Stem-loop sequence dre-let-7d-1

Accession

MI0001868 (change log)

Description

Danio rerio let-7d-1 stem-loop

Gene family

MIPF0000002; let-7

Literature search

42 open access papers mention dre-let-7d-1
(277 sentences)

Stem-loop

   u    -       u u   g   uu            uu  auaauaa 
5'  gugc guugcgg g gag uag  gguuguaugguu  gc       a
    |||| ||||||| | ||| |||  ||||||||||||  ||       c
3'  cacg cggcguc c uuc auc  ccaacaugucaa  ug       a
   g    u       c u   g   uu            -u  aggcccg 

Deep sequencing

225717 reads, 1.58e+04 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr16: 24881122-24881218 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mirlet7d-1
• EntrezGene:mirlet7d-1
• RNAcentral:URS000075B3BA_7955
• miRBase Tracker:MI0001868

Mature sequence dre-let-7d-5p

• Accession: MIMAT0001762
• Previous IDs: dre-let-7d
• Sequence: 15 - ugagguaguugguuguaugguu - 36
• Deep sequencing: 447651 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075C7A7_7955
• Predicted targets:
  • TargetScanFish:dre-let-7d

Mature sequence dre-let-7d-3p

• Accession: MIMAT0031931
• Sequence: 63 - cuguacaaccuucuagcuuucc - 84
• Deep sequencing: 266 reads, 9 experiments
• Evidence: not experimental

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).