Stem-loop sequence mmu-mir-216c

Accession

MI0025032 (change log)

Symbol

MGI:Mir216c

Description

Mus musculus miR-216c stem-loop

Literature search

15 open access papers mention mmu-mir-216c
(38 sentences)

Stem-loop

   --- aa        a            ug   ucu 
5'    g  gaaucucu cagguaagugug  guu   u
      |  |||||||| ||||||||||||  |||    
3'    c  uuuagaga guccguuuacac  cag   c
   uga cc        c            ua   uga 

Deep sequencing

18 reads, 91.7 reads per million, 12 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr11: 28746198-28746266 [-]
• Overlapping transcripts:

  antisense

  ENSMUST00000102363 ; Mir216b-201; exon 1

Clustered miRNAs

< 10kb from mmu-mir-216c

• mmu-mir-216c: chr11: 28746198-28746266 [-]
• mmu-mir-216b: chr11: 28746191-28746276 [+]

Database links

• MGI:Mir216c
• miRBase Tracker:MI0025032

Mature sequence mmu-miR-216c-5p

• Accession: MIMAT0029888
• Sequence: 1 - gaagaaucucuacagguaagugu - 23
• Deep sequencing: 10 reads, 6 experiments
• Evidence: experimental; RNAseq [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-216c-5p
  • miRDB:mmu-miR-216c-5p

Mature sequence mmu-miR-216c-3p

• Accession: MIMAT0029889
• Sequence: 47 - uuugccugcagagauuucccagu - 69
• Deep sequencing: 4 reads, 4 experiments
• Evidence: experimental; RNAseq [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-216c-3p
  • miRDB:mmu-miR-216c-3p

References

1. PMID:23325850 "Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues" Castellano L, Stebbing J Nucleic Acids Res. 41:3339-3351(2013).