Stem-loop sequence mmu-mir-7078

Accession

MI0022928 (change log)

Symbol

MGI:Mir7078

Description

Mus musculus miR-7078 stem-loop

Stem-loop

   caggg                c c  g     a 
5'      ugugggugguaggaga g ug cuggu u
        |||||||||||||||| | || ||||| u
3'      acaccuacuauuuuuu c au gacca u
   ----g                u -  g     g 

Deep sequencing

151 reads, 0 reads per million, 39 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr8: 117459265-117459328 [+]
• Overlapping transcripts:

  sense

  ENSMUST00000095172 ; Cmip-201; intron 20

  ENSMUST00000166750 ; Cmip-202; intron 20

Clustered miRNAs

< 10kb from mmu-mir-7078

• mmu-mir-7077: chr8: 117453023-117453079 [+]
• mmu-mir-7078: chr8: 117459265-117459328 [+]

Database links

• MGI:Mir7078
• miRBase Tracker:MI0022928

Mature sequence mmu-miR-7078-5p

• Accession: MIMAT0028062
• Sequence: 6 - ugugggugguaggagacgcu - 25
• Deep sequencing: 147 reads, 37 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-7078-5p
  • miRDB:mmu-miR-7078-5p

Mature sequence mmu-miR-7078-3p

• Accession: MIMAT0028063
• Sequence: 44 - uacuuuuuuuaucauccacag - 64
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-7078-3p
  • miRDB:mmu-miR-7078-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).