Stem-loop sequence mmu-mir-7682

Accession

MI0025030 (change log)

Symbol

MGI:Mir7682

Description

Mus musculus miR-7682 stem-loop

Stem-loop

   -    a      uug      aa  u  g 
5'  aggc cgacuc   ccacag  ac ga u
    |||| ||||||   ||||||  || || g
3'  uucg guuggg   gguguc  ug uu c
   u    -      uug      -c  u  a 

Deep sequencing

517 reads, 3.92 reads per million, 51 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr1: 151442393-151442450 [+]
• Overlapping transcripts:

  sense

  ENSMUST00000065625 ; Trmt1l-201; intron 5

Database links

• MGI:Mir7682
• miRBase Tracker:MI0025030

Mature sequence mmu-miR-7682-5p

• Accession: MIMAT0029884
• Sequence: 1 - aggcacgacucuugccacagaaac - 24
• Deep sequencing: 8 reads, 7 experiments
• Evidence: experimental; RNAseq [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-7682-5p
  • miRDB:mmu-miR-7682-5p

Mature sequence mmu-miR-7682-3p

• Accession: MIMAT0029885
• Sequence: 38 - ccuguggguuggguuggcuuu - 58
• Deep sequencing: 509 reads, 48 experiments
• Evidence: experimental; RNAseq [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-7682-3p
  • miRDB:mmu-miR-7682-3p

References

1. PMID:23325850 "Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues" Castellano L, Stebbing J Nucleic Acids Res. 41:3339-3351(2013).