracker:MI0030350

Mature sequence rno-miR-148a-5p

• Accession: MIMAT0035724
• Sequence: 23 - aaaguucugagacacucugacuc - 45
• Deep sequencing: 671852 reads, 500 experiments
• Evidence: experimental; RNAseq-metaanalysis [1]
• Predicted targets:
  • TargetScanVert:rno-miR-148a-5p
  • miRDB:rno-miR-148a-5p

Mature sequence rno-miR-148a-3p

• Accession: MIMAT0035725
• Sequence: 61 - ucagugcacuacagaacuuug - 81
• Deep sequencing: 33072638 reads, 507 experiments
• Evidence: experimental; RNAseq-metaanalysis [1]
• Predicted targets:
  • TargetScanVert:rno-miR-148a-3p
  • miRDB:rno-miR-148a-3p

References

1. PMID:23329697 "Rat mir-155 generated from the lncRNA Bic is 'hidden' in the alternate genomic assembly and reveals the existence of novel mammalian miRNAs and clusters" Uva P, Da Sacco L, Del Corno M, Baldassarre A, Sestili P, Orsini M, Palma A, Gessani S, Masotti A RNA. 19:365-379(2013).