Stem-loop sequence rno-mir-1199

Accession

MI0020343 (change log)

Description

Rattus norvegicus miR-1199 stem-loop

Gene family

MIPF0001659; mir-1199

Stem-loop

   agccugcgccggagccgcggucugag      u       g  a  aacucaucgaguugcgggugcggcc 
5'                           uccggg cgcgcgg ag gg                         g
                             |||||| ||||||| || ||                         g
3'                           aggucc gcgcgcc uc cc                         u
   -------------------------g      c       g  g  cuauggccuuggaccggccgacucg 

Deep sequencing

16 reads, 0 reads per million, 10 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr19: 25133394-25133513 [-]
• Overlapping transcripts:

  sense

  ENSRNOT00000007519 ; RGD1310262-201; exon 2

Database links

• miRBase Tracker:MI0020343

Mature sequence rno-miR-1199-5p

• Accession: MIMAT0031125
• Sequence: 21 - ucugaguccgggucgcgcgg - 40
• Evidence: not experimental
• Predicted targets:
  • TargetScanVert:rno-miR-1199-5p
  • miRDB:rno-miR-1199-5p

Mature sequence rno-miR-1199-3p

• Accession: MIMAT0031126
• Sequence: 65 - ugcggccggugcucagccggc - 85
• Deep sequencing: 6 reads, 5 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetScanVert:rno-miR-1199-3p
  • miRDB:rno-miR-1199-3p

References

1. PMID:23229173 "Human hepatocellular carcinoma cell-specific miRNAs reveal the differential expression of miR-24 and miR-27a in cirrhotic/non-cirrhotic HCC" Salvi A, Abeni E, Portolani N, Barlati S, De Petro G Int J Oncol. 42:391-402(2013).