Stem-loop sequence mmu-mir-7009

Accession

MI0022858 (change log)

Symbol

MGI:Mir7009

Description

Mus musculus miR-7009 stem-loop

Stem-loop

   cccuuuu    uc      cc    cuc   u 
5'        gggg  agggga  agag   cag g
          ||||  ||||||  ||||   ||| a
3'        uccc  uccccu  ucuc   guc c
   ---gacg    uc      uu    ucu   c 

Deep sequencing

78 reads, 2.19e+03 reads per million, 29 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr3: 36475461-36475524 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000048111 ; Anxa5-001; intron 1

  ENSMUST00000029266 ; Anxa5-001; intron 1

Database links

• MGI:Mir7009
• miRBase Tracker:MI0022858

Mature sequence mmu-miR-7009-5p

• Accession: MIMAT0027922
• Sequence: 6 - uuggggucaggggaccagagcu - 27
• Deep sequencing: 20 reads, 16 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-7009-5p
  • miRDB:mmu-miR-7009-5p

Mature sequence mmu-miR-7009-3p

• Accession: MIMAT0027923
• Sequence: 44 - ucuuuuccccucucccugcag - 64
• Deep sequencing: 13 reads, 10 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-7009-3p
  • miRDB:mmu-miR-7009-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).