Stem-loop sequence mmu-mir-7093

Accession

MI0022943 (change log)

Symbol

MGI:Mir7093

Description

Mus musculus miR-7093 stem-loop

Stem-loop

   gugg             a       -cuau  gau   -     cauaauc 
5'     gcaggaugacaga ggaaaac     ca   agu uuguu       c
       ||||||||||||| |||||||     ||   ||| |||||       u
3'     cguccuacugucu ccuuuug     gu   uca gacaa       u
   --ga             a       uaccu  gau   c     cucucuc 

Deep sequencing

149 reads, 15.9 reads per million, 44 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 134757631-134757731 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000046461 ; Armcx3-001; intron 2

  OTTMUST00000046462 ; Armcx3-002; intron 2

  OTTMUST00000046463 ; Armcx3-003; intron 2

  ENSMUST00000081834 ; Armcx3-001; intron 2

  ENSMUST00000086880 ; Armcx3-002; intron 2

  ENSMUST00000086884 ; Armcx3-003; intron 2

Database links

• MGI:Mir7093
• miRBase Tracker:MI0022943

Mature sequence mmu-miR-7093-5p

• Accession: MIMAT0028092
• Sequence: 6 - caggaugacagaaggaaaaccu - 27
• Deep sequencing: 41 reads, 28 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-7093-5p
  • miRDB:mmu-miR-7093-5p

Mature sequence mmu-miR-7093-3p

• Accession: MIMAT0028093
• Sequence: 81 - uuuccaucugucauccugcag - 101
• Deep sequencing: 105 reads, 22 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-7093-3p
  • miRDB:mmu-miR-7093-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).