Stem-loop sequence mmu-mir-7116

Accession

MI0022967 (change log)

Symbol

MGI:Mir7116

Description

Mus musculus miR-7116 stem-loop

Stem-loop

   aaca u    a  uc             uaagaaa 
5'     g gaag ca  aggaaaaaaaaaa       u
       | |||| ||  |||||||||||||       g
3'     c cuuc gu  uccuuuuuuuuuu       a
   --ga u    c  -u             uccaaau 

Deep sequencing

162 reads, 722 reads per million, 55 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr11: 100478411-100478480 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000014211 ; Acly-002; intron 1

  OTTMUST00000014210 ; Acly-001; intron 25

  OTTMUST00000048853 ; Acly-005; intron 26

  ENSMUST00000154151 ; Acly-002; intron 1

  ENSMUST00000165111 ; Acly-201; intron 24

  ENSMUST00000007131 ; Acly-001; intron 25

  ENSMUST00000107389 ; Acly-005; intron 26

Database links

• MGI:Mir7116
• miRBase Tracker:MI0022967

Mature sequence mmu-miR-7116-5p

• Accession: MIMAT0028129
• Sequence: 6 - ugaagacaucaggaaaaaaaa - 26
• Deep sequencing: 10 reads, 10 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-7116-5p
  • miRDB:mmu-miR-7116-5p

Mature sequence mmu-miR-7116-3p

• Accession: MIMAT0028130
• Sequence: 49 - uuuuuuuccuuugccuucucag - 70
• Deep sequencing: 34 reads, 15 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-7116-3p
  • miRDB:mmu-miR-7116-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).