Stem-loop sequence mmu-mir-7061

Accession

MI0022910 (change log)

Symbol

MGI:Mir7061

Description

Mus musculus miR-7061 stem-loop

Stem-loop

   gaauuuau            u   -   g  agaa 
5'         ggaaauaggagg gau uuu ag    a
           |||||||||||| ||| ||| ||     
3'         ccuuuauuuucc cua aaa uc    g
   --gauuuu            -   u   g  aguu 

Deep sequencing

73 reads, 0 reads per million, 37 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr7: 130908268-130908335 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000072274 ; Plekha1-012; intron 1

  OTTMUST00000072273 ; Plekha1-011; intron 2

  OTTMUST00000072272 ; Plekha1-010; intron 3

  OTTMUST00000072271 ; Plekha1-009; intron 5

  OTTMUST00000072265 ; Plekha1-003; intron 8

  OTTMUST00000072266 ; Plekha1-004; intron 9

  OTTMUST00000072264 ; Plekha1-002; intron 10

  OTTMUST00000072263 ; Plekha1-001; intron 10

  ENSMUST00000135359 ; Plekha1-012; intron 1

  ENSMUST00000126355 ; Plekha1-011; intron 2

  ENSMUST00000146111 ; Plekha1-010; intron 3

  ENSMUST00000136963 ; Plekha1-009; intron 5

  ENSMUST00000048180 ; Plekha1-003; intron 8

  ENSMUST00000151119 ; Plekha1-004; intron 9

  ENSMUST00000120441 ; Plekha1-002; intron 10

  ENSMUST00000075181 ; Plekha1-001; intron 10

  antisense

  OTTMUST00000094172 ; Fgfr2-007; intron 2

  ENSMUST00000124096 ; Fgfr2-007; intron 2

Database links

• MGI:Mir7061
• miRBase Tracker:MI0022910

Mature sequence mmu-miR-7061-5p

• Accession: MIMAT0028026
• Sequence: 6 - uauggaaauaggaggugauuuu - 27
• Deep sequencing: 66 reads, 37 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-7061-5p
  • miRDB:mmu-miR-7061-5p

Mature sequence mmu-miR-7061-3p

• Accession: MIMAT0028027
• Sequence: 47 - uaucccuuuuauuuccuuuuag - 68
• Deep sequencing: 5 reads, 5 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-7061-3p
  • miRDB:mmu-miR-7061-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).